|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
596-1309 |
1.99e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 1.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 596 LQAKLSSFEET-NKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQ 674
Cdd:TIGR02168 237 LREELEELQEElKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL----A 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 675 SLFSEVASLKEQMHKSRflSQVVEDSEptrnqNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK 754
Cdd:TIGR02168 313 NLERQLEELEAQLEELE--SKLDELAE-----ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 755 DQIAyVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDA--LRLREANEEIEKLKLEIEKLKAESGN-----P 827
Cdd:TIGR02168 386 SKVA-QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEELEEELEELQEELERleealE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 828 SIRQKIRLKDKAADAKK--IQDLERQVKEMEGIL--KRRYPNSLPALILAASAAGDTVD--KNTVEFMEKRIKKLEADLE 901
Cdd:TIGR02168 465 ELREELEEAEQALDAAEreLAQLQARLDSLERLQenLEGFSEGVKALLKNQSGLSGILGvlSELISVDEGYEAAIEAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 902 G--------KDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDS-PRIKALEKELDDIKEAHQITVRNLEAE 972
Cdd:TIGR02168 545 GrlqavvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 973 IDVLKH-QNAELDVKKNDKD------DEDFQSIEFQVEQAHAKAKLVRLNeelaaKKREIQDLSKTVERLQ------KDR 1039
Cdd:TIGR02168 625 VLVVDDlDNALELAKKLRPGyrivtlDGDLVRPGGVITGGSAKTNSSILE-----RRREIEELEEKIEELEekiaelEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1040 RMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSK---LYQPHTFTDSHVSEVLQENYRLKNELEGLISEKNE 1116
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1117 LKMKSEAVMNQFENSMRRVKEDTAAhIASLKASHQREIEKLLcqnaveNSSSKVAELNRKIATQEVLIRHFQSQVNELQS 1196
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREA-LDELRAELTLLNEEAA------NLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1197 KQESLVVS----EVREEILQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEmrhaqreqelqqiiqqtHQVVETEQ 1272
Cdd:TIGR02168 853 DIESLAAEieelEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE-----------------SKRSELRR 915
|
730 740 750
....*....|....*....|....*....|....*..
gi 555289992 1273 NKEvEKWKRLAQLKNReLEKFRTELDSILDVLRELHR 1309
Cdd:TIGR02168 916 ELE-ELREKLAQLELR-LEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
713-1249 |
7.36e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 7.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 713 AELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEEThKQEISRLQKRLqwyAEN 792
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-EERLEELEEEL---AEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 793 QELLDKDALRLREANEEIEKLKLEIEKLKAESGNpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLPALIL 872
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAE---AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 873 AASAAGDtvdkntvefmEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPR-IKAL 951
Cdd:COG1196 406 EEAEEAL----------LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEeAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 952 EKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKT 1031
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1032 VERLQKDRRmmLSNQNSKGREE----MSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNEL 1107
Cdd:COG1196 556 DEVAAAAIE--YLKAAKAGRATflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1108 EGL-ISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRH 1186
Cdd:COG1196 634 AALrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 555289992 1187 FQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVgLEKKIKQMEMR 1249
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE-LERELERLERE 775
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
625-1040 |
1.81e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQ--QENERLYNQVKDLQEQNKKNEERMfKENQSLFSEVASLKEQMHKSRF-LSQVVEDSE 701
Cdd:COG4717 109 AELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERL-EELRELEEELEELEAELAELQEeLEELLEQLS 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 702 PTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQ------------------IAYVTGE 763
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallaLLGLGGS 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 764 KLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAK 843
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 844 KIQDLERQVKEMEgilkrrypnslpalilaasaagdtvDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKI 923
Cdd:COG4717 348 ELQELLREAEELE-------------------------EELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKE 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 924 QYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAhqitVRNLEAEIDVLKHQNAELDVKKND-KDDEDFQSIEFQV 1002
Cdd:COG4717 403 ELEELEEQLEELLGELEELLEALDEEELEEELEELEEE----LEELEEELEELREELAELEAELEQlEEDGELAELLQEL 478
|
410 420 430
....*....|....*....|....*....|....*...
gi 555289992 1003 EQAhaKAKLVRLNEELAAKKREIQDLSKTVERLQKDRR 1040
Cdd:COG4717 479 EEL--KAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
541-1040 |
1.82e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 541 KRVQEAEDKWRGAQALIEQIKATfSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLssfEETNKKQRwlhfgeaad 620
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAE-LEELEAELEELEAELAELEAELEELRLELEELELEL---EEAQAEEY--------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 621 pVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQSLFSEVASLKEQMHKSRFLSQVVEDS 700
Cdd:COG1196 292 -ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 701 EPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyvtgEKLYEIKILEETHKQEIS 780
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE----ELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 781 RLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGnpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILK 860
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA----EAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 861 RRYPNSLPALIL------------AASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAkkSLRTMEQQFQKMKIQYEQR 928
Cdd:COG1196 519 LRGLAGAVAVLIgveaayeaaleaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL--PLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 929 LEQQEQLLACKLNQHDsprikALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAK 1008
Cdd:COG1196 597 IGAAVDLVASDLREAD-----ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510
....*....|....*....|....*....|..
gi 555289992 1009 AKLVRLNEELAAKKREIQDLSKTVERLQKDRR 1040
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEE 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
708-1049 |
7.94e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 7.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 708 FTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEkLYEikileetHKQEISRLQKRLQ 787
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE-LYA-------LANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 788 WYAENQELLDKDalrLREANEEIEKLKLEIEKLKAEsgnpsirqkirlkdKAADAKKIQDLERQVKEMEGILKRrypnsl 867
Cdd:TIGR02168 306 ILRERLANLERQ---LEELEAQLEELESKLDELAEE--------------LAELEEKLEELKEELESLEAELEE------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 868 palilaasaagdtvdkntvefmekrikkleadLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcklnqhdspR 947
Cdd:TIGR02168 363 --------------------------------LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN---------E 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 948 IKALEKELDDIKEAHQITVRNLEAEIDVLkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQD 1027
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340
....*....|....*....|..
gi 555289992 1028 LSKTVERLQKDRRMMLSNQNSK 1049
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENL 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
581-897 |
1.35e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 581 QQEKELFKLNQDNYILQAKLSS-FEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEqetLLQGYQQENERLYNQVKDLQ 659
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSlQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 660 --EQNKKNEERMFKENQSlfsEVASLKEQMHKSRFLSQVVEDSE-PTRNQNFTDLLAELRMAQKEKDSLLEDI----KRL 732
Cdd:TIGR02169 748 slEQEIENVKSELKELEA---RIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELSKLEEEVSRIEARLREIeqklNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 733 KQDKQALEVDFEKMKKERDQAKDQIAYVtGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALR----LREANE 808
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSI-EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEleaqLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 809 EIEKLKLEIEKLKAesgnpsirqkiRLKDKAAdakKIQDLERQVKEMEGILKRRYPNSLPALILaasaagDTVDKNtVEF 888
Cdd:TIGR02169 904 KIEELEAQIEKKRK-----------RLSELKA---KLEALEEELSEIEDPKGEDEEIPEEELSL------EDVQAE-LQR 962
|
....*....
gi 555289992 889 MEKRIKKLE 897
Cdd:TIGR02169 963 VEEEIRALE 971
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
711-982 |
1.41e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 711 LLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIayvtgeklyeikileETHKQEISRLQKRLQWYA 790
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---------------AALERRIAALARRIRALE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 791 EnqelldkdalRLREANEEIEKLKLEIEKLKaesgnpsirqkirlkdkaadaKKIQDLERQVKEMEGILKRRYPNSLPAL 870
Cdd:COG4942 76 Q----------ELAALEAELAELEKEIAELR---------------------AELEAQKEELAELLRALYRLGRQPPLAL 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 871 ILAASAAGDTVD-----KNTVEFMEKRIKKLEADLEGKD------EDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcK 939
Cdd:COG4942 125 LLSPEDFLDAVRrlqylKYLAPARREQAEELRADLAELAalraelEAERAELEALLAELEEERAALEALKAERQKLLA-R 203
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 555289992 940 LNQhdspRIKALEKELDDIKEAhqitVRNLEAEIDVLKHQNAE 982
Cdd:COG4942 204 LEK----ELAELAAELAELQQE----AEELEALIARLEAEAAA 238
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
712-1143 |
1.44e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 712 LAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIayvtgeKLYEIKILEETHKQEISRLQKRLQWYAE 791
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL------EKLEKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 792 NQELLDKDALRLREANEEIEKLKLEIEKLKAE----SGNPSIRQKIRLKDKAADAK------------------KIQDLE 849
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEEleelLEQLSLATEEELQDLAEELEelqqrlaeleeeleeaqeELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 850 RQVKEMEG----------ILKRRYPNSLPALILAASAAGDTVDKNTVEFMEK---RIKKLEADLEGKDEDAKKSLRTMEQ 916
Cdd:COG4717 227 EELEQLENeleaaaleerLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 917 QFQKMKIQYEQRLEQQEQLLACKLNQHDSP-RIKALEKELDDIKEAH-QITVRNLEAEIDVLKHQNAELDVKKNDKDDED 994
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPeELLELLDRIEELQELLrEAEELEEELQLEELEQEIAALLAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 995 FQSIEFQVEQAHA-KAKLVRLNEELAAKKREIQDLSKTVERLQkdrrmmLSNQNSKGREEMSAKRAKKDVLHSSKGNANS 1073
Cdd:COG4717 387 LRAALEQAEEYQElKEELEELEEQLEELLGELEELLEALDEEE------LEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1074 FPGTLDsklyqphtfTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVmnqfENSMRRVKEDTAAHI 1143
Cdd:COG4717 461 ELEQLE---------EDGELAELLQELEELKAELRELAEEWAALKLALELL----EEAREEYREERLPPV 517
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
528-1303 |
2.12e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 528 YCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEETN 607
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 608 KKQRwlhFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkenqslfsevaSLKEQM 687
Cdd:pfam02463 272 KENK---EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK--------------ELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 688 HKSRFLSQVVEDSEPTRNQNFT---DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEK 764
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEeeeELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 765 LYEIKILEETHKQEISRLqkrlqwyAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKirLKDKAADAKK 844
Cdd:pfam02463 415 RQLEDLLKEEKKEELEIL-------EEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK--ETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 845 IQDLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQfQKMKIQ 924
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD-EVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 925 YEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQ 1004
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1005 AHAKAKLVRLNEELAAKKREIQDLSKT-----VERLQKDRRMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLD 1079
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELtkellEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1080 SKLyqphTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIEKLLC 1159
Cdd:pfam02463 725 DRV----QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1160 QNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVGL 1239
Cdd:pfam02463 801 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELE 880
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 555289992 1240 EKKIKQMEMrHAQREQELQQIIQQTHQVVETEQNKEVEKWKRLAQLKNRELEKFRTELDSILDV 1303
Cdd:pfam02463 881 EQKLKDELE-SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLE 943
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
558-1305 |
2.35e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 558 EQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEETNKKqrwLHFGEAADPVTGEKLKQIQKEIQEQ 637
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH---LREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 638 ---ETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKE-------------------NQSLFSEVASLKEQMHKSRFLSQ 695
Cdd:TIGR00618 256 lkkQQLLKQLRARIEELRAQEAVLEETQERINRARKAAplaahikavtqieqqaqriHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 696 VVEDSEPTRNQNFTDLLAELRMAQK------------EKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE 763
Cdd:TIGR00618 336 QQSSIEEQRRLLQTLHSQEIHIRDAhevatsireiscQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 764 KLYEIKI---LEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAesgnpsiRQKIRLKDKAA 840
Cdd:TIGR00618 416 TSAFRDLqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT-------KEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 841 DAKKIQDLERQvKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK 920
Cdd:TIGR00618 489 KAVVLARLLEL-QEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 921 MkIQYEQRLEQQEQLLACKLNQhdsprikaLEKELDDIKEAHQitvRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIE- 999
Cdd:TIGR00618 568 I-QQSFSILTQCDNRSKEDIPN--------LQNITVRLQDLTE---KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLq 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1000 -FQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRmmlsnqnskgreemsaKRAKKDVLHSSKGNANSFPGTL 1078
Cdd:TIGR00618 636 qCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS----------------RQLALQKMQSEKEQLTYWKEML 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1079 DSKLYQPHTftdshVSEVLQENYRLKNELE-GLISEKNELKMKSEAvMNQFENSMRRVKEDTAAHIASlkaSHQREIEKL 1157
Cdd:TIGR00618 700 AQCQTLLRE-----LETHIEEYDREFNEIEnASSSLGSDLAAREDA-LNQSLKELMHQARTVLKARTE---AHFNNNEEV 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1158 LcqnAVENSSSKVAELNRKIATQevlIRHFQSQVNELQSKQEslvvsEVREEILQKEITKLLEELREAKENhtpEMKHFV 1237
Cdd:TIGR00618 771 T---AALQTGAELSHLAAEIQFF---NRLREEDTHLLKTLEA-----EIGQEIPSDEDILNLQCETLVQEE---EQFLSR 836
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 555289992 1238 GLEKKIKQMEMRHAQREQELQQIIQQTHQVVETEQNKEVEKWKRLAQLKNR----ELEKFRTELDSILDVLR 1305
Cdd:TIGR00618 837 LEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQfdgdALIKFLHEITLYANVRL 908
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
710-920 |
2.37e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 710 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEvdfekmkkERDQAKDQIAYVTGEklyEIKIleETHKQEISRLQKRLqwy 789
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQ--------ERREALQRLAEYSWD---EIDV--ASAEREIAELEAEL--- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 790 aenqELLDKDALRLREANEEIEKLKLEIEKLKaesgnpsiRQKIRLKDKAADA-KKIQDLERQVKEMEGILKRRYPNSLP 868
Cdd:COG4913 678 ----ERLDASSDDLAALEEQLEELEAELEELE--------EELDELKGEIGRLeKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 555289992 869 ALILA-----ASAAGDTVDKNTVEFMEKRIKKLEADLEGkdedAKKSLRTMEQQFQK 920
Cdd:COG4913 746 ELRALleerfAAALGDAVERELRENLEERIDALRARLNR----AEEELERAMRAFNR 798
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
603-1199 |
3.00e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.65 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 603 FEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKneerMFKENQSLFSEVAS 682
Cdd:pfam05483 84 YKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKD----LIKENNATRHLCNL 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 683 LKEQMHKSRFLSQVVEDSEPTRNQNFTDL--------LAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK 754
Cdd:pfam05483 160 LKETCARSAEKTKKYEYEREETRQVYMDLnnniekmiLAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKE 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 755 DQIAYV------TGEKLYEIKILEETHKQEISRLQKRLQWYAENqelldkdalrLREANEEIEKLKLEIEKLKAESGNPS 828
Cdd:pfam05483 240 KQVSLLliqiteKENKMKDLTFLLEESRDKANQLEEKTKLQDEN----------LKELIEKKDHLTKELEDIKMSLQRSM 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 829 IRQKIRLKDKAADAKKIQDL-ERQVKEMEGILKRRYPNSLPALILAASAAGDT----VDKNTVEFMEKRIKKLEADLEGK 903
Cdd:pfam05483 310 STQKALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEellrTEQQRLEKNEDQLKIITMELQKK 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 904 DEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLK----HQ 979
Cdd:pfam05483 390 SSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeHY 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 980 NAELDVKKNDKDDEDFQSIEFQV--------------EQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQkDRRMMLSN 1045
Cdd:pfam05483 470 LKEVEDLKTELEKEKLKNIELTAhcdklllenkeltqEASDMTLELKKHQEDIINCKKQEERMLKQIENLE-EKEMNLRD 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1046 QNSKGREEMSAKRAK-KDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNeLEGLISEKNELKMKSEAV 1124
Cdd:pfam05483 549 ELESVREEFIQKGDEvKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN-IEELHQENKALKKKGSAE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1125 MNQFE------NSMRRVKEDTAAHIASLKASHQREIE--KLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQS 1196
Cdd:pfam05483 628 NKQLNayeikvNKLELELASAKQKFEEIIDNYQKEIEdkKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVA 707
|
...
gi 555289992 1197 KQE 1199
Cdd:pfam05483 708 LME 710
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
625-1307 |
4.19e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 4.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 704
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 705 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKlyEIKILE-ETHKQEISRLQ 783
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK--EDKALEiKKQEWKLEQLA 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 784 KRLQwyAENQELLDKDAlRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMeGILKRRY 863
Cdd:TIGR02169 462 ADLS--KYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL-GSVGERY 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 864 pnsLPALILAASA-------AGDTVDKNTVEFMEKR------------IKKLEADLEGKDEDAKK----SLRTMEQQFQK 920
Cdd:TIGR02169 538 ---ATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRkagratflplnkMRDERRDLSILSEDGVIgfavDLVEFDPKYEP 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 921 MKIQYEQRLEQQEQLLACKlNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDdedfqsiEF 1000
Cdd:TIGR02169 615 AFKYVFGDTLVVEDIEAAR-RLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLE-------GL 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1001 QVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMmLSNQNSKGREEMSAKRAKKDVLhsskgnansfpgtlds 1080
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ-LEQEEEKLKERLEELEEDLSSL---------------- 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1081 klyqphtftdshvSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVK-EDTAAHIASLKASHQReIEKLLc 1159
Cdd:TIGR02169 750 -------------EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSR-IEARL- 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1160 qnavenssskvAELNRKIATQEVLIRHFQSQVNELQSKQESLV--VSEVREEI--LQKEITKLLEELREAKENHTPEMKH 1235
Cdd:TIGR02169 815 -----------REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeqIKSIEKEIenLNGKKEELEEELEELEAALRDLESR 883
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 555289992 1236 FVGLEKKIKQME--MRHAQREqelqqiiqqthqvvETEQNKEVEKWKRLAQLKNRELEKFRTELDSILDVLREL 1307
Cdd:TIGR02169 884 LGDLKKERDELEaqLRELERK--------------IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
625-835 |
6.91e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 6.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQN---------------------KKNEERMFKENQSLFSEVASL 683
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaalarriraleqelaaleaelAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 684 KEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE 763
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 555289992 764 KLyEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRL 835
Cdd:COG4942 187 RA-ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
710-967 |
1.06e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 710 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQKRLQWY 789
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 790 AENQELLDKdalRLREANEEIEKLKLEIEKLKAESGNPSIRqKIRLKDKAADAKKIQDLERQ------------------ 851
Cdd:TIGR02169 314 ERELEDAEE---RLAKLEAEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELEDLRAeleevdkefaetrdelkd 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 852 -VKEMEGILKRRYP---NSLPALILAASAAGDTVD-KNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEqQFQKMKIQYE 926
Cdd:TIGR02169 390 yREKLEKLKREINElkrELDRLQEELQRLSEELADlNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE-QLAADLSKYE 468
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 555289992 927 QRLEQQEQllacKLNQHDSpRIKALEKELdDIKEAHQITVR 967
Cdd:TIGR02169 469 QELYDLKE----EYDRVEK-ELSKLQREL-AEAEAQARASE 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
620-1185 |
1.15e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 620 DPVTGEKLKQIQKEIQEqetlLQGYQQENERLYNQVKDLQEQNKKNEERmfkenQSLFSEVASLKEQMHKSRFLsqvved 699
Cdd:COG4913 220 EPDTFEAADALVEHFDD----LERAHEALEDAREQIELLEPIRELAERY-----AAARERLAELEYLRAALRLW------ 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 700 septRNQNFTDLLaelrmaQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEI 779
Cdd:COG4913 285 ----FAQRRLELL------EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 780 SRLQKRLQWYaenQELLDKDALRLREANEEIEKLKLEIEKLKAESGnpsiRQKIRLKDKAADAK-KIQDLERQVKEMEG- 857
Cdd:COG4913 355 EERERRRARL---EALLAALGLPLPASAEEFAALRAEAAALLEALE----EELEALEEALAEAEaALRDLRRELRELEAe 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 858 --ILKRRyPNSLPALILA-----ASAAGDTVDKNTV--EFMEkrIKKLEADLEG---------------KDEDAKKSLRT 913
Cdd:COG4913 428 iaSLERR-KSNIPARLLAlrdalAEALGLDEAELPFvgELIE--VRPEEERWRGaiervlggfaltllvPPEHYAAALRW 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 914 MEQQFQKMKIQYE---------QRLEQQEQLLACKLNQHDSP-------------------------------------- 946
Cdd:COG4913 505 VNRLHLRGRLVYErvrtglpdpERPRLDPDSLAGKLDFKPHPfrawleaelgrrfdyvcvdspeelrrhpraitragqvk 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 947 --------------------------RIKALEKELDDIKEAH---QITVRNLEAEIDVL-KHQNAELDVKKNDKDDEDFQ 996
Cdd:COG4913 585 gngtrhekddrrrirsryvlgfdnraKLAALEAELAELEEELaeaEERLEALEAELDALqERREALQRLAEYSWDEIDVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 997 SIEFQVEQAHAK--------AKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREEmsakRAKKDVLHSSK 1068
Cdd:COG4913 665 SAEREIAELEAElerldassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL----DELQDRLEAAE 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1069 GNANSFPGT-LDSKLYQPHtfTDSHVSEVLQenyRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIAS-- 1145
Cdd:COG4913 741 DLARLELRAlLEERFAAAL--GDAVERELRE---NLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESlp 815
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 555289992 1146 --------LKAS----HQREIEKLLcqnaVENSSSKVAELNRKIATQEVLIR 1185
Cdd:COG4913 816 eylalldrLEEDglpeYEERFKELL----NENSIEFVADLLSKLRRAIREIK 863
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
535-1042 |
1.24e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 535 KKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELEN------KLEELKKQQEKELFKLNQDNYILQAKLSSFEETNK 608
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeleELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 609 KQRwlhfGEAADpvTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQmh 688
Cdd:COG1196 306 RLE----ERRRE--LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-- 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 689 KSRFLSQVVEDSEPTRNQNftDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyvtgEKLYEI 768
Cdd:COG1196 378 EEELEELAEELLEALRAAA--ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE----EAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 769 KILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIE----------KLKAESGNPSI--------- 829
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAdyegflegvkAALLLAGLRGLagavavlig 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 830 ----------------RQKIRLKDKAADAKKIQDLERQVKEMEGIL-----KRRYPNSLPALILAASAA----------- 877
Cdd:COG1196 532 veaayeaaleaalaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiRARAALAAALARGAIGAAvdlvasdlrea 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 878 ------------GDTVDKNTVEFMEKRIKKLEADL-EGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKlnqhd 944
Cdd:COG1196 612 daryyvlgdtllGRTLVAARLEAALRRAVTLAGRLrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE----- 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 945 spRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAkkrE 1024
Cdd:COG1196 687 --RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP---D 761
|
570
....*....|....*...
gi 555289992 1025 IQDLSKTVERLQKDRRMM 1042
Cdd:COG1196 762 LEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
577-1230 |
1.35e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 577 ELKKQQEK-ELFKlnqdnyilqaKLSSFEETNKKQRWLHfgeaadpvtgeKLKQIQKEIQEQETLLQGYQQENERLYNQV 655
Cdd:COG1196 204 PLERQAEKaERYR----------ELKEELKELEAELLLL-----------KLRELEAELEELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 656 KDLQEQNKKNEERMFKENQSLfsevaslkeqmhksrflsqvvedseptrnqnfTDLLAELRMAQKEKDSLLEDIKRLKQD 735
Cdd:COG1196 263 AELEAELEELRLELEELELEL--------------------------------EEAQAEEYELLAELARLEQDIARLEER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 736 KQALEVDFEKMKKERDQAKDQIAyvtgeklyEIKILEETHKQEISRLQKRLqwyAENQELLDKDALRLREANEEIEKLKL 815
Cdd:COG1196 311 RRELEERLEELEEELAELEEELE--------ELEEELEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 816 EIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTvefMEKRIKK 895
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE---EEAELEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 896 LEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSP---RIKALEKELDDIKEAHQITVRNLEAE 972
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLegvKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 973 IDVLKHQNAELDVKKNDKDDEDFQS-IEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGR 1051
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAaIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1052 EEMSAKRAKKDVLHsSKGNANSFPGTLDSKLYQphTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENS 1131
Cdd:COG1196 617 VLGDTLLGRTLVAA-RLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1132 MRRvkEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVnELQSKQESLVVSEVREEI- 1210
Cdd:COG1196 694 ELE--EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE-ALEELPEPPDLEELERELe 770
|
650 660
....*....|....*....|....*...
gi 555289992 1211 -LQKEITKL-------LEELREAKENHT 1230
Cdd:COG1196 771 rLEREIEALgpvnllaIEEYEELEERYD 798
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
592-818 |
1.57e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 592 DNYILQAKLSSFEETNKKQRWLhfgeaadpvtGEKLKQIQKEIQEQETLLQGYQQENerlynQVKDLQEQNKKNEERMFK 671
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFL----------EEQLPELRKELEEAEAALEEFRQKN-----GLVDLSEEAKLLLQQLSE 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 672 ENQSLFSEVASLKEQMHKSRFLSQVVEDSEPT-----RNQNFTDLLAELRMAQKEKDSLLE-------DIKRLKQDKQAL 739
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRAQLGSGPDAlpellQSPVIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 555289992 740 EvdfEKMKKERDQAKDQIayvtgeklyeikileethKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIE 818
Cdd:COG3206 304 R---AQLQQEAQRILASL------------------EAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
800-1037 |
1.62e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 800 ALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRrypnslpalilaasaagd 879
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA------------------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 880 tvdkntvefMEKRIKKLEADLegkdEDAKKSLRTMEQQFQKMkIQYEQRLEQQEQLLAcKLNQHDSPRIKALEKELDDIK 959
Cdd:COG4942 81 ---------LEAELAELEKEI----AELRAELEAQKEELAEL-LRALYRLGRQPPLAL-LLSPEDFLDAVRRLQYLKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 960 EAHQITVRNLEAEIDVLKHQNAELDVKKNDK----DDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERL 1035
Cdd:COG4942 146 PARREQAEELRADLAELAALRAELEAERAELeallAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
..
gi 555289992 1036 QK 1037
Cdd:COG4942 226 EA 227
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
706-1309 |
1.65e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 706 QNFTDLLAELRmaQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyVTGEKLYEIKILEETHKQEISRLQKR 785
Cdd:TIGR02168 213 ERYKELKAELR--ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQ-ELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 786 LQwyaenqelldkdalrlrEANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILkrrypn 865
Cdd:TIGR02168 290 LY-----------------ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL------ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 866 slpalilaasaagdTVDKNTVEFMEKRIKKLEADLEgkdeDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcklnqhds 945
Cdd:TIGR02168 347 --------------EELKEELESLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNN-------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 946 pRIKALEKELDDIKEAHQITVRNLEAEIDVLkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREI 1025
Cdd:TIGR02168 401 -EIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1026 QDLSKTVERLQKDRRMMLSNQNskgrEEMSAKRAKKDVLHsskgNANSFPGTLD--SKLYQ------------------- 1084
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLK----NQSGLSGILGvlSELISvdegyeaaieaalggrlqa 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1085 -----------------PHTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKE---------- 1137
Cdd:TIGR02168 550 vvvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvd 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1138 --DTAAHIASLKASHQREIEK---------------LLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQES 1200
Cdd:TIGR02168 630 dlDNALELAKKLRPGYRIVTLdgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1201 lvvsevreeiLQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEMRHAQREQEL---QQIIQQTHQVVETEQNKEVE 1277
Cdd:TIGR02168 710 ----------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELtelEAEIEELEERLEEAEEELAE 779
|
650 660 670
....*....|....*....|....*....|....*...
gi 555289992 1278 KWKRLAQLK------NRELEKFRTELDSILDVLRELHR 1309
Cdd:TIGR02168 780 AEAEIEELEaqieqlKEELKALREALDELRAELTLLNE 817
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
649-1040 |
4.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 649 ERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEptrnqnftdllAELRMAQKEKDSLLED 728
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELE-----------EELEELEAELEELREE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 729 IKRLKQDKQALEVDFEKMKKER---------DQAKDQIAYVTgEKLYEIKILEETH---KQEISRLQKRLQWYAENQelL 796
Cdd:COG4717 118 LEKLEKLLQLLPLYQELEALEAelaelperlEELEERLEELR-ELEEELEELEAELaelQEELEELLEQLSLATEEE--L 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 797 DKDALRLREANEEIEKLKLEIEKLKAESGNpsIRQKIrlkDKAADAKKIQDLERQVKEMEGILKrrypnsLPALILAASA 876
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEE--LEEEL---EQLENELEAAALEERLKEARLLLL------IAAALLALLG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 877 AGDTVDKNTVEFMEK---RIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSP-RIKALE 952
Cdd:COG4717 264 LGGSLLSLILTIAGVlflVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPeELLELL 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 953 KELDDIKEAH-QITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHA------------------------ 1007
Cdd:COG4717 344 DRIEELQELLrEAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQElkeeleeleeqleellgeleelle 423
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 555289992 1008 --------------KAKLVRLNEELAAKKREIQDLSKTVERLQKDRR 1040
Cdd:COG4717 424 aldeeeleeeleelEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
647-1290 |
5.81e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 647 ENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNftdllaELRMAQKEKDSll 726
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD------ELKKAEEKKKA-- 1292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 727 EDIKRLKQDKQAlevdfEKMKKERDQAKDqiAYVTGEKLYEIKILEETHKQEISRLQKRLQwYAENQELLDKDALRLREA 806
Cdd:PTZ00121 1293 DEAKKAEEKKKA-----DEAKKKAEEAKK--ADEAKKKAEEAKKKADAAKKKAEEAKKAAE-AAKAEAEAAADEAEAAEE 1364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 807 NEEIEKLKLEIEKLKAEsgnpSIRQKIRLKDKAADAKKiqDLERQVKEMEGILKRRypnslpalilAASAAGDTVDKNTV 886
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKAD----AAKKKAEEKKKADEAKK--KAEEDKKKADELKKAA----------AAKKKADEAKKKAE 1428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 887 EFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALE--KELDDIKEAHQI 964
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEakKKADEAKKAAEA 1508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 965 TVRNLEAEIDVLKHQNAELdvkknDKDDEDFQSIEFQVEQAHAKAKLVRLNEELaaKKREIQDLSKTVERLQKDRRMMLS 1044
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEA-----KKAEEAKKADEAKKAEEKKKADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALR 1581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1045 N-QNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYqphtftdshvSEVLQENYRLKNELEGLISEKNELKMKSEA 1123
Cdd:PTZ00121 1582 KaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK----------AEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1124 VmnqfensmRRVKEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVV 1203
Cdd:PTZ00121 1652 L--------KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1204 SEVREEILQKEITKLLEELREAKEnhtpEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQthqVVETEQNKEVEKWKRLA 1283
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAE----EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA---VIEEELDEEDEKRRMEV 1796
|
....*..
gi 555289992 1284 QLKNREL 1290
Cdd:PTZ00121 1797 DKKIKDI 1803
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
625-1227 |
7.62e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 7.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQQENErlynQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKsrfLSQVVEDSEPTR 704
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEKELEEVLREINEISSELPELREELEK---LEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 705 NqnftdllaELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVT-----GEKLYEIKILEETHKQEI 779
Cdd:PRK03918 238 E--------EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelkekAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 780 SRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKaesgnpsiRQKIRLKDkaaDAKKIQDLERQVKEMEGIL 859
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE--------KRLEELEE---RHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 860 KRRYPNS---LPALILAASAAgdtvdKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK-----MKIQYEQRLEQ 931
Cdd:PRK03918 379 KRLTGLTpekLEKELEELEKA-----KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHRKEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 932 QEQLLAcklnqhDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSiEFQVEQAHAKAKL 1011
Cdd:PRK03918 454 LEEYTA------ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLK-KYNLEELEKKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1012 VR-LNEELAAKKREIQDLSKTVERLQ--KDRRMMLSNQNSKGREEmsakraKKDVLHSSKGNANSFPGTLDSKLYQPHTF 1088
Cdd:PRK03918 527 YEkLKEKLIKLKGEIKSLKKELEKLEelKKKLAELEKKLDELEEE------LAELLKELEELGFESVEELEERLKELEPF 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1089 TDSHVsEVLQENYRLKNELEGLISEKNELKmKSEAVMNQFENSMRRVKEDTaahiaslkashqREIEKLLCQNAVENSSS 1168
Cdd:PRK03918 601 YNEYL-ELKDAEKELEREEKELKKLEEELD-KAFEELAETEKRLEELRKEL------------EELEKKYSEEEYEELRE 666
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 555289992 1169 KVAELNRKIATQEvlirhfqSQVNELQSKQESLvvsevreeilQKEITKLLEELREAKE 1227
Cdd:PRK03918 667 EYLELSRELAGLR-------AELEELEKRREEI----------KKTLEKLKEELEEREK 708
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
713-1291 |
1.21e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 713 AELRMAQKEKDSLLEDIKRLKQDKQALEVdfeKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRlqkRLQWYAEN 792
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEARKAEDA---RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK---KAEAARKA 1184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 793 QELLDKDALRLREANEEIEKL-KLEIEKLKAESGNPSIRQKIRLKDKAADAKK-IQDLERQVKEMEGILKRRYPNSLPAL 870
Cdd:PTZ00121 1185 EEVRKAEELRKAEDARKAEAArKAEEERKAEEARKAEDAKKAEAVKKAEEAKKdAEEAKKAEEERNNEEIRKFEEARMAH 1264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 871 ILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSlrtmeqqfQKMKIQYEQRLEQQEqllACKLNQHDSPRIKA 950
Cdd:PTZ00121 1265 FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA--------DEAKKKAEEAKKADE---AKKKAEEAKKKADA 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 951 LEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEdfqsiEFQVEQAHAKAKLVRLNEELAAKKREIQDLSK 1030
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA-----KKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1031 TVERLQKDRRMMlSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKlyqphtftdshvSEVLQENYRLKNELEGL 1110
Cdd:PTZ00121 1409 ELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK------------AEEAKKKAEEAKKADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1111 iSEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIE-KLLCQNAVENSSSKVAELNRKiaTQEVLIRHFQS 1189
Cdd:PTZ00121 1476 -KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEeAKKADEAKKAEEAKKADEAKK--AEEKKKADELK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1190 QVNELQSKQESLVVSEVREEILQKEIT-KLLEELREAKENHTPEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQTHQV- 1267
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMAlRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEk 1632
|
570 580
....*....|....*....|....*.
gi 555289992 1268 --VETEQNKEVEKWKRLAQLKNRELE 1291
Cdd:PTZ00121 1633 kkVEQLKKKEAEEKKKAEELKKAEEE 1658
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
625-834 |
1.48e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 704
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-LEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 705 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYV----TGEKLYEIKILEETHKQEIS 780
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkySEEEYEELREEYLELSRELA 676
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 555289992 781 RLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKL-KAESGNPSIRQKIR 834
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLeKALERVEELREKVK 731
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
580-861 |
2.14e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 580 KQQEKELFKLNQDNYILQaklssfEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQ 659
Cdd:TIGR02168 694 AELEKALAELRKELEELE------EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 660 EQNKKNEE---RMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDK 736
Cdd:TIGR02168 768 ERLEEAEEelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 737 QALEVDFEKMKKERDQAKDQIAYVTgEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLR----EANEEIEK 812
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELE-SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleELREKLAQ 926
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 555289992 813 LKLEIEKLKAESGNpsIRQKIR----------LKDKAADAKKIQDLERQVKEMEGILKR 861
Cdd:TIGR02168 927 LELRLEGLEVRIDN--LQERLSeeysltleeaEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
843-1157 |
2.18e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 843 KKIQDLERQVKEMEgilkrrypnslpALILAASAAGDTVDK--NTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK 920
Cdd:TIGR02168 677 REIEELEEKIEELE------------EKIAELEKALAELRKelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 921 MKIQYEQ------RLEQQEQLLACKLNQHDSP------RIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKN 988
Cdd:TIGR02168 745 LEERIAQlskeltELEAEIEELEERLEEAEEElaeaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 989 DKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRmMLSNQNSKGREEMSAKRAKKDVLHSSK 1068
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-ALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1069 GNANSFPGTLDSKLyqpHTFTDSHVSEVLQENyRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKa 1148
Cdd:TIGR02168 904 RELESKRSELRREL---EELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE- 978
|
....*....
gi 555289992 1149 shqREIEKL 1157
Cdd:TIGR02168 979 ---NKIKEL 984
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
721-941 |
2.35e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 721 EKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK--DQIAyVTGEKLYEIKILEETHKQEISRLQ--KRLQWYAENQELL 796
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIEllEPIR-ELAERYAAARERLAELEYLRAALRlwFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 797 DKDALRLREANEEIEKLKLEIEKLKAEsgnpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLpALILAASA 876
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREE------LDELEAQIRGNGGDRLEQLEREIERLERELEERERRRA-RLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 555289992 877 AGDTVDKNTVEF--MEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLN 941
Cdd:COG4913 371 LGLPLPASAEEFaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
663-1291 |
3.14e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 663 KKNEERMFKENQSLFSEvASLKEQMHKSRFLSQVVED-SEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEV 741
Cdd:TIGR00606 451 KKQEELKFVIKELQQLE-GSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 742 DFEKMKKERDQAKDQIayvtgEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLK 821
Cdd:TIGR00606 530 HTTTRTQMEMLTKDKM-----DKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLE 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 822 AESGN------PSIRQKIRLKDKAADAKKIQ----DLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEK 891
Cdd:TIGR00606 605 QNKNHinneleSKEEQLSSYEDKLFDVCGSQdeesDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQ 684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 892 RIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAckLNQHDSPRIKALEKELDDIKEAHQITVRNLEA 971
Cdd:TIGR00606 685 RVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG--LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR 762
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 972 EIDVLKHQNAELD-VKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQK---DRRMMLSNQN 1047
Cdd:TIGR00606 763 LKNDIEEQETLLGtIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQekqEKQHELDTVV 842
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1048 SKGREEMSAKRAKKDVLHSSKGNANSFPG---TLDSKLYQPHTFTD------SHVSEVLQENYRLKNELEGLISEKNELK 1118
Cdd:TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSeklQIGTNLQRRQQFEEqlvelsTEVQSLIREIKDAKEQDSPLETFLEKDQ 922
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1119 MKSEAVMNQFENSMRRVKEDTAAHIASLKASH--QREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQS 1196
Cdd:TIGR00606 923 QEKEELISSKETSNKKAQDKVNDIKEKVKNIHgyMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRL 1002
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1197 KQESLVVSEVREEILQKEIT--KLLEELREAKEnhtpEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQTHQVVETEQNK 1274
Cdd:TIGR00606 1003 MRQDIDTQKIQERWLQDNLTlrKRENELKEVEE----ELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQK 1078
|
650
....*....|....*..
gi 555289992 1275 EVEKWKRLAQLKNRELE 1291
Cdd:TIGR00606 1079 GYEKEIKHFKKELREPQ 1095
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
619-813 |
4.58e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 619 ADPVTG----EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQnkKNEERMFKENQSLFSEVASLKEQMH-KSRFL 693
Cdd:COG4913 600 SRYVLGfdnrAKLAALEAELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSWDEIDVASAEREIAeLEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 694 SQVVEDseptrNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQI-AYVTGEKLYEIKILE 772
Cdd:COG4913 678 ERLDAS-----SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLE 752
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 555289992 773 ETHKQEI-SRLQKRL-QWYAENQELLDKdalRLREANEEIEKL 813
Cdd:COG4913 753 ERFAAALgDAVERELrENLEERIDALRA---RLNRAEEELERA 792
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
625-786 |
5.15e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkenqslfsEVASLKEQMHKSRFLSQVVEDseptr 704
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL-----------EIEEVEARIKKYEEQLGNVRN----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 705 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE---KLYEIKILEETHKQEISR 781
Cdd:COG1579 88 NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEldeELAELEAELEELEAEREE 167
|
....*
gi 555289992 782 LQKRL 786
Cdd:COG1579 168 LAAKI 172
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
619-828 |
5.21e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 619 ADP---VTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERM-------------FKENQSLFSEVA- 681
Cdd:COG3883 14 ADPqiqAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdklqaeiaeaeaeIEERREELGERAr 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 682 SLKEQMHKSRFLSQVVEdseptrNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVt 761
Cdd:COG3883 94 ALYRSGGSVSYLDVLLG------SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL- 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 555289992 762 geklyeikileETHKQEISRLQkrlqwyAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPS 828
Cdd:COG3883 167 -----------EAAKAELEAQQ------AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
719-1306 |
6.45e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 6.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 719 QKEKDSLLE-DIKRLKQDKQALEVDfeKMKKERDQAKDQIAYVTGEKLYEIKILEETH--KQEISRLQKRLQWYAENQEL 795
Cdd:PRK03918 134 QGEIDAILEsDESREKVVRQILGLD--DYENAYKNLGEVIKEIKRRIERLEKFIKRTEniEELIKEKEKELEEVLREINE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 796 LDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGIL-----KRRYPNSLPAL 870
Cdd:PRK03918 212 ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeleeKVKELKELKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 871 ILAASAAGDTVDKNTVEfmEKRIKKLEADLEGKDEDAKKSLRTMEQQfqkmkiqyEQRLEQQEQllacklnqhdspRIKA 950
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDE--LREIEKRLSRLEEEINGIEERIKELEEK--------EERLEELKK------------KLKE 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 951 LEKELDDIKEAHQI--TVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQahakaKLVRLNEELAAKKREIQDL 1028
Cdd:PRK03918 350 LEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE-----EISKITARIGELKKEIKEL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1029 SKTVERLQKDRRM------MLSNQNSKG-----REEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHvsEVL 1097
Cdd:PRK03918 425 KKAIEELKKAKGKcpvcgrELTEEHRKElleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELA 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1098 QENYRLKNELEGL----ISEKNELKMKSEAVMNQFENSMRRVKEDtaahiasLKASHQREIEKLLCQNAVENSSSKVAEL 1173
Cdd:PRK03918 503 EQLKELEEKLKKYnleeLEKKAEEYEKLKEKLIKLKGEIKSLKKE-------LEKLEELKKKLAELEKKLDELEEELAEL 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1174 NRKIATQEV-LIRHFQSQVNELQS---KQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEMR 1249
Cdd:PRK03918 576 LKELEELGFeSVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 555289992 1250 HAQREQelqqiiqqthqvvETEQNKEVEKWKRLAQLKNR--ELEKFRTELDSILDVLRE 1306
Cdd:PRK03918 656 YSEEEY-------------EELREEYLELSRELAGLRAEleELEKRREEIKKTLEKLKE 701
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
662-1003 |
1.36e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.92 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 662 NKKNEERMFKENQSLFSEVASLKEQMHKSR---------FLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRL 732
Cdd:PLN03229 420 NMKKREAVKTPVRELEGEVEKLKEQILKAKessskpselALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 733 KQDK---QALEVDFEKMKKERDQAKDQIAYVTGEKlYEIKILEETHKqeisrlqkrlqwyaenqelldkdALRLREANEE 809
Cdd:PLN03229 500 SQDQlmhPVLMEKIEKLKDEFNKRLSRAPNYLSLK-YKLDMLNEFSR-----------------------AKALSEKKSK 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 810 IEKLKLEI-EKLKAESGNPSIRQKIR-LKDKAADAK--KIQDL--------ERQVKEMEGILKRRYPNSLPALILAASAA 877
Cdd:PLN03229 556 AEKLKAEInKKFKEVMDRPEIKEKMEaLKAEVASSGasSGDELdddlkekvEKMKKEIELELAGVLKSMGLEVIGVTKKN 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 878 GDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSlRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELD- 956
Cdd:PLN03229 636 KDTAEQTPPPNLQEKIESLNEEINKKIERVIRS-SDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNs 714
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 555289992 957 -DIKEAHQitvrNLEAEIDVLKHQNAELD--VKKNDKDDEDFQSIEFQVE 1003
Cdd:PLN03229 715 sELKEKFE----ELEAELAAARETAAESNgsLKNDDDKEEDSKEDGSRVE 760
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
522-999 |
1.38e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 522 QTDSLGYCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELENKLEELKKQQEK-ELFKLNQDNYILQA-K 599
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKaEAAEKKKEEAKKKAdA 1382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 600 LSSFEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQgyQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSE 679
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK--KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 680 VASLK-EQMHKSRFLSQVVE-----DSEPTRNQNFTDLLAELRMAQKEKDSlLEDIKRLKQDKQALEVDFEKMKKERDQA 753
Cdd:PTZ00121 1461 EAKKKaEEAKKADEAKKKAEeakkaDEAKKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 754 KDQiayVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANE----EIEKLKLEIEKLKAESGNPSI 829
Cdd:PTZ00121 1540 KKA---EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKMKAEEAKKAE 1616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 830 RQKIR---LKDKAADAKKIQDL----ERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEG 902
Cdd:PTZ00121 1617 EAKIKaeeLKKAEEEKKKVEQLkkkeAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 903 KDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLL----ACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKH 978
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIkaeeAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
490 500
....*....|....*....|.
gi 555289992 979 QNAELDVKKNDKDDEDFQSIE 999
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMEVD 1797
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
625-1073 |
1.86e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 704
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 705 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDqiayvtgeklyeikILEETHKQEISrlqk 784
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA--------------LLEAGKCPECG---- 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 785 rlqwyaenQELLDK-DALRLREANEEIEKLKLEIEKLKAESGnpSIRQKI-RLKDKAADAKKIQDLERQVKEMEGILKRR 862
Cdd:PRK02224 459 --------QPVEGSpHVETIEEDRERVEELEAELEDLEEEVE--EVEERLeRAEDLVEAEDRIERLEERREDLEELIAER 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 863 ypnslpalilaasAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKkslrtmeqqfqkmkiqyEQRLEQQEQLlacklnq 942
Cdd:PRK02224 529 -------------RETIEEKRERAEELRERAAELEAEAEEKREAAA-----------------EAEEEAEEAR------- 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 943 hdsPRIKALEKELDDIKEAHQI--TVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSiefqveqahakaklvrlNEELAA 1020
Cdd:PRK02224 572 ---EEVAELNSKLAELKERIESleRIRTLLAAIADAEDEIERLREKREALAELNDER-----------------RERLAE 631
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 555289992 1021 KKREIQDLSKT-----VERLQKDRRMMLSNQnSKGREEMSAKRAKKDVLHSSKGNANS 1073
Cdd:PRK02224 632 KRERKRELEAEfdearIEEAREDKERAEEYL-EQVEEKLDELREERDDLQAEIGAVEN 688
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
520-1137 |
2.06e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 520 QFQTDSLGYCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKekelenkleelkkqqEKELFKLNQDNYILQAK 599
Cdd:PRK03918 134 QGEIDAILESDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERL---------------EKFIKRTENIEELIKEK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 600 LSSFEETNKKQRWLhfgEAADPVTGEKLKQIQKEIQEQETL---LQGYQQENERLYNQVKDLQEQNKKNEERmfkenqsl 676
Cdd:PRK03918 199 EKELEEVLREINEI---SSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEKIRELEER-------- 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 677 fsevasLKEQMHKSRFLSQVVEDSEptrnqnftdllaELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQ 756
Cdd:PRK03918 268 ------IEELKKEIEELEEKVKELK------------ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 757 IAYVTG--EKLYEIKILEETHKQEISRLQKRLQWYAENQELLD-KDALRLREANEEIEKLKLEIEKLkaESGNPSIRQKI 833
Cdd:PRK03918 330 IKELEEkeERLEELKKKLKELEKRLEELEERHELYEEAKAKKEeLERLKKRLTGLTPEKLEKELEEL--EKAKEEIEEEI 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 834 R-LKDKAADAK-KIQDLERQVKEMEGIlKRRYPnsLPALILAASAAGDTVDKNTVEFmeKRIKKLEADLEGKDEDAKKSL 911
Cdd:PRK03918 408 SkITARIGELKkEIKELKKAIEELKKA-KGKCP--VCGRELTEEHRKELLEEYTAEL--KRIEKELKEIEEKERKLRKEL 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 912 RTMEQQFQKMK--IQYEQRLEQQEQLLAcKLNQHDSPRIKALEKELDDIKEahqiTVRNLEAEIDVLKHQNAELDVKKND 989
Cdd:PRK03918 483 RELEKVLKKESelIKLKELAEQLKELEE-KLKKYNLEELEKKAEEYEKLKE----KLIKLKGEIKSLKKELEKLEELKKK 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 990 KddedfqsIEFQVEQAHAKAKLVRLNEELAAKKRE-IQDLSKTVERLQKDRRMMLSNQNSKGREEMSAKRAKK------- 1061
Cdd:PRK03918 558 L-------AELEKKLDELEEELAELLKELEELGFEsVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKleeeldk 630
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 555289992 1062 --DVLHSSKGNANSFPGTLDSKLYQphtFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKE 1137
Cdd:PRK03918 631 afEELAETEKRLEELRKELEELEKK---YSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
596-1185 |
2.27e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 596 LQAKLSSFEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQqenerlyNQVKDLQEQNKKNEERMFK--EN 673
Cdd:TIGR00606 562 LTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN-------NELESKEEQLSSYEDKLFDvcGS 634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 674 QSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNFTDLLAE--------LRMAQKEKD-----SLLEDIKRLKQDKQ-AL 739
Cdd:TIGR00606 635 QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEnqsccpvcQRVFQTEAElqefiSDLQSKLRLAPDKLkST 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 740 EVDFEKMKKERDqakdqiayvtgeklyEIKILEETHKQEISRLQKRLQWYAEnqelldkdalRLREANEEIEKLKLEIEK 819
Cdd:TIGR00606 715 ESELKKKEKRRD---------------EMLGLAPGRQSIIDLKEKEIPELRN----------KLQKVNRDIQRLKNDIEE 769
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 820 LKAESGNPSIRQKIRlKDKAADAKKIQDLERQVKEMEgilkRRYPNslpaliLAASAAGDTVDKNTVEFMEKRikklead 899
Cdd:TIGR00606 770 QETLLGTIMPEEESA-KVCLTDVTIMERFQMELKDVE----RKIAQ------QAAKLQGSDLDRTVQQVNQEK------- 831
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 900 legkdEDAKKSLRTMEQQFQKMKIQYEQRlEQQEQLLACKLNQHDSPRIK-----ALEKELDDIKEAHQITVRNLEAEID 974
Cdd:TIGR00606 832 -----QEKQHELDTVVSKIELNRKLIQDQ-QEQIQHLKSKTNELKSEKLQigtnlQRRQQFEEQLVELSTEVQSLIREIK 905
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 975 VLKHQNAELDVKKNDKDDEDFQSIEFQ-VEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREE 1053
Cdd:TIGR00606 906 DAKEQDSPLETFLEKDQQEKEELISSKeTSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQ 985
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1054 MS-AKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEavMNQFENSM 1132
Cdd:TIGR00606 986 LEeCEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQE--HQKLEENI 1063
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 555289992 1133 RRVKEDTAAHIASLKASHQREI--EKLLCQNAVENSSSKVAELNRKIATQEVLIR 1185
Cdd:TIGR00606 1064 DLIKRNHVLALGRQKGYEKEIKhfKKELREPQFRDAEEKYREMMIVMRTTELVNK 1118
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
710-822 |
2.30e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 710 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEvdfEKMKKERDQAKDQIayvtgEKLYEIKILEEthkqEISRLQKRLqwy 789
Cdd:COG2433 417 RLEEQVERLEAEVEELEAELEEKDERIERLE---RELSEARSEERREI-----RKDREISRLDR----EIERLEREL--- 481
|
90 100 110
....*....|....*....|....*....|...
gi 555289992 790 aenqelldkdalrlREANEEIEKLKLEIEKLKA 822
Cdd:COG2433 482 --------------EEERERIEELKRKLERLKE 500
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
557-1222 |
2.39e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 557 IEQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEET-------------------NKKQRWLHFGE 617
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMErdamadirrresqsqedlrNQLQNTVHELE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 618 AADPVTGEKLK-------QIQKEIQEQETLLQG----------------YQQEN-------------------------- 648
Cdd:pfam15921 156 AAKCLKEDMLEdsntqieQLRKMMLSHEGVLQEirsilvdfeeasgkkiYEHDSmstmhfrslgsaiskilreldteisy 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 649 --ERLY---NQVKDLQEQNKKNEERMFKENQSLFS--------EVASLKEQMHKSR-----FLSQVVEDSEPTRNQN--F 708
Cdd:pfam15921 236 lkGRIFpveDQLEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARsqansIQSQLEIIQEQARNQNsmY 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 709 TDLLAELRMAQKEKDSLLEDIKRLKQDK-QALEVDFEKMKKERDQA---KDQIAYVTGEKLYEI-KILEETHKQE----I 779
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEArteRDQFSQESGNLDDQLqKLLADLHKREkelsL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 780 SRLQKRLQWYAENQELLDKDALR--LREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEG 857
Cdd:pfam15921 396 EKEQNKRLWDRDTGNSITIDHLRreLDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 858 ILkRRYPNSLpalilaasaagdTVDKNTVEFMEKRIKKLEADLEGKDedakKSLRTMEQQFQKMKIQYEQRLEQqeqlla 937
Cdd:pfam15921 476 ML-RKVVEEL------------TAKKMTLESSERTVSDLTASLQEKE----RAIEATNAEITKLRSRVDLKLQE------ 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 938 cklnqhdsprIKALEKELDDIkeahqitvRNLEAEIDVLKHQNAELDvkkndkddedfQSIEFQVEQAHAKAKLVRLNEE 1017
Cdd:pfam15921 533 ----------LQHLKNEGDHL--------RNVQTECEALKLQMAEKD-----------KVIEILRQQIENMTQLVGQHGR 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1018 LAAKkreIQDLSKTVERLQKDRRMMLsnqnskgrEEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVL 1097
Cdd:pfam15921 584 TAGA---MQVEKAQLEKEINDRRLEL--------QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1098 QENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKaSHQREIEK----LLCQNAVENSSSKVAEL 1173
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLK-SAQSELEQtrntLKSMEGSDGHAMKVAMG 731
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 555289992 1174 NRKIATQEvlirhfQSQVNELQSK----QESLVVSEVREEILQKEITKLLEEL 1222
Cdd:pfam15921 732 MQKQITAK------RGQIDALQSKiqflEEAMTNANKEKHFLKEEKNKLSQEL 778
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
713-823 |
2.43e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 713 AELRMAQKEKDSLLEDIKR----LKQDKQaLEVDfEKMKKERDQAKDQIAyvtgEKLYEIKILEETHKQEISRLQKRLQW 788
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKeaeaIKKEAL-LEAK-EEIHKLRNEFEKELR----ERRNELQKLEKRLLQKEENLDRKLEL 104
|
90 100 110
....*....|....*....|....*....|....*
gi 555289992 789 YAENQELLDKDALRLREANEEIEKLKLEIEKLKAE 823
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
625-861 |
2.54e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 625 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNeermFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 704
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY----KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 705 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQK 784
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 555289992 785 RLQWYAENQELLDKdalrLREANEEIEKLKLEIEKLKAEsgnpsirqkirlkdKAADAKKIQDLERQVKEMEGILKR 861
Cdd:TIGR04523 498 LKKLNEEKKELEEK----VKDLTKKISSLKEKIEKLESE--------------KKEKESKISDLEDELNKDDFELKK 556
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
634-856 |
3.89e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 634 IQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLfSEVASLKEQMHKSRFLSQVVEDSEPTRNqnftdlLA 713
Cdd:pfam17380 377 MRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQK-VEMEQIRAEQEEARQREVRRLEEERARE------ME 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 714 ELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIK--ILEETHKQEIsrLQKRLQwyaE 791
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKqaMIEEERKRKL--LEKEME---E 524
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 555289992 792 NQELLDKDALRlREANEEIEKlklEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEME 856
Cdd:pfam17380 525 RQKAIYEEERR-REAEEERRK---QQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESE 585
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
710-861 |
4.35e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 710 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyvTGEKlyEIKILEETHKQEISRLQKR---- 785
Cdd:COG3883 27 ELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA--EAEA--EIEERREELGERARALYRSggsv 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 786 -----------LQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNpSIRQKIRLKDKAADAKKiqDLERQVKE 854
Cdd:COG3883 103 syldvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEA-KLAELEALKAELEAAKA--ELEAQQAE 179
|
....*..
gi 555289992 855 MEGILKR 861
Cdd:COG3883 180 QEALLAQ 186
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
624-1231 |
5.64e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 624 GEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFK-----ENQSLFSEVASLKEQMHKSRFLSQVV- 697
Cdd:TIGR00606 318 ERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRArdsliQSLATRLELDGFERGPFSERQIKNFHt 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 698 ------EDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQdkqALEVDFEKMKKERDQAKDqiayvtgeKLYEIKIL 771
Cdd:TIGR00606 398 lvierqEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGR---TIELKKEILEKKQEELKF--------VIKELQQL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 772 EETHKQEISRLQKRLQWYAEnqelldkdaLRLREANEEIEKLKLEIEKLKAESGNpsirqkiRLKDKAADAKKIQDLERQ 851
Cdd:TIGR00606 467 EGSSDRILELDQELRKAERE---------LSKAEKNSLTETLKKEVKSLQNEKAD-------LDRKLRKLDQEMEQLNHH 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 852 ---VKEMEGILKRR-------YPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQqfqkM 921
Cdd:TIGR00606 531 tttRTQMEMLTKDKmdkdeqiRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ----N 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 922 KIQYEQRLEQ-QEQLLACKLNQHDSPRIKALEKELDDIKEahqitvrnleaEIDVLKHQNAELDVKKNDKDdedfqsiEF 1000
Cdd:TIGR00606 607 KNHINNELESkEEQLSSYEDKLFDVCGSQDEESDLERLKE-----------EIEKSSKQRAMLAGATAVYS-------QF 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1001 QVEQAHAKAKLVRLNEELAAKKREIQDLSKtveRLQKDRRMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANsfpgTLDS 1080
Cdd:TIGR00606 669 ITQLTDENQSCCPVCQRVFQTEAELQEFIS---DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS----IIDL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1081 KLYQPHTFTDShVSEVLQENYRLKNELE------GLISEKNELK---MKSEAVMNQFENSMRRVKEDTAAHIASLKAS-- 1149
Cdd:TIGR00606 742 KEKEIPELRNK-LQKVNRDIQRLKNDIEeqetllGTIMPEEESAkvcLTDVTIMERFQMELKDVERKIAQQAAKLQGSdl 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1150 ----HQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVVSEVRE-------EILQKEITKL 1218
Cdd:TIGR00606 821 drtvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRqqfeeqlVELSTEVQSL 900
|
650
....*....|...
gi 555289992 1219 LEELREAKENHTP 1231
Cdd:TIGR00606 901 IREIKDAKEQDSP 913
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
740-1296 |
7.14e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 740 EVDFEKMKKERDQAkdqiAYVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDK-----DALRLREANEEIEKLK 814
Cdd:PTZ00121 1078 DFDFDAKEDNRADE----ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEarkaeDARKAEEARKAEDAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 815 LEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLER--QVKEMEGILK----RRYPNSLPalILAASAAGDTVDKNTVEF 888
Cdd:PTZ00121 1154 VEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKaeELRKAEDARKaeaaRKAEEERK--AEEARKAEDAKKAEAVKK 1231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 889 MEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRN 968
Cdd:PTZ00121 1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 969 LEAeidvlkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNS 1048
Cdd:PTZ00121 1312 EEA-------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1049 KGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKlyqphtfTDSHVSEVLQENYRLKNELEGLISEK---NELKMKSEAVm 1125
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAK-------KKADEAKKKAEEKKKADEAKKKAEEAkkaDEAKKKAEEA- 1456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1126 NQFENSMRRVKEDTAAHIASLKASHQREIEKLlcQNAVENSSSKVAELNR----KIATQEVLIRHFQSQVNELQSKQESL 1201
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEA--KKKAEEAKKKADEAKKaaeaKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 1202 VVSEVR--------EEILQKEITKLLEELREAKENHTPEMKHFVGLeKKIKQMEMRHAQREQELQQIIQQTHQVVETEQN 1273
Cdd:PTZ00121 1535 KADEAKkaeekkkaDELKKAEELKKAEEKKKAEEAKKAEEDKNMAL-RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
570 580
....*....|....*....|...
gi 555289992 1274 KEVEKWKRLAQLKNRELEKFRTE 1296
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVE 1636
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
778-1005 |
9.47e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 778 EISRLQKRLQwyaENQELLDKDALRLREANEEIEKLKLEIEKLKAEsgnpsirqKIRLKDKAADAKK-IQDLERQVKEME 856
Cdd:COG3883 17 QIQAKQKELS---ELQAELEAAQAELDALQAELEELNEEYNELQAE--------LEALQAEIDKLQAeIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555289992 857 GILKRR--------YPNSLPALILAASAAGDTVDKntVEFMEKrikkleadLEGKDEDAKKSLRTMEQQFQKMKIQYEQR 928
Cdd:COG3883 86 EELGERaralyrsgGSVSYLDVLLGSESFSDFLDR--LSALSK--------IADADADLLEELKADKAELEAKKAELEAK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 555289992 929 LEQQEQLLAcklnqhdspRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQA 1005
Cdd:COG3883 156 LAELEALKA---------ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| |
