|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
2.50e-29 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 111.60 E-value: 2.50e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 13 LDAEFDHFVVDMKPFVLKLPHRTERQRCALWIRKLCEPSGTgagIMGRKNRNLYAKLLLHMLKRGALEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 727352834 93 KILPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
259-891 |
4.98e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 4.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 259 YRSKQHETEetiRKLEKkVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndweKKLHNAVAEMEQEKFDLQKQHTEN 338
Cdd:COG1196 170 YKERKEEAE---RKLEA-TEENLERLEDILGELERQLEPLERQAEKAERY------RELKEELKELEAELLLLKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 339 IQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRN 418
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 419 TLHKEKDHLVNDYEQNmkllqtkyDADINLLKQEHALSASKASSMIEELEQnvcqLKQQLQESELQRKQQLRDQENKFQM 498
Cdd:COG1196 320 ELEEELAELEEELEEL--------EEELEELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 499 EKSHLKHIYEKKAHDLQSE-LDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYA 577
Cdd:COG1196 388 LLEALRAAAELAAQLEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 578 EMKEQMEKVEADLTRSKSLREKQSKEflWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIEN-LE 656
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLA 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 657 KQLRAANMEHEN----QIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELG---LLREEEKQRATREHEIVVN 729
Cdd:COG1196 546 AALQNIVVEDDEvaaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvasDLREADARYYVLGDTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 730 KLKAESEKMKIELKKTHAAEtemtlekanskLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQ 809
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGR-----------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 810 KFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASlRQELEDTISSLK 889
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEELERELERLE 773
|
..
gi 727352834 890 SQ 891
Cdd:COG1196 774 RE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
516-834 |
9.99e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 9.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 516 SELDKGKEDTQKKihkfeeaLKEKEEQLTRVTEVQR-LQAQ------QADAAL-------EEFKRQVELNSEKvYAEMKE 581
Cdd:COG1196 168 SKYKERKEEAERK-------LEATEENLERLEDILGeLERQleplerQAEKAEryrelkeELKELEAELLLLK-LRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 582 QMEKVEADLTRSKSLREKQSKEF-LWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLR 660
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 661 AANMEHENQIQEfKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKI 740
Cdd:COG1196 320 ELEEELAELEEE-LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 741 ELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 820
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
330
....*....|....
gi 727352834 821 DNDQAIKVLQDELE 834
Cdd:COG1196 479 LAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
378-697 |
1.73e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 378 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEhalsA 457
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKD----L 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 458 SKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALK 537
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-----EAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 538 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKvyAEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQ 617
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI--EELSEDIESLAAEIEELEELIEELESE-LEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 618 QIVELKL----------EHEQEKTHLLQQHNAEKDSLVRDHER------EIENLEKQLRA-ANMEHENQIQEFKKRDAQv 680
Cdd:TIGR02168 888 ALALLRSeleelseelrELESKRSELRRELEELREKLAQLELRleglevRIDNLQERLSEeYSLTLEEAEALENKIEDD- 966
|
330
....*....|....*..
gi 727352834 681 IADMEAQVHKLREELIN 697
Cdd:TIGR02168 967 EEEARRRLKRLENKIKE 983
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
131-908 |
4.28e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 4.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 131 EHKLNESWKLSSGEDNTLVQSPTDVYSREQytgKLRVRSHSLSPTHREDGQNITPKICEVYSKKSPVSLDDSDIEARLNS 210
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQ---EMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 211 WNLGLDMKTKMMEAkfHEEKLKLQQKHDADVQKILERKNNEIEELKTL-YRSKQHETEETIRKLEKKVQTLIRDCQVIre 289
Cdd:pfam15921 168 SNTQIEQLRKMMLS--HEGVLQEIRSILVDFEEASGKKIYEHDSMSTMhFRSLGSAISKILRELDTEISYLKGRIFPV-- 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 290 tkEDQIAELKKICEQSTESLNNDWEKKLHNAVAEME------QEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQtqs 363
Cdd:pfam15921 244 --EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEveitglTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ--- 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 364 tnhmIKELEARVQQLTGEAENSNLQRQKLIQEkaeLERCYQITCSELQEVKARRNTLHKEKDHLvndYEQNMKLLQtkyd 443
Cdd:pfam15921 319 ----LSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNL---DDQLQKLLA---- 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 444 adiNLLKQEHALSASKassmieelEQNvcqlkqqlqeselqrkQQLRDQENKFQMEKSHLKHIYEKKAHDLQ---SELDK 520
Cdd:pfam15921 385 ---DLHKREKELSLEK--------EQN----------------KRLWDRDTGNSITIDHLRRELDDRNMEVQrleALLKA 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 521 GKEDTQKKIHKFEEALKEKEEQLTRVTEVqrlqAQQADAALEEFKRQVE-LNSEKVYAEmkeQMEKVEADLTRSKSLREK 599
Cdd:pfam15921 438 MKSECQGQMERQMAAIQGKNESLEKVSSL----TAQLESTKEMLRKVVEeLTAKKMTLE---SSERTVSDLTASLQEKER 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 600 QSKEFLWQLEDIRQRYEQQIVELK--------LEHEQEKTHLLQQHNAEKDSLVRDHEREIENLekqlraanmeheNQIQ 671
Cdd:pfam15921 511 AIEATNAEITKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENM------------TQLV 578
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 672 EFKKRDAQVIADMEAQVhklrEELINvnsQRKQQLVELGLLREEeKQRATREHEIVVNKLKAESEKmkielkkthaaete 751
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQL----EKEIN---DRRLELQEFKILKDK-KDAKIRELEARVSDLELEKVK-------------- 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 752 mtLEKANSKLKQIEKEYTQKlakSSQIIAELQTTISSLKEENSQQQLAaERRLQDVRQKFEDEKKQLirdnDQAIKVLQD 831
Cdd:pfam15921 637 --LVNAGSERLRAVKDIKQE---RDQLLNEVKTSRNELNSLSEDYEVL-KRNFRNKSEEMETTTNKL----KMQLKSAQS 706
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 832 ELENRSNQVRCAEKKLQHK---ELESQEQITYIRQEYETKlkglmpASLRQELEDTISSLKSQVNFLQKRASILQEELTT 908
Cdd:pfam15921 707 ELEQTRNTLKSMEGSDGHAmkvAMGMQKQITAKRGQIDAL------QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELST 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
373-912 |
1.12e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 373 ARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYeQNMKLLQTKYDADINLLKQE 452
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 453 HALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyeKKAHDLQSELDKGKEDTQKKIHKF 532
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL------EELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 533 EEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIR 612
Cdd:TIGR02168 385 RSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 613 QRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDhEREIENLEKQLRAAnMEHENQIQEFKKRDAQVI---ADMEAQ 687
Cdd:TIGR02168 461 EALEelREELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKAL-LKNQSGLSGILGVLSELIsvdEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 688 VHKLREELIN--VNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK--------- 756
Cdd:TIGR02168 539 IEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrkal 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 757 ---------------ANSKLKQIEKEYT-----------------------QKLAKSSQIIAELQTTISSL--KEENSQQ 796
Cdd:TIGR02168 619 syllggvlvvddldnALELAKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRREIEELEEKIEELeeKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 797 QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYiRQEYETKLKGLMPA- 875
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEEl 777
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 727352834 876 ----SLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 912
Cdd:TIGR02168 778 aeaeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
246-835 |
1.81e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 246 ERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEME 325
Cdd:PTZ00121 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 326 QEKFDLQKQHTENIQELLEDTNVRLNKMESEY-MAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQ 404
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 405 ITCSELQEVKARRNTLhKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEElEQNVCQLKQQLQESELQ 484
Cdd:PTZ00121 1408 DELKKAAAAKKKADEA-KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKA 1485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 485 RKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKfeealKEKEEQLTRVTEVQRLqaqqadaalEEF 564
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE-----AKKADEAKKAEEKKKA---------DEL 1551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 565 KRQVELNSEKvyaEMKEQMEKVEADLTRSKSLREKqskeflwqlEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL 644
Cdd:PTZ00121 1552 KKAEELKKAE---EKKKAEEAKKAEEDKNMALRKA---------EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 645 VRDHEREIENLEKQlraaNMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREH 724
Cdd:PTZ00121 1620 IKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 725 EIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAER 802
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKeaEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
570 580 590
....*....|....*....|....*....|....
gi 727352834 803 RLQDVRQKFEDEKKQLIR-DNDQAIKVLQDELEN 835
Cdd:PTZ00121 1776 EKEAVIEEELDEEDEKRRmEVDKKIKDIFDNFAN 1809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-895 |
1.90e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 228 EEKLKLQQKHDAdVQKILERKNNEIEELktlyRSKQHETEETIRKLEKKVQTL---IRDCQVIRETKEDQIAELKKICEQ 304
Cdd:TIGR02168 246 EELKEAEEELEE-LTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALaneISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 305 STESLNNDWEKKLHNA--VAEMEQEKFDLQKQHT------ENIQELLEDTNVRLNKMESEYMAQTQ---STNHMIKELEA 373
Cdd:TIGR02168 321 LEAQLEELESKLDELAeeLAELEEKLEELKEELEsleaelEELEAELEELESRLEELEEQLETLRSkvaQLELQIASLNN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 374 RVQQLTGEAENSNLQRQKLIQEKAELERCYQI-----TCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINL 448
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEaelkeLQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 449 LKQEHALSASKAS--SMIEELEQNVCQLKQQLQESE-----LQRKQQLRDQENKFQMEK-----SHLKHI------YEKK 510
Cdd:TIGR02168 481 ERELAQLQARLDSleRLQENLEGFSEGVKALLKNQSglsgiLGVLSELISVDEGYEAAIeaalgGRLQAVvvenlnAAKK 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 511 AHDLQSELDKGK------------------EDTQKKIHKFEEALKEKEEQ-----------LTRVTEVQRLQAQQADAAL 561
Cdd:TIGR02168 561 AIAFLKQNELGRvtflpldsikgteiqgndREILKNIEGFLGVAKDLVKFdpklrkalsylLGGVLVVDDLDNALELAKK 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 562 EEFK-RQVELNSEKVYA----------------EMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQQIVELKL 624
Cdd:TIGR02168 641 LRPGyRIVTLDGDLVRPggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKA-LAELRKELEELEEELEQLRK 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 625 EHEQekthLLQQHNAEKDSLVRdHEREIENLEKQLRAANMEHENQIQEFKKRDAQvIADMEAQVHKLREELINVNSQRKQ 704
Cdd:TIGR02168 720 ELEE----LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAEAEIEELEAQIEQ 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 705 QLVELGLLREE--EKQRATREHEIVVNKL--KAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEytqkLAKSSQIIA 780
Cdd:TIGR02168 794 LKEELKALREAldELRAELTLLNEEAANLreRLESLERRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEELIE 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 781 ELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEkkqlIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITY 860
Cdd:TIGR02168 870 ELESELEALLNERASLE-EALALLRSELEELSEE----LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 727352834 861 IRQEYETKLKGLMP-----ASLRQELEDTISSLKSQVNFL 895
Cdd:TIGR02168 945 LSEEYSLTLEEAEAlenkiEDDEEEARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
337-892 |
3.56e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 3.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 337 ENIQELLEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKAR 416
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 417 RNTLHKEKDHLvndyEQNMKLLQTKydadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK-QQLRDQENK 495
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEK--------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 496 FQMEKSHLKHIYEKKAHDLQS-------------ELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE 562
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEErikeleekeerleELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 563 EFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEkthLLQQHNAEKD 642
Cdd:PRK03918 388 KLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 643 SlVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQviadmeaqvHKLREELINVNSqrkqqlvELGLLREEEKQRATR 722
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKELEE-------KLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 723 EHEIV---VNKLKAESEKMKIELKKTHA-----AETEMTLEKANSKLKQIEKEYTQKLAKSsqiIAELQTTISSLKE--E 792
Cdd:PRK03918 526 EYEKLkekLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPfyN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 793 NSQQQLAAERRLQDVRQKFEDEKKQL--IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELEsqEQITYIRQEYETKLK 870
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELdkAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--EEYLELSRELAGLRA 680
|
570 580
....*....|....*....|...
gi 727352834 871 GLMPA-SLRQELEDTISSLKSQV 892
Cdd:PRK03918 681 ELEELeKRREEIKKTLEKLKEEL 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
529-868 |
4.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 529 IHKFEEALKEKEEQLTRVTE-VQRLQAqqadaALEEFKRQV---ELNSEKV--YAEMKEQMEKVEADL--TRSKSLREKq 600
Cdd:TIGR02168 167 ISKYKERRKETERKLERTREnLDRLED-----ILNELERQLkslERQAEKAerYKELKAELRELELALlvLRLEELREE- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 601 skeflwqlediRQRYEQQIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEfkkrdaqv 680
Cdd:TIGR02168 241 -----------LEELQEELKEAEEELEELTAEL-----QELEEKLEELRLEVSELEEEIEELQKELYALANE-------- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 681 IADMEAQVHKLREELINVNSQRKQQLVELGLL--REEEKQRATREHEIVVNKLKAESEKMKIELKkthaaETEMTLEKAN 758
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELesKLDELAEELAELEEKLEELKEELESLEAELE-----ELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 759 SKLKQIEKEYTQKLAKSSQI---IAELQTTISSLKEENSQQQLAAERRLQ---DVRQKFEDEKKQLIRDNDQAIKVLQDE 832
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRERLQQeieELLKKLEEAELKELQAELEELEEELEE 451
|
330 340 350
....*....|....*....|....*....|....*.
gi 727352834 833 LENRSNQVRCAEKKLQHKELESQEQITYIRQEYETK 868
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
463-908 |
2.04e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 463 MIEELEQNVCQLKQQLQES-ELQRKQQ---------LRDQENKFQMEKSHLKHIYEKKAhdlQSELDKgKEDTQKKIHKF 532
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRES---QSQEDL-RNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 533 EEALKEKEEQL----TRVTEVQRLQAQQaDAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQL 608
Cdd:pfam15921 155 EAAKCLKEDMLedsnTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 609 EDIRQR---YEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQefkkrdaqviadme 685
Cdd:pfam15921 234 SYLKGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ-------------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 686 AQVHKLREELINVNSQRKQQLVELgllreeekqratrehEIVVNKLKAESEKMKiELKKTHAAETEMTLEKANSKLKQIE 765
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 766 KEYTQKLAKSSQIIAELQTTISSLKEEnsQQQLAAERrlqdvrqkfEDEKKQLIRDNDQAIKV--LQDELENRSNQVRCA 843
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727352834 844 EKKLQHKELESQEQITYIRQEYETKLKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 908
Cdd:pfam15921 432 EALLKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
592-858 |
2.69e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.36 E-value: 2.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 592 RSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV-RDHEREIENLEKQLraanmehENQI 670
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL-------ERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 671 QEFKKRDAQVIADME--AQVHKLRE-ELINVNSQRKQQLVELGL-------LREEEKQRATREHEIVVNKLKAESEKMKI 740
Cdd:pfam17380 355 QEERKRELERIRQEEiaMEISRMRElERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 741 ELKKTHAAETEMTLEkansKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEdEKKQLIR 820
Cdd:pfam17380 435 REVRRLEEERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE-ERKQAMI 509
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 727352834 821 DNDQAIKVLQDELENRSNQV-------RCAEKKLQHKELESQEQI 858
Cdd:pfam17380 510 EEERKRKLLEKEMEERQKAIyeeerrrEAEEERRKQQEMEERRRI 554
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
482-868 |
2.88e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 2.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 482 ELQRKQQLRDQENKFQMEKSHLKHIYEKKAhdlqSELDKGKEDTQKKihkfEEALKEKEEQLTRVTEVQRLQAQQADAAL 561
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 562 EEFKRQVELnsekvyAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEqqivELKLEHEQEKthllqqhNAEK 641
Cdd:PTZ00121 1360 EAAEEKAEA------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKK-------KADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 642 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQlvELGLLREEEKQRAT 721
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 722 REHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 801
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727352834 802 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETK 868
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
250-820 |
2.93e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.46 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 250 NEIEELKTLYRSKQH------ETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAE 323
Cdd:pfam12128 248 QEFNTLESAELRLSHlhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 324 MEQ----EKFDLQKQHTEniQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQ--------QLTGEAENSNLQRQK 391
Cdd:pfam12128 328 EDQhgafLDADIETAAAD--QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnnrDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 392 LIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEhALSASKASSMIEELEQnv 471
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEA-- 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 472 CQLKQQLQESELQRKQQLRDQEN-----------KFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHK--------- 531
Cdd:pfam12128 483 ANAEVERLQSELRQARKRRDQASealrqasrrleERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKvispellhr 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 532 ------FEEALKEKEEQLTRVT-EVQRLQAQQADAALEEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEf 604
Cdd:pfam12128 563 tdldpeVWDGSVGGELNLYGVKlDLKRIDVPEWAASEEELRERLD-KAEEALQSAREKQAAAEEQLVQANGELEKASRE- 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 605 lwqLEDIRQRYEQ---QIVELKLEHEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 681
Cdd:pfam12128 641 ---ETFARTALKNarlDLRRLFDEKQSEKDKKNKALAERKDSA----NERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 682 ADMEAQVHKLREELINvnsqrKQQLVELGLLREEEKQRAtreheivvnKLKAESEKMKIELKKTHAAETEMtlekanSKL 761
Cdd:pfam12128 714 TEKQAYWQVVEGALDA-----QLALLKAAIAARRSGAKA---------ELKALETWYKRDLASLGVDPDVI------AKL 773
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 727352834 762 KQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 820
Cdd:pfam12128 774 KREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLAR 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
359-676 |
3.49e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 359 AQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLL 438
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 439 QTKYDADINLLKQEHALSA--SKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQS 516
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEErlEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 517 ELDKgKEDTQKKIHKFEEALKEKEEQLTRVT------EVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEA-- 588
Cdd:TIGR02168 829 LERR-IAATERRLEDLEEQIEELSEDIESLAaeieelEELIEELESELEALLNERASLEEALALLRSELEELSEELREle 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 589 ----DLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAA 662
Cdd:TIGR02168 908 skrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEeeARRRLKRLENKIKELGPV 987
|
330
....*....|....
gi 727352834 663 NMEHENQIQEFKKR 676
Cdd:TIGR02168 988 NLAAIEEYEELKER 1001
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-767 |
4.71e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 228 EEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTE 307
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 308 SLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNhmiKELEARVQQLTGEAENSNL 387
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE---ELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 388 QRQKLIQEKAELERCYQITcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASkassmIEEL 467
Cdd:COG1196 402 LEELEEAEEALLERLERLE-EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE-----AALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 468 EQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVT 547
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 548 EVQRLQA----QQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELK 623
Cdd:COG1196 556 DEVAAAAieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 624 LEHEQEKTHLLQQHNAEKDsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELiNVNSQRK 703
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE-RELAEAE 713
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727352834 704 QQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKthAAETEMTLEKANSKLKQIEKE 767
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE--ELPEPPDLEELERELERLERE 775
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
512-874 |
7.68e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.20 E-value: 7.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 512 HDLQSELDKGKEDTQKKIHKFE-EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL--NSEKVYAEMKEQMEKVEA 588
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyaEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 589 DlTRSKSLREKQSKEFLWQLEDIRQryeqqIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEN 668
Cdd:pfam17380 356 E-ERKRELERIRQEEIAMEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 669 QiqEFKKRDAQVIADMEA-QVHKLREElinvNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 747
Cdd:pfam17380 430 E--EARQREVRRLEEERArEMERVRLE----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 748 AETEMTLEKANSKLKQIEKEYTQKlakssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLirdndqaik 827
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEMEERQK------AIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------- 568
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 727352834 828 vlqDELENRSNQVR-CAEKKLQHKELESQEQITYIRQEYETKLKGLMP 874
Cdd:pfam17380 569 ---EAMEREREMMRqIVESEKARAEYEATTPITTIKPIYRPRISEYQP 613
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
450-891 |
9.58e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 9.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 450 KQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKhiyEKKAHDLQSELDKGKEDTQKK- 528
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE---KAEAAEKKKEEAKKKADAAKKk 1386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 529 ---IHKFEEALKEKEEQLTRVTEVQRLQAQQADAalEEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFL 605
Cdd:PTZ00121 1387 aeeKKKADEAKKKAEEDKKKADELKKAAAAKKKA--DEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 606 WQLEDIRQRYEQQivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIAD-- 683
Cdd:PTZ00121 1464 KKAEEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADea 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 684 MEAQVHKLREELINVNSQRKQQLVElgllREEEKQR-------ATREHEIV--VNKLKAESEKMKIELKKTHAAETEMTL 754
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEELKKAEEKK----KAEEAKKaeedknmALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 755 EKANSKLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE----------RRLQDVRQKFEDEKK---QLI 819
Cdd:PTZ00121 1616 EEAKIKAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAeeakkaeedkKKAEEAKKAEEDEKKaaeALK 1695
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727352834 820 RDNDQAIKVlqDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELEDTISSLKSQ 891
Cdd:PTZ00121 1696 KEAEEAKKA--EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
216-777 |
1.31e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 216 DMKTKMMEAKFHEEklklQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKED-- 293
Cdd:PTZ00121 1306 EAKKKAEEAKKADE----AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKad 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 294 ---QIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKE 370
Cdd:PTZ00121 1382 aakKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 371 LEARVQQLTGEAEnsnlqrqklIQEKAELERCYQITCSELQEVKARRNTLHKEKDHlvNDYEQNMKLLQTKYDADiNLLK 450
Cdd:PTZ00121 1462 AKKKAEEAKKADE---------AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA--KKKADEAKKAEEAKKAD-EAKK 1529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 451 QEHALSASKASSMIEELEQNVCQLKQQLQESELQRK--QQLRDQENKFQMEK--SHLKHIYEKKAHDLQSELDKGKEDTQ 526
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 527 KKIHKFEEAlKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLW 606
Cdd:PTZ00121 1610 EEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 607 QLEDIRQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEnqiQEFKKRDAQVIAD 683
Cdd:PTZ00121 1689 KAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKE 1765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 684 MEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQ 763
Cdd:PTZ00121 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEE 1845
|
570
....*....|....
gi 727352834 764 IEKEYTQKLAKSSQ 777
Cdd:PTZ00121 1846 ADAFEKHKFNKNNE 1859
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
245-912 |
1.65e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 245 LERKNNEIEELKTLYRSKQhETEETIRKLEKKvqTLIRDcqviRETKEDQIAELKKICEQSTESLNnDWEKKLHNAVAEM 324
Cdd:TIGR02169 203 LRREREKAERYQALLKEKR-EYEGYELLKEKE--ALERQ----KEAIERQLASLEEELEKLTEEIS-ELEKRLEEIEQLL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 325 EQEkfdlqkqhTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyq 404
Cdd:TIGR02169 275 EEL--------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER--- 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 405 itcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEHALSASKASSMIEELEQNVCQLKQqLQESELQ 484
Cdd:TIGR02169 344 ----EIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREINELKRELDR-LQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 485 RKQQLRDQENKfqmekshLKHIYEKKAhdlqsELDKGKEDTQKKIHKFEEALKEKEEQLTRVtEVQRLQAQQADAALEEF 564
Cdd:TIGR02169 418 LSEELADLNAA-------IAGIEAKIN-----ELEEEKEDKALEIKKQEWKLEQLAADLSKY-EQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 565 KRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEF--LWQLEDIRQRYE-----------QQIVELKLEHEQEKT 631
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHgtVAQLGSVGERYAtaievaagnrlNNVVVEDDAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 632 HLLQQHNAEKDSL-----VRDHEREIENLEKQLR---AANM-EHENQIQE---FKKRDAQVIADMEA---QVHKLREELI 696
Cdd:TIGR02169 565 ELLKRRKAGRATFlplnkMRDERRDLSILSEDGVigfAVDLvEFDPKYEPafkYVFGDTLVVEDIEAarrLMGKYRMVTL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 697 NVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELK---------KTHAAETEMTLEKANSKLKQIEKE 767
Cdd:TIGR02169 645 EGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSslqselrriENRLDELSQELSDASRKIGEIEKE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 768 YT---QKLAKSSQIIAELQTTISSLKEE---NSQQQLAAERRLQDVRQKFEDEKKQL----IRDNDQAIKVLQDELENRS 837
Cdd:TIGR02169 725 IEqleQEEEKLKERLEELEEDLSSLEQEienVKSELKELEARIEELEEDLHKLEEALndleARLSHSRIPEIQAELSKLE 804
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727352834 838 NQVRCAEKKLQHKELESQEqITYIRQEYETKLKGLMpaSLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 912
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQ--EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-594 |
1.66e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 227 HEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKL---EKKVQTLIRDCQVIRETKEDQIAELKKICE 303
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 304 QSTEslNNDWEKKLHNAVAEMEQEKFDLQKQhTENIQELLEDTNVRLNKMESEYmaqtQSTNHMIKELEARVQQLTGEAE 383
Cdd:TIGR02168 762 EIEE--LEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 384 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQnmkllqtkydadINLLKQEHALSASKASSM 463
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS------------LEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 464 IEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQL 543
Cdd:TIGR02168 903 LRELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 727352834 544 TRVTEVQRlqaqqadAALEEFKRQvelnsEKVYAEMKEQMEkveaDLTRSK 594
Cdd:TIGR02168 982 KELGPVNL-------AAIEEYEEL-----KERYDFLTAQKE----DLTEAK 1016
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
537-757 |
1.71e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 51.75 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 537 KEKEEQLTRVTEVQRLQAQQADAALEEFKRQVelnsEKVYAEMKEQMEKVEAdltRSKSLREKQskeflwqlediRQRYE 616
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE---EEDKLLEEA-----------EKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 617 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLRE--E 694
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 727352834 695 LINVNSQRKQQL--------VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 757
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
577-909 |
2.81e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 577 AEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQQIVELKLEHEQekthLLQQHNAEKdslvrdheREIENLE 656
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENR-LDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLK--------ERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 657 KQLRAANMEHENQIQEFKKRDAqVIADMEAQVHKLREELinvnsqrkqqlvelgllreEEKQRATREHEIvvNKLKAESE 736
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEAL-------------------NDLEARLSHSRI--PEIQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 737 KMKIELKKthaaetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQttisslkeensQQQLAAERRLQDVRQKFEDEKK 816
Cdd:TIGR02169 802 KLEEEVSR---------IEARLREIEQKLNRLTLEKEYLEKEIQELQ-----------EQRIDLKEQIKSIEKEIENLNG 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 817 QlirdndqaIKVLQDELENRSNQVRCAEKklQHKELESQeqityiRQEYETKLKGLMPAslRQELEDTISSLKSQVNFLQ 896
Cdd:TIGR02169 862 K--------KEELEEELEELEAALRDLES--RLGDLKKE------RDELEAQLRELERK--IEELEAQIEKKRKRLSELK 923
|
330
....*....|...
gi 727352834 897 KRASILQEELTTY 909
Cdd:TIGR02169 924 AKLEALEEELSEI 936
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
367-898 |
4.28e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.67 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 367 MIKELEARVQQ---LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyd 443
Cdd:PRK01156 174 VIDMLRAEISNidyLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 444 adiNLLKQEHALSASKAsSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHiYEKKAHDLQSELDKGKE 523
Cdd:PRK01156 252 ---NRYESEIKTAESDL-SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 524 DtqkkIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSekvYAEMKEQMEKVEADLTRSKSLREKQSKE 603
Cdd:PRK01156 327 I----IKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS---IESLKKKIEEYSKNIERMSAFISEILKI 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 604 FLWQLEDIRQRYEQQIVELkleheQEKTHLLQQHNAEKDSLvRDHEREIENLEKQLRAANM-------EHENQIQEFKKR 676
Cdd:PRK01156 400 QEIDPDAIKKELNEINVKL-----QDISSKVSSLNQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttLGEEKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 677 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIvVNKLKAESEKMKI---ELKKTHAAETEMT 753
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNK-IESARADLEDIKIkinELKDKHDKYEEIK 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 754 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQlirdNDQAIKVLQDEL 833
Cdd:PRK01156 553 NRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEA 628
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727352834 834 ENRSNQVRCAEKKLQHKElESQEQITYIRQEYeTKLKGLMPAslRQELEDTISSLKSQVNFLQKR 898
Cdd:PRK01156 629 NNLNNKYNEIQENKILIE-KLRGKIDNYKKQI-AEIDSIIPD--LKEITSRINDIEDNLKKSRKA 689
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
555-792 |
9.85e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 9.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 555 QQADAALEEFKRqvelnsekvYAEMKEQMEKVEADLTRSKSLREKQSKefLWQLEDIRQRYEQQIVELKLEHEQEKTHLL 634
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 635 QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQ---QLVELGL 711
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 712 LREEEKQRATREHEivvnKLKAESEKMKIELKKTHAAETEM--TLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSL 789
Cdd:COG4913 374 PLPASAEEFAALRA----EAAALLEALEEELEALEEALAEAeaALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
...
gi 727352834 790 KEE 792
Cdd:COG4913 450 AEA 452
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
459-822 |
1.02e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 49.06 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 459 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELDKGKedtqkkiHKFEEALKE 538
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLLANR-------FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 539 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 611
Cdd:PRK04778 170 LEKQL--------------ENLEEEFSQFVELTESgdyvearEILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 612 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN---------MEHE----NQIQEFKKRD 677
Cdd:PRK04778 236 KAGYRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 678 AQVIADMEAQVHKLREELinvnsqrkQQLVELGLLREEEKQRAtREHEIVVNKLKAESEKMKIELKKTHAA--ETEMTLE 755
Cdd:PRK04778 316 PDFLEHAKEQNKELKEEI--------DRVKQSYTLNESELESV-RQLEKQLESLEKQYDEITERIAEQEIAysELQEELE 386
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727352834 756 KANSKLKQIEKEytqklakssqiIAELQTTISSLKEEnsqqQLAAERRLQDVRQKFEDEKKQLIRDN 822
Cdd:PRK04778 387 EILKQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSN 438
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
228-857 |
1.04e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 228 EEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTE 307
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 308 SLNNDWEKKLHNAVAEMEQEKFD---LQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAEN 384
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEeleKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 385 SNLQRQKLIQEKAELERCYQITcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMI 464
Cdd:pfam02463 417 LEDLLKEEKKEELEILEEEEES-IELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 465 EELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQL- 543
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPl 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 544 ---TRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIV 620
Cdd:pfam02463 576 garKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 621 ELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNS 700
Cdd:pfam02463 656 EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 701 QRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIA 780
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727352834 781 ELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQ 857
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
271-633 |
1.05e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 271 RKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEK--KLHNAVAEMEQEKFDLQKqhtENIQELLEDTNV 348
Cdd:PLN02939 48 KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSsdDDHNRASMQRDEAIAAID---NEQQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 349 RLNKMESEYMAQTQSTNHMIKEL-EARVQQLtGEAEnsnlqrqKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHL 427
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAEKNILLLnQARLQAL-EDLE-------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 428 VNDYEQNMKLLqtkydadiNLLKQEHALSASKASSMIEEL----EQNVcQLKQQLQESELQRKQQLRDQENKFQMEKSHl 503
Cdd:PLN02939 197 EILEEQLEKLR--------NELLIRGATEGLCVHSLSKELdvlkEENM-LLKDDIQFLKAELIEVAETEERVFKLEKER- 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 504 kHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE---EFKRQVE-----LNSEKV 575
Cdd:PLN02939 267 -SLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDqnqDLRDKVDkleasLKEANV 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727352834 576 YAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLedirQRYEQQIVEL-----KLEHEQEKTHL 633
Cdd:PLN02939 346 SKFSSYKVELLQQKLKLLEERLQASDHEIHSYI----QLYQESIKEFqdtlsKLKEESKKRSL 404
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
514-732 |
1.06e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 514 LQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtevqrlqaQQADAALEEFKRQ---VELNSE-----KVYAEMKEQMEK 585
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKEL-----------EEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 586 VEADLTRSKSLR---EKQSKEFLWQLEDIR-----QRYEQQIVELKLEHEQEKTHLLQQHNAekdslVRDHEREIENLEK 657
Cdd:COG3206 231 ARAELAEAEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727352834 658 QLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkQQLVELgllrEEEKQRATREHEIVVNKLK 732
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE-AELRRL----EREVEVARELYESLLQRLE 375
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
262-895 |
1.94e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 262 KQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEK----FDLQKQHTE 337
Cdd:TIGR00606 203 QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNeikaLKSRKKQME 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 338 NIQELLEDTNVRLNKMESEYMAQTQSTNH-MIKELEARVQQLTGEAENSNLQRQKLIQEKAELER---CYQITCSELQEV 413
Cdd:TIGR00606 283 KDNSELELKMEKVFQGTDEQLNDLYHNHQrTVREKERELVDCQRELEKLNKERRLLNQEKTELLVeqgRLQLQADRHQEH 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 414 KARRNTLHKE-KDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQ 492
Cdd:TIGR00606 363 IRARDSLIQSlATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 493 ENKfqmekshlKHIYEKKAHDLQSELDKGK--EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL 570
Cdd:TIGR00606 443 ELK--------KEILEKKQEELKFVIKELQqlEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 571 NSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFlWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHER 650
Cdd:TIGR00606 515 RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD-EQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE--INQTRD 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 651 EIENLEKQLRAANMEHENQIQEFKKRDAQVIA------------DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQ 718
Cdd:TIGR00606 592 RLAKLNKELASLEQNKNHINNELESKEEQLSSyedklfdvcgsqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 719 RATREHEIV-----VNKLKAESEKMKIELK-KTHAAETEmtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE 792
Cdd:TIGR00606 672 LTDENQSCCpvcqrVFQTEAELQEFISDLQsKLRLAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPEL 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 793 NSQQQlAAERRLQDVRQKFEDEKKQL--IRDNDQAIKVLQDE---LENRSNQVRCAEKKLQHKELESQ-----EQITYIR 862
Cdd:TIGR00606 750 RNKLQ-KVNRDIQRLKNDIEEQETLLgtIMPEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQgsdldRTVQQVN 828
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 727352834 863 QEYETK--------LKGLMPASLRQELEDTISSLKSQVNFL 895
Cdd:TIGR00606 829 QEKQEKqheldtvvSKIELNRKLIQDQQEQIQHLKSKTNEL 869
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
682-912 |
2.98e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 682 ADMEAQVHKLREELiNVNSQRKQQLVELGLlREEEKQRATReheiVVNKLKAESEKMKIELKKTHAAET----EMTLEKA 757
Cdd:COG3206 114 ASREAAIERLRKNL-TVEPVKGSNVIEISY-TSPDPELAAA----VANALAEAYLEQNLELRREEARKAleflEEQLPEL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 758 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLK-EENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQD-ELEN 835
Cdd:COG3206 188 RKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQQ 267
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 727352834 836 RSNQVRCAEKKLQhkELESQEQITYIR-QEYETKLKGLMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 912
Cdd:COG3206 268 LRAQLAELEAELA--ELSARYTPNHPDvIALRAQIAALR-AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
298-885 |
3.13e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 298 LKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEaRVQQ 377
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR-EALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 378 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALS 456
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRiHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 457 ASKASSMIEELEQNVCQLKQQLQESELQR-KQQLRDQENKFQMEKSHLKHIYEKKA---------HDLQSELDKGKEDTQ 526
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRlLQTLHSQEIHIRDAHEVATSIREISCqqhtltqhiHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 527 KKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLW 606
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 607 QLEDIRQRYEqqivELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhenQIQEFKKRDAQVIADMEA 686
Cdd:TIGR00618 477 TKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ---RGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 687 QVHKLREELINVNSQRKQQLVELGLLRE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSK 760
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQcdnrskEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 761 LKQIEKEYTQKLAKSSQIIAELQTT------------ISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL------IRDN 822
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTltqervrehalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLaqcqtlLREL 709
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727352834 823 DQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELEDTI 885
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA 772
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
216-626 |
3.69e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 216 DMKTKMMEAKFHEEKLKLQQKHDADVQKIlERKNNEIEELKTLyRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQI 295
Cdd:pfam15921 425 NMEVQRLEALLKAMKSECQGQMERQMAAI-QGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLT 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 296 AELKKIcEQSTESLNNDWEKKlhnavaemeQEKFDLQKQHTENIQEllEDTNVRLNKMESEYMA-QTQSTNHMIKELEAR 374
Cdd:pfam15921 503 ASLQEK-ERAIEATNAEITKL---------RSRVDLKLQELQHLKN--EGDHLRNVQTECEALKlQMAEKDKVIEILRQQ 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 375 VQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVK--------------ARRNTLHKEKDHLVNDYEQNMKLLQT 440
Cdd:pfam15921 571 IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdakireleARVSDLELEKVKLVNAGSERLRAVKD 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 441 KYDADINLLkQEHALSASKASSMIEE---LEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSE 517
Cdd:pfam15921 651 IKQERDQLL-NEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA 729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 518 LDKGKEDT---------QKKIHKFEEALKE--KEEQLTRvTEVQRLQAQQADAALEEFKRQVELNSekvyaeMKEQMEKV 586
Cdd:pfam15921 730 MGMQKQITakrgqidalQSKIQFLEEAMTNanKEKHFLK-EEKNKLSQELSTVATEKNKMAGELEV------LRSQERRL 802
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 727352834 587 EADLTRSKSLREKQSKEFLwQLEDIRQRYEQQIVELKLEH 626
Cdd:pfam15921 803 KEKVANMEVALDKASLQFA-ECQDIIQRQEQESVRLKLQH 841
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
394-744 |
4.03e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 394 QEKAELERCYQitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKydadinllkqehalsASKASSMIEELEQNVCQ 473
Cdd:TIGR02169 671 SEPAELQRLRE----RLEGLKRELSSLQSELRRI----ENRLDELSQE---------------LSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 474 LKQQlQESELQRKQQLRDQENKFQMEKSHLKhiyekkahDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVtevqrlQ 553
Cdd:TIGR02169 728 LEQE-EEKLKERLEELEEDLSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARLSHS------R 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 554 AQQADAALEEFKRQVelnsekvyAEMKEQMEKVEADLTRSKSLREkqskeflwQLEDIRQRYEQQIVELKL--EHEQEKT 631
Cdd:TIGR02169 793 IPEIQAELSKLEEEV--------SRIEARLREIEQKLNRLTLEKE--------YLEKEIQELQEQRIDLKEqiKSIEKEI 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 632 HLLQQHNAEKDSLVRDHEREIENLEKQ---LRAANMEHENQIQEFKKRdaqvIADMEAQVHKLREELINVNSQR---KQQ 705
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRlgdLKKERDELEAQLRELERK----IEELEAQIEKKRKRLSELKAKLealEEE 932
|
330 340 350
....*....|....*....|....*....|....*....
gi 727352834 706 LVELGLLREEEKQRAtrEHEIVVNKLKAESEKMKIELKK 744
Cdd:TIGR02169 933 LSEIEDPKGEDEEIP--EEELSLEDVQAELQRVEEEIRA 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
649-910 |
4.12e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 649 EREIENLEKQLRAAnMEHENQIQEFKKRDAQVIAdmeAQVHKLREELINVNSQRKQQLVELgllREEEKQRATREHEIVV 728
Cdd:COG1196 199 ERQLEPLERQAEKA-ERYRELKEELKELEAELLL---LKLRELEAELEELEAELEELEAEL---EELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 729 NKLKAESEKMKIELKKTHAAETEMTLEKANSKL---KQIEKEYTQKLAKSSQIIAELQTTISSLKE---ENSQQQLAAER 802
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIarlEERRRELEERLEELEEELAELEEELEELEEeleELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 803 RLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQvrcAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELE 882
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL---LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260
....*....|....*....|....*...
gi 727352834 883 DTISSLKSQVNFLQKRASILQEELTTYQ 910
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEE 456
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
323-891 |
4.52e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 323 EMEQEKFDLQKqhtenIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARvQQLTGEAENsnlQRQKLIQEKAELERC 402
Cdd:pfam01576 6 EMQAKEEELQK-----VKERQQKAESELKELEKKHQQLCEEKNALQEQLQAE-TELCAEAEE---MRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 403 YQITCSELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADiNLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 482
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKM----QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 483 LQRKQ----------QLRDQENKFQMeKSHLKHIYEKKAHDLQSEL---DKGKEDTQKKIHKFEEALKEKEEQLTRvtev 549
Cdd:pfam01576 152 KERKLleeriseftsNLAEEEEKAKS-LSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLEGESTDLQEQIAE---- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 550 qrLQAQQADAALEEFKRQVELNSEKVYAEmKEQMEKVEAdltrSKSLREKQS-----KEFLWQLEDIRQRYEQQIVELKL 624
Cdd:pfam01576 227 --LQAQIAELRAQLAKKEEELQAALARLE-EETAQKNNA----LKKIRELEAqiselQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 625 EHEQEKTHLL--QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVN--- 699
Cdd:pfam01576 300 ELEALKTELEdtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEkak 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 700 ----SQRKQQLVELGLL--REEEKQRATREHEIVVNKLKA---ESEKMKIEL-KKTHAAETEmtLEKANSKLKQIEKEYT 769
Cdd:pfam01576 380 qaleSENAELQAELRTLqqAKQDSEHKRKKLEGQLQELQArlsESERQRAELaEKLSKLQSE--LESVSSLLNEAEGKNI 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 770 QKLAKSSQIIAELQTTISSLKEENSQQ--------QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVR 841
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKlnlstrlrQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 727352834 842 CAEKKLQHKELESQEQITYIRQEYETKLKGL-----MPASLRQELEDTISSLKSQ 891
Cdd:pfam01576 538 GTLEALEEGKKRLQRELEALTQQLEEKAAAYdklekTKNRLQQELDDLLVDLDHQ 592
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
242-813 |
5.48e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 5.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 242 QKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAV 321
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQ 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 322 AEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQstnhmikeLEARVQQLTGEAENSNLQRQKLIQEKAELER 401
Cdd:TIGR00618 433 QELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ--------QLQTKEQIHLQETRKKAVVLARLLELQEEPC 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 402 CYQITCSELqEVKARRNTLHKEKDHLVNDYEQNMKLLQTKydadinllkqehalsaskassmIEELEQNVCQLKQQLQES 481
Cdd:TIGR00618 505 PLCGSCIHP-NPARQDIDNPGPLTRRMQRGEQTYAQLETS----------------------EEDVYHQLTSERKQRASL 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 482 ELQrKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEqltrvtevqrLQAQQADAAL 561
Cdd:TIGR00618 562 KEQ-MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK----------LQPEQDLQDV 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 562 EEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQledIRQRYEQqivelKLEHEQEKTHLLQQHNAEK 641
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLA---SRQLALQ-----KMQSEKEQLTYWKEMLAQC 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 642 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRD---AQVIADMEAQVHKLREELINVNSQRKQQL-VELGLLREEEK 717
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREdalNQSLKELMHQARTVLKARTEAHFNNNEEVtAALQTGAELSH 782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 718 QRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLkEENSQQQ 797
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQL 861
|
570
....*....|....*.
gi 727352834 798 LAAERRLQDVRQKFED 813
Cdd:TIGR00618 862 AQLTQEQAKIIQLSDK 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
454-683 |
6.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 6.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 454 ALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHI--YEKKAHDLQSELDKGKE---DTQKK 528
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELAALEAelaELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 529 IHKFEEALKEKEEQL-TRVTEVQRLQAQQADAAL------EEFKRQVELnSEKVYAEMKEQMEKVEADLTRSKSLREKQS 601
Cdd:COG4942 92 IAELRAELEAQKEELaELLRALYRLGRQPPLALLlspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 602 KEfLWQLEDIRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 681
Cdd:COG4942 171 AE-RAELEALLAELEEERAALEAL-KAERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 727352834 682 AD 683
Cdd:COG4942 245 AA 246
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
475-629 |
7.79e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 7.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 475 KQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 554
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727352834 555 QQADAALEEFKRQvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDIRQRYEQQIVELKLEHEQE 629
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
459-599 |
1.52e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.59 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 459 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQ-MEKSHLKhiYEKKAHDLQSELDKGKEDTQKKIHK-FEEAL 536
Cdd:PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKeAEKLKEE--LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 727352834 537 KEKEEQLTRVTEVQRLQ-----AQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 599
Cdd:PRK00409 584 KEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
557-869 |
2.11e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 45.00 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 557 ADAALEEFKRQVELNSEKVYAEMKEQMEKVeadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKT----- 631
Cdd:NF033838 52 GNESQKEHAKEVESHLEKILSEIQKSLDKR----------KHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTsktkk 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 632 ------HLLQQHNAEKDSLVRDHEREIENLEKQLRAANME-HENQIQEFKKRDAQVIADMEAQVHKLREELINVN---SQ 701
Cdd:NF033838 122 eldaafEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEakePR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 702 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK----------EYTQK 771
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrgvlgepatpDKKEN 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 772 LAKSSQIIAELQTTIS-SLKEEnsQQQLAAERRLQDVRQKFEDEKKQLIRD-NDQAIKVLQDELENRSNQVRCAEKKL-- 847
Cdd:NF033838 282 DAKSSDSSVGEETLPSpSLKPE--KKVAEAEKKVEEAKKKAKDQKEEDRRNyPTNTYKTLELEIAESDVKVKEAELELvk 359
|
330 340
....*....|....*....|...
gi 727352834 848 -QHKELESQEQITYIRQEYETKL 869
Cdd:NF033838 360 eEAKEPRNEEKIKQAKAKVESKK 382
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
559-905 |
2.59e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 559 AALEEFKrQVELNSEK---VYAEMKEQMEKVEadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEheqekthllq 635
Cdd:TIGR02169 174 KALEELE-EVEENIERldlIIDEKRQQLERLR---------REREKAERYQALLKEKREYEGYELLKEKE---------- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 636 qhnaekdslvrDHEREIENLEKQLRAANMEHEN---QIQEFKKRDA---QVIADMEAQVHKL-REELINVNSQRKQQLVE 708
Cdd:TIGR02169 234 -----------ALERQKEAIERQLASLEEELEKlteEISELEKRLEeieQLLEELNKKIKDLgEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 709 LGLLR--EEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAnsKLKQIEKEYTQKLAKSSQIIAELQTTI 786
Cdd:TIGR02169 303 IASLErsIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD--KLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 787 SSLKEENSQQQLAAE-------------RRLQDVRQKFEDEKKQL---IRDNDQAIKVLQDELENRSNQVRCAEKKLQhk 850
Cdd:TIGR02169 381 AETRDELKDYREKLEklkreinelkrelDRLQEELQRLSEELADLnaaIAGIEAKINELEEEKEDKALEIKKQEWKLE-- 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 727352834 851 elESQEQITYIRQEYETKLKGLmpaslrQELEDTISSLKSQVNFLQKRASILQEE 905
Cdd:TIGR02169 459 --QLAADLSKYEQELYDLKEEY------DRVEKELSKLQRELAEAEAQARASEER 505
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
607-819 |
2.71e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 607 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKD-----SLVRDHEREIENLEKQLRAANMEH---ENQIQEFKKRDA 678
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalaRRIRALEQELAALEAELAELEKEIaelRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 679 QVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAN 758
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 727352834 759 SKLKQIEKEYTQKLAKSS-------QIIAELQTTISSLKEE-NSQQQLAAERRLQDVRQKFEDEKKQLI 819
Cdd:COG4942 188 AALEALKAERQKLLARLEkelaelaAELAELQQEAEELEALiARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
347-805 |
5.03e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 347 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEK 424
Cdd:COG3096 237 ALRENRMTLEAIRVTQSDRDLFKHLITEATNYVAADymRHAN-ERRELSERALELRRELFGARRQLAEEQYRLVEMAREL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 425 DHLvndyEQNMKLLQTKYDAD---INLLkqehaLSASKASSMIEELEQNVCQLKQQLQESELQRKqqlrdqenkfqmEKS 501
Cdd:COG3096 316 EEL----SARESDLEQDYQAAsdhLNLV-----QTALRQQEKIERYQEDLEELTERLEEQEEVVE------------EAA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 502 HLKHIYEKKAHDLQSELDKGKedTQkkIHKFEEALkekEEQLTRVtevqrLQAQQADAALEEFKRQVEL------NSEKV 575
Cdd:COG3096 375 EQLAEAEARLEAAEEEVDSLK--SQ--LADYQQAL---DVQQTRA-----IQYQQAVQALEKARALCGLpdltpeNAEDY 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 576 YAEMKEQMEKVEADLtrsKSLREKQSKEflwqlEDIRQRYEQ--QIVELKLEH-----------EQEKTHLLQQHNAEKD 642
Cdd:COG3096 443 LAAFRAKEQQATEEV---LELEQKLSVA-----DAARRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 643 SLVRDHEREIENLEKQLRAAnmehENQIQEFKKRDAQVIADmeaqvhklREELINVNSQRKQQLVELG-LLREEEKQRAT 721
Cdd:COG3096 515 QQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIGQQLDA--------AEELEELLAELEAQLEELEeQAAEAVEQRSE 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 722 REHEivvnkLKAESEKMKiELKKTHAAetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 801
Cdd:COG3096 583 LRQQ-----LEQLRARIK-ELAARAPA-----WLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
....
gi 727352834 802 RRLQ 805
Cdd:COG3096 652 RKQA 655
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
265-904 |
5.21e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 265 ETEETIRKLEKKVQTLIRDCQ----VIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKfdlQKQHTENIQ 340
Cdd:TIGR01612 1023 EKEKATNDIEQKIEDANKNIPnieiAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIK---EKLKHYNFD 1099
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 341 ELLEDTNVR----LNKMESEYMAQTQSTNHMIKELEarvqQLTGEAENSnLQRQKLIQEKAELERCYQITCSELQEVKAR 416
Cdd:TIGR01612 1100 DFGKEENIKyadeINKIKDDIKNLDQKIDHHIKALE----EIKKKSENY-IDEIKAQINDLEDVADKAISNDDPEEIEKK 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 417 RNTLHKEKDHLVNDYEQNMKLLQ--TKYDADINLLKQEHALSAS------------------KASSMIEELEQNVCQLKQ 476
Cdd:TIGR01612 1175 IENIVTKIDKKKNIYDEIKKLLNeiAEIEKDKTSLEEVKGINLSygknlgklflekideekkKSEHMIKAMEAYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 477 QLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR--LQA 554
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKnlLDA 1334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 555 QQADAALEEFKRQV-------ELNS-EKVYAEMKEQMEKVE-------ADLTRSKSLREKQSKEFlwQLEDIRQRYEQQI 619
Cdd:TIGR01612 1335 QKHNSDINLYLNEIaniynilKLNKiKKIIDEVKEYTKEIEennknikDELDKSEKLIKKIKDDI--NLEECKSKIESTL 1412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 620 VELKLEHEQEKTHLLQQHNAEKDSlvrdhereieNLEKQLRAANMEHENQIQEFKKrdaqviadmeaqvhklreelINVN 699
Cdd:TIGR01612 1413 DDKDIDECIKKIKELKNHILSEES----------NIDTYFKNADENNENVLLLFKN--------------------IEMA 1462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 700 SQRKQQLVELgllreeEKQRATREHEIVVNKLKAESEKMKieLKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSS--- 776
Cdd:TIGR01612 1463 DNKSQHILKI------KKDNATNDHDFNINELKEHIDKSK--GCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSala 1534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 777 ------QIIAELQTTISSLKEENSQQQLAAERRLQDVRQ------KFEDEKKQLIRDNDQAIKVLQ--DELENRSNQVRC 842
Cdd:TIGR01612 1535 iknkfaKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEikkekfRIEDDAAKNDKSNKAAIDIQLslENFENKFLKISD 1614
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 727352834 843 AEKKLQH--KELESQEQ----ITYIRQEYETKLKGLMPASLRQELEdtisSLKSQVNFLQKRASILQE 904
Cdd:TIGR01612 1615 IKKKINDclKETESIEKkissFSIDSQDTELKENGDNLNSLQEFLE----SLKDQKKNIEDKKKELDE 1678
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
578-907 |
8.83e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.02 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 578 EMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLL-QQHNAEKDSLVRDHEREIENLE 656
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKgFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 657 KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELinvnSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESE 736
Cdd:COG5185 260 EQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 737 KMKIELKKTHAAETEMTLEKANSKLKQIE-KEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEK 815
Cdd:COG5185 336 TGIQNLTAEIEQGQESLTENLEAIKEEIEnIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 816 KQLIRDNDQ---AIKVLQDELENRSNQVRCAEKKLQHKELESQEqITYIRQEYETKLKGLMPASLRQELEDTISSLKSQV 892
Cdd:COG5185 416 KAADRQIEElqrQIEQATSSNEEVSKLLNELISELNKVMREADE-ESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRV 494
|
330
....*....|....*
gi 727352834 893 NFLQKRASILQEELT 907
Cdd:COG5185 495 STLKATLEKLRAKLE 509
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
236-718 |
9.34e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 236 KHDADVQKILERKNNEIEELKTLYrskqhetEETIRKLEKKVQTLIRDCQVIReTKEDQIAELKKICEQSTESLNNDWEK 315
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY-------EDKIEELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLLADLHK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 316 KLHNAVAEMEQEK--FDLQKQHTENIQEL---LEDTNVRLNKME-------------------------------SEYMA 359
Cdd:pfam15921 389 REKELSLEKEQNKrlWDRDTGNSITIDHLrreLDDRNMEVQRLEallkamksecqgqmerqmaaiqgkneslekvSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 360 QTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDyEQNMKLLQ 439
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLRNVQ 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 440 TKYDAdinlLKqehaLSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHD 513
Cdd:pfam15921 548 TECEA----LK----LQMAEKDKVIEILRQQIENMTQLVGQhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAK 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 514 LQsELDKGKEDTQKKIHKFEEAlkeKEEQLTRVTEVQrlqaQQADAALEEFKR-QVELNSekvyaeMKEQMEKVEADLTR 592
Cdd:pfam15921 620 IR-ELEARVSDLELEKVKLVNA---GSERLRAVKDIK----QERDQLLNEVKTsRNELNS------LSEDYEVLKRNFRN 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 593 SKSLREKQSKEFLWQLEDIRQRYEQQIVELKLE-----HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhe 667
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMegsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE-- 763
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 727352834 668 nqiQEFKKRDAqviadmeaqvHKLREELINVNSQRKQQLVELGLLREEEKQ 718
Cdd:pfam15921 764 ---KHFLKEEK----------NKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
355-767 |
1.19e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 355 SEYMAQTQSTNHMIKELEArvqqltgEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhkEKDHLVNDYEQN 434
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQK-------TIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLL--KKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 435 MKLLQTKYDAdinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQrkqqlrdqENKFQMEKS-HLKHIYEKKAHD 513
Cdd:COG5022 877 VELAERQLQE-----LKIDVKSISSLKLVNLELESEIIELKKSLSSDLIE--------NLEFKTELIaRLKKLLNNIDLE 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 514 LQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKV-----YAEMKEQMEKVEA 588
Cdd:COG5022 944 EGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSkqygaLQESTKQLKELPV 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 589 DLTRSKSL--REKQSKEFLWQLEDIR----------QRYEQQIVELKLEHEQEKTHLLQQHNAEKdslVRDHEREIEnlE 656
Cdd:COG5022 1024 EVAELQSAskIISSESTELSILKPLQklkgllllenNQLQARYKALKLRRENSLLDDKQLYQLES---TENLLKTIN--V 1098
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 657 KQLRAANMEHENQIQEFKKRDAQVIA-DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAES 735
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFIVAQMIKlNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS 1178
|
410 420 430
....*....|....*....|....*....|..
gi 727352834 736 EKmkielKKTHAAETEMTLEKANSKLKQIEKE 767
Cdd:COG5022 1179 EK-----RLYQSALYDEKSKLSSSEVNDLKNE 1205
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
238-632 |
1.45e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 238 DADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEqsteslnndwekKL 317
Cdd:TIGR00606 686 VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN------------KL 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 318 HNAVAEMEQEKFDLQKQHTE-----NIQELLEDTNVRLNKMESEYMaQTQSTNHMIKELEAR---------VQQLTGEAE 383
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLlgtimPEEESAKVCLTDVTIMERFQM-ELKDVERKIAQQAAKlqgsdldrtVQQVNQEKQ 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 384 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLlkQEHALSASKASSM 463
Cdd:TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV--QSLIREIKDAKEQ 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 464 IEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKaHDLQSELDKGKEDTQKK----IHKFEEALKEK 539
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM-KDIENKIQDGKDDYLKQketeLNTVNAQLEEC 989
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 540 EEQLTRVTEVQRLQAQQADAA-LEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLE---DIRQRY 615
Cdd:TIGR00606 990 EKHQEKINEDMRLMRQDIDTQkIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEeniDLIKRN 1069
|
410
....*....|....*..
gi 727352834 616 EQQIVELKLEHEQEKTH 632
Cdd:TIGR00606 1070 HVLALGRQKGYEKEIKH 1086
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
464-695 |
1.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 464 IEELEQNVCQLKQQLQ-----ESELQRKQQLRDQENKFQMEKSHLKH-IYEKKAHDLQSELDKGKEDTQKKIHKFEEALK 537
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 538 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVElnsekvyaemkeqmekveaDLTRSKSLREKQSKEFLWQLEDIRQRYEQ 617
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIE-------------------RLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 727352834 618 QIVELKLEHEQEKtHLLQQHNAEKDSLvRDHEREIENLEKQLRAANMEHENQIQEFKKRDaqviADMEAQVHKLREEL 695
Cdd:COG4913 378 SAEEFAALRAEAA-ALLEALEEELEAL-EEALAEAEAALRDLRRELRELEAEIASLERRK----SNIPARLLALRDAL 449
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
228-905 |
1.79e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 228 EEKLKLQQKHDADVQKILERKNNEIEELktlyrskQHETEETIRKLEKKVQT---LIRDCQVIRETkedqIAELKKICEQ 304
Cdd:pfam05483 98 EAELKQKENKLQENRKIIEAQRKAIQEL-------QFENEKVSLKLEEEIQEnkdLIKENNATRHL----CNLLKETCAR 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 305 STESlnndwEKKLHNAVAEMEQEKFDLQkQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAEN 384
Cdd:pfam05483 167 SAEK-----TKKYEYEREETRQVYMDLN-NNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 385 snlQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMI 464
Cdd:pfam05483 241 ---QVSLLLIQITEKENKMKDLTFLLEESRDKANQL-EEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALE 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 465 EELE---QNVCQLKQQlQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEdtQKKIHKFEEALKEKE- 540
Cdd:pfam05483 317 EDLQiatKTICQLTEE-KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNED--QLKIITMELQKKSSEl 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 541 EQLTRVTEVQRLQAQQADAALEEfkRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIR---QRYEQ 617
Cdd:pfam05483 394 EEMTKFKNNKEVELEELKKILAE--DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseEHYLK 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 618 QIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE-NQIQEFKKRDAQVIADMEAQVHKLREELI 696
Cdd:pfam05483 472 EVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDiINCKKQEERMLKQIENLEEKEMNLRDELE 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 697 NVNSQRKQQL--VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMT--LEKANSKLKQIEKEYTQKL 772
Cdd:pfam05483 552 SVREEFIQKGdeVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIeeLHQENKALKKKGSAENKQL 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 773 AKSSQIIAELQTTISSLKEE-----NSQQQLAAERRLQDVRQKFEDEKKQLIRDndQAIKvLQDELENRSNQVRCAEKKL 847
Cdd:pfam05483 632 NAYEIKVNKLELELASAKQKfeeiiDNYQKEIEDKKISEEKLLEEVEKAKAIAD--EAVK-LQKEIDKRCQHKIAEMVAL 708
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 848 QHKELESQEQITYIRQEYET--KLKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEE 905
Cdd:pfam05483 709 MEKHKHQYDKIIEERDSELGlyKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
356-724 |
1.85e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 356 EYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNM 435
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 436 KLLQTKYDADINLLKQEHALSASKASSMIEELEQnvcqlkQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ 515
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE------KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 516 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 595
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 596 LREKQSKEFLWQLEDiRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 675
Cdd:pfam02463 401 SEEEKEAQLLLELAR-QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 727352834 676 RDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREH 724
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
337-583 |
1.89e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 337 ENIQELLEDTNVRLNKMESeymaQTQSTNHMIKELEARVQQLTGeaensnlQRQKLIQEKAELERcyqitcsELQEVKAR 416
Cdd:COG4942 30 EQLQQEIAELEKELAALKK----EEKALLKQLAALERRIAALAR-------RIRALEQELAALEA-------ELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 417 RNTLHKEKDHLVNDYEQNMKLLQT--KYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQeselQRKQQLRDQEN 494
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 495 KFQMEKSHLKHIYEKKAhDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEK 574
Cdd:COG4942 168 ELEAERAELEALLAELE-EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
....*....
gi 727352834 575 VYAEMKEQM 583
Cdd:COG4942 247 GFAALKGKL 255
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
524-673 |
2.05e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 41.78 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 524 DTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAAL--EEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQs 601
Cdd:COG2268 211 ETEIAIAQANREAEEAELEQEREIETARIAEAEAELAKkkAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAERE- 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727352834 602 KEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEF 673
Cdd:COG2268 290 REIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAEGKRALAEAWNKLGDAAILLM 361
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
214-857 |
2.09e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 214 GLDMKTKMMEAKFHE----------EKLKLQQKHDADVQKILERKNNEIEELKTLY------RSKQHETEETIRKLEKKv 277
Cdd:TIGR00606 199 GQKVQEHQMELKYLKqykekaceirDQITSKEAQLESSREIVKSYENELDPLKNRLkeiehnLSKIMKLDNEIKALKSR- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 278 qtlirdcQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQE--LLEDTNVRLNKMES 355
Cdd:TIGR00606 278 -------KKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKErrLLNQEKTELLVEQG 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 356 EYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAElercyqitcSELQEVKARRNTLHKEKDHLVNDYEQNM 435
Cdd:TIGR00606 351 RLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIK---------NFHTLVIERQEDEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 436 KLLQ---TKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE--LQRKQQLRDQENKF-QMEKSHLKHIYEK 509
Cdd:TIGR00606 422 RLKQeqaDEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDriLELDQELRKAERELsKAEKNSLTETLKK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 510 KAHDLQSEldkgKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFK----RQVELNSEKVYAEMKEQMEK 585
Cdd:TIGR00606 502 EVKSLQNE----KADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKiksrHSDELTSLLGYFPNKKQLED 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 586 VEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHllqQHNAEKDSLVRDHEREIENLEKQLRAANME 665
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY---EDKLFDVCGSQDEESDLERLKEEIEKSSKQ 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 666 HE---------NQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVEL-GLLREEEKQRATREHEIVVNKLKAES 735
Cdd:TIGR00606 655 RAmlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLApDKLKSTESELKKKEKRRDEMLGLAPG 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 736 EKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAErrLQDVRQKFEDEK 815
Cdd:TIGR00606 735 RQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQME--LKDVERKIAQQA 812
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 727352834 816 KQLIR-DNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQ 857
Cdd:TIGR00606 813 AKLQGsDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ 855
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
550-705 |
3.00e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 550 QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKV-EADLTRSKSLREKQSKEFlwqlEDIRQRYEQqivelkLEHEQ 628
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRErNQQRQEARREREELQREE----ERLVQKEEQ------LDARA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 629 EKTHLLQQHNAEKDSLVRDHEREIENLEKQL-----RAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRK 703
Cdd:PRK12705 98 EKLDNLENQLEEREKALSARELELEELEKQLdnelyRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
..
gi 727352834 704 QQ 705
Cdd:PRK12705 178 AQ 179
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
516-849 |
3.01e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 516 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 595
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 596 LREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKthllQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 675
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK----EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 676 RDAQVIADMEAQVHKLREELINV--NSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMT 753
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKElkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 754 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL-IRDNDQAIKVLQDE 832
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELeLKKSEDLLKETQLV 480
|
330
....*....|....*..
gi 727352834 833 LENRSNQVRCAEKKLQH 849
Cdd:pfam02463 481 KLQEQLELLLSRQKLEE 497
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
607-756 |
3.10e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 607 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHERE-------IENLEKQLRAANMEHENQIQEFKKRDAQ 679
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKElrerrneLQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 680 V------IADMEAQVHKLREELINVNSQRKQQLVEL-GLLREEEKQratreheIVVNKLKAESEKMKIELKKTHAAETEM 752
Cdd:PRK12704 112 LekkekeLEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAKE-------ILLEKVEEEARHEAAVLIKEIEEEAKE 184
|
....
gi 727352834 753 TLEK 756
Cdd:PRK12704 185 EADK 188
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
343-584 |
3.43e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 343 LEDTNVRLNKME---SEYMAQTQSTNHMIKELEARVQQLTGEAENSN-LQRQKLIQEKAELE-------------RCYQI 405
Cdd:PRK04863 839 LRQLNRRRVELEralADHESQEQQQRSQLEQAKEGLSALNRLLPRLNlLADETLADRVEEIReqldeaeeakrfvQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 406 TCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQT---KYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 482
Cdd:PRK04863 919 ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDakqQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 483 LQR---KQQLRDQENKFQMekshlkhiYEKKAHDLQSELDKGKEDTQKKIHKF-----------EEALKEKEEQL----- 543
Cdd:PRK04863 999 QERtraREQLRQAQAQLAQ--------YNQVLASLKSSYDAKRQMLQELKQELqdlgvpadsgaEERARARRDELharls 1070
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 727352834 544 ---TRVTEVQRlQAQQADAALEEFKRQVELnSEKVYAEMKEQME 584
Cdd:PRK04863 1071 anrSRRNQLEK-QLTFCEAEMDNLTKKLRK-LERDYHEMREQVV 1112
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
466-741 |
3.62e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 466 ELEQNVCQLkQQLQESELQRKQQLrDQENKFQMEKSHLK-HIYEKKAHDLQSELDKGKEDtQKKIHKFEEALKEKEEQLT 544
Cdd:COG3096 851 ELAQHRAQE-QQLRQQLDQLKEQL-QLLNKLLPQANLLAdETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEPLVA 927
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 545 RV----TEVQRLQA--QQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQ 618
Cdd:COG3096 928 VLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKL-RARLEQAEEARREAREQ 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 619 ivelkLEHEQEKthlLQQHNAEKDSLVRDHereienlekqlRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREEL--- 695
Cdd:COG3096 1007 -----LRQAQAQ---YSQYNQVLASLKSSR-----------DAKQQTLQELEQELEELGVQADAEAEERARIRRDELhee 1067
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 727352834 696 INVNSQRKQQLvelgllreeEKQRATREHEI--VVNKLKAESEKMKIE 741
Cdd:COG3096 1068 LSQNRSRRSQL---------EKQLTRCEAEMdsLQKRLRKAERDYKQE 1106
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
354-705 |
3.92e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 354 ESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL--QEVKARRNTLHKEKDHLVNDY 431
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 432 EQNM-KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQL-QESELQRKQQLRDQEN--KFQMEKSHLKHIY 507
Cdd:pfam17380 347 ERELeRIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVrQELEAARKVKILEEERqrKIQQQKVEMEQIR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 508 EKKAHDLQSELDKGKEDTQKKIHKFeealkeKEEQLTRVTEVQRLQAQQAdaalEEFKRQVELNsekvyaemKEQMEKVE 587
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAREMERV------RLEEQERQQQVERLRQQEE----ERKRKKLELE--------KEKRDRKR 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 588 ADLTRSKSLREkqskeflwQLEDIRQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 667
Cdd:pfam17380 489 AEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*...
gi 727352834 668 NQIQEFKKRDAQVIADMEAqVHKLREELINVNSQRKQQ 705
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEA-MEREREMMRQIVESEKAR 588
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
520-741 |
4.34e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 520 KGKEDTQKKIHKFEEALKEKEEQLTRVTEVQrLQAQQADAALEEFKRqvELNSEKVYAEMKEQMEKVEADLTRSKSLREK 599
Cdd:PLN02939 163 TEKEALQGKINILEMRLSETDARIKLAAQEK-IHVEILEEQLEKLRN--ELLIRGATEGLCVHSLSKELDVLKEENMLLK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 600 QSKEFLWQLEDIRQRYEQQIVELKLEH--------EQEKTHLLQQHNAEK-DSLVRDHERE-IENLEKQLRAANMEHEN- 668
Cdd:PLN02939 240 DDIQFLKAELIEVAETEERVFKLEKERslldaslrELESKFIVAQEDVSKlSPLQYDCWWEkVENLQDLLDRATNQVEKa 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 669 -----QIQEFKKRDAQVIADM-EAQVHKLREELINVnSQRKQQLVELGLLREEEK--------QRATREHEIVVNKLKAE 734
Cdd:PLN02939 320 alvldQNQDLRDKVDKLEASLkEANVSKFSSYKVEL-LQQKLKLLEERLQASDHEihsyiqlyQESIKEFQDTLSKLKEE 398
|
....*..
gi 727352834 735 SEKMKIE 741
Cdd:PLN02939 399 SKKRSLE 405
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
260-791 |
4.44e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 260 RSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLN-NDWEKKLHNAVAEMEQEKFDL------Q 332
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGsQDEESDLERLKEEIEKSSKQRamlagaT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 333 KQHTENIQELLEDTNV------RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQIT 406
Cdd:TIGR00606 663 AVYSQFITQLTDENQSccpvcqRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 407 CSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTkYDADINLLK--QEHALSASKASSMIEELEQNVCQLKQQLQESELQ 484
Cdd:TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-IMPEEESAKvcLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 485 RKQQlrdQENKFQMEKSHLKHIYEKKAHDLQseldKGKEDTQKKIHKFEEALKE-KEEQLTRVTEVQRlqAQQADAALEE 563
Cdd:TIGR00606 822 RTVQ---QVNQEKQEKQHELDTVVSKIELNR----KLIQDQQEQIQHLKSKTNElKSEKLQIGTNLQR--RQQFEEQLVE 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 564 FKRQVElnseKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDS 643
Cdd:TIGR00606 893 LSTEVQ----SLIREIKDAKEQDSPLETFLEKDQQEK-EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG 967
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 644 lVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQvhKLREELINVNSQRKQQLVELGLLREEEKQRATRE 723
Cdd:TIGR00606 968 -KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQ--KIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727352834 724 HEIVVNKLKAESEKMKIELK-------KTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE 791
Cdd:TIGR00606 1045 GQMQVLQMKQEHQKLEENIDlikrnhvLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
288-883 |
4.67e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 288 RETKEDQIAELKKICEQSTESLNNdwEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHM 367
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQ--AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 368 IKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADIN 447
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES----EKEKKKAEKELKKEKE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 448 LLKQEHALSASKASSMIEELEQNVCQLKQQLQESE-------LQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDK 520
Cdd:pfam02463 336 EIEELEKELKELEIKREAEEEEEEELEKLQEKLEQleeellaKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 521 GKEDTQKKIHKfeEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQ 600
Cdd:pfam02463 416 QLEDLLKEEKK--EELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 601 SKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQV 680
Cdd:pfam02463 494 KLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTEL 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 681 IADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELK-KTHAAETEMTLEKANS 759
Cdd:pfam02463 574 PLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKlKESAKAKESGLRKGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 760 KLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQ 839
Cdd:pfam02463 654 LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 727352834 840 VRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELED 883
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA 777
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
561-769 |
5.09e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 561 LEEFKRQVELNSEKVYAEMKEQMEKVEadltrskslrekqskeflwQLEDIRQRYEQQIVELK--------LEHEQEKTH 632
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEIS-------------------ELENEIKELEQEIERLEpwgnfdldLSLLLGFKY 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 633 LlqqhnaekdsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELiNVNSQRKQQLVELGLL 712
Cdd:PRK05771 145 V----------SVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTP 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727352834 713 RE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHaAETEMTLEKANSKLKQIEKEYT 769
Cdd:PRK05771 214 SElireikEELEEIEKERESLLEELKELAKKYLEELLALY-EYLEIELERAEALSKFLKTDKT 275
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
223-792 |
5.23e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 223 EAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTlyrsKQHETEETIRKLEKKVQTLIRDcqviretkedqiaeLKKIC 302
Cdd:TIGR04523 48 ELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ----QIKDLNDKLKKNKDKINKLNSD--------------LSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 303 EQSteSLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNvRLNKMESEYmaqtQSTNHMIKELEARVQQLTGEA 382
Cdd:TIGR04523 110 SEI--KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEK-ELEKLNNKY----NDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 383 ENSNLQRQKLIQEKAELErcyqITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDaDINLLKQEHALSASKASS 462
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ-EINEKTTEISNTQTQLNQ 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 463 MIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSEL-------DKGKEDTQKKIHKFEEA 535
Cdd:TIGR04523 258 LKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELkselknqEKKLEEIQNQISQNNKI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 536 ---LKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVE-LNSEK-VYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLED 610
Cdd:TIGR04523 337 isqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEkLKKENqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 611 IRQRY---EQQIVELKLEHEQEKTHL--LQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFK------KRDAQ 679
Cdd:TIGR04523 417 LQQEKellEKEIERLKETIIKNNSEIkdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkqkelKSKEK 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 680 VIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKK---------THAAET 750
Cdd:TIGR04523 497 ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKeideknkeiEELKQT 576
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 727352834 751 EMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE 792
Cdd:TIGR04523 577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
702-910 |
5.69e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 702 RKQQLVELGLLREEEK----QRATREHEIV---VNKLKAESEKMKI---ELKKTHAAETEMTLEKANSKLKQIEKEYTQK 771
Cdd:PRK05771 26 HELGVVHIEDLKEELSnerlRKLRSLLTKLseaLDKLRSYLPKLNPlreEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 772 LAKssqiIAELQTTISSLKEENSQQQ--------LAAERRLQDVRQKF----EDEKKQLIRDNDQAIKVLQDELENRSNQ 839
Cdd:PRK05771 106 EEE----ISELENEIKELEQEIERLEpwgnfdldLSLLLGFKYVSVFVgtvpEDKLEELKLESDVENVEYISTDKGYVYV 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 727352834 840 VRCAEKKLQHKELESQEQITYIRQEYETKLKglmPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQ 910
Cdd:PRK05771 182 VVVVLKELSDEVEEELKKLGFERLELEEEGT---PSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
347-725 |
6.10e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 347 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEK 424
Cdd:PRK04863 238 ALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADymRHAN-ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 425 DHLVNdyeqNMKLLQTKY-DADINL-LKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSH 502
Cdd:PRK04863 317 AELNE----AESDLEQDYqAASDHLnLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 503 LK------------HIYEKKA---HDLQSELDKGKED------TQKKIHKFEEALKEKEEQLTRvtevQRLQAQQ----A 557
Cdd:PRK04863 393 DElksqladyqqalDVQQTRAiqyQQAVQALERAKQLcglpdlTADNAEDWLEEFQAKEQEATE----ELLSLEQklsvA 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 558 DAALEEFkrqvelnsEKVYAEMKeqmeKVEADLTRSKSLRekqskeflWQLEDIRQRYEQQivelkleHEQEKTHLLQQH 637
Cdd:PRK04863 469 QAAHSQF--------EQAYQLVR----KIAGEVSRSEAWD--------VARELLRRLREQR-------HLAEQLQQLRMR 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 638 NAEkdsLVRDHEREiENLEKQLRAANMEHENQIQEFKKRDaQVIADMEAQVHKLREELINVNSQR---KQQLVELGLLRE 714
Cdd:PRK04863 522 LSE---LEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDELE-QLQEELEARLESLSESVSEARERRmalRQQLEQLQARIQ 596
|
410
....*....|.
gi 727352834 715 EEKQRATREHE 725
Cdd:PRK04863 597 RLAARAPAWLA 607
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
459-818 |
7.51e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 459 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKE 538
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 539 KEEQLTRVTEVQRLQAQQADA--ALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflwqLEDIRQRYE 616
Cdd:COG4717 155 LEELRELEEELEELEAELAELqeELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE----LEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 617 QQIVELKLEHEQEK----------------------------------------------------THLLQQHNAEKDSL 644
Cdd:COG4717 231 QLENELEAAALEERlkearlllliaaallallglggsllsliltiagvlflvlgllallflllareKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 645 VRDHEREIENLEKQLRAANMEHENQIQEFKK--RDAQVIADMEAQVHKLREEL-INVNSQRKQQLVELG----------- 710
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLEllDRIEELQELLREAEELEEELqLEELEQEIAALLAEAgvedeeelraa 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 711 LLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELqttisslk 790
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL-------- 462
|
410 420
....*....|....*....|....*...
gi 727352834 791 eensqQQLAAERRLQDVRQKFEDEKKQL 818
Cdd:COG4717 463 -----EQLEEDGELAELLQELEELKAEL 485
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
739-898 |
7.77e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 739 KIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQI------------IAELQTTISSLKEE-----NSQQQLAA- 800
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrlaeyswdeidVASAEREIAELEAElerldASSDDLAAl 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 801 ERRLQDVRQKFEDEKKQLIRDNDQAIKvLQDELENRSNQVRCAEKKLQHKE-LESQEQITYIRQEYETKLKGLMPASLRQ 879
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGR-LEKELEQAEEELDELQDRLEAAEdLARLELRALLEERFAAALGDAVERELRE 769
|
170
....*....|....*....
gi 727352834 880 ELEDTISSLKSQVNFLQKR 898
Cdd:COG4913 770 NLEERIDALRARLNRAEEE 788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
223-480 |
8.09e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 8.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 223 EAKFHEEKLKLQQKHDADVQKILERKNNEIEELktlyRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKkic 302
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT--- 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 303 EQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKE---LEARVQQLT 379
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNErasLEEALALLR 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 380 GEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADINLLKQEHALSASK 459
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRR-------ELEELREKLAQLELRLEGL----EVRIDNLQERLSEEYSLTLEEAEALENK 962
|
250 260
....*....|....*....|.
gi 727352834 460 ASSMIEELEQNVCQLKQQLQE 480
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKE 983
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
641-893 |
8.12e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.03 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 641 KDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRA 720
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDE 1076
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 721 TREHEIV--------------------VNKLKAESEKMKIELKKTHAAETE-MTLEKANSKLKQIEKEYTQKLAKSSQII 779
Cdd:PTZ00108 1077 DDEEELGaavsydyllsmpiwsltkekVEKLNAELEKKEKELEKLKNTTPKdMWLEDLDKFEEALEEQEEVEEKEIAKEQ 1156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 780 AELQTTISSLKEENSQQQLAAERRlqdvrqkfedeKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQIT 859
Cdd:PTZ00108 1157 RLKSKTKGKASKLRKPKLKKKEKK-----------KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQ 1225
|
250 260 270
....*....|....*....|....*....|....
gi 727352834 860 YIRQEYETKLKGlmPASLRQELEDTISSLKSQVN 893
Cdd:PTZ00108 1226 EDDEEQKTKPKK--SSVKRLKSKKNNSSKSSEDN 1257
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
228-427 |
8.65e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 228 EEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRD-----CQVIRETKEDQIAELKKIc 302
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlshsrIPEIQAELSKLEEEVSRI- 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 303 EQSTESLNNDWEKK------LHNAVAEMEQEKFDLQKQHTENIQELlEDTNVRLNKMESEymaqTQSTNHMIKELEARVQ 376
Cdd:TIGR02169 811 EARLREIEQKLNRLtlekeyLEKEIQELQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEE----LEELEAALRDLESRLG 885
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 727352834 377 QLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHL 427
Cdd:TIGR02169 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
459-820 |
8.96e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 39.84 E-value: 8.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 459 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELdkgkedtQKKIHKFEEALKE 538
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRE----LRKTL-------LANRFSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 539 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 611
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 612 RQRYEQQivelkleheQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEH-ENQIQEFKKRDAQVIADMEA---- 686
Cdd:pfam06160 217 KEGYREM---------EEEGYALEHLNVDKE--IQQLEEQLEENLALLENLELDEaEEALEEIEERIDQLYDLLEKevda 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 687 --QVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEivvnklkaesekmkiELKKTHAAETEmtLEKANSKLKQI 764
Cdd:pfam06160 286 kkYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNEN---------------ELERVRGLEKQ--LEELEKRYDEI 348
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 727352834 765 EKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAErRLQDVRQKFEDEKKQLIR 820
Cdd:pfam06160 349 VERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKE-SLQSLRKDELEAREKLDE 403
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
327-662 |
9.58e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.67 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 327 EKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqit 406
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE----- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 407 csELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALSA--SKASSMIEELEQNVCQLKQQLQESEL 483
Cdd:TIGR02169 252 --ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAeiASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 484 QRKQQLRDQEN------KFQMEKSHLKHIYEKKA---HDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 554
Cdd:TIGR02169 330 EIDKLLAEIEElereieEERKRRDKLTEEYAELKeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727352834 555 QQADAALEEFKRQVELNSEkvYAEMKEQMEKVEADLTrSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLl 634
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAA--IAGIEAKINELEEEKE-DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL- 485
|
330 340
....*....|....*....|....*...
gi 727352834 635 qqhnaekdslvRDHEREIENLEKQLRAA 662
Cdd:TIGR02169 486 -----------SKLQRELAEAEAQARAS 502
|
|
| |
