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Conserved domains on  [gi|392892040|ref|NP_001254340|]
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Polycomb protein sop-2 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 366-621 6.57e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 6.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  366 PESRRRPAAPLPETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGGGNRRGSRRGQKR-- 443
Cdd:PHA03247 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRra 2687

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  444 ---TSGGSGKLVEP-KKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRkirami 519
Cdd:PHA03247 2688 arpTVGSLTSLADPpPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP------ 2761

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  520 fslTGSPPESETPPvlqqeqvistAAPTAGRHPniiqqvphinRIPPQPLRRLTA--PQAPPASQPEEPPVQQTVPVVKV 597
Cdd:PHA03247 2762 ---TTAGPPAPAPP----------AAPAAGPPR----------RLTRPAVASLSEsrESLPSPWDPADPPAAVLAPAAAL 2818

                         250       260
                  ....*....|....*....|....
gi 392892040  598 ELASAPAPIVRDPQSTEPVPPAMP 621
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPP 2842
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 366-621 6.57e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 6.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  366 PESRRRPAAPLPETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGGGNRRGSRRGQKR-- 443
Cdd:PHA03247 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRra 2687

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  444 ---TSGGSGKLVEP-KKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRkirami 519
Cdd:PHA03247 2688 arpTVGSLTSLADPpPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP------ 2761

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  520 fslTGSPPESETPPvlqqeqvistAAPTAGRHPniiqqvphinRIPPQPLRRLTA--PQAPPASQPEEPPVQQTVPVVKV 597
Cdd:PHA03247 2762 ---TTAGPPAPAPP----------AAPAAGPPR----------RLTRPAVASLSEsrESLPSPWDPADPPAAVLAPAAAL 2818

                         250       260
                  ....*....|....*....|....
gi 392892040  598 ELASAPAPIVRDPQSTEPVPPAMP 621
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPP 2842
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 366-621 6.57e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 6.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  366 PESRRRPAAPLPETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGGGNRRGSRRGQKR-- 443
Cdd:PHA03247 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRra 2687

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  444 ---TSGGSGKLVEP-KKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRkirami 519
Cdd:PHA03247 2688 arpTVGSLTSLADPpPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP------ 2761

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  520 fslTGSPPESETPPvlqqeqvistAAPTAGRHPniiqqvphinRIPPQPLRRLTA--PQAPPASQPEEPPVQQTVPVVKV 597
Cdd:PHA03247 2762 ---TTAGPPAPAPP----------AAPAAGPPR----------RLTRPAVASLSEsrESLPSPWDPADPPAAVLAPAAAL 2818

                         250       260
                  ....*....|....*....|....
gi 392892040  598 ELASAPAPIVRDPQSTEPVPPAMP 621
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPP 2842
PRK11633 PRK11633
cell division protein DedD; Provisional
 498-617 1.58e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 49.62  E-value: 1.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 498 ATPATPASSDsRDSPRKIRAMIFSLTGSPPESETppvlqqEQVISTAAPTAGRHPNIIQQvphinriPPQPLRRLTAPQA 577
Cdd:PRK11633  40 AIPLVPKPGD-RDEPDMMPAATQALPTQPPEGAA------EAVRAGDAAAPSLDPATVAP-------PNTPVEPEPAPVE 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 392892040 578 PPASQPEEPPVQQTVPVVKVELASAPAPIVRDPQSTEPVP 617
Cdd:PRK11633 106 PPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
PHA03247 PHA03247
large tegument protein UL36; Provisional
 366-622 5.04e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 5.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  366 PESRRRP---AAPLPETPAAqPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGggnrrgsrrgqk 442
Cdd:PHA03247 2708 PEPAPHAlvsATPLPPGPAA-ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA------------ 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  443 RTSGGSGKLVEPKKEPVDEPAEKIPkrseaAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIramifsl 522
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRESLP-----SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP------- 2842

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  523 TGSPPESETP--------PVLQQEQVISTAA-PTAGRHPniiqqvpHINRIPPQPLRRLTAPQAPPASQPEEP--PVQQT 591
Cdd:PHA03247 2843 PGPPPPSLPLggsvapggDVRRRPPSRSPAAkPAAPARP-------PVRRLARPAVSRSTESFALPPDQPERPpqPQAPP 2915

                         250       260       270
                  ....*....|....*....|....*....|.
gi 392892040  592 VPVVKVELASAPAPIVRDPQSTEPVPPAMPT 622
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 531-632 2.81e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.50  E-value: 2.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 531 TPPVLQQEQVISTAAPTAGRHPNIIQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKvELASAPAPIVRDP 610
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAP-KLTRAAIPVDEKP 442

                         90       100
                 ....*....|....*....|..
gi 392892040 611 QSTEPVPPAMPTLVENNHEATL 632
Cdd:PRK14950 443 KYTPPAPPKEEEKALIADGDVL 464
PHA03247 PHA03247
large tegument protein UL36; Provisional
 454-622 7.77e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 7.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  454 PKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTS-SSPPDAPATPATPASSDSRDSPRKIRAMIFSLTGSPPESETP 532
Cdd:PHA03247 2569 PPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRgDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  533 PvlqqEQVISTAAPTAGRHPNII--QQVPHINRIPPQPLRRLTAPQA----------PPASQPEEPPVQQTVPVVKVELA 600
Cdd:PHA03247 2649 P----ERPRDDPAPGRVSRPRRArrLGRAAQASSPPQRPRRRAARPTvgsltsladpPPPPPTPEPAPHALVSATPLPPG 2724

                         170       180
                  ....*....|....*....|..
gi 392892040  601 SAPAPIVRDPQSTEPVPPAMPT 622
Cdd:PHA03247 2725 PAAARQASPALPAAPAPPAVPA 2746
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
469-621 4.94e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 4.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 469 RSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKiramifslTGSPPESETPPVLQQEQVISTAAPTA 548
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA--------AAPARRSPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392892040 549 GRHPniiqqvphinriPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKVELASAPAPIVRDPQSTEPVPPAMP 621
Cdd:PRK12323 447 APAP------------APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA 507
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 223-625 1.49e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 223 AARSSRMAARRGGRPGYRGAFRGAARGAPSRRPAPAAEVAPETPVAAPMAPAAPAAPATPEAAPAAEVMDTSIATEMPQE 302
Cdd:PRK07764 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 303 SAVDLSNVSAATEMDTSKEGEASRPTSekkkfqkirttemdrlmsmdlGPKDGGRVGELGHMWPE--------SRRRPAA 374
Cdd:PRK07764 475 EPTAAPAPAPPAAPAPAAAPAAPAAPA---------------------APAGADDAATLRERWPEilaavpkrSRKTWAI 533

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 375 PLPETPAAQPRKS----------LPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNArggrgggnrrgsrrgqkrt 444
Cdd:PRK07764 534 LLPEATVLGVRGDtlvlgfstggLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGA------------------- 594

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 445 SGGSGKLVEPKKEPVDEPAEKIPKRSEAAPEVPATATT-KEAPPSTSSSPPDAPATPATPASSDSRDSPRKIRAMIFSLT 523
Cdd:PRK07764 595 AGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAaAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 524 GSPPESETPPVLQQEQVISTAAP-----TAGRHPNIIQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKVE 598
Cdd:PRK07764 675 GAAPAAPPPAPAPAAPAAPAGAApaqpaPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA 754

                        410       420
                 ....*....|....*....|....*..
gi 392892040 599 LASAPAPIVRDPQSTEPVPPAMPTLVE 625
Cdd:PRK07764 755 PAQPPPPPAPAPAAAPAAAPPPSPPSE 781
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 516-649 4.42e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.23  E-value: 4.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 516 RAMIFSLTGSPPESETPPVlqqeqvISTAAPTAGRHPNIIQQVPhinriPPQPLRRLTAPQAPPASQPEEPPVQQTVPVV 595
Cdd:PRK07994 355 RMLAFHPAAPLPEPEVPPQ------SAAPAASAQATAAPTAAVA-----PPQAPAVPPPPASAPQQAPAVPLPETTSQLL 423

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392892040 596 K-----VELASAPAPIVRDP---QSTEPVPPAMPTLVENNHEATLILPPNKTSDYTRWNAQD 649
Cdd:PRK07994 424 AarqqlQRAQGATKAKKSEPaaaSRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATN 485
rne PRK10811
ribonuclease E; Reviewed
 452-615 5.90e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 40.02  E-value: 5.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  452 VEPKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIRAMIfsltgSPPESET 531
Cdd:PRK10811  853 VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI-----AAPVTEQ 927

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040  532 PPVLQQ------EQVISTAAPTAGRHPNI--IQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKVELASAP 603
Cdd:PRK10811  928 PQVITEsdvavaQEVAEHAEPVVEPQDETadIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007

                         170
                  ....*....|..
gi 392892040  604 APIVRDPQSTEP 615
Cdd:PRK10811 1008 EATVEHNHATAP 1019
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
372-622 6.99e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 6.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 372 PAAPLPETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVemevdndASTSTPRNARGGRGGGNRRGSRRGQKRTSGGSGKL 451
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA-------AAAARAVAAAPARRSPAPEALAAARQASARGPGGA 447

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 452 VEPKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPstsssppdAPATPATPASSDSrdsprkiramifsltgsPPESET 531
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA--------APAAAPAPADDDP-----------------PPWEEL 502

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 532 PPVLQQEQVISTAAPTAGRHPNIIQqvphinrippqplRRLTAPQAPPASQPEEPPVQQTVPVVKVELASAPAPivRDPQ 611
Cdd:PRK12323 503 PPEFASPAPAQPDAAPAGWVAESIP-------------DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP--RPPR 567

                        250
                 ....*....|.
gi 392892040 612 STEPVPPAMPT 622
Cdd:PRK12323 568 ASASGLPDMFD 578
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
366-621 7.86e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.83  E-value: 7.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 366 PESRRRPAAPLPETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDN--DASTSTPRNARGGRGGGNRRGSRRGQKR 443
Cdd:PRK07003 412 PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSrcDERDAQPPADSGSASAPASDAPPDAAFE 491

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 444 TSGGSGKLVEPKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIRAMIFSLT 523
Cdd:PRK07003 492 PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARA 571

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892040 524 GSPPESETPPvlqqeqviSTAAPTAGRHPNIIQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQT------------ 591
Cdd:PRK07003 572 AAAAKPAAAP--------AAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDippddyvplsad 643

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 392892040 592 ----------VPVV-----KVELASAPAPIVRDPQSTEPVPPAMP 621
Cdd:PRK07003 644 egfggpddgfVPVFdsgpdDVRVAPKPADAPAPPVDTRPLPPAIP 688
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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