|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
37-356 |
9.74e-114 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 338.56 E-value: 9.74e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 37 MSLDIQCEQLSDARWTELLPLIQQYQVVRLDDCGLTEVRCKDIRSAIQANPALTELSLRTNELG--DAGVGLVLQGLQNp 114
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGriPRGLQSLLQGLTK- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 115 TCKIQKLSLQNCSLTEAGCGVLPDVLRSlSTLRELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLA 194
Cdd:cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 195 SVLRVKPDFKELVLSNNDFHEAGIHTLCQGLKDSaCQLESLKLENCGITSANCKDLCDVVASKASLQELDLGSNKLGNTG 274
Cdd:cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 275 IAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNELKDEGAQLLCESLLEPGCQLESLWVKTC 354
Cdd:cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317
|
..
gi 398303848 355 SL 356
Cdd:cd00116 318 SF 319
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
259-454 |
2.91e-25 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 107.95 E-value: 2.91e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 259 SLQELDLGSNKLGNTGIAALCSGLLLPScRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNELKDEGAQLLCES 338
Cdd:COG5238 181 SVETVYLGCNQIGDEGIEELAEALTQNT-TVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 339 LlEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGDSGVVELCKALGYPDTvLRVLWLGDCDVTDSGC 418
Cdd:COG5238 260 L-KNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKT-LHTLNLAYNGIGAQGA 337
|
170 180 190
....*....|....*....|....*....|....*.
gi 398303848 419 SSLATVLLANRSLRELDLSNNCMGDTGVLQLLESLK 454
Cdd:COG5238 338 IALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLE 373
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
313-455 |
1.55e-18 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 87.92 E-value: 1.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 313 AKQSLKELSLAGNELKDEGAQLLCESLlEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGDSGVVEL 392
Cdd:COG5238 178 QNNSVETVYLGCNQIGDEGIEELAEAL-TQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIAL 256
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 398303848 393 CKALGYPDTVLRvLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDTGVLQLLESLKQ 455
Cdd:COG5238 257 AEALKNNTTVET-LYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQG 318
|
|
| LRR_RI_capping |
pfam18779 |
Capping Ribonuclease inhibitor Leucine Rich Repeat; Leucine-rich repeats are composed of a ... |
37-66 |
2.16e-10 |
|
Capping Ribonuclease inhibitor Leucine Rich Repeat; Leucine-rich repeats are composed of a beta-alpha unit. This repeat unit is found as capping unit (N- or C- terminal of the repeat region) of Ribonuclease Inhibitors.
Pssm-ID: 436731 Cd Length: 30 Bit Score: 55.58 E-value: 2.16e-10
10 20 30
....*....|....*....|....*....|
gi 398303848 37 MSLDIQCEQLSDARWTELLPLIQQYQVVRL 66
Cdd:pfam18779 1 MDLDIQCEELSDSRWAELLPSMQQCKVVRL 30
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
318-465 |
9.59e-10 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 60.06 E-value: 9.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 318 KELSLAGNELKDEGAQLLCESLLepgcQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGDSGVVELCKALG 397
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLL----CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 398303848 398 YPDTV-LRVLWLGDCDVTDSGCSSLATvLLANRSLRELDLSNNCMGDTGVLQLLESLKQPSCALQQLVL 465
Cdd:cd00116 77 LTKGCgLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
143-170 |
1.08e-05 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 42.01 E-value: 1.08e-05
10 20
....*....|....*....|....*...
gi 398303848 143 LSTLRELHLNDNPLGDEGLKLLCEGLRD 170
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
428-455 |
2.70e-04 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 38.16 E-value: 2.70e-04
10 20
....*....|....*....|....*...
gi 398303848 428 NRSLRELDLSNNCMGDTGVLQLLESLKQ 455
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
37-356 |
9.74e-114 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 338.56 E-value: 9.74e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 37 MSLDIQCEQLSDARWTELLPLIQQYQVVRLDDCGLTEVRCKDIRSAIQANPALTELSLRTNELG--DAGVGLVLQGLQNp 114
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGriPRGLQSLLQGLTK- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 115 TCKIQKLSLQNCSLTEAGCGVLPDVLRSlSTLRELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLA 194
Cdd:cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 195 SVLRVKPDFKELVLSNNDFHEAGIHTLCQGLKDSaCQLESLKLENCGITSANCKDLCDVVASKASLQELDLGSNKLGNTG 274
Cdd:cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 275 IAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNELKDEGAQLLCESLLEPGCQLESLWVKTC 354
Cdd:cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317
|
..
gi 398303848 355 SL 356
Cdd:cd00116 318 SF 319
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
259-454 |
2.91e-25 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 107.95 E-value: 2.91e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 259 SLQELDLGSNKLGNTGIAALCSGLLLPScRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNELKDEGAQLLCES 338
Cdd:COG5238 181 SVETVYLGCNQIGDEGIEELAEALTQNT-TVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 339 LlEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGDSGVVELCKALGYPDTvLRVLWLGDCDVTDSGC 418
Cdd:COG5238 260 L-KNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKT-LHTLNLAYNGIGAQGA 337
|
170 180 190
....*....|....*....|....*....|....*.
gi 398303848 419 SSLATVLLANRSLRELDLSNNCMGDTGVLQLLESLK 454
Cdd:COG5238 338 IALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLE 373
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
4-302 |
1.24e-20 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 94.09 E-value: 1.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 4 GSRLPLRVFFGSLPGLLNTWQSVWTRRLHCAPTMSLDIQCEQLSDARWTELLPLIQQYQVVRLDDCGLTEVRCKDIRSAI 83
Cdd:COG5238 125 KTLEDSLILYLALPRRINLIQVLKDPLGGNAVHLLGLAARLGLLAAISMAKALQNNSVETVYLGCNQIGDEGIEELAEAL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 84 QANPALTELSLRTNELGDAGVGLVLQGLQNPTcKIQKLSLQNCSLTEAGCGVLPDVLRSLSTLRELHLNDNPLGDEGLKL 163
Cdd:COG5238 205 TQNTTVTTLWLKRNPIGDEGAEILAEALKGNK-SLTTLDLSNNQIGDEGVIALAEALKNNTTVETLYLSGNQIGAEGAIA 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 164 LCEGLRDPQcRLEKLQLEYCNLTATSCEPLASVLRVKPDFKELVLSNNDFHEAGIHTLCQGLKDSAcQLESLKLENCGIT 243
Cdd:COG5238 284 LAKALQGNT-TLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENT-TLHSLDLSDNQIG 361
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 398303848 244 SANCKDLCDVVASKASLQELDLGSNKLGNTGIAALCSGLLLPscRLRTLWLWDCDVTAE 302
Cdd:COG5238 362 DEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTN--RLHTLILDGNLIGAE 418
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
92-396 |
1.84e-20 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 93.70 E-value: 1.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 92 LSLRTNELGDAGVGLVLQGLQNPTckIQKLSLQNCSLTEAGCGVLPDVLRSLSTLRELHLNDNPLGDEGLkllceglrdp 171
Cdd:COG5238 158 LLGLAARLGLLAAISMAKALQNNS--VETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGA---------- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 172 qcrleklqleycnltatscEPLASVLRVKPDFKELVLSNNDFHEAGIHTLCQGLKDSAcQLESLKLENCGITSANCKDLC 251
Cdd:COG5238 226 -------------------EILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNNT-TVETLYLSGNQIGAEGAIALA 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 252 DVVASKASLQELDLGSNKLGNTGIAALCSGlLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNELKDEG 331
Cdd:COG5238 286 KALQGNTTLTSLDLSVNRIGDEGAIALAEG-LQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEG 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398303848 332 AQLLCESLLEpgcqleslwvktcsltaascphfcsvltkNRSLFELQMSSNPLGDSGVVELCKAL 396
Cdd:COG5238 365 AIALAKYLEG-----------------------------NTTLRELNLGKNNIGKQGAEALIDAL 400
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
313-455 |
1.55e-18 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 87.92 E-value: 1.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 313 AKQSLKELSLAGNELKDEGAQLLCESLlEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGDSGVVEL 392
Cdd:COG5238 178 QNNSVETVYLGCNQIGDEGIEELAEAL-TQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIAL 256
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 398303848 393 CKALGYPDTVLRvLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDTGVLQLLESLKQ 455
Cdd:COG5238 257 AEALKNNTTVET-LYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQG 318
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
363-457 |
5.20e-13 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 70.59 E-value: 5.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 363 HFCSVLTKNRSLFELQMSSNPLGDSGVVELCKALGYPDTVlRVLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMG 442
Cdd:COG5238 171 ISMAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTV-TTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIG 249
|
90
....*....|....*
gi 398303848 443 DTGVLQLLESLKQPS 457
Cdd:COG5238 250 DEGVIALAEALKNNT 264
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
38-226 |
2.48e-11 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 65.58 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 38 SLDIQCEQLSDARWTELLP-LIQQYQVVRLDDCG--LTEVRCKDIRSAIQANPALTELSLRTNELGDAGVGLVLQGLQNp 114
Cdd:COG5238 240 TLDLSNNQIGDEGVIALAEaLKNNTTVETLYLSGnqIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQG- 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 115 TCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTLRELHLNDNPLGDEGLKLLCEGLRDPQcRLEKLQLEYCNLTATSCEPLA 194
Cdd:COG5238 319 NKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNT-TLRELNLGKNNIGKQGAEALI 397
|
170 180 190
....*....|....*....|....*....|....*
gi 398303848 195 SVLrVKPDFKELVLSNNDFH---EAGIHTLCQGLK 226
Cdd:COG5238 398 DAL-QTNRLHTLILDGNLIGaeaQQRLEQLLERIK 431
|
|
| LRR_RI_capping |
pfam18779 |
Capping Ribonuclease inhibitor Leucine Rich Repeat; Leucine-rich repeats are composed of a ... |
37-66 |
2.16e-10 |
|
Capping Ribonuclease inhibitor Leucine Rich Repeat; Leucine-rich repeats are composed of a beta-alpha unit. This repeat unit is found as capping unit (N- or C- terminal of the repeat region) of Ribonuclease Inhibitors.
Pssm-ID: 436731 Cd Length: 30 Bit Score: 55.58 E-value: 2.16e-10
10 20 30
....*....|....*....|....*....|
gi 398303848 37 MSLDIQCEQLSDARWTELLPLIQQYQVVRL 66
Cdd:pfam18779 1 MDLDIQCEELSDSRWAELLPSMQQCKVVRL 30
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
318-465 |
9.59e-10 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 60.06 E-value: 9.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 318 KELSLAGNELKDEGAQLLCESLLepgcQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGDSGVVELCKALG 397
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLL----CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 398303848 398 YPDTV-LRVLWLGDCDVTDSGCSSLATvLLANRSLRELDLSNNCMGDTGVLQLLESLKQPSCALQQLVL 465
Cdd:cd00116 77 LTKGCgLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
77-286 |
5.53e-07 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 51.86 E-value: 5.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 77 KDIRSAIQANPALTELSLRTNELGDagVGLVLQGLQNptckIQKLSLQNCSLTEagcgvLPDVLRSLSTLRELHLNDNPL 156
Cdd:COG4886 126 TDLPEELANLTNLKELDLSNNQLTD--LPEPLGNLTN----LKSLDLSNNQLTD-----LPEELGNLTNLKELDLSNNQI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 157 GDEGLKLlcEGLRdpqcRLEKLQLEYCNLTAtscepLASVLRVKPDFKELVLSNNDFHEagIHTLCQgLKdsacQLESLK 236
Cdd:COG4886 195 TDLPEPL--GNLT----NLEELDLSGNQLTD-----LPEPLANLTNLETLDLSNNQLTD--LPELGN-LT----NLEELD 256
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 398303848 237 LENCGITSAnckdlcDVVASKASLQELDLGSNKLGNTGIAALCSGLLLPS 286
Cdd:COG4886 257 LSNNQLTDL------PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNS 300
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
143-170 |
1.08e-05 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 42.01 E-value: 1.08e-05
10 20
....*....|....*....|....*...
gi 398303848 143 LSTLRELHLNDNPLGDEGLKLLCEGLRD 170
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
38-272 |
1.42e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 47.24 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 38 SLDIQCEQLSDarWTELLPLIQQYQVVRLDDCGLTevrckDIRSAIQANPALTELSLRTNELGDagVGLVLQGLQNptck 117
Cdd:COG4886 117 SLDLSGNQLTD--LPEELANLTNLKELDLSNNQLT-----DLPEPLGNLTNLKSLDLSNNQLTD--LPEELGNLTN---- 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 118 IQKLSLQNCSLTEagcgvLPDVLRSLSTLRELHLNDNPLGDEGLKLlcEGLRdpqcRLEKLQLEYCNLTatSCEPLASVl 197
Cdd:COG4886 184 LKELDLSNNQITD-----LPEPLGNLTNLEELDLSGNQLTDLPEPL--ANLT----NLETLDLSNNQLT--DLPELGNL- 249
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 398303848 198 rvkPDFKELVLSNNDFheagihtlcQGLKDSAC--QLESLKLENCGITSANCKDLCDVVASKASLQELDLGSNKLGN 272
Cdd:COG4886 250 ---TNLEELDLSNNQL---------TDLPPLANltNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELL 314
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
231-468 |
9.70e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.54 E-value: 9.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 231 QLESLKLENCGITsanckDLCDVVASKASLQELDLGSNKLgnTGIAALCSGLLlpscRLRTLWLWDCDVTaegckDLCRV 310
Cdd:COG4886 114 NLESLDLSGNQLT-----DLPEELANLTNLKELDLSNNQL--TDLPEPLGNLT----NLKSLDLSNNQLT-----DLPEE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398303848 311 LRAKQSLKELSLAGNELKDEGAQLlcESLlepgCQLESLWVKTCSLTAASCPhfcsvLTKNRSLFELQMSSNPLGDsgVV 390
Cdd:COG4886 178 LGNLTNLKELDLSNNQITDLPEPL--GNL----TNLEELDLSGNQLTDLPEP-----LANLTNLETLDLSNNQLTD--LP 244
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 398303848 391 ELCKAlgypdTVLRVLWLGDCDVTDsgcsslATVLLANRSLRELDLSNNCMGDTGVLQLLESLKQPSCALQQLVLYDI 468
Cdd:COG4886 245 ELGNL-----TNLEELDLSNNQLTD------LPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLL 311
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
428-455 |
2.70e-04 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 38.16 E-value: 2.70e-04
10 20
....*....|....*....|....*...
gi 398303848 428 NRSLRELDLSNNCMGDTGVLQLLESLKQ 455
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
371-396 |
1.34e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 36.23 E-value: 1.34e-03
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
286-313 |
1.69e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 35.85 E-value: 1.69e-03
10 20
....*....|....*....|....*...
gi 398303848 286 SCRLRTLWLWDCDVTAEGCKDLCRVLRA 313
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
200-227 |
4.14e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 34.69 E-value: 4.14e-03
10 20
....*....|....*....|....*...
gi 398303848 200 KPDFKELVLSNNDFHEAGIHTLCQGLKD 227
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
314-339 |
8.40e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 33.92 E-value: 8.40e-03
|
|