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Conserved domains on  [gi|666335623|ref|NP_001287970|]
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uncharacterized protein C1orf54 isoform c precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4634 super family cl21282
Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins ...
 1-102 4.62e-58

Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins in this family are typically between 98 and 133 amino acids in length.


The actual alignment was detected with superfamily member pfam15465:

Pssm-ID: 434736  Cd Length: 131  Bit Score: 174.67  E-value: 4.62e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666335623    1 MDVLFVAIFAVPLIL----------------------------DDFSADFTIDYSIFESEDRLNRLDKDI-TEAIETTIS 51
Cdd:pfam15465   1 MDVLFVAILAVPLILgqeyedeegleeddyyqvayyytvtpnyDDFGVNFTIDYSMFESEDRLNRLDKEVtTEAVETTIS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 666335623   52 LETARADHPKPVTVKPVTTEPQSPDLNDAVSSLRSPIPLLLSCAFVQVGMY 102
Cdd:pfam15465  81 LETERADHQKPVTVKPVTMEPQSPDLNDAVSSLQSPVSLLLSWALVQGGMY 131
 
Name Accession Description Interval E-value
DUF4634 pfam15465
Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins ...
 1-102 4.62e-58

Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins in this family are typically between 98 and 133 amino acids in length.


Pssm-ID: 434736  Cd Length: 131  Bit Score: 174.67  E-value: 4.62e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666335623    1 MDVLFVAIFAVPLIL----------------------------DDFSADFTIDYSIFESEDRLNRLDKDI-TEAIETTIS 51
Cdd:pfam15465   1 MDVLFVAILAVPLILgqeyedeegleeddyyqvayyytvtpnyDDFGVNFTIDYSMFESEDRLNRLDKEVtTEAVETTIS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 666335623   52 LETARADHPKPVTVKPVTTEPQSPDLNDAVSSLRSPIPLLLSCAFVQVGMY 102
Cdd:pfam15465  81 LETERADHQKPVTVKPVTMEPQSPDLNDAVSSLQSPVSLLLSWALVQGGMY 131
 
Name Accession Description Interval E-value
DUF4634 pfam15465
Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins ...
 1-102 4.62e-58

Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins in this family are typically between 98 and 133 amino acids in length.


Pssm-ID: 434736  Cd Length: 131  Bit Score: 174.67  E-value: 4.62e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 666335623    1 MDVLFVAIFAVPLIL----------------------------DDFSADFTIDYSIFESEDRLNRLDKDI-TEAIETTIS 51
Cdd:pfam15465   1 MDVLFVAILAVPLILgqeyedeegleeddyyqvayyytvtpnyDDFGVNFTIDYSMFESEDRLNRLDKEVtTEAVETTIS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 666335623   52 LETARADHPKPVTVKPVTTEPQSPDLNDAVSSLRSPIPLLLSCAFVQVGMY 102
Cdd:pfam15465  81 LETERADHQKPVTVKPVTMEPQSPDLNDAVSSLQSPVSLLLSWALVQGGMY 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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