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Conserved domains on  [gi|756761746|ref|NP_001291927|]
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transmembrane protein 170A isoform 4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tmemb_170 super family cl10884
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 1-76 1.54e-20

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


The actual alignment was detected with superfamily member pfam10190:

Pssm-ID: 462988  Cd Length: 106  Bit Score: 77.66  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756761746    1 MWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYG-----------------------AAIAGVYRAAGKEMIPFEALTLG 57
Cdd:pfam10190   8 MWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGrfipilillmgilipltggaitsAAIAFVYRASSFSMSPLYAMIWG 87

                          90
                  ....*....|....*....
gi 756761746   58 TGQTFCVLVVSFLRILATL 76
Cdd:pfam10190  88 VGQTILLVIISFTRILATL 106
 
Name Accession Description Interval E-value
Tmemb_170 pfam10190
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 1-76 1.54e-20

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


Pssm-ID: 462988  Cd Length: 106  Bit Score: 77.66  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756761746    1 MWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYG-----------------------AAIAGVYRAAGKEMIPFEALTLG 57
Cdd:pfam10190   8 MWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGrfipilillmgilipltggaitsAAIAFVYRASSFSMSPLYAMIWG 87

                          90
                  ....*....|....*....
gi 756761746   58 TGQTFCVLVVSFLRILATL 76
Cdd:pfam10190  88 VGQTILLVIISFTRILATL 106
 
Name Accession Description Interval E-value
Tmemb_170 pfam10190
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 1-76 1.54e-20

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


Pssm-ID: 462988  Cd Length: 106  Bit Score: 77.66  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756761746    1 MWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYG-----------------------AAIAGVYRAAGKEMIPFEALTLG 57
Cdd:pfam10190   8 MWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGrfipilillmgilipltggaitsAAIAFVYRASSFSMSPLYAMIWG 87

                          90
                  ....*....|....*....
gi 756761746   58 TGQTFCVLVVSFLRILATL 76
Cdd:pfam10190  88 VGQTILLVIISFTRILATL 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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