|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
9-213 |
2.34e-136 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 384.85 E-value: 2.34e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 9 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIF 88
Cdd:PLN03025 109 DSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIF 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 89 TAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVC 168
Cdd:PLN03025 189 TADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVV 268
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 525343614 169 KTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKT 213
Cdd:PLN03025 269 KNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLVR 313
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
9-209 |
8.00e-70 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 215.89 E-value: 8.00e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 9 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIF 88
Cdd:PRK00440 112 DNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYY 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 89 TAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGNIFRV 167
Cdd:PRK00440 192 VSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDyGLSGEDIIKQIHRE 271
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 525343614 168 CKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARL 209
Cdd:PRK00440 272 VWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKL 313
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
9-209 |
1.26e-48 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 170.02 E-value: 1.26e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 9 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIF 88
Cdd:PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 89 TAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAH-LWHLGYSPEDIIGNIFRV 167
Cdd:PRK04132 720 IAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREiLLKQGLSGEDVLVQMHRE 799
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 525343614 168 CKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARL 209
Cdd:PRK04132 800 VFNLPIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQF 841
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
10-209 |
4.28e-35 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 126.64 E-value: 4.28e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 10 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFT 89
Cdd:PRK12402 136 ALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 90 AQGDMRQALNNLQSTFSGFGFINSENVFKVC-DEPHPLLVKEMIQHCVNANIDEAYKILAHLwhL---GYSPEDIIGNIF 165
Cdd:PRK12402 216 AGGDLRKAILTLQTAALAAGEITMEAAYEALgDVGTDEVIESLLDAAEAGDFTDARKTLDDL--LideGLSGGEVLEELL 293
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 525343614 166 RVCKTFQmAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARL 209
Cdd:PRK12402 294 RVARSRY-RGDNLARLHRLAADADARLTDGANDRIQLEALLAEL 336
|
|
| Rep_fac_C |
pfam08542 |
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication ... |
123-208 |
4.22e-31 |
|
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A.
Pssm-ID: 462513 [Multi-domain] Cd Length: 87 Bit Score: 109.10 E-value: 4.22e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 123 PHPLLVKEMIQHCVNANIDEAYKIL-AHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQ 201
Cdd:pfam08542 1 PHPEDIEEILNSCLNGDFDEAYKKVrELLVEKGYSLQDIITQLHRVVKSLDLPEEVKLELLEKLGEIEYRLSEGASEKLQ 80
|
....*..
gi 525343614 202 MAGLLAR 208
Cdd:pfam08542 81 LSALLAA 87
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
9-211 |
3.63e-25 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 99.66 E-value: 3.63e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 9 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLmnviEKERVpyTDDGLEAIIF 88
Cdd:COG0470 111 DAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRPPSEEEALAWL----REEGV--DEDALEAILR 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 89 TAQGDMRQALNNLQSTFSGFGFInsENVFKVCDEPHPLlvkEMIQHCVNANIDEAYKILAHLwhlgyspedIIGNIFrvc 168
Cdd:COG0470 185 LAGGDPRAAINLLQALAGRKELL--EDLAALLSRDRAL---ELLDALLKAEALELLDWLLKW---------LLDNLP--- 247
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 525343614 169 ktFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQ 211
Cdd:COG0470 248 --LEYAGEDLARAYEALSEADRRLGRYANDRLLLEALLAKLGR 288
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
58-120 |
4.97e-22 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 85.27 E-value: 4.97e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 525343614 58 LTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVC 120
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAGGGVITEEDVYEVA 63
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
11-156 |
5.90e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 75.63 E-value: 5.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK14953 131 LTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS 210
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 91 QGDMRQALNNL-QSTFSGFGFINS---ENVFKVCDEPHpllVKEMIQHCVNANIDEAYKILAHLWHLGYS 156
Cdd:PRK14953 211 EGGMRDAASLLdQASTYGEGKVTIkvvEEFLGIVSQES---VRKFLNLLLESDVDEAIKFLRTLEEKGYN 277
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
6-113 |
1.36e-14 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 71.17 E-value: 1.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 6 ASNDSMTDgAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA-------QILTRLMNVIEKERVPY 78
Cdd:PHA02544 109 FDRLGLAD-AQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEeqiemmkQMIVRCKGILEAEGVEV 187
|
90 100 110
....*....|....*....|....*....|....*
gi 525343614 79 TDDGLEAIIFTAQGDMRQALNNLQStFSGFGFINS 113
Cdd:PHA02544 188 DMKVLAALVKKNFPDFRRTINELQR-YASTGKIDA 221
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
11-161 |
4.89e-12 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 64.06 E-value: 4.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:COG2812 126 LTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAA 205
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 525343614 91 QGDMRQALNNLQSTfSGFGFINSENvfkvcdephplLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDII 161
Cdd:COG2812 206 DGSMRDALSLLDQA-IAFGLLDRRE-----------LLLDLLEALLAGDVAALLALAEELAKRGRDLKRFL 264
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
11-193 |
2.84e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 59.01 E-value: 2.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK14962 129 LTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 91 QGDMRQALNNLQ--STFSGfGFINSENVFK----VCDEphplLVKEMIQHCVNANIDEAYKILAHLWHLGYSP------- 157
Cdd:PRK14962 209 SGGLRDALTMLEqvWKFSE-GKITLETVHEalglIPIE----VVRDYINAIFNGDVKRVFTVLDDVYYSGKDYevliqqa 283
|
170 180 190
....*....|....*....|....*....|....*....
gi 525343614 158 -EDIIGNIFRVcKTFQMAEYLK--LEFIKEIGYTHMKIA 193
Cdd:PRK14962 284 iEDLVEDLERE-RANDIIQVSRqlLNILREIKFAEEKRL 321
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
37-101 |
9.54e-09 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 54.32 E-value: 9.54e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 525343614 37 NASDKIIEPIQSRCAVLRYTKLTDA---QILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNL 101
Cdd:PRK13342 130 NPSFEVNPALLSRAQVFELKPLSEEdieQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
1-168 |
9.99e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 54.41 E-value: 9.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 1 MLELNASNdsmtdgaqqALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD 80
Cdd:PRK14964 127 MLSNSAFN---------ALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDE 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 81 DGLEAIIFTAQGDMRQALNNL-QSTFSGFGFINSENVFKV--CDEPHPLLvkEMIQHCVNANIDEAYKILAHLWHLgYSP 157
Cdd:PRK14964 198 ESLKLIAENSSGSMRNALFLLeQAAIYSNNKISEKSVRDLlgCVDKHILE--DLVEAILLGDAQSALNVFRELCNT-SNP 274
|
170
....*....|....*
gi 525343614 158 ----EDIIGNIFRVC 168
Cdd:PRK14964 275 viilEGMLQIIYEIC 289
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
11-107 |
6.34e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 52.18 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK14970 120 LSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKA 199
|
90
....*....|....*....
gi 525343614 91 QGDMRQALN--NLQSTFSG 107
Cdd:PRK14970 200 DGALRDALSifDRVVTFCG 218
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
18-197 |
3.98e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 49.42 E-value: 3.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 18 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 97
Cdd:PRK14961 138 ALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDA 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 98 LNNLQSTFS-GFGFINSENVFK---VCDEPHPLLVKEMIqhcVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQM 173
Cdd:PRK14961 218 LNLLEHAINlGKGNINIKNVTDmlgLLNEKQSFLLTDAL---LKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISM 294
|
170 180
....*....|....*....|....*...
gi 525343614 174 AEYLKL----EFIKEIGYTHMKIAEGVN 197
Cdd:PRK14961 295 SQSFPKiwntIFIKNYKNQIQKIAQNNK 322
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
18-151 |
8.49e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 48.92 E-value: 8.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 18 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 97
Cdd:PRK14957 138 ALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 525343614 98 LNNLQSTFS-------------GFGFINSENVFKVCD---EPHPLLVKEMIQH--CVNANIDEAYKILAHLW 151
Cdd:PRK14957 218 LSLLDQAISfcggelkqaqikqMLGIIDSEEVYSIINaiiDNDPKAILPAIKNlaLTESSADAVLDRIAEIW 289
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
61-103 |
1.22e-06 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 44.38 E-value: 1.22e-06
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 525343614 61 AQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQS 103
Cdd:cd18133 4 EQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQR 46
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
45-116 |
3.93e-06 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 46.84 E-value: 3.93e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 525343614 45 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV 116
Cdd:PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDV 218
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
11-97 |
6.10e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 46.37 E-value: 6.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK14963 128 MSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207
|
....*..
gi 525343614 91 QGDMRQA 97
Cdd:PRK14963 208 DGAMRDA 214
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-109 |
6.69e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 46.34 E-value: 6.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 1 MLELNASNdsmtdgaqqALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD 80
Cdd:PRK14950 131 MLSTAAFN---------ALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEP 201
|
90 100
....*....|....*....|....*....
gi 525343614 81 DGLEAIIFTAQGDMRQALNNLQSTFSGFG 109
Cdd:PRK14950 202 GALEAIARAATGSMRDAENLLQQLATTYG 230
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-101 |
8.63e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 45.89 E-value: 8.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 1 MLELNASNdsmtdgaqqALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD 80
Cdd:PRK14965 130 MLSTNAFN---------ALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISD 200
|
90 100
....*....|....*....|.
gi 525343614 81 DGLEAIIFTAQGDMRQALNNL 101
Cdd:PRK14965 201 AALALVARKGDGSMRDSLSTL 221
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
11-116 |
1.51e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 45.12 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK14969 131 LSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210
|
90 100
....*....|....*....|....*..
gi 525343614 91 QGDMRQALNNL-QSTFSGFGFINSENV 116
Cdd:PRK14969 211 AGSMRDALSLLdQAIAYGGGTVNESEV 237
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
18-133 |
4.73e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 43.57 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 18 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 97
Cdd:PRK14958 138 ALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDA 217
|
90 100 110
....*....|....*....|....*....|....*..
gi 525343614 98 LNNL-QSTFSGFGFINSENVFKVCDEPHPLLVKEMIQ 133
Cdd:PRK14958 218 LSLLdQSIAYGNGKVLIADVKTMLGTIEPLLLFDILE 254
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
11-116 |
1.04e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.77 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK08691 131 LSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210
|
90 100
....*....|....*....|....*..
gi 525343614 91 QGDMRQALNNL-QSTFSGFGFINSENV 116
Cdd:PRK08691 211 AGSMRDALSLLdQAIALGSGKVAENDV 237
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
11-98 |
2.89e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.37 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK07003 131 LTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210
|
....*...
gi 525343614 91 QGDMRQAL 98
Cdd:PRK07003 211 QGSMRDAL 218
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
9-98 |
3.21e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 40.79 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 9 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKerVPYTDDGLEAIIF 88
Cdd:PRK09112 151 DDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--QGSDGEITEALLQ 228
|
90
....*....|
gi 525343614 89 TAQGDMRQAL 98
Cdd:PRK09112 229 RSKGSVRKAL 238
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
58-102 |
4.53e-04 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 37.61 E-value: 4.53e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 525343614 58 LTDAQILTRLMNVIEKER------VPYTDDGLEAIIFTAQGDMRQALNNLQ 102
Cdd:cd18139 1 LSEEDLEKLLKRALEDKErggdrkVTIDDEALELLAEAADGDARSALNLLE 51
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1-107 |
8.21e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 39.76 E-value: 8.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 1 MLELNASNdsmtdgaqqALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD 80
Cdd:PRK14971 132 MLSQAAFN---------AFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEP 202
|
90 100
....*....|....*....|....*....
gi 525343614 81 DGLEAIIFTAQGDMRQALN--NLQSTFSG 107
Cdd:PRK14971 203 EALNVIAQKADGGMRDALSifDQVVSFTG 231
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
18-116 |
9.01e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 39.65 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 18 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQA 97
Cdd:PRK14960 137 ALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDA 216
|
90 100
....*....|....*....|
gi 525343614 98 LN-NLQSTFSGFGFINSENV 116
Cdd:PRK14960 217 LSlTDQAIAYGQGAVHHQDV 236
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
11-97 |
9.62e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 39.54 E-value: 9.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK14954 139 LSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218
|
....*..
gi 525343614 91 QGDMRQA 97
Cdd:PRK14954 219 QGSMRDA 225
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
11-98 |
1.66e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 39.09 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK12323 136 LTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215
|
....*...
gi 525343614 91 QGDMRQAL 98
Cdd:PRK12323 216 QGSMRDAL 223
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
11-99 |
2.76e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 38.39 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTdaqiLTRLMNVIEK----ERVPYTDDGLEAI 86
Cdd:PRK14956 133 LTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVP----LSVLQDYSEKlckiENVQYDQEGLFWI 208
|
90
....*....|...
gi 525343614 87 IFTAQGDMRQALN 99
Cdd:PRK14956 209 AKKGDGSVRDMLS 221
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
11-164 |
3.05e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 37.92 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 11 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 90
Cdd:PRK06645 140 LSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 525343614 91 QGDMRQA---LNNLQSTFSGFGFINSENVF-KVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNI 164
Cdd:PRK06645 220 EGSARDAvsiLDQAASMSAKSDNIISPQVInQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESV 297
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
46-170 |
4.86e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 37.54 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 46 IQSRCAvlRY--TKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNL-QS-TFSGfGFINSENVFK--- 118
Cdd:PRK05563 166 ILSRCQ--RFdfKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILdQAiSFGD-GKVTYEDALEvtg 242
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 119 -VCDEphplLVKEMIQHCVNANIDEAYKILAHLWHLGYSP----EDIIGnIFR---VCKT 170
Cdd:PRK05563 243 sVSQE----ALDDLVDAIVEGDVAKALKILEELLDEGKDPnrfiEDLIY-YLRdllLVKT 297
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
58-99 |
5.62e-03 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 34.40 E-value: 5.62e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 525343614 58 LTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALN 99
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALS 42
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
15-97 |
7.12e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 36.79 E-value: 7.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 525343614 15 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDM 94
Cdd:PRK14955 143 AFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSM 222
|
...
gi 525343614 95 RQA 97
Cdd:PRK14955 223 RDA 225
|
|
|