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Conserved domains on  [gi|296179444|ref|NP_001171706|]
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seizure 6-like protein isoform 6 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 628-736 7.05e-26

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.88  E-value: 7.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 628 CGGELSA-VAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 701
Cdd:cd00041    1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 296179444 702 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:cd00041   81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 452-561 4.94e-21

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 89.01  E-value: 4.94e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 452 CGGAVHNATIGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLH-----DKDRMTVHSGQTNKSALLyDSLQTE 526
Cdd:cd00041    1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 296179444 527 SVPFEgLLSEGNTIRIEFTSDQARAASTFNIRFEA 561
Cdd:cd00041   80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 745-801 9.41e-14

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 66.33  E-value: 9.41e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 296179444 745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 801
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
PHA02639 super family cl31493
EEV host range protein; Provisional
 745-866 9.48e-10

EEV host range protein; Provisional


The actual alignment was detected with superfamily member PHA02639:

Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 60.83  E-value: 9.48e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 745 CSDLPEIQNGwKTTSHTELVR-GARITYQCDP----GYDIVGSDTLTCQWDLSWSSDPPFCeKIMYCTDPG-EVDHSTRL 818
Cdd:PHA02639  85 CNDPPSIING-KIYNKREMYKvGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPIC-KMINCRFPAlQNGYINGI 162

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 296179444 819 ISDPVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCV 866
Cdd:PHA02639 163 PSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINAT----WFPSIPTCV 206
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 281-388 9.73e-10

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


:

Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 57.04  E-value: 9.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 281 CSVSFSNP-EGYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRGVDGPTLTVLANQTLL 354
Cdd:cd00041    1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 296179444 355 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 388
Cdd:cd00041   80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
Sushi pfam00084
Sushi repeat (SCR repeat);
567-624 2.83e-09

Sushi repeat (SCR repeat);


:

Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 2.83e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 296179444  567 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:pfam00084   1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 393-448 1.43e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


:

Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 1.43e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444   393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:smart00032   1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 6-239 2.63e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444    6 PPAAGLRGISLFLALLLGSPAAALERDALPEGDASPLGPYLlPSGAPERGSP-GKEHPEERVVTAPPSSSqSAEVLGELV 84
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT-TAGPPAPAPPaAPAAGPPRRLTRPAVAS-LSESRESLP 2799

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   85 LDGTAPSAHHDIPALSPLLPEEARPKHALPPKkklPSLKQVNSARkqlrPKATSAATVQRAGSqpASQGLDLLSSSTEKP 164
Cdd:PHA03247 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPP---TSAQPTAPPP----PPGPPPPSLPLGGS--VAPGGDVRRRPPSRS 2870

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 296179444  165 GppgdpdpiVASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PHA03247 2871 P--------AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 628-736 7.05e-26

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.88  E-value: 7.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 628 CGGELSA-VAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 701
Cdd:cd00041    1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 296179444 702 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:cd00041   81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 452-561 4.94e-21

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 89.01  E-value: 4.94e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 452 CGGAVHNATIGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLH-----DKDRMTVHSGQTNKSALLyDSLQTE 526
Cdd:cd00041    1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 296179444 527 SVPFEgLLSEGNTIRIEFTSDQARAASTFNIRFEA 561
Cdd:cd00041   80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 637-736 9.88e-19

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 82.05  E-value: 9.88e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   637 GVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSGPQKLYSS-T 710
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdnceyDYVEIYDGPSASSPLLGRFCGSEAPPPVISSsS 80

                           90       100
                   ....*....|....*....|....*.
gi 296179444   711 PDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:smart00042  81 NSLTLTFVSDSS----VQKRGFSARY 102
CUB pfam00431
CUB domain;
628-723 1.66e-17

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 78.88  E-value: 1.66e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  628 CGGELSAVAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSG 702
Cdd:pfam00431   1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHdecgyDYVEIRDGPSASSPLLGRFCGSGI 80

                          90       100
                  ....*....|....*....|.
gi 296179444  703 PQKLYSSTPDLTIQFHSDPAG 723
Cdd:pfam00431  81 PEDIVSSSNQMTIKFVSDASV 101
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 462-559 2.97e-14

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 69.34  E-value: 2.97e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   462 GRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLL--HD---KDRMTVHSGQTNKSALL--YDSLQTESVPFEgll 534
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLesSDnceYDYVEIYDGPSASSPLLgrFCGSEAPPPVIS--- 77

                           90       100
                   ....*....|....*....|....*
gi 296179444   535 SEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 745-801 9.41e-14

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 66.33  E-value: 9.41e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 296179444 745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 801
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 745-800 1.11e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 66.40  E-value: 1.11e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 296179444   745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
745-800 1.30e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 63.29  E-value: 1.30e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 296179444  745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CUB pfam00431
CUB domain;
452-559 3.26e-12

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 63.85  E-value: 3.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  452 CGGAVHNATiGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLHD-----KDRMTVHSGQTNKSALL--Ydslq 524
Cdd:pfam00431   1 CGGVLTDSS-GSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhdecgYDYVEIRDGPSASSPLLgrF---- 75

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 296179444  525 TESVPFEGLLSEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:pfam00431  76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
PHA02639 PHA02639
EEV host range protein; Provisional
 745-866 9.48e-10

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 60.83  E-value: 9.48e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 745 CSDLPEIQNGwKTTSHTELVR-GARITYQCDP----GYDIVGSDTLTCQWDLSWSSDPPFCeKIMYCTDPG-EVDHSTRL 818
Cdd:PHA02639  85 CNDPPSIING-KIYNKREMYKvGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPIC-KMINCRFPAlQNGYINGI 162

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 296179444 819 ISDPVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCV 866
Cdd:PHA02639 163 PSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINAT----WFPSIPTCV 206
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 281-388 9.73e-10

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 57.04  E-value: 9.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 281 CSVSFSNP-EGYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRGVDGPTLTVLANQTLL 354
Cdd:cd00041    1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 296179444 355 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 388
Cdd:cd00041   80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 806-865 1.72e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 54.45  E-value: 1.72e-09
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysRETGTpiWTSRLPHC 865
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITC--LENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 806-866 1.81e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.39  E-value: 1.81e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296179444 806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysreTGTPIWTSRLPHCV 866
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITC----TENGGWSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
567-624 2.83e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 2.83e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 296179444  567 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:pfam00084   1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 567-624 7.38e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 52.53  E-value: 7.38e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 296179444   567 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:smart00032   1 CPPPPdIENGTVTSSSGTYSYGDTVTYSCDPGYTL-IGSSTITCLE--NGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 567-625 2.07e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 51.31  E-value: 2.07e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296179444 567 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECI-NVRdpyWNDTEPLCR 625
Cdd:cd00033    1 CPPPPvPENGTVTGSKGSYSYGSTVTYSCNEGYTL-VGSSTITCTeNGG---WSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
806-865 6.49e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 49.81  E-value: 6.49e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysRETGTpiWTSRLPHC 865
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITC--QEDGT--WSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 393-448 1.43e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 1.43e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444   393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:smart00032   1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 393-448 2.20e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.53  E-value: 2.20e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444 393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCInaSKPHWSSQEPIC 448
Cdd:cd00033    1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCT--ENGGWSPPPPTC 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 6-239 2.63e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444    6 PPAAGLRGISLFLALLLGSPAAALERDALPEGDASPLGPYLlPSGAPERGSP-GKEHPEERVVTAPPSSSqSAEVLGELV 84
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT-TAGPPAPAPPaAPAAGPPRRLTRPAVAS-LSESRESLP 2799

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   85 LDGTAPSAHHDIPALSPLLPEEARPKHALPPKkklPSLKQVNSARkqlrPKATSAATVQRAGSqpASQGLDLLSSSTEKP 164
Cdd:PHA03247 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPP---TSAQPTAPPP----PPGPPPPSLPLGGS--VAPGGDVRRRPPSRS 2870

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 296179444  165 GppgdpdpiVASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PHA03247 2871 P--------AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 290-386 3.21e-05

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 43.53  E-value: 3.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   290 GYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRgvDGPTLTVLANQTL---LVEGQVIR 361
Cdd:smart00042   1 GTITSPNYPQSYPNN-LDCVWTIRAPPGYRIELQFTDFDLESSDNceydyVEIY--DGPSASSPLLGRFcgsEAPPPVIS 77

                           90       100
                   ....*....|....*....|....*
gi 296179444   362 SPTNTISVYFRTFQDDGLGTFQLHY 386
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 1-234 1.21e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 42.74  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   1 MPAARPPAAGLRGISLFLALLLGSPAA---ALERDALPEGDASPLGPYLL-----PSGAPERGSPGKEHPEERVVTAPPS 72
Cdd:COG5180  111 PAAKTPELAAGALPAPAAAAALPKAKVtreATSASAGVALAAALLQRSDPilakdPDGDSASTLPPPAEKLDKVLTEPRD 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  73 SSQSAEVLGELVLDGTAPSAHHDIPALSPLlPEEARPKHALPPKKKLPSL------KQVNSARKQLRPKATSAATVQRAG 146
Cdd:COG5180  191 ALKDSPEKLDRPKVEVKDEAQEEPPDLTGG-ADHPRPEAASSPKVDPPSTsearsrPATVDAQPEMRPPADAKERRRAAI 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 147 SQPASQGLDLL----------SSSTEKPGPPGDPDPIVASEEASEVPLWLdRKESAVPTTPAPLQIS------PFT---- 206
Cdd:COG5180  270 GDTPAAEPPGLpvleagsepqSDAPEAETARPIDVKGVASAPPATRPVRP-PGGARDPGTPRPGQPTerpagvPEAasda 348

                        250       260
                 ....*....|....*....|....*...
gi 296179444 207 SQPYVAHTLPQRPEPGEPGPdmaQEAPQ 234
Cdd:COG5180  349 GQPPSAYPPAEEAVPGKPLE---QGAPR 373
Sushi pfam00084
Sushi repeat (SCR repeat);
393-448 6.97e-03

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 35.55  E-value: 6.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444  393 CNFPRRPDSGDVTV-MDLHS-GGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:pfam00084   1 CPPPPDIPNGKVSAtKNEYNyGASVSYECDPGYRLVGSPTITCQEDGT--WSPPFPEC 56
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 628-736 7.05e-26

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 102.88  E-value: 7.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 628 CGGELSA-VAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNS 701
Cdd:cd00041    1 CGGTLTAsTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSpncsyDYLEIYDGPSTSSPLLGRFCGST 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 296179444 702 GPQKLYSSTPDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:cd00041   81 LPPPIISSGNSLTVRFRSDSS----VTGRGFKATY 111
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 452-561 4.94e-21

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 89.01  E-value: 4.94e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 452 CGGAVHNATIGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLH-----DKDRMTVHSGQTNKSALLyDSLQTE 526
Cdd:cd00041    1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLEsspncSYDYLEIYDGPSTSSPLL-GRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 296179444 527 SVPFEgLLSEGNTIRIEFTSDQARAASTFNIRFEA 561
Cdd:cd00041   80 TLPPP-IISSGNSLTVRFRSDSSVTGRGFKATYSA 113
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 637-736 9.88e-19

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 82.05  E-value: 9.88e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   637 GVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSGPQKLYSS-T 710
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSdnceyDYVEIYDGPSASSPLLGRFCGSEAPPPVISSsS 80

                           90       100
                   ....*....|....*....|....*.
gi 296179444   711 PDLTIQFHSDPAglifGKGQGFIMNY 736
Cdd:smart00042  81 NSLTLTFVSDSS----VQKRGFSARY 102
CUB pfam00431
CUB domain;
628-723 1.66e-17

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 78.88  E-value: 1.66e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  628 CGGELSAVAGVVLSPNWPEPYVEGEDCIWKIHVGEEKRIFLDIQFLNLSNS-----DILTIYDGDEVMPHILGQYLGNSG 702
Cdd:pfam00431   1 CGGVLTDSSGSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDHdecgyDYVEIRDGPSASSPLLGRFCGSGI 80

                          90       100
                  ....*....|....*....|.
gi 296179444  703 PQKLYSSTPDLTIQFHSDPAG 723
Cdd:pfam00431  81 PEDIVSSSNQMTIKFVSDASV 101
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 462-559 2.97e-14

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 69.34  E-value: 2.97e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   462 GRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLL--HD---KDRMTVHSGQTNKSALL--YDSLQTESVPFEgll 534
Cdd:smart00042   1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLesSDnceYDYVEIYDGPSASSPLLgrFCGSEAPPPVIS--- 77

                           90       100
                   ....*....|....*....|....*
gi 296179444   535 SEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 745-801 9.41e-14

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 66.33  E-value: 9.41e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 296179444 745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 801
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 745-800 1.11e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 66.40  E-value: 1.11e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 296179444   745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
745-800 1.30e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 63.29  E-value: 1.30e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 296179444  745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFC 800
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CUB pfam00431
CUB domain;
452-559 3.26e-12

CUB domain;


Pssm-ID: 395345 [Multi-domain]  Cd Length: 110  Bit Score: 63.85  E-value: 3.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  452 CGGAVHNATiGRVLSPSYPENTNGSQFCIWTIEAPEGQKLHLHFERLLLHD-----KDRMTVHSGQTNKSALL--Ydslq 524
Cdd:pfam00431   1 CGGVLTDSS-GSISSPNYPNPYPPNKDCVWLIRAPPGFRVKLTFQDFELEDhdecgYDYVEIRDGPSASSPLLgrF---- 75

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 296179444  525 TESVPFEGLLSEGNTIRIEFTSDQARAASTFNIRF 559
Cdd:pfam00431  76 CGSGIPEDIVSSSNQMTIKFVSDASVQKRGFKATY 110
PHA02639 PHA02639
EEV host range protein; Provisional
 745-866 9.48e-10

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 60.83  E-value: 9.48e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 745 CSDLPEIQNGwKTTSHTELVR-GARITYQCDP----GYDIVGSDTLTCQWDLSWSSDPPFCeKIMYCTDPG-EVDHSTRL 818
Cdd:PHA02639  85 CNDPPSIING-KIYNKREMYKvGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPIC-KMINCRFPAlQNGYINGI 162

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 296179444 819 ISDPVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCV 866
Cdd:PHA02639 163 PSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINAT----WFPSIPTCV 206
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 281-388 9.73e-10

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 57.04  E-value: 9.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 281 CSVSFSNP-EGYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRGVDGPTLTVLANQTLL 354
Cdd:cd00041    1 CGGTLTAStSGTISSPNYPNNYPNN-LNCVWTIEAPPGYRIRLTFEDFDLESSPNcsydyLEIYDGPSTSSPLLGRFCGS 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 296179444 355 VEGQVIRSPTNTISVYFRTFQDDGLGTFQLHYQA 388
Cdd:cd00041   80 TLPPPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
PHA02817 PHA02817
EEV Host range protein; Provisional
 743-866 1.28e-09

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 59.57  E-value: 1.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 743 DSCSDLPEIQNGWKTTSHTELVRGARITYQCDPG-----YDIVGSDTLTCQWDLSWSSDPPFCEkIMYCTDPGEVDHSTR 817
Cdd:PHA02817  22 NKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCK-IIRCRFPALQNGFVN 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 296179444 818 LISD-PVLLVGTTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCV 866
Cdd:PHA02817 101 GIPDsKKFYYESEVSFSCKPGFVLIGTKYSVCGINSS----WIPKVPICS 146
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 806-865 1.72e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 54.45  E-value: 1.72e-09
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysRETGTpiWTSRLPHC 865
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITC--LENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 806-866 1.81e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.39  E-value: 1.81e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296179444 806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysreTGTPIWTSRLPHCV 866
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITC----TENGGWSPPPPTCE 57
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 745-866 2.11e-09

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 59.28  E-value: 2.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 745 CSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTC---QWdlswsSDPPFCEkIMYCTDPGevdhstrlISD 821
Cdd:PHA02927 148 CQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCsggEW-----SDPPTCQ-IVKCPHPT--------ISN 213

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 296179444 822 PVLLVG--------TTIQYTCNPGFVLEGSSLLTCYSRETgtpiWTSRLPHCV 866
Cdd:PHA02927 214 GYLSSGfkrsysynDNVDFKCKYGYKLSGSSSSTCSPGNT----WQPELPKCV 262
Sushi pfam00084
Sushi repeat (SCR repeat);
567-624 2.83e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.66  E-value: 2.83e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 296179444  567 CYEP-YIQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:pfam00084   1 CPPPpDIPNGKVSATKNEYNYGASVSYECDPGYRL-VGSPTITCQE--DGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 567-624 7.38e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 52.53  E-value: 7.38e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 296179444   567 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECINvrDPYWNDTEPLC 624
Cdd:smart00032   1 CPPPPdIENGTVTSSSGTYSYGDTVTYSCDPGYTL-IGSSTITCLE--NGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 567-625 2.07e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 51.31  E-value: 2.07e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296179444 567 CYEPY-IQNGNFTTSDPTYNIGTIVEFTCDPGHSLeQGPAIIECI-NVRdpyWNDTEPLCR 625
Cdd:cd00033    1 CPPPPvPENGTVTGSKGSYSYGSTVTYSCNEGYTL-VGSSTITCTeNGG---WSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
806-865 6.49e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 49.81  E-value: 6.49e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  806 CTDPGEVDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSLLTCysRETGTpiWTSRLPHC 865
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITC--QEDGT--WSPPFPEC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 744-866 7.50e-08

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 54.61  E-value: 7.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 744 SCSDLPEIQNGWKTTSHTELVRGARITYQCDPG----YDIVGSDTLTCqWDLSWSSDPPFCeKIMYCTDPGeVDHSTRLI 819
Cdd:PHA02831  77 NCKDPVTILNGYIKNKKDQYSFGDSVTYACKVNklekYSIVGNETVKC-INKQWVPKYPVC-KLIRCKYPA-LQNGFLNV 153

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 296179444 820 SDPVLLVGTTIQYTCNPGFVLEGSSLLTCysreTGTPIWTSRLPHCV 866
Cdd:PHA02831 154 FEKKFYYGDIVNFKCKKGFILLGSSVSTC----DINSIWYPGIPKCV 196
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 393-448 1.43e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 1.43e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444   393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:smart00032   1 CPPPPDIENGTVTSSsgTYSYGDTVTYSCDPGYTLIGSSTITCLENGT--WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 393-448 2.20e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.53  E-value: 2.20e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444 393 CNFPRRPDSGDVTVM--DLHSGGVAHFHCHLGYELQGAKMLTCInaSKPHWSSQEPIC 448
Cdd:cd00033    1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCT--ENGGWSPPPPTC 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 6-239 2.63e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444    6 PPAAGLRGISLFLALLLGSPAAALERDALPEGDASPLGPYLlPSGAPERGSP-GKEHPEERVVTAPPSSSqSAEVLGELV 84
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT-TAGPPAPAPPaAPAAGPPRRLTRPAVAS-LSESRESLP 2799

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   85 LDGTAPSAHHDIPALSPLLPEEARPKHALPPKkklPSLKQVNSARkqlrPKATSAATVQRAGSqpASQGLDLLSSSTEKP 164
Cdd:PHA03247 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPP---TSAQPTAPPP----PPGPPPPSLPLGGS--VAPGGDVRRRPPSRS 2870

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 296179444  165 GppgdpdpiVASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PHA03247 2871 P--------AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 766-866 3.58e-06

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 50.08  E-value: 3.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 766 GARITYQCDPGYDIVGSDTLTCQWDlSWSSDPPFCEKimyCTDPgevDHSTRLISDPVLLVGTTIQYTCNPGFVLEGSSL 845
Cdd:PHA02954 150 GEHITINCDVGYEVIGASYISCTAN-SWNVIPSCQQK---CDIP---SLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPS 222

                         90       100
                 ....*....|....*....|.
gi 296179444 846 LTCYSREtgtpiWTSRLPHCV 866
Cdd:PHA02954 223 STCIDGK-----WNPVLPICV 238
PHA02639 PHA02639
EEV host range protein; Provisional
 736-856 2.13e-05

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 47.35  E-value: 2.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 736 YIEVSRNDSCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLS---WSSDPPFCeKIMYCTDPGEV 812
Cdd:PHA02639  13 YVHGVKSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNnaiWSNKAPFC-MLKECNDPPSI 91

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 296179444 813 DHSTRLISDPVLLVGTTIQYTCNP----GFVLEGSSLLTCYSRETGTP 856
Cdd:PHA02639  92 INGKIYNKREMYKVGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKP 139
CUB smart00042
Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found ...
 290-386 3.21e-05

Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein; This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.


Pssm-ID: 214483 [Multi-domain]  Cd Length: 102  Bit Score: 43.53  E-value: 3.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   290 GYIDSSDYPLLPLNNfLECTYNVTVYTGYGVELQVKSVNLSDGEL-----LSIRgvDGPTLTVLANQTL---LVEGQVIR 361
Cdd:smart00042   1 GTITSPNYPQSYPNN-LDCVWTIRAPPGYRIELQFTDFDLESSDNceydyVEIY--DGPSASSPLLGRFcgsEAPPPVIS 77

                           90       100
                   ....*....|....*....|....*
gi 296179444   362 SPTNTISVYFRTFQDDGLGTFQLHY 386
Cdd:smart00042  78 SSSNSLTLTFVSDSSVQKRGFSARY 102
PHA02639 PHA02639
EEV host range protein; Provisional
 802-881 1.86e-04

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 44.65  E-value: 1.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 802 KIMYCTDPGEVDHS--TRLISDpvLLVGTTIQYTCNPGFVLEGSSLLTCYsRETGTPIWTSRLPHCVLAEAAAETSLEGG 879
Cdd:PHA02639  18 KSIYCDKPDDISNGfiTELMEK--YEIGKLIEYTCNTDYALIGDRFRTCI-KDKNNAIWSNKAPFCMLKECNDPPSIING 94


                 ..
gi 296179444 880 NM 881
Cdd:PHA02639  95 KI 96
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 744-879 3.12e-04

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 43.49  E-value: 3.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 744 SCSDLP------EIQNGWKTTSHTELVRGARITYQCDPGY--DIVGSDTLTCQ---WDLswssdppFCEKIMY-CTDPGE 811
Cdd:PHA02927  19 SCCTIPsrpinmKFKNSVETDANANYNIGDTIEYLCLPGYrkQKMGPIYAKCTgtgWTL-------FNQCIKRrCPSPRD 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444 812 VDHSTRLISDpvLLVGTTIQYTCNPGFVLEGSSLLTCYSRETGTPIWTSRLPHCVLAEAAAETSLEGG 879
Cdd:PHA02927  92 IDNGQLDIGG--VDFGSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNG 157
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 1-234 1.21e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 42.74  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   1 MPAARPPAAGLRGISLFLALLLGSPAA---ALERDALPEGDASPLGPYLL-----PSGAPERGSPGKEHPEERVVTAPPS 72
Cdd:COG5180  111 PAAKTPELAAGALPAPAAAAALPKAKVtreATSASAGVALAAALLQRSDPilakdPDGDSASTLPPPAEKLDKVLTEPRD 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  73 SSQSAEVLGELVLDGTAPSAHHDIPALSPLlPEEARPKHALPPKKKLPSL------KQVNSARKQLRPKATSAATVQRAG 146
Cdd:COG5180  191 ALKDSPEKLDRPKVEVKDEAQEEPPDLTGG-ADHPRPEAASSPKVDPPSTsearsrPATVDAQPEMRPPADAKERRRAAI 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 147 SQPASQGLDLL----------SSSTEKPGPPGDPDPIVASEEASEVPLWLdRKESAVPTTPAPLQIS------PFT---- 206
Cdd:COG5180  270 GDTPAAEPPGLpvleagsepqSDAPEAETARPIDVKGVASAPPATRPVRP-PGGARDPGTPRPGQPTerpagvPEAasda 348

                        250       260
                 ....*....|....*....|....*...
gi 296179444 207 SQPYVAHTLPQRPEPGEPGPdmaQEAPQ 234
Cdd:COG5180  349 GQPPSAYPPAEEAVPGKPLE---QGAPR 373
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
51-239 3.16e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 3.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  51 APERGSPGKEHPEERVVTAPPSSSQSAEVlgelvldGTAPSAHHDIPALSPLLPEEARPKHALPPKKKLPSLKQVNSARK 130
Cdd:PRK07003 361 AVTGGGAPGGGVPARVAGAVPAPGARAAA-------AVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP 433

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444 131 QLRPKATSAATVQRAGSQPASQGLDLLSSSTEKPGPPGDPDPIVASEEASEVPLWLDRKES-AVPTTPAPLQISPFTSQP 209
Cdd:PRK07003 434 ATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPrAAAPSAATPAAVPDARAP 513

                        170       180       190
                 ....*....|....*....|....*....|
gi 296179444 210 YVAHTLPQRPEPGEPGPDMAQEAPQEDTSP 239
Cdd:PRK07003 514 AAASREDAPAAAAPPAPEARPPTPAAAAPA 543
Sushi pfam00084
Sushi repeat (SCR repeat);
393-448 6.97e-03

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 35.55  E-value: 6.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 296179444  393 CNFPRRPDSGDVTV-MDLHS-GGVAHFHCHLGYELQGAKMLTCINASKphWSSQEPIC 448
Cdd:pfam00084   1 CPPPPDIPNGKVSAtKNEYNyGASVSYECDPGYRLVGSPTITCQEDGT--WSPPFPEC 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-242 8.49e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 8.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444    2 PAARPPAAG--LRGISLFLALLLGSPAAALERDALPEGDASP------LGPYLLPSGAPERGSP-------------GKE 60
Cdd:PHA03247 2622 HAPDPPPPSpsPAANEPDPHPPPTVPPPERPRDDPAPGRVSRprrarrLGRAAQASSPPQRPRRraarptvgsltslADP 2701

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444   61 HPEERVVTAPPSSSQSAEVLGELVLDGTAPSAHHDIPALSPLLPEEArpkhALPPKKKLPSLKQVNSARKQLRPKATSAA 140
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP----ATPGGPARPARPPTTAGPPAPAPPAAPAA 2777

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296179444  141 TVQRAGSQPASQGLDLLSSSTEKPGPPGDPDPIVASEEASEVPLWLDRKESAVPTTPAPlqISPFTSQPYVAHTLP---- 216
Cdd:PHA03247 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP--TAPPPPPGPPPPSLPlggs 2855

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 296179444  217 --------QRPEPGEPGPD-----------MAQEAPQEDTSPMAL 242
Cdd:PHA03247 2856 vapggdvrRRPPSRSPAAKpaaparppvrrLARPAVSRSTESFAL 2900
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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