NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|756992484|ref|NP_001291939|]
View 

endoplasmic reticulum junction formation protein lunapark isoform 3 [Homo sapiens]

Protein Classification

zinc-ribbon domain-containing protein( domain architecture ID 10562191)

zinc-ribbon domain-containing protein such as vertebrate endoplasmic reticulum junction formation protein lunapark, an endoplasmic reticulum (ER)-shaping membrane protein that plays a role in determining ER morphology

Gene Ontology:  GO:0016020|GO:0046872
PubMed:  32851833

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 257-307 1.09e-24

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


:

Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.09e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 756992484  257 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 307
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 152-253 3.42e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 3.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  152 EPPSAGAAVTARpgqeirqrtAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlsSNVLPRHLGSPA 231
Cdd:PHA03247 2803 DPADPPAAVLAP---------AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSP 2871

                          90       100
                  ....*....|....*....|..
gi 756992484  232 TSVPGMGLHPPGPPLARPILPR 253
Cdd:PHA03247 2872 AAKPAAPARPPVRRLARPAVSR 2893
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 257-307 1.09e-24

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.09e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 756992484  257 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 307
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
84-313 7.77e-09

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 56.15  E-value: 7.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  84 AFPLIIWSI---RTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDpdskkakeceppsagaav 160
Cdd:COG5415   75 ALLLGSGSLymfRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYS------------------ 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 161 tarpgqeiRQRTAAQRNLSPTPAspnqgpppqvpvspgppkdssapggppertvtpalssnvlprhlgspATSVPGMGLH 240
Cdd:COG5415  137 --------EELNAKYQELNNLKT-----------------------------------------------EKEKFKKESH 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 756992484 241 PPGPPlarpilpRERGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 313
Cdd:COG5415  162 VKKKE-------DSDAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 152-253 3.42e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 3.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  152 EPPSAGAAVTARpgqeirqrtAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlsSNVLPRHLGSPA 231
Cdd:PHA03247 2803 DPADPPAAVLAP---------AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSP 2871

                          90       100
                  ....*....|....*....|..
gi 756992484  232 TSVPGMGLHPPGPPLARPILPR 253
Cdd:PHA03247 2872 AAKPAAPARPPVRRLARPAVSR 2893
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 168-259 2.11e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.37  E-value: 2.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 168 IRQRTAAQRNLSPTPASPNQGPPPQVPVSPG-PPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHP----P 242
Cdd:NF041121  15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPsPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALpvrvP 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 756992484 243 GP--------------PLARPILPRERGALD 259
Cdd:NF041121  95 APpalpnplelaralrPLKRRVPSPRRVELD 125
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 257-307 1.09e-24

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 1.09e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 756992484  257 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 307
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
84-313 7.77e-09

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 56.15  E-value: 7.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  84 AFPLIIWSI---RTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDpdskkakeceppsagaav 160
Cdd:COG5415   75 ALLLGSGSLymfRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYS------------------ 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 161 tarpgqeiRQRTAAQRNLSPTPAspnqgpppqvpvspgppkdssapggppertvtpalssnvlprhlgspATSVPGMGLH 240
Cdd:COG5415  137 --------EELNAKYQELNNLKT-----------------------------------------------EKEKFKKESH 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 756992484 241 PPGPPlarpilpRERGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 313
Cdd:COG5415  162 VKKKE-------DSDAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 152-253 3.42e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 3.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  152 EPPSAGAAVTARpgqeirqrtAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlsSNVLPRHLGSPA 231
Cdd:PHA03247 2803 DPADPPAAVLAP---------AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSP 2871

                          90       100
                  ....*....|....*....|..
gi 756992484  232 TSVPGMGLHPPGPPLARPILPR 253
Cdd:PHA03247 2872 AAKPAAPARPPVRRLARPAVSR 2893
PHA03247 PHA03247
large tegument protein UL36; Provisional
 153-252 4.03e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 4.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  153 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlSSNVLPRHLGSPAT 232
Cdd:PHA03247 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPPA 2821

                          90       100
                  ....*....|....*....|....*.
gi 756992484  233 SVPGMGLHPP------GPPLARPILP 252
Cdd:PHA03247 2822 ASPAGPLPPPtsaqptAPPPPPGPPP 2847
PHA03247 PHA03247
large tegument protein UL36; Provisional
 153-252 6.99e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 6.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  153 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTP------ALSSNVLPRH 226
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRpavaslSESRESLPSP 2801

                          90       100
                  ....*....|....*....|....*.
gi 756992484  227 LGSPATSVPGMGLHPPGPPLARPILP 252
Cdd:PHA03247 2802 WDPADPPAAVLAPAAALPPAASPAGP 2827
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 153-286 2.81e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.13  E-value: 2.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 153 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPA-----SPNQGPPPQVP---VSPGPPKDSSAPGGPPErtVTPALSSNVLP 224
Cdd:PRK14959 389 PASGGAATIPTPGTQGPQGTAPAAGMTPSSAapatpAPSAAPSPRVPwddAPPAPPRSGIPPRPAPR--MPEASPVPGAP 466

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 756992484 225 RHLGSPATSVPGMGlHPPGPPLARPILPRergALDRIVEYLVG-DGPQNRYALICQQCFSHNG 286
Cdd:PRK14959 467 DSVASASDAPPTLG-DPSDTAEHTPSGPR---TWDGFLEFCQGrNGQGGRLATVLRQATPEHA 525
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 153-268 4.03e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.76  E-value: 4.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  153 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPaspnQGPPPQVPVSPGP----PKDSSAPGgPPERTVTPALSSNVLPRHLG 228
Cdd:PRK10263  786 APQPQYQQPQQPVAPQPQYQQPQQPVAPQP----QYQQPQQPVAPQPqyqqPQQPVAPQ-PQDTLLHPLLMRNGDSRPLH 860

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 756992484  229 SPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGD 268
Cdd:PRK10263  861 KPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLAD 900
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 162-260 8.00e-04

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 41.73  E-value: 8.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 162 ARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGG-----PPERTVTPAlssnvlprhlgSPATSVPG 236
Cdd:PRK13729 107 EKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNtpvsfPPQGSVAVP-----------PPTAFYPG 175

                         90       100
                 ....*....|....*....|....
gi 756992484 237 MGLHPPGPPLARPIlpRERGALDR 260
Cdd:PRK13729 176 NGVTPPPQVTYQSV--PVPNRIQR 197
PHA03247 PHA03247
large tegument protein UL36; Provisional
 153-252 1.00e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  153 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGP-PPQVPVSPGPPKDSSAPGGPPerTVTPALSSNVLPRHLGSPA 231
Cdd:PHA03247 2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlPLGGSVAPGGDVRRRPPSRSP--AAKPAAPARPPVRRLARPA 2890

                          90       100
                  ....*....|....*....|.
gi 756992484  232 TSVPGMGLHPPGPPLARPILP 252
Cdd:PHA03247 2891 VSRSTESFALPPDQPERPPQP 2911
PHA03378 PHA03378
EBNA-3B; Provisional
 154-273 1.10e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.59  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 154 PSAGAAVTARPgqeirqRTAAQRNLSPTPASPNQGPPPQVPVSPG-PPKDSSAPGGPPERTVTPALSSNVLPRHLGSPAT 232
Cdd:PHA03378 676 PSPTGANTMLP------IQWAPGTMQPPPRAPTPMRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARPPAA 749

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 756992484 233 SvPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNR 273
Cdd:PHA03378 750 A-PGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQR 789
PHA03247 PHA03247
large tegument protein UL36; Provisional
 153-252 1.31e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  153 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGP-PPQVPVSPGPPKDSS---APGGPPERTVTPALSSNVLPRHLG 228
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPrRRAARPTVGSLTSLAdppPPPPTPEPAPHALVSATPLPPGPA 2726

                          90       100
                  ....*....|....*....|....*
gi 756992484  229 SPATSVPGMGLHP-PGPPLARPILP 252
Cdd:PHA03247 2727 AARQASPALPAAPaPPAVPAGPATP 2751
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 167-249 1.96e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 39.84  E-value: 1.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 167 EIRQRTAAQRNLSPTPASPnqGPPPQVPvSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSV------PGMGLH 240
Cdd:PHA02682  71 ACMQRPSGQSPLAPSPACA--APAPACP-ACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARpapacpPSTRQC 147


                 ....*....
gi 756992484 241 PPGPPLARP 249
Cdd:PHA02682 148 PPAPPLPTP 156
PHA03247 PHA03247
large tegument protein UL36; Provisional
 150-257 2.00e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 2.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  150 ECEPPSAGAAVTAR------PGQEIRQRT-AAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNV 222
Cdd:PHA03247 2572 RPAPRPSEPAVTSRarrpdaPPQSARPRApVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPER 2651

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 756992484  223 LPRHLGSPATSVPGMGLHPPGPPLAR--PILPRERGA 257
Cdd:PHA03247 2652 PRDDPAPGRVSRPRRARRLGRAAQASspPQRPRRRAA 2688
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 168-259 2.11e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.37  E-value: 2.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 168 IRQRTAAQRNLSPTPASPNQGPPPQVPVSPG-PPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHP----P 242
Cdd:NF041121  15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPsPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALpvrvP 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 756992484 243 GP--------------PLARPILPRERGALD 259
Cdd:NF041121  95 APpalpnplelaralrPLKRRVPSPRRVELD 125
PHA03247 PHA03247
large tegument protein UL36; Provisional
 153-248 2.59e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 2.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  153 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERtvTPALSSNVLPRHLGSPAT 232
Cdd:PHA03247 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP--QPPPPPPPRPQPPLAPTT 2947

                          90
                  ....*....|....*.
gi 756992484  233 SVPGMGLHPPGPPLAR 248
Cdd:PHA03247 2948 DPAGAGEPSGAVPQPW 2963
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
153-267 2.69e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.14  E-value: 2.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 153 PPSAGAAVTARPGQEIRQRTAAQrnlsPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERtVTPALSSNVLPrhlgspat 232
Cdd:PRK14971 391 QPSAAAAASPSPSQSSAAAQPSA----PQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA-VRPAQFKEEKK-------- 457

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 756992484 233 sVPGMGLHPPGPPLARPILPRERGALDRIVEYLVG 267
Cdd:PRK14971 458 -IPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTG 491
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 173-263 4.56e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 39.17  E-value: 4.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 173 AAQRNLSPTPASPNQGPPPQVPVSPGPPKDssapggPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPPGPPLARPILP 252
Cdd:PHA03291 206 ATPRPTPRTTASPETTPTPSTTTSPPSTTI------PAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279

                         90
                 ....*....|.
gi 756992484 253 RERGALDRIVE 263
Cdd:PHA03291 280 RYELTVTQIIQ 290
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 142-259 5.56e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.38  E-value: 5.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484  142 DPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPqvpvsPGPPKDSSAPGGPPERTVTPALSSN 221
Cdd:PHA03307  244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRE-----RSPSPSPSSPGSGPAPSSPRASSSS 318

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 756992484  222 VLPRHLGSPATSVPGMGLH----PPGPPLAR-PILPRERGALD 259
Cdd:PHA03307  319 SSSRESSSSSTSSSSESSRgaavSPGPSPSRsPSPSRPPPPAD 361
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
153-257 8.07e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.70  E-value: 8.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 756992484 153 PPSAGAAVTARPgqeiRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPG--GPPERTVTPALSSNVLPRHLGSP 230
Cdd:PRK12323 374 PATAAAAPVAQP----APAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPArrSPAPEALAAARQASARGPGGAPA 449

                         90       100
                 ....*....|....*....|....*..
gi 756992484 231 ATSVPGMGLHPPGPPLARPILPRERGA 257
Cdd:PRK12323 450 PAPAPAAAPAAAARPAAAGPRPVAAAA 476
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH