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Conserved domains on  [gi|566559931|ref|NP_001274456|]
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CAP-Gly domain-containing linker protein 4 isoform 1 [Homo sapiens]

Protein Classification

CAP-Gly domain-containing linker protein; CAP-Gly domain-containing protein( domain architecture ID 12790878)

CAP-Gly domain-containing linker protein functions as a cytoplasmic linker protein; CAP-Gly domain-containing protein similar to human dynactin-1 and Saccharomyces cerevisiae nuclear fusion protein BIK1; CAP-Gly domains serve as recognition domains for EEY/F-COO(-) motifs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 487-551 1.85e-32

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 119.43  E-value: 1.85e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  487 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRV 551
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 285-349 1.43e-31

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 117.12  E-value: 1.43e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKI 349
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 626-690 4.03e-29

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 110.18  E-value: 4.03e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  626 GSQVLlTSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRV 690
Cdd:pfam01302   2 GDRVE-VPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
84-225 8.79e-19

Ankyrin repeat [Signal transduction mechanisms];


:

Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 87.32  E-value: 8.79e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  84 NIDIIgNEILKRGCNVNDRDGLtDMTLLHYtcksgAHGIGDVEtAVKFatqLIDLGADISLRSRWtNMNALHYAAYFDVP 163
Cdd:COG0666   99 DLEIV-KLLLEAGADVNARDKD-GETPLHL-----AAYNGNLE-IVKL---LLEAGADVNAQDND-GNTPLHLAAANGNL 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 566559931 164 ELIRVILKtsKPKDVDATcsDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGQIPAD 225
Cdd:COG0666  167 EIVKLLLE--AGADVNAR--DNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALD 224
 
Name Accession Description Interval E-value
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 487-551 1.85e-32

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 119.43  E-value: 1.85e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  487 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRV 551
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 285-349 1.43e-31

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 117.12  E-value: 1.43e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKI 349
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 626-690 4.03e-29

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 110.18  E-value: 4.03e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  626 GSQVLlTSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRV 690
Cdd:pfam01302   2 GDRVE-VPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 285-350 3.29e-28

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 107.67  E-value: 3.29e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 566559931   285 LGDRV-VIAGQKVGTLRFCGTTEFASGQWAGIELDEPE-GKNNGSVGKVQYFKCAPKYGIFAPLSKIS 350
Cdd:smart01052   1 VGDRVeVGGGGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 487-552 4.17e-27

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 104.59  E-value: 4.17e-27
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 566559931   487 LGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPH-GKNDGSVGGVQYFSCSPRYGIFAPPSRVQ 552
Cdd:smart01052   1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 626-691 8.09e-27

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 103.43  E-value: 8.09e-27
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 566559931   626 GSQVLLTSSNEMGTVRYVGPTDFASGIWLGLELR-SAKGKNDGSVGDKRYFTCKPNHGVLVRPSRVT 691
Cdd:smart01052   2 GDRVEVGGGGRRGTVRYVGPTPFAPGVWVGVELDePLRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
84-225 8.79e-19

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 87.32  E-value: 8.79e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  84 NIDIIgNEILKRGCNVNDRDGLtDMTLLHYtcksgAHGIGDVEtAVKFatqLIDLGADISLRSRWtNMNALHYAAYFDVP 163
Cdd:COG0666   99 DLEIV-KLLLEAGADVNARDKD-GETPLHL-----AAYNGNLE-IVKL---LLEAGADVNAQDND-GNTPLHLAAANGNL 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 566559931 164 ELIRVILKtsKPKDVDATcsDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGQIPAD 225
Cdd:COG0666  167 EIVKLLLE--AGADVNAR--DNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALD 224
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 485-614 8.64e-18

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 87.82  E-value: 8.64e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931 485 LRLGERVLVvGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPP--SRVQRVTDSLDTLS 562
Cdd:COG5244    4 LSVNDRVLL-GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPddDSLLNGNAAYEKIK 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 566559931 563 EISSNKQNhsypgfrrSFSTTSASSQKEINRRNAFSKSKAalrRSWSSTPTA 614
Cdd:COG5244   83 GGLVCESK--------GMDKDGEIKQENHEDRIHFEESKI---RRLEETIEA 123
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 622-687 3.10e-17

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 85.89  E-value: 3.10e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 566559931 622 KLHEGSQVLLtsSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRP 687
Cdd:COG5244    3 LLSVNDRVLL--GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 283-343 4.90e-15

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 78.96  E-value: 4.90e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 566559931 283 LKLGDRVVIaGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIF 343
Cdd:COG5244    4 LSVNDRVLL-GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
Ank_2 pfam12796
Ankyrin repeats (3 copies);
111-217 1.41e-09

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 55.51  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  111 LHYTCKSGAHGIgdvetaVKFatqLIDLGADISLRSRWtNMNALHYAAYFDVPELIRVILKTskpKDVDATCSDFnfgTA 190
Cdd:pfam12796   1 LHLAAKNGNLEL------VKL---LLENGADANLQDKN-GRTALHLAAKNGHLEIVKLLLEH---ADVNLKDNGR---TA 64

                          90       100
                  ....*....|....*....|....*..
gi 566559931  191 LHIAAYNLCAGAVKCLLEQGANPAFRN 217
Cdd:pfam12796  65 LHYAARSGHLEIVKLLLEKGADINVKD 91
PHA03095 PHA03095
ankyrin-like protein; Provisional
 92-226 1.04e-07

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 55.03  E-value: 1.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  92 ILKRGCNVNDRDGLtDMTLLHYTCKSGahgIGDVETAVKFatqLIDLGADISLRSRwTNMNALHYAAYFD-VPELIRVIL 170
Cdd:PHA03095  33 LLAAGADVNFRGEY-GKTPLHLYLHYS---SEKVKDIVRL---LLEAGADVNAPER-CGFTPLHLYLYNAtTLDVIKLLI 104

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 566559931 171 KtskpKDVDATCSDFNFGTALHIAAYNLC--AGAVKCLLEQGANPAFRNDKGQIPADV 226
Cdd:PHA03095 105 K----AGADVNAKDKVGRTPLHVYLSGFNinPKVIRLLLRKGADVNALDLYGMTPLAV 158
 
Name Accession Description Interval E-value
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 487-551 1.85e-32

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 119.43  E-value: 1.85e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  487 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRV 551
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 285-349 1.43e-31

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 117.12  E-value: 1.43e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKI 349
Cdd:pfam01302   1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 626-690 4.03e-29

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 110.18  E-value: 4.03e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 566559931  626 GSQVLlTSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRV 690
Cdd:pfam01302   2 GDRVE-VPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 285-350 3.29e-28

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 107.67  E-value: 3.29e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 566559931   285 LGDRV-VIAGQKVGTLRFCGTTEFASGQWAGIELDEPE-GKNNGSVGKVQYFKCAPKYGIFAPLSKIS 350
Cdd:smart01052   1 VGDRVeVGGGGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 487-552 4.17e-27

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 104.59  E-value: 4.17e-27
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 566559931   487 LGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPH-GKNDGSVGGVQYFSCSPRYGIFAPPSRVQ 552
Cdd:smart01052   1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 626-691 8.09e-27

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 103.43  E-value: 8.09e-27
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 566559931   626 GSQVLLTSSNEMGTVRYVGPTDFASGIWLGLELR-SAKGKNDGSVGDKRYFTCKPNHGVLVRPSRVT 691
Cdd:smart01052   2 GDRVEVGGGGRRGTVRYVGPTPFAPGVWVGVELDePLRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
84-225 8.79e-19

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 87.32  E-value: 8.79e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  84 NIDIIgNEILKRGCNVNDRDGLtDMTLLHYtcksgAHGIGDVEtAVKFatqLIDLGADISLRSRWtNMNALHYAAYFDVP 163
Cdd:COG0666   99 DLEIV-KLLLEAGADVNARDKD-GETPLHL-----AAYNGNLE-IVKL---LLEAGADVNAQDND-GNTPLHLAAANGNL 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 566559931 164 ELIRVILKtsKPKDVDATcsDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGQIPAD 225
Cdd:COG0666  167 EIVKLLLE--AGADVNAR--DNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALD 224
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 485-614 8.64e-18

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 87.82  E-value: 8.64e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931 485 LRLGERVLVvGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPP--SRVQRVTDSLDTLS 562
Cdd:COG5244    4 LSVNDRVLL-GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPddDSLLNGNAAYEKIK 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 566559931 563 EISSNKQNhsypgfrrSFSTTSASSQKEINRRNAFSKSKAalrRSWSSTPTA 614
Cdd:COG5244   83 GGLVCESK--------GMDKDGEIKQENHEDRIHFEESKI---RRLEETIEA 123
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 622-687 3.10e-17

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 85.89  E-value: 3.10e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 566559931 622 KLHEGSQVLLtsSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRP 687
Cdd:COG5244    3 LLSVNDRVLL--GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 283-343 4.90e-15

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 78.96  E-value: 4.90e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 566559931 283 LKLGDRVVIaGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIF 343
Cdd:COG5244    4 LSVNDRVLL-GDKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
84-225 4.74e-14

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 73.45  E-value: 4.74e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  84 NIDIIgNEILKRGCNVNDRDGlTDMTLLHYTCKSGahgigDVEtAVKFatqLIDLGADISLRSRwTNMNALHYAAYFDVP 163
Cdd:COG0666  132 NLEIV-KLLLEAGADVNAQDN-DGNTPLHLAAANG-----NLE-IVKL---LLEAGADVNARDN-DGETPLHLAAENGHL 199

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 566559931 164 ELIRVILKtsKPKDVDATcsDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGQIPAD 225
Cdd:COG0666  200 EIVKLLLE--AGADVNAK--DNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTALL 257
Ank_2 pfam12796
Ankyrin repeats (3 copies);
111-217 1.41e-09

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 55.51  E-value: 1.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  111 LHYTCKSGAHGIgdvetaVKFatqLIDLGADISLRSRWtNMNALHYAAYFDVPELIRVILKTskpKDVDATCSDFnfgTA 190
Cdd:pfam12796   1 LHLAAKNGNLEL------VKL---LLENGADANLQDKN-GRTALHLAAKNGHLEIVKLLLEH---ADVNLKDNGR---TA 64

                          90       100
                  ....*....|....*....|....*..
gi 566559931  191 LHIAAYNLCAGAVKCLLEQGANPAFRN 217
Cdd:pfam12796  65 LHYAARSGHLEIVKLLLEKGADINVKD 91
PHA03095 PHA03095
ankyrin-like protein; Provisional
 92-226 1.04e-07

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 55.03  E-value: 1.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  92 ILKRGCNVNDRDGLtDMTLLHYTCKSGahgIGDVETAVKFatqLIDLGADISLRSRwTNMNALHYAAYFD-VPELIRVIL 170
Cdd:PHA03095  33 LLAAGADVNFRGEY-GKTPLHLYLHYS---SEKVKDIVRL---LLEAGADVNAPER-CGFTPLHLYLYNAtTLDVIKLLI 104

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 566559931 171 KtskpKDVDATCSDFNFGTALHIAAYNLC--AGAVKCLLEQGANPAFRNDKGQIPADV 226
Cdd:PHA03095 105 K----AGADVNAKDKVGRTPLHVYLSGFNinPKVIRLLLRKGADVNALDLYGMTPLAV 158
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
84-220 1.73e-07

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 53.42  E-value: 1.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  84 NIDIIgNEILKRGCNVNDRDGLtDMTLLHYTCKSGAHGIgdvetaVKFatqLIDLGADISLRSRWtNMNALHYAAYFDVP 163
Cdd:COG0666  165 NLEIV-KLLLEAGADVNARDND-GETPLHLAAENGHLEI------VKL---LLEAGADVNAKDND-GKTALDLAAENGNL 232

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 566559931 164 ELIRVILKTSKPKDVDatcsDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKG 220
Cdd:COG0666  233 EIVKLLLEAGADLNAK----DKDGLTALLLAAAAGAALIVKLLLLALLLLAAALLDL 285
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 92-256 4.82e-05

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 46.20  E-value: 4.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  92 ILKRGCNVNDRDGLTDMTLLHYTCKSgahgIGDVETaVKFatqLIDLGADISLrSRWTNMNALHYAAYFDVPELirVILK 171
Cdd:PHA03100  92 LLEYGANVNAPDNNGITPLLYAISKK----SNSYSI-VEY---LLDNGANVNI-KNSDGENLLHLYLESNKIDL--KILK 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931 172 T--SKPKDVDATCS--------------DFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGqipadvvpdpvDMPL 235
Cdd:PHA03100 161 LliDKGVDINAKNRvnyllsygvpinikDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG-----------DTPL 229

                        170       180
                 ....*....|....*....|.
gi 566559931 236 EMAdAAATAKEIKQMLLDAVP 256
Cdd:PHA03100 230 HIA-ILNNNKEIFKLLLNNGP 249
Ank_4 pfam13637
Ankyrin repeats (many copies);
150-207 5.78e-05

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 41.11  E-value: 5.78e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 566559931  150 NMNALHYAAYFDVPELIRVILKtsKPKDVDATCSDFNfgTALHIAAYNLCAGAVKCLL 207
Cdd:pfam13637   1 ELTALHAAAASGHLELLRLLLE--KGADINAVDGNGE--TALHFAASNGNVEVLKLLL 54
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
128-254 9.34e-04

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 41.86  E-value: 9.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931 128 AVKFATQLIDLGADISLRSRWTNMNALHYAAYFDVPELIRVILKTskpKDVDATCSDFNFGTALHIAAYNLCAGAVKCLL 207
Cdd:COG0666   31 LLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLA---AGADINAKDDGGNTLLHAAARNGDLEIVKLLL 107

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 566559931 208 EQGANPAFRNDKGQIpadvvpdpvdmPLEMAdAAATAKEIKQMLLDA 254
Cdd:COG0666  108 EAGADVNARDKDGET-----------PLHLA-AYNGNLEIVKLLLEA 142
PHA03095 PHA03095
ankyrin-like protein; Provisional
 84-224 6.81e-03

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 39.62  E-value: 6.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 566559931  84 NIDIIgNEILKRGCNVNDRDgLTDMTLLHYTCKSgahgigdVETAVKFATQLIDLGADISLRSRWTNmNALHYAAYFDVP 163
Cdd:PHA03095 166 NVELL-RLLIDAGADVYAVD-DRFRSLLHHHLQS-------FKPRARIVRELIRAGCDPAATDMLGN-TPLHSMATGSSC 235

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 566559931 164 ELIRV---ILKTSkpkDVDATcsDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGQIPA 224
Cdd:PHA03095 236 KRSLVlplLIAGI---SINAR--NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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