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Conserved domains on  [gi|300794780|ref|NP_001178891|]
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G-protein-signaling modulator 2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 1.87e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 1.87e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 145 LYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457   79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEY 304
Cdd:COG0457  133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                        250       260       270
                 ....*....|....*....|....*....|.
gi 300794780 305 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457  205 QALRKKLAILTLAALAELLLLALALLLALRL 235
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 490-512 1.58e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.80  E-value: 1.58e-06
                           10        20
                   ....*....|....*....|...
gi 300794780   490 DEGFFDLLRRLQSSRMEDQRCHL 512
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 593-615 1.78e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 1.78e-06
                           10        20
                   ....*....|....*....|...
gi 300794780   593 DEDFFDILVKCQGSRLDDQRCAP 615
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
628-649 8.37e-06

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 8.37e-06
                          10        20
                  ....*....|....*....|..
gi 300794780  628 EDFFSLILRSQAKRMDEQRVLL 649
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
543-564 1.03e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.41  E-value: 1.03e-05
                          10        20
                  ....*....|....*....|..
gi 300794780  543 DEFLDLLASSQSRRLDDQRASF 564
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.97e-03

Tetratricopeptide repeat;


:

Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 3.97e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 300794780  324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 1.87e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 1.87e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 145 LYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457   79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEY 304
Cdd:COG0457  133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                        250       260       270
                 ....*....|....*....|....*....|.
gi 300794780 305 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457  205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR_12 pfam13424
Tetratricopeptide repeat;
243-314 1.46e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 1.46e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300794780  243 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 490-512 1.58e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.80  E-value: 1.58e-06
                           10        20
                   ....*....|....*....|...
gi 300794780   490 DEGFFDLLRRLQSSRMEDQRCHL 512
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 593-615 1.78e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 1.78e-06
                           10        20
                   ....*....|....*....|...
gi 300794780   593 DEDFFDILVKCQGSRLDDQRCAP 615
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
594-613 2.97e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.95  E-value: 2.97e-06
                          10        20
                  ....*....|....*....|
gi 300794780  594 EDFFDILVKCQGSRLDDQRC 613
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
GoLoco pfam02188
GoLoco motif;
491-512 3.11e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.95  E-value: 3.11e-06
                          10        20
                  ....*....|....*....|..
gi 300794780  491 EGFFDLLRRLQSSRMEDQRCHL 512
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
628-649 8.37e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 8.37e-06
                          10        20
                  ....*....|....*....|..
gi 300794780  628 EDFFSLILRSQAKRMDEQRVLL 649
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
543-564 1.03e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.41  E-value: 1.03e-05
                          10        20
                  ....*....|....*....|..
gi 300794780  543 DEFLDLLASSQSRRLDDQRASF 564
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 627-649 1.90e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 41.72  E-value: 1.90e-05
                           10        20
                   ....*....|....*....|...
gi 300794780   627 DEDFFSLILRSQAKRMDEQRVLL 649
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 88-376 2.86e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.61  E-value: 2.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  88 DLTLARTIGDQLGEA-------------KASGNLGNTLKVLGNFDEAivccqrhldisRELNDKV-GEARALYNLGNVYH 153
Cdd:NF040586 407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 154 ----AKGkSFGcpgpQD---VGEFPEevrlalqaAVELYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 224
Cdd:NF040586 476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 225 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYRKTLLLA------RQLKDRAVeaqSCYSLG 289
Cdd:NF040586 543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 290 ntytllqDYEKAIEyhlKHLAIAQELKDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksGE--- 361
Cdd:NF040586 620 -------RLEEALE---LAEDTYERYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---GEdhp 686

                        330
                 ....*....|....*..
gi 300794780 362 --LTARLNLSDLQMVLG 376
Cdd:NF040586 687 ftLACRNNLAVLLRALG 703
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 112-376 4.54e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 46.84  E-value: 4.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 112 LKVLGNFDEAIVCCQRHLDISRELNDKVGE--ARALYNLGNVYHAKGKsfgcpgPQDVGEFPEEVrLALQAAVELYEEN- 188
Cdd:NF040586 402 LYLRGDYESARDLAERALERWRERLGPDDRqtLRLRFHLANALRSLGR------YEEARELDEDT-LERQRRVLGLGEDh 474

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 189 -LSLVTALGdRAAQGRAfgnlgnthylLGNFRDAVIAHEQRLLIAKE-FGDKAAE-RRAYSNLGNAYIFLGEFETASEYY 265
Cdd:NF040586 475 pHTLMTAGG-LGADLRA----------LGRFREALELDEETLERHRRvFGEDHPRtLRAANNLAVSLRLLGDYREALELD 543

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 266 RKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAI-------EYHLKHLAIAqelkDRIGEGRACWSLGNAYTALG 336
Cdd:NF040586 544 REVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALdlleealERYREVLGGP----DHPDTLRAAKSLAVALRRAG 619

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 300794780 337 NHDQAMHFAEKHLEISREV-GDKSGE-LTARLNLSDLQMVLG 376
Cdd:NF040586 620 RLEEALELAEDTYERYRRRfGPDHPDtLAAALSLANDLRALG 661
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 542-564 6.16e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.16e-05
                           10        20
                   ....*....|....*....|...
gi 300794780   542 TDEFLDLLASSQSRRLDDQRASF 564
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 282-314 3.58e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 3.58e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 300794780   282 AQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 314
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.97e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 3.97e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 300794780  324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 1.87e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 1.87e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 145 LYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457   79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEY 304
Cdd:COG0457  133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                        250       260       270
                 ....*....|....*....|....*....|.
gi 300794780 305 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457  205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
101-368 1.40e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 85.83  E-value: 1.40e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 101 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQA 180
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGR--------------------YEE 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 181 AVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFET 260
Cdd:COG0457   61 ALADYEQ------ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDE 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 261 ASEYYRKTLLLARQLkdraveAQSCYSLGNTYTLLQDYEKAIEYHLKhlAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 340
Cdd:COG0457  129 AIEAYERALELDPDD------ADALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALL 200

                        250       260
                 ....*....|....*....|....*...
gi 300794780 341 AMHFAEKHLEISREVGDKSGELTARLNL 368
Cdd:COG0457  201 LALEQALRKKLAILTLAALAELLLLALA 228
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 67-351 3.61e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 73.22  E-value: 3.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  67 QLGNAYFYLHDYAKALEYhhhdltLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALY 146
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDL------LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 147 NLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 226
Cdd:COG2956   81 ELAQDYLKAGL--------------------LDRAEELLEK------LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 227 QrllIAKEFGDKAaerRAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHL 306
Cdd:COG2956  135 R---LLKLGPENA---HAYCELAELYLEQGDYDEAIEALEK----ALKLDPDCARAL--LLLAELYLEQGDYEEAIAALE 202

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 300794780 307 KHLAIAQELKDRIGEgracwsLGNAYTALGNHDQAMHFAEKHLEI 351
Cdd:COG2956  203 RALEQDPDYLPALPR------LAELYEKLGDPEEALELLRKALEL 241
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 56-274 3.05e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.56  E-value: 3.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  56 EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIsrel 135
Cdd:COG3914   72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALAL---- 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 136 ndKVGEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLslvtalgdraaqgRAFGNLGNTHYLL 215
Cdd:COG3914  142 --NPDFAEAYLNLGEALRRLGR-------------LEEAIAALRRALELDPDNA-------------EALNNLGNALQDL 193

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 300794780 216 GNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 274
Cdd:COG3914  194 GRLEEAIAAYRRALELDPDN------ADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 178-376 4.75e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.98  E-value: 4.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 178 LQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGE 257
Cdd:COG2956   24 PDKAIDLLEE------ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 258 FETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEGRACWSLGNAYTALGN 337
Cdd:COG2956   92 LDRAEELLEK----LLELDPDDAEAL--RLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGD 159

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 300794780 338 HDQAMHFAEKHLEISREvgdksgELTARLNLSDLQMVLG 376
Cdd:COG2956  160 YDEAIEALEKALKLDPD------CARALLLLAELYLEQG 192
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-350 6.43e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 6.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  29 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTlsaiYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNL 108
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA----HLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLEL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 109 GNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEn 188
Cdd:COG2956   83 AQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGD--------------------WEKAIEVLER- 135

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 189 lslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYRKT 268
Cdd:COG2956  136 -----LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERA 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 269 LllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDRIgegracwSLGNAYTALGNHDQAMHFAEKH 348
Cdd:COG2956  205 L----EQDPDYLPAL--PRLAELYEKLGDPEEALELLRKALELDPSDDLLL-------ALADLLERKEGLEAALALLERQ 271


                 ..
gi 300794780 349 LE 350
Cdd:COG2956  272 LR 273
COG3899 COG3899
Predicted ATPase [General function prediction only];
175-329 8.23e-11

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 65.65  E-value: 8.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  175 RLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSN 247
Cdd:COG3899   718 RGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFeeaeallERALAARALAALAALRHGNPPASARAYAN 797

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  248 LGnaYIFLGEFETASEYYRKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDRIGEGRACWS 327
Cdd:COG3899   798 LG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAA 875


                  ..
gi 300794780  328 LG 329
Cdd:COG3899   876 AA 877
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 175-351 2.14e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 2.14e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 175 RLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIF 254
Cdd:COG3914   51 LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 255 LGEFETASEYYRKtlllARQLKDRAVEAqsCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELkdrigeGRACWSLGNAYTA 334
Cdd:COG3914  125 LGRLEEALAALRR----ALALNPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQD 192

                        170
                 ....*....|....*..
gi 300794780 335 LGNHDQAMHFAEKHLEI 351
Cdd:COG3914  193 LGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 171-376 3.84e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 3.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 171 PEEVRLALQAAVELYEENLSlvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 250
Cdd:COG3914   10 AALAAAALLAAAAAAELALA---AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 251 AYIFLGEFETASEYYRKTLLLARQlkdravEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELkdrigeGRACWSLGN 330
Cdd:COG3914   87 LLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGE 154

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 300794780 331 AYTALGNHDQAMHFAEKHLEIsrevgdKSGELTARLNLSDLQMVLG 376
Cdd:COG3914  155 ALRRLGRLEEAIAALRRALEL------DPDNAEALNNLGNALQDLG 194
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 171-312 8.13e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 8.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 171 PEEVRLALQAAVELYEENLSlvtalgdraaqgrAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGN 250
Cdd:COG3914   94 YEEALALYRRALALNPDNAE-------------ALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGE 154

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 300794780 251 AYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIA 312
Cdd:COG3914  155 ALRRLGRLEEAIAALRR----ALELDPDNAEAL--NNLGNALQDLGRLEEAIAAYRRALELD 210
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 199-352 1.11e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 1.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 199 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDR 278
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE------AFALLGEILLQLGDLDEAIVLLHE----ALELDPD 70

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300794780 279 AVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG4783   71 EPEAR--LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_12 pfam13424
Tetratricopeptide repeat;
243-314 1.46e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 1.46e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300794780  243 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
286-354 5.70e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.46  E-value: 5.70e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 300794780  286 YSLGNTYTLLQDYEKAIEYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 354
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
31-245 2.88e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.32  E-value: 2.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  31 GERLCKSGDCRAGVSFFEAAVQVGTEDlktlSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNLGN 110
Cdd:COG0457   49 GLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGL 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 111 TLKVLGNFDEAIVCCQRHLDISRELndkvgeARALYNLGNVYHAKGKSfgcPGPQDVGEFPEEVRLALQAAVELYEENLS 190
Cdd:COG0457  119 ALLELGRYDEAIEAYERALELDPDD------ADALYNLGIALEKLGRY---EEALELLEKLEAAALAALLAAALGEAALA 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 300794780 191 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 245
Cdd:COG0457  190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 140-314 7.65e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 7.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 140 GEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLslvtalgdraaqgRAFGNLGNTHYLLGNFR 219
Cdd:COG4783    2 ACAEALYALAQALLLAGD-------------YDEAEALLEKALELDPDNP-------------EAFALLGEILLQLGDLD 55

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 220 DAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGEFETASEYYRKTLLLARQlkdravEAQSCYSLGNTYTLLQDYE 299
Cdd:COG4783   56 EAIVLLHEALELDPD------EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPD 123

                        170
                 ....*....|....*
gi 300794780 300 KAIEYHLKHLAIAQE 314
Cdd:COG4783  124 EAIAALEKALELDPD 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 191-304 1.16e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 1.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 191 LVTALGDRAAQ----GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYR 266
Cdd:COG4235    2 AIARLRQALAAnpndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLE 75

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 300794780 267 KtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEY 304
Cdd:COG4235   76 R----ALALDPDNPEAL--YLLGLAAFQQGDYAEAIAA 107
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 165-312 1.48e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 1.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 165 QDVGEFPEEVRLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrA 244
Cdd:COG5010   17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE------L 90

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 300794780 245 YSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIA 312
Cdd:COG5010   91 YYNLALLYSRSGDKDEAKEYYEK----ALALSPDNPNAY--SNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
203-274 1.57e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 1.57e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300794780  203 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 274
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 490-512 1.58e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.80  E-value: 1.58e-06
                           10        20
                   ....*....|....*....|...
gi 300794780   490 DEGFFDLLRRLQSSRMEDQRCHL 512
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 593-615 1.78e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 1.78e-06
                           10        20
                   ....*....|....*....|...
gi 300794780   593 DEDFFDILVKCQGSRLDDQRCAP 615
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
594-613 2.97e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.95  E-value: 2.97e-06
                          10        20
                  ....*....|....*....|
gi 300794780  594 EDFFDILVKCQGSRLDDQRC 613
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
GoLoco pfam02188
GoLoco motif;
491-512 3.11e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.95  E-value: 3.11e-06
                          10        20
                  ....*....|....*....|..
gi 300794780  491 EGFFDLLRRLQSSRMEDQRCHL 512
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 26-188 3.36e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 3.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  26 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLktlsAIYSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKAS 105
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEAR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 106 GNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELY 185
Cdd:COG4783   76 LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGR-------------PDEAIAALEKALELD 136


                 ...
gi 300794780 186 EEN 188
Cdd:COG4783  137 PDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
102-187 3.51e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 3.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  102 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQ 179
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGR-------------YEEALELLE 69


                  ....*...
gi 300794780  180 AAVELYEE 187
Cdd:pfam13424  70 RALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
78-341 6.03e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.86  E-value: 6.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780   78 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYhakgk 157
Cdd:COG3899   728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL----- 802

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  158 sfgcpgpqdvgefpeevRLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 237
Cdd:COG3899   803 -----------------LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  238 KAAERRAYSNLGNAYIFLGEFETASEYYRKTLLLAR------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAI 311
Cdd:COG3899   866 AALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945

                         250       260       270
                  ....*....|....*....|....*....|
gi 300794780  312 AQELKDRIGEGRACWSLGNAYTALGNHDQA 341
Cdd:COG3899   946 AAAAAAAALAAALALAAAAAAAAAAALAAA 975
TPR_12 pfam13424
Tetratricopeptide repeat;
61-134 7.32e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.30  E-value: 7.32e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 300794780   61 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 134
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
141-324 8.27e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.60  E-value: 8.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 141 EARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEenlslvTALGDRAAQGRAFGNLGNTHYLLGNFRD 220
Cdd:COG4785   72 LAQLYYERGVAYDSLGD--------------------YDLAIADFD------QALELDPDLAEAYNNRGLAYLLLGDYDA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 221 AVIAheqrlliakeFgDKAAERR-----AYSNLGNAYIFLGEFETASEYYRKTLLLARQLKDRAVEAQSCYslgntytLL 295
Cdd:COG4785  126 ALED----------F-DRALELDpdyayAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAE-------RK 187

                        170       180
                 ....*....|....*....|....*....
gi 300794780 296 QDYEKAIEYHLKHLAIAQELKDRIGEGRA 324
Cdd:COG4785  188 LDPEKALALLLEDWATAYLLQGDTEEARE 216
GoLoco pfam02188
GoLoco motif;
628-649 8.37e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 8.37e-06
                          10        20
                  ....*....|....*....|..
gi 300794780  628 EDFFSLILRSQAKRMDEQRVLL 649
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 243-352 9.68e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 9.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 243 RAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEG 322
Cdd:COG4235   18 EGWLLLGRAYLRLGRYDEALAAYEK----ALRLDPDNADAL--LDLAEALLAAGDTEEAEELLERALALDPD------NP 85

                         90       100       110
                 ....*....|....*....|....*....|
gi 300794780 323 RACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG4235   86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
GoLoco pfam02188
GoLoco motif;
543-564 1.03e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.41  E-value: 1.03e-05
                          10        20
                  ....*....|....*....|..
gi 300794780  543 DEFLDLLASSQSRRLDDQRASF 564
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 627-649 1.90e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 41.72  E-value: 1.90e-05
                           10        20
                   ....*....|....*....|...
gi 300794780   627 DEDFFSLILRSQAKRMDEQRVLL 649
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
251-354 2.59e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 2.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 251 AYIFLGEFETASEYYRKTLLLARQlkdravEAQSCYSLGNTYTLLQDYEKAIEYHlKHLAIAQElkdrigEGRACWSLGN 330
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-KALKLDPN------NAEALLNLAE 67

                         90       100
                 ....*....|....*....|....
gi 300794780 331 AYTALGNHDQAMHFAEKHLEISRE 354
Cdd:COG3063   68 LLLELGDYDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
173-352 2.81e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.06  E-value: 2.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 173 EVRLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAaerRAYSNLGNAY 252
Cdd:COG4785    7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA---QLYYERGVAY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 253 IFLGEFETAseyyRKTLLLARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYhlkhLAIAQELKDRIGEgrACWSLGNAY 332
Cdd:COG4785   84 DSLGDYDLA----IADFDQALELDPDLAEAY--NNRGLAYLLLGDYDAALED----FDRALELDPDYAY--AYLNRGIAL 151

                        170       180
                 ....*....|....*....|
gi 300794780 333 TALGNHDQAMHFAEKHLEIS 352
Cdd:COG4785  152 YYLGRYELAIADLEKALELD 171
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 88-376 2.86e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.61  E-value: 2.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  88 DLTLARTIGDQLGEA-------------KASGNLGNTLKVLGNFDEAivccqrhldisRELNDKV-GEARALYNLGNVYH 153
Cdd:NF040586 407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 154 ----AKGkSFGcpgpQD---VGEFPEevrlalqaAVELYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 224
Cdd:NF040586 476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 225 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYRKTLLLA------RQLKDRAVeaqSCYSLG 289
Cdd:NF040586 543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 290 ntytllqDYEKAIEyhlKHLAIAQELKDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksGE--- 361
Cdd:NF040586 620 -------RLEEALE---LAEDTYERYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---GEdhp 686

                        330
                 ....*....|....*..
gi 300794780 362 --LTARLNLSDLQMVLG 376
Cdd:NF040586 687 ftLACRNNLAVLLRALG 703
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 248-352 3.41e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 3.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 248 LGNAYIFLGEFETASEYYRKTLllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEGRACWS 327
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEAL----ELDPETVEAH--LALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                         90       100
                 ....*....|....*....|....*
gi 300794780 328 LGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG2956   82 LAQDYLKAGLLDRAEELLEKLLELD 106
TPR_7 pfam13176
Tetratricopeptide repeat;
284-318 4.02e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.99  E-value: 4.02e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 300794780  284 SCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDR 318
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 112-376 4.54e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 46.84  E-value: 4.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 112 LKVLGNFDEAIVCCQRHLDISRELNDKVGE--ARALYNLGNVYHAKGKsfgcpgPQDVGEFPEEVrLALQAAVELYEEN- 188
Cdd:NF040586 402 LYLRGDYESARDLAERALERWRERLGPDDRqtLRLRFHLANALRSLGR------YEEARELDEDT-LERQRRVLGLGEDh 474

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 189 -LSLVTALGdRAAQGRAfgnlgnthylLGNFRDAVIAHEQRLLIAKE-FGDKAAE-RRAYSNLGNAYIFLGEFETASEYY 265
Cdd:NF040586 475 pHTLMTAGG-LGADLRA----------LGRFREALELDEETLERHRRvFGEDHPRtLRAANNLAVSLRLLGDYREALELD 543

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 266 RKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAI-------EYHLKHLAIAqelkDRIGEGRACWSLGNAYTALG 336
Cdd:NF040586 544 REVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALdlleealERYREVLGGP----DHPDTLRAAKSLAVALRRAG 619

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 300794780 337 NHDQAMHFAEKHLEISREV-GDKSGE-LTARLNLSDLQMVLG 376
Cdd:NF040586 620 RLEEALELAEDTYERYRRRfGPDHPDtLAAALSLANDLRALG 661
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 542-564 6.16e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.16e-05
                           10        20
                   ....*....|....*....|...
gi 300794780   542 TDEFLDLLASSQSRRLDDQRASF 564
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 239-376 9.47e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 9.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 239 AAERRAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdr 318
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEK----ALELDPDNPEAF--ALLGEILLQLGDLDEAIVLLHEALELDPD---- 70

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 300794780 319 igEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDksgeltARLNLSDLQMVLG 376
Cdd:COG4783   71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALG 120
TPR_12 pfam13424
Tetratricopeptide repeat;
142-234 1.06e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  142 ARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR 219
Cdd:pfam13424   3 ATALNNLAAVLRRLGR--------------------YDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYE 62

                          90
                  ....*....|....*
gi 300794780  220 DAVIAHEQRLLIAKE 234
Cdd:pfam13424  63 EALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
172-318 1.27e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 172 EEVRLALQAAVELYEENLSLVTALGDRAaqgRAFGNLGNTHYLLGNFRDAVIAHEQRLliaKEFGDKAaerRAYSNLGNA 251
Cdd:COG4785   46 LALAAAALAAAALAAERIDRALALPDLA---QLYYERGVAYDSLGDYDLAIADFDQAL---ELDPDLA---EAYNNRGLA 116

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300794780 252 YIFLGEFETASEYYRKTLllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDR 318
Cdd:COG4785  117 YLLLGDYDAALEDFDRAL----ELDPDYAYAY--LNRGIALYYLGRYELAIADLEKALELDPNDPER 177
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 194-352 2.10e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 2.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 194 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKtlllAR 273
Cdd:COG5010    6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----AL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 300794780 274 QLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQelkdriGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG5010   82 QLDPNNPELY--YNLALLYSRSGDKDEAKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 179-267 2.15e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 2.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 179 QAAVELYEEnlsLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEF 258
Cdd:COG1729   10 DEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDY 83


                 ....*....
gi 300794780 259 ETASEYYRK 267
Cdd:COG1729   84 DKARATLEE 92
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 212-304 2.23e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 2.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 212 HYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKtllLARQLKDRAVEAQSCYSLGNT 291
Cdd:COG1729    3 LLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLS 76

                         90
                 ....*....|...
gi 300794780 292 YTLLQDYEKAIEY 304
Cdd:COG1729   77 YLELGDYDKARAT 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 251-341 3.11e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 251 AYIFLGEFETASEYYRKtllLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKhlaIAQELKDRIGEGRACWSLGN 330
Cdd:COG1729    2 ALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGL 75

                         90
                 ....*....|.
gi 300794780 331 AYTALGNHDQA 341
Cdd:COG1729   76 SYLELGDYDKA 86
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 282-314 3.58e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 3.58e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 300794780   282 AQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 314
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
243-274 4.14e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 4.14e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 300794780  243 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 274
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
102-131 7.11e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 7.11e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 300794780  102 AKASGNLGNTLKVLGNFDEAIVCCQRHLDI 131
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 243-274 7.13e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 7.13e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 300794780   243 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 274
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 107-230 1.14e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.60  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 107 NLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYE 186
Cdd:COG4235   22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGD-------------TEEAEELLERALALDP 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 300794780 187 ENLslvtalgdraaqgRAFGNLGNTHYLLGNFRDAvIAHEQRLL 230
Cdd:COG4235   83 DNP-------------EALYLLGLAAFQQGDYAEA-IAAWQKLL 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 57-233 1.19e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  57 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREln 136
Cdd:COG5010    9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 137 dkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLslvtalgdraaqgRAFGNLGNTHYLLG 216
Cdd:COG5010   87 ----NPELYYNLALLYSRSGD-------------KDEAKEYYEKALALSPDNP-------------NAYSNLAALLLSLG 136

                        170
                 ....*....|....*..
gi 300794780 217 NFRDAVIAHEQRLLIAK 233
Cdd:COG5010  137 QDDEAKAALQRALGTSP 153
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 102-134 1.22e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 1.22e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 300794780   102 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 134
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 142-269 1.29e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 142 ARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLSlvtalgdraaqgrAFGNLGNTHYLLGNFRDA 221
Cdd:COG4235   17 AEGWLLLGRAYLRLGR-------------YDEALAAYEKALRLDPDNAD-------------ALLDLAEALLAAGDTEEA 70

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 300794780 222 VIAHEQRLLIAKEFGdkaaerRAYSNLGNAYIFLGEFETASEYYRKTL 269
Cdd:COG4235   71 EELLERALALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLL 112
COG3899 COG3899
Predicted ATPase [General function prediction only];
25-283 1.38e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.15  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780   25 LELALE-GERLCKSGDCRAGVSFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 96
Cdd:COG3899   745 LALLLElAEALYLAGRFEEAEALLERALAARAlaalaalRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLG 824

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780   97 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYnlgnvyhakgksfgcpgpqdvGEFPEEVRL 176
Cdd:COG3899   825 DRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA---------------------AAAAAAAAA 883

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  177 ALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 256
Cdd:COG3899   884 AALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAA 963

                         250       260
                  ....*....|....*....|....*..
gi 300794780  257 EFETASEYYRKTLLLARQLKDRAVEAQ 283
Cdd:COG3899   964 AAAAAAAALAAAAAAAAAAAAAAAAAA 990
TPR_7 pfam13176
Tetratricopeptide repeat;
244-279 2.31e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.98  E-value: 2.31e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 300794780  244 AYSNLGNAYIFLGEFETASEYYRKTLLLARQLKDRA 279
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_1 pfam00515
Tetratricopeptide repeat;
282-314 2.46e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 2.46e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 300794780  282 AQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 314
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_11 pfam13414
TPR repeat;
109-156 3.24e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.91  E-value: 3.24e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 300794780  109 GNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARALYNLGNVYHAKG 156
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDN------PEAYYNLGLAYYKLG 42
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.97e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 3.97e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 300794780  324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
61-269 4.14e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 4.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  61 LSAIYSQLGNAYFYLHDYAKALEyhhhDLTLArtIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLdisrELNDKvg 140
Cdd:COG4785   72 LAQLYYERGVAYDSLGDYDLAIA----DFDQA--LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL----ELDPD-- 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 141 EARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENlslvtalgdraaqgrafgnlgnthyllgnfrd 220
Cdd:COG4785  140 YAYAYLNRGIALYYLGR-------------YELAIADLEKALELDPND-------------------------------- 174

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 300794780 221 aVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKTL 269
Cdd:COG4785  175 -PERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLAL 222
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
212-315 4.90e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 4.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 212 HYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRktlllARQLKDRAVEAQscYSLGNT 291
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAEAL--LNLAEL 68

                         90       100
                 ....*....|....*....|....
gi 300794780 292 YTLLQDYEKAIEYHLKHLAIAQEL 315
Cdd:COG3063   69 LLELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
178-275 5.45e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 5.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780 178 LQAAVELYEENLSLvtalgdRAAQGRAFGNLGNTHYLLGNFRDAvIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGE 257
Cdd:COG3063    8 LEEAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAE------ALLNLAELLLELGD 74

                         90
                 ....*....|....*...
gi 300794780 258 FETASEYYRKTLLLARQL 275
Cdd:COG3063   75 YDEALAYLERALELDPSA 92
TPR_8 pfam13181
Tetratricopeptide repeat;
243-267 6.62e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.68  E-value: 6.62e-03
                          10        20
                  ....*....|....*....|....*
gi 300794780  243 RAYSNLGNAYIFLGEFETASEYYRK 267
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEK 26
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 64-94 7.64e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 7.64e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 300794780    64 IYSQLGNAYFYLHDYAKALEYHHHDLTLART 94
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
71-157 9.51e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.92  E-value: 9.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300794780  71 AYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVcCQRHLDISRElndkvgEARALYNLGN 150
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDP------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67


                 ....*..
gi 300794780 151 VYHAKGK 157
Cdd:COG3063   68 LLLELGD 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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