transmembrane protease serine 13 isoform 3 [Homo sapiens]
LDL receptor domain-containing protein( domain architecture ID 11517102)
Low Density Lipoprotein (LDL) receptor class A domain is a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; similar to Bos taurus CD320 antigen; Low Density Lipoprotein (LDL) receptor class A domain is a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; similar to Bos taurus CD320 antigen; Low Density Lipoprotein (LDL) receptor class A domain is a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; similar to Caenorhabditis elegans LDL receptor repeat-containing protein egg-2
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Tryp_SPc | smart00020 | Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ... |
325-441 | 1.01e-31 | |||
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. : Pssm-ID: 214473 Cd Length: 229 Bit Score: 121.63 E-value: 1.01e-31
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SRCR_2 | pfam15494 | Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ... |
231-321 | 2.07e-29 | |||
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin. : Pssm-ID: 464747 Cd Length: 99 Bit Score: 110.88 E-value: 2.07e-29
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PHA03378 super family | cl33729 | EBNA-3B; Provisional |
9-148 | 2.22e-12 | |||
EBNA-3B; Provisional The actual alignment was detected with superfamily member PHA03378: Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 69.71 E-value: 2.22e-12
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LDLa | cd00112 | Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ... |
210-226 | 4.41e-03 | |||
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure : Pssm-ID: 238060 Cd Length: 35 Bit Score: 34.87 E-value: 4.41e-03
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Name | Accession | Description | Interval | E-value | ||||
Tryp_SPc | smart00020 | Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ... |
325-441 | 1.01e-31 | ||||
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Pssm-ID: 214473 Cd Length: 229 Bit Score: 121.63 E-value: 1.01e-31
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Tryp_SPc | cd00190 | Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ... |
326-427 | 7.20e-30 | ||||
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Pssm-ID: 238113 [Multi-domain] Cd Length: 232 Bit Score: 116.61 E-value: 7.20e-30
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SRCR_2 | pfam15494 | Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ... |
231-321 | 2.07e-29 | ||||
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin. Pssm-ID: 464747 Cd Length: 99 Bit Score: 110.88 E-value: 2.07e-29
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COG5640 | COG5640 | Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ... |
317-425 | 2.55e-26 | ||||
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 444365 [Multi-domain] Cd Length: 262 Bit Score: 107.43 E-value: 2.55e-26
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Trypsin | pfam00089 | Trypsin; |
326-441 | 6.18e-25 | ||||
Trypsin; Pssm-ID: 459667 [Multi-domain] Cd Length: 219 Bit Score: 102.52 E-value: 6.18e-25
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PHA03378 | PHA03378 | EBNA-3B; Provisional |
9-148 | 2.22e-12 | ||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 69.71 E-value: 2.22e-12
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SR | smart00202 | Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ... |
245-316 | 2.17e-06 | ||||
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO. Pssm-ID: 214555 [Multi-domain] Cd Length: 101 Bit Score: 46.18 E-value: 2.17e-06
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DUF5585 | pfam17823 | Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
2-155 | 2.83e-05 | ||||
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 46.49 E-value: 2.83e-05
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rad23 | TIGR00601 | UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
9-70 | 4.31e-04 | ||||
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.57 E-value: 4.31e-04
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SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
6-91 | 2.24e-03 | ||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 40.37 E-value: 2.24e-03
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KREPA2 | cd23959 | Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
6-91 | 2.51e-03 | ||||
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex. Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 40.24 E-value: 2.51e-03
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LDLa | cd00112 | Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ... |
210-226 | 4.41e-03 | ||||
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure Pssm-ID: 238060 Cd Length: 35 Bit Score: 34.87 E-value: 4.41e-03
|
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Name | Accession | Description | Interval | E-value | ||||
Tryp_SPc | smart00020 | Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ... |
325-441 | 1.01e-31 | ||||
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Pssm-ID: 214473 Cd Length: 229 Bit Score: 121.63 E-value: 1.01e-31
|
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Tryp_SPc | cd00190 | Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ... |
326-427 | 7.20e-30 | ||||
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Pssm-ID: 238113 [Multi-domain] Cd Length: 232 Bit Score: 116.61 E-value: 7.20e-30
|
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SRCR_2 | pfam15494 | Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ... |
231-321 | 2.07e-29 | ||||
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin. Pssm-ID: 464747 Cd Length: 99 Bit Score: 110.88 E-value: 2.07e-29
|
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COG5640 | COG5640 | Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ... |
317-425 | 2.55e-26 | ||||
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 444365 [Multi-domain] Cd Length: 262 Bit Score: 107.43 E-value: 2.55e-26
|
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Trypsin | pfam00089 | Trypsin; |
326-441 | 6.18e-25 | ||||
Trypsin; Pssm-ID: 459667 [Multi-domain] Cd Length: 219 Bit Score: 102.52 E-value: 6.18e-25
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PHA03378 | PHA03378 | EBNA-3B; Provisional |
9-148 | 2.22e-12 | ||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 69.71 E-value: 2.22e-12
|
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
15-142 | 3.54e-10 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 62.42 E-value: 3.54e-10
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
7-91 | 7.12e-10 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 61.54 E-value: 7.12e-10
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PHA03378 | PHA03378 | EBNA-3B; Provisional |
8-155 | 7.85e-10 | ||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 61.62 E-value: 7.85e-10
|
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PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
9-155 | 9.28e-10 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 61.02 E-value: 9.28e-10
|
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PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
3-170 | 3.37e-09 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 59.12 E-value: 3.37e-09
|
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PHA03378 | PHA03378 | EBNA-3B; Provisional |
4-150 | 3.79e-09 | ||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 59.31 E-value: 3.79e-09
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
15-155 | 5.37e-09 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 58.84 E-value: 5.37e-09
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
21-151 | 5.51e-09 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 58.57 E-value: 5.51e-09
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
9-130 | 5.51e-09 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 58.57 E-value: 5.51e-09
|
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PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
15-155 | 1.03e-08 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 57.94 E-value: 1.03e-08
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
5-150 | 1.63e-08 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 57.30 E-value: 1.63e-08
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eMpr | COG3591 | V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ... |
346-425 | 2.27e-08 | ||||
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 442810 [Multi-domain] Cd Length: 194 Bit Score: 53.91 E-value: 2.27e-08
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
31-163 | 5.24e-08 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.49 E-value: 5.24e-08
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
9-172 | 6.01e-08 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 6.01e-08
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PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
9-91 | 6.03e-08 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 55.26 E-value: 6.03e-08
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
1-91 | 1.00e-07 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.61 E-value: 1.00e-07
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
4-91 | 1.41e-07 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 53.95 E-value: 1.41e-07
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PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
5-170 | 1.94e-07 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 53.73 E-value: 1.94e-07
|
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PRK14971 | PRK14971 | DNA polymerase III subunit gamma/tau; |
7-91 | 3.44e-07 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 52.86 E-value: 3.44e-07
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
5-150 | 3.58e-07 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.02 E-value: 3.58e-07
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kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
14-87 | 5.32e-07 | ||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.59 E-value: 5.32e-07
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
5-152 | 9.66e-07 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 51.71 E-value: 9.66e-07
|
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PHA03378 | PHA03378 | EBNA-3B; Provisional |
3-87 | 1.08e-06 | ||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 51.61 E-value: 1.08e-06
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
4-152 | 1.31e-06 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.48 E-value: 1.31e-06
|
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
9-155 | 1.62e-06 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.75 E-value: 1.62e-06
|
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
3-140 | 1.89e-06 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.37 E-value: 1.89e-06
|
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
9-150 | 2.11e-06 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.37 E-value: 2.11e-06
|
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SR | smart00202 | Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ... |
245-316 | 2.17e-06 | ||||
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO. Pssm-ID: 214555 [Multi-domain] Cd Length: 101 Bit Score: 46.18 E-value: 2.17e-06
|
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
3-153 | 2.90e-06 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 50.17 E-value: 2.90e-06
|
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
14-153 | 3.94e-06 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 3.94e-06
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
11-168 | 1.07e-05 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 1.07e-05
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
7-155 | 1.07e-05 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 1.07e-05
|
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
9-156 | 1.60e-05 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.86 E-value: 1.60e-05
|
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PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
9-88 | 2.39e-05 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 47.15 E-value: 2.39e-05
|
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DUF5585 | pfam17823 | Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
2-155 | 2.83e-05 | ||||
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 46.49 E-value: 2.83e-05
|
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PRK14959 | PRK14959 | DNA polymerase III subunits gamma and tau; Provisional |
1-91 | 3.57e-05 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 46.21 E-value: 3.57e-05
|
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
6-147 | 3.90e-05 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.52 E-value: 3.90e-05
|
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
9-91 | 9.15e-05 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.98 E-value: 9.15e-05
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
10-167 | 1.00e-04 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.31 E-value: 1.00e-04
|
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
3-91 | 1.10e-04 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.16 E-value: 1.10e-04
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
9-91 | 1.95e-04 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.95e-04
|
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PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
9-146 | 2.10e-04 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 2.10e-04
|
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
7-149 | 2.27e-04 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.01 E-value: 2.27e-04
|
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motB | PRK05996 | MotB family protein; |
1-90 | 2.33e-04 | ||||
MotB family protein; Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 43.53 E-value: 2.33e-04
|
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kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
8-77 | 2.59e-04 | ||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.73 E-value: 2.59e-04
|
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PRK14950 | PRK14950 | DNA polymerase III subunits gamma and tau; Provisional |
9-87 | 2.70e-04 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.64 E-value: 2.70e-04
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
12-153 | 3.10e-04 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 3.10e-04
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
9-155 | 3.77e-04 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 3.77e-04
|
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PRK14950 | PRK14950 | DNA polymerase III subunits gamma and tau; Provisional |
14-86 | 4.05e-04 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.87 E-value: 4.05e-04
|
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rad23 | TIGR00601 | UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
9-70 | 4.31e-04 | ||||
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.57 E-value: 4.31e-04
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PHA02682 | PHA02682 | ORF080 virion core protein; Provisional |
8-91 | 5.18e-04 | ||||
ORF080 virion core protein; Provisional Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 41.77 E-value: 5.18e-04
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PHA03377 | PHA03377 | EBNA-3C; Provisional |
19-150 | 5.40e-04 | ||||
EBNA-3C; Provisional Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 42.73 E-value: 5.40e-04
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PRK14965 | PRK14965 | DNA polymerase III subunits gamma and tau; Provisional |
10-91 | 5.66e-04 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 42.42 E-value: 5.66e-04
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PRK10856 | PRK10856 | cytoskeleton protein RodZ; |
4-91 | 5.69e-04 | ||||
cytoskeleton protein RodZ; Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 41.94 E-value: 5.69e-04
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
3-86 | 6.46e-04 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.62 E-value: 6.46e-04
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
4-156 | 7.15e-04 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.62 E-value: 7.15e-04
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flhF | PRK06995 | flagellar biosynthesis protein FlhF; |
11-91 | 7.26e-04 | ||||
flagellar biosynthesis protein FlhF; Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 41.88 E-value: 7.26e-04
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PRK14965 | PRK14965 | DNA polymerase III subunits gamma and tau; Provisional |
1-72 | 7.53e-04 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 42.04 E-value: 7.53e-04
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Treacle | pfam03546 | Treacher Collins syndrome protein Treacle; |
16-90 | 7.87e-04 | ||||
Treacher Collins syndrome protein Treacle; Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 41.98 E-value: 7.87e-04
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PHA03377 | PHA03377 | EBNA-3C; Provisional |
3-86 | 8.16e-04 | ||||
EBNA-3C; Provisional Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 41.96 E-value: 8.16e-04
|
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PRK12373 | PRK12373 | NADH-quinone oxidoreductase subunit E; |
14-87 | 9.85e-04 | ||||
NADH-quinone oxidoreductase subunit E; Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 41.33 E-value: 9.85e-04
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Treacle | pfam03546 | Treacher Collins syndrome protein Treacle; |
1-90 | 1.10e-03 | ||||
Treacher Collins syndrome protein Treacle; Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 41.60 E-value: 1.10e-03
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
8-152 | 1.12e-03 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 1.12e-03
|
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PRK14959 | PRK14959 | DNA polymerase III subunits gamma and tau; Provisional |
3-90 | 1.16e-03 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 41.59 E-value: 1.16e-03
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PHA03378 | PHA03378 | EBNA-3B; Provisional |
3-83 | 1.17e-03 | ||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.59 E-value: 1.17e-03
|
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flhF | PRK06995 | flagellar biosynthesis protein FlhF; |
9-91 | 1.23e-03 | ||||
flagellar biosynthesis protein FlhF; Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 41.11 E-value: 1.23e-03
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PHA03381 | PHA03381 | tegument protein VP22; Provisional |
10-91 | 1.70e-03 | ||||
tegument protein VP22; Provisional Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 40.38 E-value: 1.70e-03
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SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
6-91 | 2.24e-03 | ||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 40.37 E-value: 2.24e-03
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PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
21-150 | 2.36e-03 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 2.36e-03
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
3-161 | 2.38e-03 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.54 E-value: 2.38e-03
|
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PTZ00436 | PTZ00436 | 60S ribosomal protein L19-like protein; Provisional |
3-144 | 2.42e-03 | ||||
60S ribosomal protein L19-like protein; Provisional Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 40.32 E-value: 2.42e-03
|
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rad23 | TIGR00601 | UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
21-90 | 2.44e-03 | ||||
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.26 E-value: 2.44e-03
|
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KREPA2 | cd23959 | Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
6-91 | 2.51e-03 | ||||
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex. Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 40.24 E-value: 2.51e-03
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PTZ00436 | PTZ00436 | 60S ribosomal protein L19-like protein; Provisional |
9-155 | 2.78e-03 | ||||
60S ribosomal protein L19-like protein; Provisional Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 39.93 E-value: 2.78e-03
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PRK12495 | PRK12495 | hypothetical protein; Provisional |
4-90 | 2.79e-03 | ||||
hypothetical protein; Provisional Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 39.47 E-value: 2.79e-03
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PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
4-155 | 2.97e-03 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.22 E-value: 2.97e-03
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Treacle | pfam03546 | Treacher Collins syndrome protein Treacle; |
36-91 | 3.01e-03 | ||||
Treacher Collins syndrome protein Treacle; Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 40.06 E-value: 3.01e-03
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PTZ00436 | PTZ00436 | 60S ribosomal protein L19-like protein; Provisional |
12-155 | 3.26e-03 | ||||
60S ribosomal protein L19-like protein; Provisional Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 39.55 E-value: 3.26e-03
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KREPA2 | cd23959 | Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
20-90 | 3.41e-03 | ||||
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex. Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 39.85 E-value: 3.41e-03
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PRK14959 | PRK14959 | DNA polymerase III subunits gamma and tau; Provisional |
23-143 | 3.57e-03 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 40.05 E-value: 3.57e-03
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PHA03377 | PHA03377 | EBNA-3C; Provisional |
9-91 | 3.57e-03 | ||||
EBNA-3C; Provisional Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 40.04 E-value: 3.57e-03
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
9-155 | 3.74e-03 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.15 E-value: 3.74e-03
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
2-91 | 3.77e-03 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.15 E-value: 3.77e-03
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PHA03270 | PHA03270 | envelope glycoprotein C; Provisional |
9-67 | 3.78e-03 | ||||
envelope glycoprotein C; Provisional Pssm-ID: 165528 [Multi-domain] Cd Length: 466 Bit Score: 39.53 E-value: 3.78e-03
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PRK06975 | PRK06975 | bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
17-77 | 3.84e-03 | ||||
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 39.70 E-value: 3.84e-03
|
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PHA03381 | PHA03381 | tegument protein VP22; Provisional |
2-90 | 3.91e-03 | ||||
tegument protein VP22; Provisional Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 39.22 E-value: 3.91e-03
|
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PDHac_trf_long | TIGR01348 | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ... |
25-87 | 4.40e-03 | ||||
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase] Pssm-ID: 273566 [Multi-domain] Cd Length: 546 Bit Score: 39.47 E-value: 4.40e-03
|
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LDLa | cd00112 | Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ... |
210-226 | 4.41e-03 | ||||
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure Pssm-ID: 238060 Cd Length: 35 Bit Score: 34.87 E-value: 4.41e-03
|
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PLN02217 | PLN02217 | probable pectinesterase/pectinesterase inhibitor |
7-91 | 4.48e-03 | ||||
probable pectinesterase/pectinesterase inhibitor Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 39.69 E-value: 4.48e-03
|
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Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
2-91 | 6.17e-03 | ||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 39.37 E-value: 6.17e-03
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PHA03201 | PHA03201 | uracil DNA glycosylase; Provisional |
1-91 | 6.41e-03 | ||||
uracil DNA glycosylase; Provisional Pssm-ID: 165468 Cd Length: 318 Bit Score: 38.72 E-value: 6.41e-03
|
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aceF | PRK11854 | pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated |
17-71 | 7.08e-03 | ||||
pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Pssm-ID: 236999 [Multi-domain] Cd Length: 633 Bit Score: 38.83 E-value: 7.08e-03
|
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PRK10856 | PRK10856 | cytoskeleton protein RodZ; |
6-91 | 7.19e-03 | ||||
cytoskeleton protein RodZ; Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 38.47 E-value: 7.19e-03
|
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PRK14954 | PRK14954 | DNA polymerase III subunits gamma and tau; Provisional |
23-90 | 7.40e-03 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 38.77 E-value: 7.40e-03
|
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
16-85 | 8.36e-03 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.15 E-value: 8.36e-03
|
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PRK12373 | PRK12373 | NADH-quinone oxidoreductase subunit E; |
8-91 | 8.58e-03 | ||||
NADH-quinone oxidoreductase subunit E; Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 38.63 E-value: 8.58e-03
|
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
1-155 | 9.12e-03 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 39.00 E-value: 9.12e-03
|
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PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
1-156 | 9.12e-03 | ||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 39.00 E-value: 9.12e-03
|
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Blast search parameters | ||||
|