NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|557878663|ref|NP_001273610|]
View 

nucleoplasmin-2 isoform 2 [Homo sapiens]

Protein Classification

nucleoplasmin-like domain-containing protein( domain architecture ID 10503565)

nucleoplasmin-like domain-containing protein similar to Homo sapiens nucleoplasmin-2 and nucleoplasmin-3

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 18-121 1.48e-47

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


:

Pssm-ID: 460792  Cd Length: 102  Bit Score: 148.56  E-value: 1.48e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557878663   18 LWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEIlpPANQEDKKMQPVTIASLQASVLPMVSMVGVQ 97
Cdd:pfam03066   1 LWGCELKKEKKTVTFDVEEDEDCEHQLSLKTICLGAKAKDELNVVEV--EAMNYKKKPIKVPIASLKVSVLPMVSLDGLE 78

                          90       100
                  ....*....|....*....|....
gi 557878663   98 LSPPVTFQLRAGSGPVFLSGQERY 121
Cdd:pfam03066  79 PTPPVTFRLKSGSGPVHISGQHLV 102
 
Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 18-121 1.48e-47

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


Pssm-ID: 460792  Cd Length: 102  Bit Score: 148.56  E-value: 1.48e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557878663   18 LWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEIlpPANQEDKKMQPVTIASLQASVLPMVSMVGVQ 97
Cdd:pfam03066   1 LWGCELKKEKKTVTFDVEEDEDCEHQLSLKTICLGAKAKDELNVVEV--EAMNYKKKPIKVPIASLKVSVLPMVSLDGLE 78

                          90       100
                  ....*....|....*....|....
gi 557878663   98 LSPPVTFQLRAGSGPVFLSGQERY 121
Cdd:pfam03066  79 PTPPVTFRLKSGSGPVHISGQHLV 102
PLN02992 PLN02992
coniferyl-alcohol glucosyltransferase
 1-42 1.93e-03

coniferyl-alcohol glucosyltransferase


Pssm-ID: 178572 [Multi-domain]  Cd Length: 481  Bit Score: 36.88  E-value: 1.93e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 557878663   1 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGkQSC 42
Cdd:PLN02992 268 ISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDG-SAC 308
 
Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 18-121 1.48e-47

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


Pssm-ID: 460792  Cd Length: 102  Bit Score: 148.56  E-value: 1.48e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 557878663   18 LWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEIlpPANQEDKKMQPVTIASLQASVLPMVSMVGVQ 97
Cdd:pfam03066   1 LWGCELKKEKKTVTFDVEEDEDCEHQLSLKTICLGAKAKDELNVVEV--EAMNYKKKPIKVPIASLKVSVLPMVSLDGLE 78

                          90       100
                  ....*....|....*....|....
gi 557878663   98 LSPPVTFQLRAGSGPVFLSGQERY 121
Cdd:pfam03066  79 PTPPVTFRLKSGSGPVHISGQHLV 102
PLN02992 PLN02992
coniferyl-alcohol glucosyltransferase
 1-42 1.93e-03

coniferyl-alcohol glucosyltransferase


Pssm-ID: 178572 [Multi-domain]  Cd Length: 481  Bit Score: 36.88  E-value: 1.93e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 557878663   1 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGkQSC 42
Cdd:PLN02992 268 ISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDG-SAC 308
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH