NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|392892042|ref|NP_001254341|]
View 

Polycomb protein sop-2 [Caenorhabditis elegans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK11633 super family cl25866
cell division protein DedD; Provisional
 496-615 1.70e-06

cell division protein DedD; Provisional


The actual alignment was detected with superfamily member PRK11633:

Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 49.62  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 496 ATPATPASSDsRDSPRKIRAMIFSLTGSPPESETppvlqqEQVISTAAPTAGRHPNIIQQvphinriPPQPLRRLTAPQA 575
Cdd:PRK11633  40 AIPLVPKPGD-RDEPDMMPAATQALPTQPPEGAA------EAVRAGDAAAPSLDPATVAP-------PNTPVEPEPAPVE 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 392892042 576 PPASQPEEPPVQQTVPVVKVELASAPAPIVRDPQSTEPVP 615
Cdd:PRK11633 106 PPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 364-620 5.75e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 5.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  364 PESRRRP---AAPLPETPAAqPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGggnrrgsrrgqk 440
Cdd:PHA03247 2708 PEPAPHAlvsATPLPPGPAA-ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA------------ 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  441 RTSGGSGKLVEPKKEPVDEPAEKIPkrseaAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIramifsl 520
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRESLP-----SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP------- 2842

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  521 TGSPPESETP--------PVLQQEQVISTAA-PTAGRHPniiqqvpHINRIPPQPLRRLTAPQAPPASQPEEP--PVQQT 589
Cdd:PHA03247 2843 PGPPPPSLPLggsvapggDVRRRPPSRSPAAkPAAPARP-------PVRRLARPAVSRSTESFALPPDQPERPpqPQAPP 2915

                         250       260       270
                  ....*....|....*....|....*....|.
gi 392892042  590 VPVVKVELASAPAPIVRDPQSTEPVPPAMPT 620
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946
 
Name Accession Description Interval E-value
PRK11633 PRK11633
cell division protein DedD; Provisional
 496-615 1.70e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 49.62  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 496 ATPATPASSDsRDSPRKIRAMIFSLTGSPPESETppvlqqEQVISTAAPTAGRHPNIIQQvphinriPPQPLRRLTAPQA 575
Cdd:PRK11633  40 AIPLVPKPGD-RDEPDMMPAATQALPTQPPEGAA------EAVRAGDAAAPSLDPATVAP-------PNTPVEPEPAPVE 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 392892042 576 PPASQPEEPPVQQTVPVVKVELASAPAPIVRDPQSTEPVP 615
Cdd:PRK11633 106 PPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
PHA03247 PHA03247
large tegument protein UL36; Provisional
 364-620 5.75e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 5.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  364 PESRRRP---AAPLPETPAAqPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGggnrrgsrrgqk 440
Cdd:PHA03247 2708 PEPAPHAlvsATPLPPGPAA-ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA------------ 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  441 RTSGGSGKLVEPKKEPVDEPAEKIPkrseaAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIramifsl 520
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRESLP-----SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP------- 2842

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  521 TGSPPESETP--------PVLQQEQVISTAA-PTAGRHPniiqqvpHINRIPPQPLRRLTAPQAPPASQPEEP--PVQQT 589
Cdd:PHA03247 2843 PGPPPPSLPLggsvapggDVRRRPPSRSPAAkPAAPARP-------PVRRLARPAVSRSTESFALPPDQPERPpqPQAPP 2915

                         250       260       270
                  ....*....|....*....|....*....|.
gi 392892042  590 VPVVKVELASAPAPIVRDPQSTEPVPPAMPT 620
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946
 
Name Accession Description Interval E-value
PRK11633 PRK11633
cell division protein DedD; Provisional
 496-615 1.70e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 49.62  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 496 ATPATPASSDsRDSPRKIRAMIFSLTGSPPESETppvlqqEQVISTAAPTAGRHPNIIQQvphinriPPQPLRRLTAPQA 575
Cdd:PRK11633  40 AIPLVPKPGD-RDEPDMMPAATQALPTQPPEGAA------EAVRAGDAAAPSLDPATVAP-------PNTPVEPEPAPVE 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 392892042 576 PPASQPEEPPVQQTVPVVKVELASAPAPIVRDPQSTEPVP 615
Cdd:PRK11633 106 PPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
PHA03247 PHA03247
large tegument protein UL36; Provisional
 364-620 5.75e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 5.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  364 PESRRRP---AAPLPETPAAqPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGggnrrgsrrgqk 440
Cdd:PHA03247 2708 PEPAPHAlvsATPLPPGPAA-ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA------------ 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  441 RTSGGSGKLVEPKKEPVDEPAEKIPkrseaAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIramifsl 520
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRESLP-----SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP------- 2842

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  521 TGSPPESETP--------PVLQQEQVISTAA-PTAGRHPniiqqvpHINRIPPQPLRRLTAPQAPPASQPEEP--PVQQT 589
Cdd:PHA03247 2843 PGPPPPSLPLggsvapggDVRRRPPSRSPAAkPAAPARP-------PVRRLARPAVSRSTESFALPPDQPERPpqPQAPP 2915

                         250       260       270
                  ....*....|....*....|....*....|.
gi 392892042  590 VPVVKVELASAPAPIVRDPQSTEPVPPAMPT 620
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 529-630 2.92e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.50  E-value: 2.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 529 TPPVLQQEQVISTAAPTAGRHPNIIQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKvELASAPAPIVRDP 608
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAP-KLTRAAIPVDEKP 442

                         90       100
                 ....*....|....*....|..
gi 392892042 609 QSTEPVPPAMPTLVENNHEATL 630
Cdd:PRK14950 443 KYTPPAPPKEEEKALIADGDVL 464
PHA03247 PHA03247
large tegument protein UL36; Provisional
 452-620 8.29e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 8.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  452 PKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTS-SSPPDAPATPATPASSDSRDSPRKIRAMIFSLTGSPPESETP 530
Cdd:PHA03247 2569 PPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRgDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  531 PvlqqEQVISTAAPTAGRHPNII--QQVPHINRIPPQPLRRLTAPQA----------PPASQPEEPPVQQTVPVVKVELA 598
Cdd:PHA03247 2649 P----ERPRDDPAPGRVSRPRRArrLGRAAQASSPPQRPRRRAARPTvgsltsladpPPPPPTPEPAPHALVSATPLPPG 2724

                         170       180
                  ....*....|....*....|..
gi 392892042  599 SAPAPIVRDPQSTEPVPPAMPT 620
Cdd:PHA03247 2725 PAAARQASPALPAAPAPPAVPA 2746
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
467-619 4.96e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 4.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 467 RSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKiramifslTGSPPESETPPVLQQEQVISTAAPTA 546
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA--------AAPARRSPAPEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392892042 547 GRHPniiqqvphinriPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKVELASAPAPIVRDPQSTEPVPPAMP 619
Cdd:PRK12323 447 APAP------------APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA 507
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 223-623 8.90e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 8.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 223 AARSSRMAARRGGRPGYRGAFRGAARGAPSRRPAPAAEVAPETPVAAPMAPAAPAAPATPEAAPAAEVMDTSIATEMPQE 302
Cdd:PRK07764 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 303 SAVDLSNVSAATEMDTSKEGEASRPTSekkkkirttemdrlmsmdlGPKDGGRVGELGHMWPE--------SRRRPAAPL 374
Cdd:PRK07764 475 EPTAAPAPAPPAAPAPAAAPAAPAAPA-------------------APAGADDAATLRERWPEilaavpkrSRKTWAILL 535

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 375 PETPAAQPRKS----------LPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNArggrgggnrrgsrrgqkrtSG 444
Cdd:PRK07764 536 PEATVLGVRGDtlvlgfstggLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGA-------------------AG 596

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 445 GSGKLVEPKKEPVDEPAEKIPKRSEAAPEVPATATT-KEAPPSTSSSPPDAPATPATPASSDSRDSPRKIRAMIFSLTGS 523
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAaAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 524 PPESETPPVLQQEQVISTAAP-----TAGRHPNIIQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKVELA 598
Cdd:PRK07764 677 APAAPPPAPAPAAPAAPAGAApaqpaPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPA 756

                        410       420
                 ....*....|....*....|....*
gi 392892042 599 SAPAPIVRDPQSTEPVPPAMPTLVE 623
Cdd:PRK07764 757 QPPPPPAPAPAAAPAAAPPPSPPSE 781
PHA03247 PHA03247
large tegument protein UL36; Provisional
 282-619 1.75e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  282 PEAAPAAEVmDTSIATEMPQESAVdlsnvsaatemdTSKEGEASRPTSEKKKKIrttemdrlmsmdlgPKDGgrvgelgh 361
Cdd:PHA03247 2560 PPAAPDRSV-PPPRPAPRPSEPAV------------TSRARRPDAPPQSARPRA--------------PVDD-------- 2604

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  362 mwPESRRRPAAPLPETPAAQ-PRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGGGNRRGSRRGQK 440
Cdd:PHA03247 2605 --RGDPRGPAPPSPLPPDTHaPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR 2682

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  441 RTSGGSGKLVEPKKEPVDEPAEKIPKRSEAAPEVPATATTKeAPPSTSSSPPDAPATPATPASSDSRDSPRKIRAMIFSL 520
Cdd:PHA03247 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPP-GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP 2761

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  521 TGSPPESETPPvlqqeqvistAAPTAGRHPniiqqvphinRIPPQPLRRLTA--PQAPPASQPEEPPVQQTVPVVKVELA 598
Cdd:PHA03247 2762 TTAGPPAPAPP----------AAPAAGPPR----------RLTRPAVASLSEsrESLPSPWDPADPPAAVLAPAAALPPA 2821

                         330       340
                  ....*....|....*....|.
gi 392892042  599 SAPAPIVRDPQSTEPVPPAMP 619
Cdd:PHA03247 2822 ASPAGPLPPPTSAQPTAPPPP 2842
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 514-647 4.48e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.23  E-value: 4.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 514 RAMIFSLTGSPPESETPPVlqqeqvISTAAPTAGRHPNIIQQVPhinriPPQPLRRLTAPQAPPASQPEEPPVQQTVPVV 593
Cdd:PRK07994 355 RMLAFHPAAPLPEPEVPPQ------SAAPAASAQATAAPTAAVA-----PPQAPAVPPPPASAPQQAPAVPLPETTSQLL 423

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392892042 594 K-----VELASAPAPIVRDP---QSTEPVPPAMPTLVENNHEATLILPPNKTSDYTRWNAQD 647
Cdd:PRK07994 424 AarqqlQRAQGATKAKKSEPaaaSRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATN 485
rne PRK10811
ribonuclease E; Reviewed
 450-613 6.03e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 40.02  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  450 VEPKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIRAMIfsltgSPPESET 529
Cdd:PRK10811  853 VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI-----AAPVTEQ 927

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042  530 PPVLQQ------EQVISTAAPTAGRHPNI--IQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQTVPVVKVELASAP 601
Cdd:PRK10811  928 PQVITEsdvavaQEVAEHAEPVVEPQDETadIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007

                         170
                  ....*....|..
gi 392892042  602 APIVRDPQSTEP 613
Cdd:PRK10811 1008 EATVEHNHATAP 1019
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
370-620 7.65e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.47  E-value: 7.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 370 PAAPLPETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVemevdndASTSTPRNARGGRGGGNRRGSRRGQKRTSGGSGKL 449
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA-------AAAARAVAAAPARRSPAPEALAAARQASARGPGGA 447

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 450 VEPKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPstsssppdAPATPATPASSDSrdsprkiramifsltgsPPESET 529
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA--------APAAAPAPADDDP-----------------PPWEEL 502

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 530 PPVLQQEQVISTAAPTAGRHPNIIQqvphinrippqplRRLTAPQAPPASQPEEPPVQQTVPVVKVELASAPAPivRDPQ 609
Cdd:PRK12323 503 PPEFASPAPAQPDAAPAGWVAESIP-------------DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP--RPPR 567

                        250
                 ....*....|.
gi 392892042 610 STEPVPPAMPT 620
Cdd:PRK12323 568 ASASGLPDMFD 578
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
364-619 7.90e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.83  E-value: 7.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 364 PESRRRPAAPLPETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDN--DASTSTPRNARGGRGGGNRRGSRRGQKR 441
Cdd:PRK07003 412 PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSrcDERDAQPPADSGSASAPASDAPPDAAFE 491

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 442 TSGGSGKLVEPKKEPVDEPAEKIPKRSEAAPEVPATATTKEAPPSTSSSPPDAPATPATPASSDSRDSPRKIRAMIFSLT 521
Cdd:PRK07003 492 PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARA 571

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392892042 522 GSPPESETPPvlqqeqviSTAAPTAGRHPNIIQQVPHINRIPPQPLRRLTAPQAPPASQPEEPPVQQT------------ 589
Cdd:PRK07003 572 AAAAKPAAAP--------AAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDippddyvplsad 643

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 392892042 590 ----------VPVV-----KVELASAPAPIVRDPQSTEPVPPAMP 619
Cdd:PRK07003 644 egfggpddgfVPVFdsgpdDVRVAPKPADAPAPPVDTRPLPPAIP 688
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH