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Conserved domains on  [gi|431822395|ref|NP_001258884|]
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tubulin polyglutamylase complex subunit 2 isoform 8 [Homo sapiens]

Protein Classification

SMI1/KNR4 family protein( domain architecture ID 10657291)

SMI1/KNR4 family protein may be involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation

CATH:  3.40.1580.10
PubMed:  8289782
SCOP:  4002285

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
 44-84 3.00e-08

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


:

Pssm-ID: 214864  Cd Length: 127  Bit Score: 48.79  E-value: 3.00e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 431822395    44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKLD 84
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELP 41
 
Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
 44-84 3.00e-08

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


Pssm-ID: 214864  Cd Length: 127  Bit Score: 48.79  E-value: 3.00e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 431822395    44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKLD 84
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELP 41
 
Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
 44-84 3.00e-08

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


Pssm-ID: 214864  Cd Length: 127  Bit Score: 48.79  E-value: 3.00e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 431822395    44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKLD 84
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELP 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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