NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|661567387|ref|NP_001281275|]
View 

ninjurin-2 isoform 3 [Homo sapiens]

Protein Classification

ninjurin family protein( domain architecture ID 10522739)

ninjurin family protein similar to mammalian ninjurin-1 and ninjurin-2, which are homophilic cell adhesion molecules that promote axonal growth, and may play roles in nerve regeneration and in the formation and function of other tissues

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ninjurin pfam04923
Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the ...
 1-89 1.42e-25

Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues.


:

Pssm-ID: 461482  Cd Length: 102  Bit Score: 91.42  E-value: 1.42e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 661567387    1 MLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTV 80
Cdd:pfam04923  14 MLDIALLTANASQLKYVLEVGPGHKFYYFLLVLISLSIVLQVVVGILLIFIARLNINKEREQRRANRLNNVATILVFIIT 93


                  ....*....
gi 661567387   81 VINVFITAF 89
Cdd:pfam04923  94 VINVFISAF 102
 
Name Accession Description Interval E-value
Ninjurin pfam04923
Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the ...
 1-89 1.42e-25

Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues.


Pssm-ID: 461482  Cd Length: 102  Bit Score: 91.42  E-value: 1.42e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 661567387    1 MLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTV 80
Cdd:pfam04923  14 MLDIALLTANASQLKYVLEVGPGHKFYYFLLVLISLSIVLQVVVGILLIFIARLNINKEREQRRANRLNNVATILVFIIT 93


                  ....*....
gi 661567387   81 VINVFITAF 89
Cdd:pfam04923  94 VINVFISAF 102
 
Name Accession Description Interval E-value
Ninjurin pfam04923
Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the ...
 1-89 1.42e-25

Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues.


Pssm-ID: 461482  Cd Length: 102  Bit Score: 91.42  E-value: 1.42e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 661567387    1 MLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTV 80
Cdd:pfam04923  14 MLDIALLTANASQLKYVLEVGPGHKFYYFLLVLISLSIVLQVVVGILLIFIARLNINKEREQRRANRLNNVATILVFIIT 93


                  ....*....
gi 661567387   81 VINVFITAF 89
Cdd:pfam04923  94 VINVFISAF 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH