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Conserved domains on  [gi|316983171|ref|NP_001186916|]
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NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 isoform 3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUF_B6 super family cl10760
NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the ...
 3-97 1.99e-47

NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol.


The actual alignment was detected with superfamily member pfam09782:

Pssm-ID: 462896  Cd Length: 126  Bit Score: 147.20  E-value: 1.99e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316983171    3 GYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM---------------------- 60
Cdd:pfam09782   1 GYTPDEKLRLEQLRELRRQWLKDQELSPREPVVVPERLNPIERFWRAFLDKKPLWGLYtakayrfgvfkllmvlipawiv 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 316983171   61 ---------EKPYGIVEKKSRIFPGDTILETGEVIPPMKEFPDQHH 97
Cdd:pfam09782  81 hyyfkyhvnKKPYRIVSSKPRIFPGDTILETGEVIPPPADYPARHH 126
 
Name Accession Description Interval E-value
NDUF_B6 pfam09782
NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the ...
 3-97 1.99e-47

NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol.


Pssm-ID: 462896  Cd Length: 126  Bit Score: 147.20  E-value: 1.99e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316983171    3 GYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM---------------------- 60
Cdd:pfam09782   1 GYTPDEKLRLEQLRELRRQWLKDQELSPREPVVVPERLNPIERFWRAFLDKKPLWGLYtakayrfgvfkllmvlipawiv 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 316983171   61 ---------EKPYGIVEKKSRIFPGDTILETGEVIPPMKEFPDQHH 97
Cdd:pfam09782  81 hyyfkyhvnKKPYRIVSSKPRIFPGDTILETGEVIPPPADYPARHH 126
 
Name Accession Description Interval E-value
NDUF_B6 pfam09782
NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the ...
 3-97 1.99e-47

NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol.


Pssm-ID: 462896  Cd Length: 126  Bit Score: 147.20  E-value: 1.99e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 316983171    3 GYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPQKMGPMEKFWNKFLENKSPWRKM---------------------- 60
Cdd:pfam09782   1 GYTPDEKLRLEQLRELRRQWLKDQELSPREPVVVPERLNPIERFWRAFLDKKPLWGLYtakayrfgvfkllmvlipawiv 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 316983171   61 ---------EKPYGIVEKKSRIFPGDTILETGEVIPPMKEFPDQHH 97
Cdd:pfam09782  81 hyyfkyhvnKKPYRIVSSKPRIFPGDTILETGEVIPPPADYPARHH 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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