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Conserved domains on  [gi|320089548|ref|NP_001188479|]
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complement factor H-related protein 4 isoform 1 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 339-577 6.17e-16

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 78.16  E-value: 6.17e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 339 DIEIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSI--TCLQNGWSAQPICIKF-CDMPV-FENSRAKSNGMRFK 414
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGYRK---QKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 415 lhDTLDYECYDGYEI-----SYGN--TTGSIVCGEDGwshfPTCynSSEKCGPPPPISNGDTTSFLlKVYVPQSRVEYQC 487
Cdd:PHA02927 106 --SSITYSCNSGYQLigeskSYCElgSTGSMVWNPEA----PIC--ESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 488 QSYYELQGSNYVTCSNGEWSEPP-----RCIHPCIiteenmnkNNIQLkgKSDIKYYAKTGDTIEFMCKLGYNANTSVLS 562
Cdd:PHA02927 177 NSGYSLIGNSGVLCSGGEWSDPPtcqivKCPHPTI--------SNGYL--SSGFKRSYSYNDNVDFKCKYGYKLSGSSSS 246

                        250
                 ....*....|....*
gi 320089548 563 FQAVCREGIVEYPRC 577
Cdd:PHA02927 247 TCSPGNTWQPELPKC 261
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 92-281 3.79e-13

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 69.68  E-value: 3.79e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  92 DVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSI--TCLQNGWSTQPICIKF-CDMPV-FENSRAKSNGMWFK 167
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGY---RKQKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 168 lhDTLDYECYDGYESsYGNTTDSIVCGEDG---WS-HLPTCynSSENCGPPPPISNGDTTSFpQKVYLPWSRVEYQCQSY 243
Cdd:PHA02927 106 --SSITYSCNSGYQL-IGESKSYCELGSTGsmvWNpEAPIC--ESVKCQSPPSISNGRHNGY-EDFYTDGSVVTYSCNSG 179

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089548 244 YELQGSKYVTCSNGDWSEPPRCISMKpCEFPEIQHGHL 281
Cdd:PHA02927 180 YSLIGNSGVLCSGGEWSDPPTCQIVK-CPHPTISNGYL 216
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 339-577 6.17e-16

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 78.16  E-value: 6.17e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 339 DIEIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSI--TCLQNGWSAQPICIKF-CDMPV-FENSRAKSNGMRFK 414
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGYRK---QKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 415 lhDTLDYECYDGYEI-----SYGN--TTGSIVCGEDGwshfPTCynSSEKCGPPPPISNGDTTSFLlKVYVPQSRVEYQC 487
Cdd:PHA02927 106 --SSITYSCNSGYQLigeskSYCElgSTGSMVWNPEA----PIC--ESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 488 QSYYELQGSNYVTCSNGEWSEPP-----RCIHPCIiteenmnkNNIQLkgKSDIKYYAKTGDTIEFMCKLGYNANTSVLS 562
Cdd:PHA02927 177 NSGYSLIGNSGVLCSGGEWSDPPtcqivKCPHPTI--------SNGYL--SSGFKRSYSYNDNVDFKCKYGYKLSGSSSS 246

                        250
                 ....*....|....*
gi 320089548 563 FQAVCREGIVEYPRC 577
Cdd:PHA02927 247 TCSPGNTWQPELPKC 261
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 92-281 3.79e-13

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 69.68  E-value: 3.79e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  92 DVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSI--TCLQNGWSTQPICIKF-CDMPV-FENSRAKSNGMWFK 167
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGY---RKQKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 168 lhDTLDYECYDGYESsYGNTTDSIVCGEDG---WS-HLPTCynSSENCGPPPPISNGDTTSFpQKVYLPWSRVEYQCQSY 243
Cdd:PHA02927 106 --SSITYSCNSGYQL-IGESKSYCELGSTGsmvWNpEAPIC--ESVKCQSPPSISNGRHNGY-EDFYTDGSVVTYSCNSG 179

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089548 244 YELQGSKYVTCSNGDWSEPPRCISMKpCEFPEIQHGHL 281
Cdd:PHA02927 180 YSLIGNSGVLCSGGEWSDPPTCQIVK-CPHPTISNGYL 216
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 458-513 7.25e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.78  E-value: 7.25e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089548 458 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRCI 513
Cdd:cd00033    1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 211-266 3.05e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 3.05e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089548 211 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRCI 266
Cdd:cd00033    1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 211-265 2.19e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.91  E-value: 2.19e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548   211 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRC 265
Cdd:smart00032   1 CPPPPDIENGTVTS-SSGTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
458-512 4.34e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.11  E-value: 4.34e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548  458 CGPPPPISNGDTTSfLLKVYVPQSRVEYQCQSYYELQGSNYVTCS-NGEWS-EPPRC 512
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 458-512 8.71e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 8.71e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548   458 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRC 512
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
211-265 9.54e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 43.26  E-value: 9.54e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548  211 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTCS-NGDWS-EPPRC 265
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 339-577 6.17e-16

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 78.16  E-value: 6.17e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 339 DIEIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSI--TCLQNGWSAQPICIKF-CDMPV-FENSRAKSNGMRFK 414
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGYRK---QKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 415 lhDTLDYECYDGYEI-----SYGN--TTGSIVCGEDGwshfPTCynSSEKCGPPPPISNGDTTSFLlKVYVPQSRVEYQC 487
Cdd:PHA02927 106 --SSITYSCNSGYQLigeskSYCElgSTGSMVWNPEA----PIC--ESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 488 QSYYELQGSNYVTCSNGEWSEPP-----RCIHPCIiteenmnkNNIQLkgKSDIKYYAKTGDTIEFMCKLGYNANTSVLS 562
Cdd:PHA02927 177 NSGYSLIGNSGVLCSGGEWSDPPtcqivKCPHPTI--------SNGYL--SSGFKRSYSYNDNVDFKCKYGYKLSGSSSS 246

                        250
                 ....*....|....*
gi 320089548 563 FQAVCREGIVEYPRC 577
Cdd:PHA02927 247 TCSPGNTWQPELPKC 261
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 92-281 3.79e-13

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 69.68  E-value: 3.79e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  92 DVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSI--TCLQNGWSTQPICIKF-CDMPV-FENSRAKSNGMWFK 167
Cdd:PHA02927  29 NMKFKNSVETDANANYNIGDTIEYLCLPGY---RKQKMGPIyaKCTGTGWTLFNQCIKRrCPSPRdIDNGQLDIGGVDFG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 168 lhDTLDYECYDGYESsYGNTTDSIVCGEDG---WS-HLPTCynSSENCGPPPPISNGDTTSFpQKVYLPWSRVEYQCQSY 243
Cdd:PHA02927 106 --SSITYSCNSGYQL-IGESKSYCELGSTGsmvWNpEAPIC--ESVKCQSPPSISNGRHNGY-EDFYTDGSVVTYSCNSG 179

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089548 244 YELQGSKYVTCSNGDWSEPPRCISMKpCEFPEIQHGHL 281
Cdd:PHA02927 180 YSLIGNSGVLCSGGEWSDPPTCQIVK-CPHPTISNGYL 216
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 317-513 4.55e-12

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 66.60  E-value: 4.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 317 YIHCTQDGWLPTVPCLRTCSKSDIEIENGFISESSSIYilNKEIQYKCKPGY-------ATADGNSSGSITclqngWSAQ 389
Cdd:PHA02927  67 YAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYqligeskSYCELGSTGSMV-----WNPE 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 390 -PIC--IKFCDMPVFENSRAKSNGMRFKLHDTLDYECYDGYEIsYGNTtgSIVCGEDGWSHFPTCynSSEKCgPPPPISN 466
Cdd:PHA02927 140 aPICesVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSL-IGNS--GVLCSGGEWSDPPTC--QIVKC-PHPTISN 213

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 320089548 467 GDTTSFLLKVYVPQSRVEYQCQSYYELQGSNYVTCSNGEWSEP--PRCI 513
Cdd:PHA02927 214 GYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKCV 262
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 70-266 9.04e-12

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 65.83  E-value: 9.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  70 YIHCTQDGWSPTVPCLRTCSKSDVEIENGFISESSSIYilNEETQYNCKPGY-------ATAEGNSSGSITclqngWSTQ 142
Cdd:PHA02927  67 YAKCTGTGWTLFNQCIKRRCPSPRDIDNGQLDIGGVDF--GSSITYSCNSGYqligeskSYCELGSTGSMV-----WNPE 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 143 -PIC--IKFCDMPVFENSRAKSNGMWFKLHDTLDYECYDGYeSSYGNTtdSIVCGEDGWSHLPTCynSSENCgPPPPISN 219
Cdd:PHA02927 140 aPICesVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGY-SLIGNS--GVLCSGGEWSDPPTC--QIVKC-PHPTISN 213

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 320089548 220 GDTTSFPQKVYLPWSRVEYQCQSYYELQGSKYVTCSNGDWSEP--PRCI 266
Cdd:PHA02927 214 GYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPKCV 262
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 458-513 7.25e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.78  E-value: 7.25e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089548 458 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRCI 513
Cdd:cd00033    1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 211-266 3.05e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 3.05e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320089548 211 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRCI 266
Cdd:cd00033    1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSpPPPTCE 57
PHA02639 PHA02639
EEV host range protein; Provisional
 88-272 1.39e-07

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 53.51  E-value: 1.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  88 CSKSDvEIENGFISESSSIYILNEETQYNCKPGYATAEGNSSGSITCLQNG-WSTQ-PIC-IKFC-DMPVFENSRAKSNG 163
Cdd:PHA02639  22 CDKPD-DISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAiWSNKaPFCmLKECnDPPSIINGKIYNKR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 164 MWFKLHDTLDYECYDGYESSYGNT-TDSIVCGED-GWS-HLPTCynSSENCgPPPPISNGDTTSFP-QKVYLPWSRVEYQ 239
Cdd:PHA02639 101 EMYKVGDEIYYVCNEHKGVQYSLVgNEKITCIQDkSWKpDPPIC--KMINC-RFPALQNGYINGIPsNKKFYYKTRVGFS 177

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 320089548 240 CQSYYELQGSKYVTCS-NGDW-SEPPRCISMKPCE 272
Cdd:PHA02639 178 CKSGFDLVGEKYSTCNiNATWfPSIPTCVRNKPID 212
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 211-265 2.19e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.91  E-value: 2.19e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548   211 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTC-SNGDWS-EPPRC 265
Cdd:smart00032   1 CPPPPDIENGTVTS-SSGTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
458-512 4.34e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.11  E-value: 4.34e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548  458 CGPPPPISNGDTTSfLLKVYVPQSRVEYQCQSYYELQGSNYVTCS-NGEWS-EPPRC 512
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 458-512 8.71e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.98  E-value: 8.71e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548   458 CGPPPPISNGDTTSFLlKVYVPQSRVEYQCQSYYELQGSNYVTC-SNGEWS-EPPRC 512
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSpPPPTC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 224-368 2.68e-06

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 49.22  E-value: 2.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 224 SFPQKVYLPWSRVEYQCQSYYElqgSKYVTCSNGDWSEPPRCISMKPCEFP-EIQHGhlYYENTRRPYfpvATGQSYSYY 302
Cdd:PHA02831  34 SYENKVYEENENLEYKCNNNFD---KVFVTCNNGSWSTKNMCIGKRNCKDPvTILNG--YIKNKKDQY---SFGDSVTYA 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548 303 CDQNFVTP-SGSYWDYIHCTQDGWLPTVPCLRTCSKSDIEIENGFISESSSIYILNKEIQYKCKPGY 368
Cdd:PHA02831 106 CKVNKLEKySIVGNETVKCINKQWVPKYPVCKLIRCKYPALQNGFLNVFEKKFYYGDIVNFKCKKGF 172
PHA02639 PHA02639
EEV host range protein; Provisional
 335-513 8.64e-06

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 47.74  E-value: 8.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 335 CSKSDiEIENGFISESSSIYILNKEIQYKCKPGYATADGNSSGSITCLQNG-WSAQ-PIC-IKFC-DMPVFENSRAKSNG 410
Cdd:PHA02639  22 CDKPD-DISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAiWSNKaPFCmLKECnDPPSIINGKIYNKR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 411 MRFKLHDTLDYECYDGYEISY---GNTtgSIVCGEDgwshfptcynSSEKCGPP---------PPISNGDTTSFLL-KVY 477
Cdd:PHA02639 101 EMYKVGDEIYYVCNEHKGVQYslvGNE--KITCIQD----------KSWKPDPPickmincrfPALQNGYINGIPSnKKF 168

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320089548 478 VPQSRVEYQCQSYYELQGSNYVTCS-NGEW-SEPPRCI 513
Cdd:PHA02639 169 YYKTRVGFSCKSGFDLVGEKYSTCNiNATWfPSIPTCV 206
Sushi pfam00084
Sushi repeat (SCR repeat);
211-265 9.54e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 43.26  E-value: 9.54e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548  211 CGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSYYELQGSKYVTCS-NGDWS-EPPRC 265
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 204-351 7.25e-05

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 44.55  E-value: 7.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 204 CYNSSENCGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSY-----YELQGSKYVTCS-NGDWS-EPPRCiSMKPCEFPEI 276
Cdd:PHA02817  17 SLCDLNKCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEkDGKWNkEFPVC-KIIRCRFPAL 94

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320089548 277 QHGHLY-YENTRRPYFPvatgQSYSYYCDQNFVTPSGSYwdYIHCTQDGWLPTVPclrTCSKSDIEIENGFISESS 351
Cdd:PHA02817  95 QNGFVNgIPDSKKFYYE----SEVSFSCKPGFVLIGTKY--SVCGINSSWIPKVP---ICSRDNITYNKIYINKVN 161
PHA02831 PHA02831
EEV host range protein; Provisional
 84-266 1.07e-04

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 44.21  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  84 CLRTCSKSDVEIENgFISESSSIYILNEETQYNCKPGYataegnSSGSITCLQNGWSTQPICI--KFCDMPV-FENSRAK 160
Cdd:PHA02831  18 CICVFNKNDAKYSN-VDSYENKVYEENENLEYKCNNNF------DKVFVTCNNGSWSTKNMCIgkRNCKDPVtILNGYIK 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 161 SNGMWFKLHDTLDYECYDGYESSY---GNTTdsIVCGEDGW-SHLPTCynSSENCgPPPPISNGDTTSFPQKVYLPwSRV 236
Cdd:PHA02831  91 NKKDQYSFGDSVTYACKVNKLEKYsivGNET--VKCINKQWvPKYPVC--KLIRC-KYPALQNGFLNVFEKKFYYG-DIV 164

                        170       180       190
                 ....*....|....*....|....*....|..
gi 320089548 237 EYQCQSYYELQGSKYVTCS-NGDW-SEPPRCI 266
Cdd:PHA02831 165 NFKCKKGFILLGSSVSTCDiNSIWyPGIPKCV 196
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 149-394 1.82e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 43.92  E-value: 1.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 149 CDMPVFENSRAKSNGMWFKLHDTLDYECYDGYESSYGNTtdsiVCGEDGWSHLPTCYNSSEncgppppISNGDTTSFPQK 228
Cdd:PHA02954  21 CTVPTMNNAKLTSTETSFNDKQKVTFTCDSGYYSLDPNA----VCETDKWKYENPCKKMCT-------VSDYVSELYDKP 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 229 VYLPWSRVEYQCQSYyelqgSKYVTCS----NGDWSEPPRCISMKpCEFPEIQHGHLyyENTRRPYfpvATGQSYSYYCD 304
Cdd:PHA02954  90 LYEVNSTITLICKDE-----TKYFRCEekngNTSWNDTVTCPNAE-CQPLQLEHGSC--QPVKEKY---SFGEHITINCD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 305 QNFVTPSGSywdYIHCTQDGWLPTVPCLRTCSKSdiEIENGFISESSsiYILNKEIQYKCKPGYATADGNSSgsiTCLQN 384
Cdd:PHA02954 159 VGYEVIGAS---YISCTANSWNVIPSCQQKCDIP--SLSNGLISGST--FSIGGVIHLSCKSGFTLTGSPSS---TCIDG 228

                        250
                 ....*....|.
gi 320089548 385 GWS-AQPICIK 394
Cdd:PHA02954 229 KWNpVLPICVR 239
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 341-393 2.89e-04

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 38.98  E-value: 2.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320089548 341 EIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSITCLQNG-WS-AQPICI 393
Cdd:cd00033    6 VPENGTVTGSKGSYSYGSTVTYSCNEGYTL---VGSSTITCTENGgWSpPPPTCE 57
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 78-213 3.01e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 43.15  E-value: 3.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  78 WSPTVPCLRTCSKSdVEIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSITCLQNGWSTQPICIKFCDMPVFENS 157
Cdd:PHA02954 119 WNDTVTCPNAECQP-LQLEHGSCQPVKEKYSFGEHITINCDVGY---EVIGASYISCTANSWNVIPSCQQKCDIPSLSNG 194

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548 158 RAksNGMWFKLHDTLDYECYDGYESSygnTTDSIVCGEDGWSH-LPTCYNSSENCGP 213
Cdd:PHA02954 195 LI--SGSTFSIGGVIHLSCKSGFTLT---GSPSSTCIDGKWNPvLPICVRSNEEFDP 246
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 94-146 6.55e-04

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 38.21  E-value: 6.55e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320089548  94 EIENGFISESSSIYILNEETQYNCKPGYATaegNSSGSITCLQNG-WS-TQPICI 146
Cdd:cd00033    6 VPENGTVTGSKGSYSYGSTVTYSCNEGYTL---VGSSTITCTENGgWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 341-392 8.30e-04

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 37.89  E-value: 8.30e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 320089548   341 EIENGFISESSSIYILNKEIQYKCKPGYATadgNSSGSITCLQNG-WS-AQPIC 392
Cdd:smart00032   6 DIENGTVTSSSGTYSYGDTVTYSCDPGYTL---IGSSTITCLENGtWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 94-145 1.19e-03

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 37.12  E-value: 1.19e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 320089548    94 EIENGFISESSSIYILNEETQYNCKPGYataEGNSSGSITCLQNG-WS-TQPIC 145
Cdd:smart00032   6 DIENGTVTSSSGTYSYGDTVTYSCDPGY---TLIGSSTITCLENGtWSpPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 297-513 1.65e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 40.84  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 297 QSYSYYCDQNFVTPSGSywdyIHCTQDGWLPTVPCLRTCSKSDI--EIENGFISESSSIYIL--NKEIQY-KCKpgyaTA 371
Cdd:PHA02954  42 QKVTFTCDSGYYSLDPN----AVCETDKWKYENPCKKMCTVSDYvsELYDKPLYEVNSTITLicKDETKYfRCE----EK 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 372 DGNSSGSITCLQNGWSAQPICIkfcdmpvfENSRAKSNGMRFKLHDTLDYECYDGYEISygnTTGSIVCGEDGWSHFPTC 451
Cdd:PHA02954 114 NGNTSWNDTVTCPNAECQPLQL--------EHGSCQPVKEKYSFGEHITINCDVGYEVI---GASYISCTANSWNVIPSC 182

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320089548 452 ynsSEKCGPPPpISNGDTTSFLLKVyvpQSRVEYQCQSYYELQGSNYVTCSNGEWSEP-PRCI 513
Cdd:PHA02954 183 ---QQKCDIPS-LSNGLISGSTFSI---GGVIHLSCKSGFTLTGSPSSTCIDGKWNPVlPICV 238
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 325-460 3.11e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 40.07  E-value: 3.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 325 WLPTVPCLRTCSKSdIEIENGFISESSSIYILNKEIQYKCKPGYATAdgnSSGSITCLQNGWSAQPICIKFCDMPVFENS 404
Cdd:PHA02954 119 WNDTVTCPNAECQP-LQLEHGSCQPVKEKYSFGEHITINCDVGYEVI---GASYISCTANSWNVIPSCQQKCDIPSLSNG 194

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548 405 RAksNGMRFKLHDTLDYECYDGYEISygnTTGSIVCGEDGWSH-FPTCYNSSEKCGP 460
Cdd:PHA02954 195 LI--SGSTFSIGGVIHLSCKSGFTLT---GSPSSTCIDGKWNPvLPICVRSNEEFDP 246
PHA02639 PHA02639
EEV host range protein; Provisional
 209-340 4.05e-03

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 39.65  E-value: 4.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 209 ENCGPPPPISNGDTTSfPQKVYLPWSRVEYQCQSY----YELQGSKYVTCS-NGDWSEPPRCISMKPCEFPEIQHGHLY- 282
Cdd:PHA02639  83 KECNDPPSIINGKIYN-KREMYKVGDEIYYVCNEHkgvqYSLVGNEKITCIqDKSWKPDPPICKMINCRFPALQNGYINg 161

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 283 YENTRRPYFPVATGqsysYYCDQNFVTPSGSYWDyihCTQDG-WLPTVP-CLRTCSKSDI 340
Cdd:PHA02639 162 IPSNKKFYYKTRVG----FSCKSGFDLVGEKYST---CNINAtWFPSIPtCVRNKPIDDI 214
PHA02831 PHA02831
EEV host range protein; Provisional
 471-578 5.23e-03

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 39.21  E-value: 5.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 471 SFLLKVYVPQSRVEYQCQSYYElqgSNYVTCSNGEWSEPPRCIHPCIITEENMNKNNiQLKGKSDiKYyaKTGDTIEFMC 550
Cdd:PHA02831  34 SYENKVYEENENLEYKCNNNFD---KVFVTCNNGSWSTKNMCIGKRNCKDPVTILNG-YIKNKKD-QY--SFGDSVTYAC 106

                         90       100       110
                 ....*....|....*....|....*....|.
gi 320089548 551 KLGYNANTSVLSFQAV-CREG--IVEYPRCE 578
Cdd:PHA02831 107 KVNKLEKYSIVGNETVkCINKqwVPKYPVCK 137
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 50-279 6.80e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 38.91  E-value: 6.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548  50 QSYSYYCDQNFVTPSGSywdyIHCTQDGWSPTVPCLRTCSKSDV--EIENGFISESSSIYIL--NEETQY-NCKpgyaTA 124
Cdd:PHA02954  42 QKVTFTCDSGYYSLDPN----AVCETDKWKYENPCKKMCTVSDYvsELYDKPLYEVNSTITLicKDETKYfRCE----EK 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 125 EGNSSGSITCLQNGWSTQPICIKFCD-MPVFENsraksngmwFKLHDTLDYECYDGYE---SSYgnttdsIVCGEDGWSH 200
Cdd:PHA02954 114 NGNTSWNDTVTCPNAECQPLQLEHGScQPVKEK---------YSFGEHITINCDVGYEvigASY------ISCTANSWNV 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 201 LPTCYNSSENCGPPPPISNGDTTSFPQKVYLpwsrveyQCQSYYELQGSKYVTCSNGDWSEP-PRCISMKPcEFPEIQHG 279
Cdd:PHA02954 179 IPSCQQKCDIPSLSNGLISGSTFSIGGVIHL-------SCKSGFTLTGSPSSTCIDGKWNPVlPICVRSNE-EFDPVDDG 250
PHA02817 PHA02817
EEV Host range protein; Provisional
 265-395 7.00e-03

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 38.38  E-value: 7.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320089548 265 CISMKPCEFPEIQHGHLYyeNTRRPYfpvATGQSYSYYCDQNFVTPSGSYW--DYIHCTQDG-WLPTVPCLRTCSKSDIE 341
Cdd:PHA02817  19 CDLNKCCYPPSIKNGYIY--NKKTEY---NIGSNVTFFCGNNTRGVRYTLVgeKNIICEKDGkWNKEFPVCKIIRCRFPA 93

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 320089548 342 IENGFIS--ESSSIYILNKEIQYKCKPGYATAdgNSSGSITCLQNGWSAQ-PICIKF 395
Cdd:PHA02817  94 LQNGFVNgiPDSKKFYYESEVSFSCKPGFVLI--GTKYSVCGINSSWIPKvPICSRD 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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