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Conserved domains on  [gi|392891060|ref|NP_001254187|]
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Suppressor of zyg-1 protein 20 [Caenorhabditis elegans]

Protein Classification

SUZ domain-containing protein( domain architecture ID 10579281)

SUZ domain-containing protein similar to Caenorhabditis elegans suppressor of zyg-1 protein 20, an RNA binding protein that is required for normal cell division and cytokinesis during embryonic development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
 69-145 2.22e-08

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


:

Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 50.40  E-value: 2.22e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392891060   69 EEPKRVFLRRPKDGFAASENVIEASPPTSADTEEQpvtnvrsrshhklnqkekqpapTYEERQAAYQAARNRILGTE 145
Cdd:pfam12752   1 PPPKMKILRRPSSGSSSSSSAGSSGASSSSGSDSK----------------------TLEEREAEYAEARARIFGSS 55
 
Name Accession Description Interval E-value
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
 69-145 2.22e-08

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 50.40  E-value: 2.22e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392891060   69 EEPKRVFLRRPKDGFAASENVIEASPPTSADTEEQpvtnvrsrshhklnqkekqpapTYEERQAAYQAARNRILGTE 145
Cdd:pfam12752   1 PPPKMKILRRPSSGSSSSSSAGSSGASSSSGSDSK----------------------TLEEREAEYAEARARIFGSS 55
 
Name Accession Description Interval E-value
SUZ pfam12752
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ...
 69-145 2.22e-08

SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.


Pssm-ID: 463689 [Multi-domain]  Cd Length: 56  Bit Score: 50.40  E-value: 2.22e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392891060   69 EEPKRVFLRRPKDGFAASENVIEASPPTSADTEEQpvtnvrsrshhklnqkekqpapTYEERQAAYQAARNRILGTE 145
Cdd:pfam12752   1 PPPKMKILRRPSSGSSSSSSAGSSGASSSSGSDSK----------------------TLEEREAEYAEARARIFGSS 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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