|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
512-1285 |
9.55e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 106.29 E-value: 9.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 512 QYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKI 591
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 592 VAYSSIAAKNAELEQELMEKNEKIRSLETNINTEhekiclafekakkihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKT 671
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESL---------------EAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 672 MSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEEtikVRQLDSALEICKEELVLHLNQLEGNKE 751
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE---LQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 752 KFEKQLKKKSEEVYCLQKELKIKN------HSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSK-LE 824
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQarldslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAaLG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 825 QELQKQRESSAEKLRK----MEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMH 900
Cdd:TIGR02168 545 GRLQAVVVENLNAAKKaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 901 LSQLDMIldQTKTELEKKTN---------------------AVKELEKLQHSTETELTEALQKREVLETELQNAHGELKS 959
Cdd:TIGR02168 625 VLVVDDL--DNALELAKKLRpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 960 TLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLdmtiREHRG 1039
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1040 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1119
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1120 QYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVRE 1199
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1200 AHLEARmqaeikklsaevesLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEK-------AKLELEEAQDTVSN 1272
Cdd:TIGR02168 939 DNLQER--------------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDF 1004
|
810
....*....|...
gi 807045883 1273 LHQQVQDRNEVIE 1285
Cdd:TIGR02168 1005 LTAQKEDLTEAKE 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
644-1311 |
6.53e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.13 E-value: 6.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 644 HKEMEKQIERLEAQLEKKdQQFKEQEKTMSMLQQDIICKQ--HHLESLDRLLtESKGEMKKENMKKDEALKALQNQVSEE 721
Cdd:TIGR02168 195 LNELERQLKSLERQAEKA-ERYKELKAELRELELALLVLRleELREELEELQ-EELKEAEEELEELTAELQELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 722 TIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQmlqq 801
Cdd:TIGR02168 273 RLEVSELEEEIEELQKEL----YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE---- 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 802 etirngELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELS 881
Cdd:TIGR02168 345 ------KLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 882 KMEKEIMHLKRDGENKAMHLSQldMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTL 961
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 962 RQLQELRD-------VLQKA------------QLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDqALKERNWELKQ 1022
Cdd:TIGR02168 496 RLQENLEGfsegvkaLLKNQsglsgilgvlseLISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIA-FLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1023 RAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL------NDKLQNAKEQLREKEFIML-------- 1088
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPGYRivtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1089 ------------QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQ 1156
Cdd:TIGR02168 655 vrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1157 QVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQ-----------------AEIKKLSAEVES 1219
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEeleaqieqlkeelkalrEALDELRAELTL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1220 LKEAYH---MEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKES 1296
Cdd:TIGR02168 815 LNEEAAnlrERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
730
....*....|....*
gi 807045883 1297 ELTRLQAKISGHEKA 1311
Cdd:TIGR02168 895 ELEELSEELRELESK 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
602-1305 |
2.32e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.12 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 602 AELEQELMEKNEKIRSLETNINTEHEKiclAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIIC 681
Cdd:TIGR02168 209 AEKAERYKELKAELRELELALLVLRLE---ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 682 KQHHLESLDRLLTEskgeMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVL---HLNQLEGNKEKFEKQLK 758
Cdd:TIGR02168 286 LQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 759 KKSEEvyclQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGE----LEDTQTKLEKQVSKLEQELQK-QRES 833
Cdd:TIGR02168 362 ELEAE----LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEArlerLEDRRERLQQEIEELLKKLEEaELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 834 SAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKaMHLSQLDMILDQTKT 913
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-EGFSEGVKALLKNQS 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 914 ELEKKTNAVKELEKLQHSTETELTEALQKR-EVLETELQNAHGELKSTLRQLQELR-----------DVLQKAQLSLEEK 981
Cdd:TIGR02168 517 GLSGILGVLSELISVDEGYEAAIEAALGGRlQAVVVENLNAAKKAIAFLKQNELGRvtflpldsikgTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 982 YTTIKDLTAELRECKMEIEDKKQELL-------EMDQALKERNwELKQRAAQVTHLDMTIREH-------------RGEM 1041
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLggvlvvdDLDNALELAK-KLRPGYRIVTLDGDLVRPGgvitggsaktnssILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1042 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMesvmkeqEQY 1121
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL-------EER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1122 IATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAH 1201
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1202 LEARM----------QAEIKKLSAEVESLKEayhmEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVS 1271
Cdd:TIGR02168 829 LERRIaaterrledlEEQIEELSEDIESLAA----EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
730 740 750
....*....|....*....|....*....|....
gi 807045883 1272 NLHQQVQDRNEVIEAANEALLTKESELTRLQAKI 1305
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
556-1305 |
3.61e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.27 E-value: 3.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 556 QEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNIntehekiclafek 635
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------------- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 636 akKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQ 715
Cdd:TIGR02168 305 --QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 716 NQVSEETIKVRQLDSaLEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQ 795
Cdd:TIGR02168 383 TLRSKVAQLELQIAS-LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 796 QQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQ 875
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 876 YKEE---------LSKMEKEIMHLKRDGENKAMHLSqLDMILDQTKTEleKKTNAVKELEKLQHSTETELTEALQKREVL 946
Cdd:TIGR02168 542 ALGGrlqavvvenLNAAKKAIAFLKQNELGRVTFLP-LDSIKGTEIQG--NDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 947 ETELQNAH--GELKSTLRQLQELR----------DVL----------QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ 1004
Cdd:TIGR02168 619 SYLLGGVLvvDDLDNALELAKKLRpgyrivtldgDLVrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1005 ELLEMDQALKERNWELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1081
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1082 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQ 1161
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1162 REIERLSSELEdmkQLSKEKDAHGNHLAEELGASKVREAHLEArMQAEIKKLSAEVESLKEAYhmemishqenhakwkis 1241
Cdd:TIGR02168 859 AEIEELEELIE---ELESELEALLNERASLEEALALLRSELEE-LSEELRELESKRSELRREL----------------- 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 807045883 1242 aDSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTK-ESELTRLQAKI 1305
Cdd:TIGR02168 918 -EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
435-1167 |
3.67e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.27 E-value: 3.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 435 EANKLVISELRIKLAIKEAEIQKLHANLTANQLsqslitcndsqessKLSSLETEPVKLGGHQVESVKDQNQHTMNKQ-Y 513
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRL--------------EVSELEEEIEELQKELYALANEISRLEQQKQiL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 514 EKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVA 593
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 594 YS-------SIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEM----EKQIERLEAQLEKKD 662
Cdd:TIGR02168 388 VAqlelqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEleelQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 663 QQFKEQEKTMSMLQQDIICKQHHLESLDRLLT--ESKGEMKKENMKKDEALKALQNQVSeETIKVrqlDSALEICKEE-L 739
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGILGVLS-ELISV---DEGYEAAIEAaL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 740 VLHLNQLEGNKEKFEKQ---LKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGEL------- 809
Cdd:TIGR02168 544 GGRLQAVVVENLNAAKKaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllg 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 810 -----EDTQTKLEKQVSK--------LEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQY 876
Cdd:TIGR02168 624 gvlvvDDLDNALELAKKLrpgyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 877 KEELSKMEKEIMHLKRDGEnkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGE 956
Cdd:TIGR02168 704 RKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 957 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQVTHLDMT 1033
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERriaATERRLEDLEEQIEELSEDIES 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1034 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1113
Cdd:TIGR02168 857 LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 807045883 1114 VMKEQEQYIATQYKEAIDLGQELRLTREqvqnshTELAEARHQQVQAQREIERL 1167
Cdd:TIGR02168 937 RIDNLQERLSEEYSLTLEEAEALENKIE------DDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
112-864 |
5.87e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 5.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 112 EIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQA--------ASVPILEEQIINLEAEVS 183
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaNEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 184 AQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKL 263
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 264 EKVQAEEEILERNltncekenkrlqercglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKnsEVMAQLTESRQSILKL 343
Cdd:TIGR02168 393 LQIASLNNEIERL------------------EARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEEL 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 344 ESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELF-GFKSYLSkyQMSS 422
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsGILGVLS--ELIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 423 FSNKEDRCIgccEA------NKLVISELriKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGH 496
Cdd:TIGR02168 531 VDEGYEAAI---EAalggrlQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 497 QVESVKDQNQHTMNkqYEKERQRLVTGIEELRTKLIQIEAENS--DLKVNMAHR----TSQFQLIQEELLEKASNSSKLE 570
Cdd:TIGR02168 606 DLVKFDPKLRKALS--YLLGGVLVVDDLDNALELAKKLRPGYRivTLDGDLVRPggviTGGSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 571 SEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQhKEMEKQ 650
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL-TELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 651 IERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENM---KKDEALKALQNQVSEETIKVRQ 727
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaaNLRERLESLERRIAATERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 728 LDSALEICKEE---LVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETI 804
Cdd:TIGR02168 843 LEEQIEELSEDiesLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 805 RNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEAdlkRQKVIELTG 864
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA---RRRLKRLEN 979
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
914-1204 |
6.28e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 6.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 914 ELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyttikdLTAELR 993
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-------LLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 994 ECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKL 1073
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAE-----------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1074 QNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEA 1153
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 807045883 1154 RHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEA 1204
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1011-1318 |
3.46e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 3.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1011 QALKErnwELKQRAAQVTHLDM-TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1089
Cdd:COG1196 216 RELKE---ELKELEAELLLLKLrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1090 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSS 1169
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1170 ELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLsAEVESLKEAYHMEMISHQENHAKWKISADSQKSSV 1249
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-ERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 1250 QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAEDIKFLP 1318
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
808-1183 |
4.06e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 4.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 808 ELEDTQTKLEKqVSKLEQELQKQRESsaeklrkmeekcesaaheadLKRQKvieltGTARQVKiemdQYKEELSKMEKEI 887
Cdd:COG1196 180 KLEATEENLER-LEDILGELERQLEP--------------------LERQA-----EKAERYR----ELKEELKELEAEL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 888 MHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQEL 967
Cdd:COG1196 230 LLLKLR---------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 968 RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLdmtirehrgemEQKIIK 1047
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA-----------EEALLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1048 LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYK 1127
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 807045883 1128 EAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDA 1183
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-1118 |
1.66e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 245 AEELSKAFQQYKK--KVAEKLEKVQAEEEILERnltncekenkrlqercGLYKSELEILKEKLRQLKEENNNGKEKLRIM 322
Cdd:TIGR02168 195 LNELERQLKSLERqaEKAERYKELKAELRELEL----------------ALLVLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 323 AVKNSEVMAQLTESRQSILKLESELENKDEILrdkFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKiisql 402
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQKQILRERLANLERQLEELEAQLEELES----- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 403 plKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSK 482
Cdd:TIGR02168 331 --KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 483 LSSLEtepvklggHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLek 562
Cdd:TIGR02168 409 LERLE--------DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD-- 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 563 asnssKLESEMTKKCSQLLTLEKQLEEkivaYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEkiclaFEKAKKIHLE 642
Cdd:TIGR02168 479 -----AAERELAQLQARLDSLERLQEN----LEGFSEGVKALLKNQSGLSGILGVLSELISVDEG-----YEAAIEAALG 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 643 QHKEMeKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMK--KENMKKDEALKALQNQVSE 720
Cdd:TIGR02168 545 GRLQA-VVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvaKDLVKFDPKLRKALSYLLG 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 721 ETIKVRQLDSALEICKE------------ELVL------------HLNQLEGNKE--KFEKQLKKKSEEVYCLQKELKIK 774
Cdd:TIGR02168 624 GVLVVDDLDNALELAKKlrpgyrivtldgDLVRpggvitggsaktNSSILERRREieELEEKIEELEEKIAELEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 775 NHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESsAEKLRKMEEKCESAAHEADL 854
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 855 KRQkviELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTET 934
Cdd:TIGR02168 783 EIE---ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 935 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK 1014
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1015 ernwELKQRAAQVTHLDMtirehrGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE----KEFImlqn 1090
Cdd:TIGR02168 940 ----NLQERLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEElkerYDFL---- 1005
|
890 900
....*....|....*....|....*...
gi 807045883 1091 EQEISQLKKEIERTQQRMKEMESVMKEQ 1118
Cdd:TIGR02168 1006 TAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
557-1101 |
1.15e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 76.26 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 557 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKA 636
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 637 KKihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRL------LTESKGEMKKENMKKDEA 710
Cdd:PRK03918 283 KE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeLKKKLKELEKRLEELEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 711 LKALQN--QVSEETIKVRQLDSALEIckEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVIL 788
Cdd:PRK03918 361 HELYEEakAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 789 QHTLQQQQQMLQQETIRN------------GELEDTQTKLEKQVSKLEQELQKQRESSaeKLRKMEEKCESAahEADLKR 856
Cdd:PRK03918 439 PVCGRELTEEHRKELLEEytaelkriekelKEIEEKERKLRKELRELEKVLKKESELI--KLKELAEQLKEL--EEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 857 QKVIELTGTARqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETEL 936
Cdd:PRK03918 515 YNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 937 TEALQKREvletELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD-QALKE 1015
Cdd:PRK03918 591 EERLKELE----PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyEELRE 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1016 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSElELKECNKQIESLNDKLQNAKEQLRE-KEFIMLQNEQEI 1094
Cdd:PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKyKALLKERALSKV 745
|
....*..
gi 807045883 1095 SQLKKEI 1101
Cdd:PRK03918 746 GEIASEI 752
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
511-1118 |
4.20e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 4.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 511 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 590
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 591 IVAYSSIAAKNAELEQELMEKNEKIRSLEtninTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEK 670
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAE----EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 671 TMSMLQQDIICKQHHLESLDRLLTEsKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNK 750
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEE-LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 751 EKFEKQLKKKSEEVycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQ 830
Cdd:COG1196 477 AALAELLEELAEAA--ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 831 RESSAEKLrkmeekcesAAHEADLKRQKVIELTGTARQVKiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQ 910
Cdd:COG1196 555 DDEVAAAA---------IEYLKAAKAGRATFLPLDKIRAR-AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 911 TKTELEKKTNAVKELEKLqhstETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTA 990
Cdd:COG1196 625 RTLVAARLEAALRRAVTL----AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 991 ELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL- 1069
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALg 780
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 807045883 1070 --NdklQNAKEQLRE----KEFIMLQNEqeisQLKKEIERTQQRMKEMESVMKEQ 1118
Cdd:COG1196 781 pvN---LLAIEEYEEleerYDFLSEQRE----DLEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
558-1310 |
4.35e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 4.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 558 ELLEKASNSSKLESEMTKKCSQLLTLEKQLEEkivAYSSIAAKNAELEQELMEKNEKIRSLEtnINTEHEKICL-AFEKA 636
Cdd:TIGR02169 157 KIIDEIAGVAEFDRKKEKALEELEEVEENIER---LDLIIDEKRQQLERLRREREKAERYQA--LLKEKREYEGyELLKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 637 KKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMsmlqqdiickqhhlESLDRLLTESKGEMKKenmKKDEALKALQN 716
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRL--------------EEIEQLLEELNKKIKD---LGEEEQLRVKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 717 QVSEETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQ 796
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKEREL----EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 797 QMLQQETIRNGELEDTQTKLEKQVSKLEQELQkqrESSAEKLRKMEEKCESAAHEADLkRQKVIELTGTARQVKIEMDQY 876
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREIN---ELKRELDRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDK 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 877 KEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGe 956
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHG- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 957 lksTLRQLQELRDVLQKA------------------------QLSLEEK--------YTTIKDLTAELRECKME-IEDKK 1003
Cdd:TIGR02169 526 ---TVAQLGSVGERYATAievaagnrlnnvvveddavakeaiELLKRRKagratflpLNKMRDERRDLSILSEDgVIGFA 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1004 QELLEMDQALKERNWELKQRAAQVTHLDmTIREHRGEMeqKIIKLEGTL-EKSELELKECNKQIESLNDKLQNAKE--QL 1080
Cdd:TIGR02169 603 VDLVEFDPKYEPAFKYVFGDTLVVEDIE-AARRLMGKY--RMVTLEGELfEKSGAMTGGSRAPRGGILFSRSEPAElqRL 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1081 REKEFIMlqnEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNShtelaearhqqvqa 1160
Cdd:TIGR02169 680 RERLEGL---KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL-------------- 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1161 QREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARM-QAEIKKLSAEVESLKEaYHMEmISHQENHAKWK 1239
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELSKLEE-EVSR-IEARLREIEQK 820
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 807045883 1240 ISADSQK-----SSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1310
Cdd:TIGR02169 821 LNRLTLEkeyleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
711-1305 |
5.75e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 5.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 711 LKALQNQvSEETIKVRQLDSALEICK-EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQnviLQ 789
Cdd:COG1196 202 LEPLERQ-AEKAERYRELKEELKELEaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE---LE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 790 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLeQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 869
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERR-RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 870 KIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 949
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 950 LQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTH 1029
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1030 LDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLND---KLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQ 1106
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1107 RMKEMESVMKEQEQYIATQYKEAIDLGQELRLTReqvqnshtELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGN 1186
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAA--------RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1187 HLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQEnhakwkisADSQKSSVQQLNEQLEKAKLELEEA 1266
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE--------RLEEELEEEALEEQLEAEREELLEE 740
|
570 580 590
....*....|....*....|....*....|....*....
gi 807045883 1267 QDTVSNLHQQVQDRNEVIEAANEALltkESELTRLQAKI 1305
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDLEEL---ERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
551-1114 |
6.36e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 6.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 551 QFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEkivayssIAAKNAELEQELMEKNEKIRSLETNINTEHEKIc 630
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEE-------LRLELEELELELEEAQAEEYELLAELARLEQDI- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 631 lAFEKAKKIHLEQHK-EMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDE 709
Cdd:COG1196 305 -ARLEERRRELEERLeELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 710 ALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQ 789
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 790 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 869
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 870 KIEMDQYK--EELSKMEKEIMHLKRDGENKAMHLSQLDM------ILDQTKTELEKKTNAVKELEKLQHSTETELTEALQ 941
Cdd:COG1196 544 LAAALQNIvvEDDEVAAAAIEYLKAAKAGRATFLPLDKIraraalAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 942 KREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELK 1021
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1022 QRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKEcnkqieslndklqnAKEQLREKEFIMLQNEQEISQLKKEI 1101
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE--------------EEELLEEEALEELPEPPDLEELEREL 769
|
570
....*....|...
gi 807045883 1102 ERTQQRMKEMESV 1114
Cdd:COG1196 770 ERLEREIEALGPV 782
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
557-1184 |
7.38e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.45 E-value: 7.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 557 EELLEKASNSS-KLESEMTKKCSQLLTLEKQLEEKIVAysSIAAKNAELEQELMEKNEKIRSLETNINTEHEkiclAFEK 635
Cdd:PRK02224 165 EEYRERASDARlGVERVLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARE----TRDE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 636 AKKIhLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKkDEALKALQ 715
Cdd:PRK02224 239 ADEV-LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD-AEAVEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 716 NQVSEETIKVRQldsALEICKEELVLHLNQLEGNKEK---FEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTL 792
Cdd:PRK02224 317 EELEDRDEELRD---RLEECRVAAQAHNEEAESLREDaddLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 793 QQQQQMLQQETIRNGELED-------TQTKLEKQVSKLEQELQKQRESSAEKLRKMEE-KC-------ESAAH--EADLK 855
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDfleelreERDELREREAELEATLRTARERVEEAEALLEAgKCpecgqpvEGSPHveTIEED 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 856 RQKVIELTGtarqvkiEMDQYKEELSKMEKEIMHLKRdgenkamhlsqldmiLDQTKTELEKKTNAVKELEKLQHSTETE 935
Cdd:PRK02224 474 RERVEELEA-------ELEDLEEEVEEVEERLERAED---------------LVEAEDRIERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 936 LTEalqKREVLEtELQNAHGELKStlrQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIE--DKKQELLEMDQAL 1013
Cdd:PRK02224 532 IEE---KRERAE-ELRERAAELEA---EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADA 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1014 KERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSelelkecnkQIESLNDKLQNAKEQLREKEFIMLQNEQE 1093
Cdd:PRK02224 605 EDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA---------RIEEAREDKERAEEYLEQVEEKLDELREE 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1094 ISQLKKEIERTQQRMKEMESVMKEQE------QYIATQYKEAidlgqelrltrEQVQNSHTEL-AEARhqqvqaQREIER 1166
Cdd:PRK02224 676 RDDLQAEIGAVENELEELEELRERREalenrvEALEALYDEA-----------EELESMYGDLrAELR------QRNVET 738
|
650
....*....|....*...
gi 807045883 1167 LSSELEDMKQLSKEKDAH 1184
Cdd:PRK02224 739 LERMLNETFDLVYQNDAY 756
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
511-1220 |
3.60e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 3.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 511 KQYEKERQRLVTGIEELRTKLIQIEAENSDLkvnMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 590
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKA---ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 591 IVAYSSIAAKNAELEQELMEKNEKIRSLetninTEHEKICLafekAKKIHleqhkEMEKQIERLEAQLEKKDQQFKEQEK 670
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDL-----GEEEQLRV----KEKIG-----ELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 671 TMSMLQQDIICKQHHLESLDRLLTESKGE---MKKENMKKDEALKALQNQVSEETIK---VRQLDSALEICKEELVLHLN 744
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRrdkLTEEYAELKEELEDLRAELEEVDKEfaeTRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 745 QLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSL----------------QETSEQNVILQHTLQQQQQMLQQETIRngE 808
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleeekedkaleikkQEWKLEQLAADLSKYEQELYDLKEEYD--R 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 809 LEDTQTKLEKQVSKLEQELQKQRESSAE--------------------KLRKMEEK----CESAAH--------EADLKR 856
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGgraveevlkasiqgvhgtvaQLGSVGERyataIEVAAGnrlnnvvvEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 857 QKVIELtgtARQVKI---------EMDQYKEELSKMEKEIMH-------------------------LKRDGENKAMHLS 902
Cdd:TIGR02169 561 KEAIEL---LKRRKAgratflplnKMRDERRDLSILSEDGVIgfavdlvefdpkyepafkyvfgdtlVVEDIEAARRLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 903 QLDM-------------ILDQTKTELEKKTNAVKELEKLQH------STETELTEALQKREVLETELQNAHGELKSTLRQ 963
Cdd:TIGR02169 638 KYRMvtlegelfeksgaMTGGSRAPRGGILFSRSEPAELQRlrerleGLKRELSSLQSELRRIENRLDELSQELSDASRK 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 964 LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDM--------TIR 1035
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlshsripEIQ 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1036 EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVM 1115
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1116 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELedmKQLSKEKDAHGNHLAEELGAS 1195
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL---SEIEDPKGEDEEIPEEELSLE 954
|
810 820
....*....|....*....|....*
gi 807045883 1196 KVreahlearmQAEIKKLSAEVESL 1220
Cdd:TIGR02169 955 DV---------QAELQRVEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
646-1223 |
8.66e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 8.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 646 EMEKQIERLEAQLEK--KDQQFKEQEKtmsmlQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEA---LKALQNQVSE 720
Cdd:COG1196 197 ELERQLEPLERQAEKaeRYRELKEELK-----ELEAELLLLKLRELEAELEELEAELEELEAELEELeaeLAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 721 ETIKVRQLDSALEICKEELVLHLNQLEgnkeKFEKQLKKKSEEvyclqkelkIKNHSLQETSEQNVILQHTLQQQQQMLQ 800
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEER---------RRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 801 QETIRNgELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQ------KVIELTGTARQVKIEMD 874
Cdd:COG1196 339 LEELEE-ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAaaelaaQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 875 QYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKRE-------VLE 947
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAeaaarllLLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 948 TELQNAHGELKSTLRQLQEL---RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNwelKQRA 1024
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAglrGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK---AGRA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1025 AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERT 1104
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1105 QQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAH 1184
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 807045883 1185 GNHLAEELGASKVREAHLEARMQ--AEIKKLSAEVESLKEA 1223
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPepPDLEELERELERLERE 775
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1089-1324 |
9.91e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.56 E-value: 9.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1089 QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLS 1168
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1169 SELEDMKQLSkEKDAHGNHLAEELGASKVREAhleARMQAEIKKLSAEVESLKEayhmEMISHQENHAKWKISADSQKSS 1248
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSPEDFLDA---VRRLQYLKYLAPARREQAE----ELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 807045883 1249 VQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAEDIKFLPAPFTSP 1324
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
578-1223 |
1.31e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 578 SQLLTLEKQleekivaySSIAAKNAELEQELMEKNE-----KIRSLETNINTEHEKIcLAFEKAKKIHLEQHKEMEKQIE 652
Cdd:COG1196 200 RQLEPLERQ--------AEKAERYRELKEELKELEAellllKLRELEAELEELEAEL-EELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 653 RLEAQLEKKDQQFKEQEKTMSMLQQDIIckqhHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSAL 732
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 733 EICKEELVLHLNQLEGNKEKFEKQLKKKSEEvycLQKELKIKNHSLQETSEQNVILQHTLQQQQqmlqqetirngELEDT 812
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEA---EEELEELAEELLEALRAAAELAAQLEELEE-----------AEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 813 QTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 892
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 893 DGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALqkREVLETELQNAHGElksTLRQLQELRDVLQ 972
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVE---DDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 973 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERnwELKQRAAQVTHLDMTIREHRGEMEQKIIK-LEGT 1051
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA--DARYYVLGDTLLGRTLVAARLEAALRRAVtLAGR 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1052 LEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAID 1131
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1132 LGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE-DMKQLSKEKDAHG--NHLA-EELGASKVREAHLEarmq 1207
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELErELERLEREIEALGpvNLLAiEEYEELEERYDFLS---- 801
|
650
....*....|....*.
gi 807045883 1208 AEIKKLSAEVESLKEA 1223
Cdd:COG1196 802 EQREDLEEARETLEEA 817
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
646-1313 |
7.24e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 7.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 646 EMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDE-ALKALQNQVSEETIK 724
Cdd:pfam15921 146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSmSTMHFRSLGSAISKI 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 725 VRQLDSALEICKEELVLHLNQLEG----NKEKFEKQLKKKSEEVYCLQKELKIKNHSLQET-----SEQNVILQHTLQQQ 795
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEAlkseSQNKIELLLQQHQDRIEQLISEHEVEITGLTEKassarSQANSIQSQLEIIQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 796 QQMLQQETIRNGELEDtqtkLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQ 875
Cdd:pfam15921 306 EQARNQNSMYMRQLSD----LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 876 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKL--------QHSTETELTEALQKREVLE 947
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecQGQMERQMAAIQGKNESLE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 948 tELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 1027
Cdd:pfam15921 462 -KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1028 THLDmtirehrgemeqkiiKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQR 1107
Cdd:pfam15921 541 DHLR---------------NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1108 MKEMESVMKEQEQYIatqyKEAIDLGQELRLTREQVQNSHTELAEA----RHQQVQAQREIERLSSELEDMKQLSKEKDA 1183
Cdd:pfam15921 606 LQEFKILKDKKDAKI----RELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKR 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1184 HGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEM---ISHQENHAKWKISADSQKSSVQQLNEQLEKAK 1260
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvaMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 807045883 1261 LELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAED 1313
Cdd:pfam15921 762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
109-699 |
8.27e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 8.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 109 VDQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSML-ESAQQQAASVPILEEQIINLEAEVSAQDK 187
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELkEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 188 VLREAENKL--EQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKafqqykkkVAEKLEK 265
Cdd:TIGR02168 380 QLETLRSKVaqLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE--------LEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 266 VQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLK--EENNNGKEKLRIMAVKNSEVMAQLTESRQSILKL 343
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 344 ESELE----------------NKDEILRDKFSLMNENRELKV--------RVAAQNERLDLCQQEIESSRVELRSLEKII 399
Cdd:TIGR02168 532 DEGYEaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 400 SQLP----------------------LKRELFGF-------KSYLSKYQMSSFSNKEDRCIGCCEANklvISELRIKLAI 450
Cdd:TIGR02168 612 PKLRkalsyllggvlvvddldnalelAKKLRPGYrivtldgDLVRPGGVITGGSAKTNSSILERRRE---IEELEEKIEE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 451 KEAEIQKLHANLTANQLSQSLITCN------DSQESSKLSSLETEPVKLGGHQVESVKDQNQHTM--NKQYEKERQRLVT 522
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEEleqlrkELEELSRQISALRKDLARLEAEVEQLEERIAQLSkeLTELEAEIEELEE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 523 GIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNA 602
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 603 ELEQELMEKNEKIRSLETNINTEHEKIclafekakKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICK 682
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
650
....*....|....*..
gi 807045883 683 QHHLESLDRLLTESKGE 699
Cdd:TIGR02168 921 REKLAQLELRLEGLEVR 937
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
809-1121 |
1.21e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 809 LEDTQTKLEKQVSKLEQELQKqressAEKLRKMEEKCESAAHEAdlkrqkvieLTGTARQVKIEMDQYKEELSKMEKEIM 888
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEK-----AERYKELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 889 HLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELR 968
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 969 DVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ----- 1043
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrr 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1044 ----------KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1113
Cdd:TIGR02168 417 erlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
....*...
gi 807045883 1114 VMKEQEQY 1121
Cdd:TIGR02168 497 LQENLEGF 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
809-1313 |
1.22e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 809 LEDTQTKLEKQVSKLEQELqKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV---KIEMDQYKEELSKMEK 885
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLekeVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 886 EIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLEtELQNAHGELKSTLRQLQ 965
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLD-ELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 966 ELRDVLQKAQlSLEEKYTTIKDLTAELRECKMEIEdKKQELLEMDQALKERNWELKQRAAQVTHLDM-----TIREHRGE 1040
Cdd:PRK03918 325 GIEERIKELE-EKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEKLekeleELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1041 MEQKIIKLE---GTLEKSELELKECNKQIESLNDKLQNAKEQLRE--KEFIMLQNEQEISQLKKEIERTQQRMKEMESVM 1115
Cdd:PRK03918 403 IEEEISKITariGELKKEIKELKKAIEELKKAKGKCPVCGRELTEehRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1116 KEQEQYIATQ-----YKEAIDLGQELR-----LTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHG 1185
Cdd:PRK03918 483 RELEKVLKKEselikLKELAEQLKELEeklkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1186 NHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYhmemishqenhaKWKISADSQKSSVQQLNEQLEKAKLELEE 1265
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFY------------NEYLELKDAEKELEREEKELKKLEEELDK 630
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1266 AQDTVSNLHQQVQDRNEVIEAAN------------EALLTKESELTRLQAKISGHEKAED 1313
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELEkkyseeeyeelrEEYLELSRELAGLRAELEELEKRRE 690
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
633-1222 |
1.84e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 633 FEKAKKIHLEQHKEMEKQIERLEAQLEKK---DQQFKEQEKTMSMLQQDIICKQHHLESLdrlltESKGEMKKENMKKDE 709
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTeniEELIKEKEKELEEVLREINEISSELPEL-----REELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 710 ALKALQNQVSEETIKVRQLDSALEICKEELvlhlnqlegnkEKFEKQLKKKSEEVYCLQKELKiknhSLQETSEQNVILQ 789
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIREL-----------EERIEELKKEIEELEEKVKELK----ELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 790 HTLQQQQQMLQqetirngELEDTQTKLEKQVSKLEQELQKqRESSAEKLRKMEEKCESAAHEADLKRQKViELTGTARQV 869
Cdd:PRK03918 300 EFYEEYLDELR-------EIEKRLSRLEEEINGIEERIKE-LEEKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 870 KIEMDQYKEELS-----KMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTET---ELTEALQ 941
Cdd:PRK03918 371 KEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 942 KREVLE--TELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKdltaeLRECKMEIEDKKQELLEMDQALKERNWE 1019
Cdd:PRK03918 451 KELLEEytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK-----LKELAEQLKELEEKLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1020 LKQraaqvthldmTIREHRGEMEQKIIKLEGTLEKSEL---ELKECNKQIESLNDKLQNAKEQLREKEFimlqneqeisq 1096
Cdd:PRK03918 526 EYE----------KLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGF----------- 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1097 lkKEIERTQQRMKEMESVMKEqeqyiatqYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1176
Cdd:PRK03918 585 --ESVEELEERLKELEPFYNE--------YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 807045883 1177 LSKEKDahgnhlaeelgASKVREAHLEARMqaEIKKLSAEVESLKE 1222
Cdd:PRK03918 655 KYSEEE-----------YEELREEYLELSR--ELAGLRAELEELEK 687
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
252-1121 |
3.33e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 3.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 252 FQQYKKKVAEKLEKVQAEEEILErnltncekenkrlqercglykSELEILKEKLRQLKEENNNgkeklrimAVKNSEVMA 331
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLD---------------------LIIDEKRQQLERLRREREK--------AERYQALLK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 332 QLTESRQSILkleselenkdeiLRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGF 411
Cdd:TIGR02169 219 EKREYEGYEL------------LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 412 KSYLS-KYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTanQLSQSLitcndSQESSKLSSLETEp 490
Cdd:TIGR02169 287 EEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE--ELEREI-----EEERKRRDKLTEE- 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 491 vklgghqvesvkdqnqhtmnkqYEKERQRLvtgiEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLE 570
Cdd:TIGR02169 359 ----------------------YAELKEEL----EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 571 SEMTKKCSQLLTLEKQLEekivaysSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIclafEKAKKihleQHKEMEKQ 650
Cdd:TIGR02169 413 EELQRLSEELADLNAAIA-------GIEAKINELEEEKEDKALEIKKQEWKLEQLAADL----SKYEQ----ELYDLKEE 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 651 IERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQ-------NQVSEETI 723
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnrlNNVVVEDD 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 724 KVRQldSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEE----------VYCLQKELKIKNHSLQETSEQNVILQHTLQ 793
Cdd:TIGR02169 558 AVAK--EAIELLKRRKAGRATFLPLNKMRDERRDLSILSEdgvigfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRL 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 794 QQQQMLQ----------------QETIRNGELEDTQTKLE-KQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKR 856
Cdd:TIGR02169 636 MGKYRMVtlegelfeksgamtggSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS 715
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 857 QKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQHSTETE 935
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEaRLSHSRIPE 795
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 936 LTEALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE 1015
Cdd:TIGR02169 796 IQAELSK---LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1016 RNWELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMlQNEQ 1092
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEaqlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP-EEEL 951
|
890 900 910
....*....|....*....|....*....|
gi 807045883 1093 EISQLKKEIERTQQRMKEMESV-MKEQEQY 1121
Cdd:TIGR02169 952 SLEDVQAELQRVEEEIRALEPVnMLAIQEY 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
138-994 |
4.60e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 4.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 138 MTKFESIHFELtqsRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDkvLREAENKLEQSQKMVIEKEQSLQESKEEC 217
Cdd:TIGR02168 188 LDRLEDILNEL---ERQLKSLERQAEKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 218 IKLKVDLLEQTKQGKRAERQRNEA---LYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLY 294
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELqkeLYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 295 KSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELEnkdeilrdkfSLMNENRELKVRVAAQ 374
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA----------SLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 375 NERLDLCQQEIESSRVELRS--LEKIISQLPLKRELfgfksylskyqmssfsnkEDRCIGCCEANKLVISELRIKLAIKE 452
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEaeLKELQAELEELEEE------------------LEELQEELERLEEALEELREELEEAE 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 453 AEIQKLHANLtaNQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQ--NQHTMNKQYEKE--------RQRLVT 522
Cdd:TIGR02168 475 QALDAAEREL--AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELISVDEGYEAAieaalggrLQAVVV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 523 GIEELRTKLIQIEAENSDLKVNMahrtsqfqLIQEELLEKASNSSKLESEMTKKCSQ--LLTLEKQLEEKIVAYSSIAA- 599
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTF--------LPLDSIKGTEIQGNDREILKNIEGFLgvAKDLVKFDPKLRKALSYLLGg 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 600 -KNAELEQELMEKNEKIRSLETNINTEHEKI----CLAFEKAKKIHLEQHKEMEkqIERLEAQLEKKDQQFKEQEKTMSM 674
Cdd:TIGR02168 625 vLVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggVITGGSAKTNSSILERRRE--IEELEEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 675 LQQDIICKQHHLESLDRLLTEskgemkkenmkKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFE 754
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEE-----------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 755 KqlkkkseevycLQKELKiknhslqetseqnvilqhtlqqqqqmlqqetirngELEDTQTKLEKQVSKLEQELQKQRESS 834
Cdd:TIGR02168 772 E-----------AEEELA-----------------------------------EAEAEIEELEAQIEQLKEELKALREAL 805
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 835 AEklrkmeekcesaaheadlKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTE 914
Cdd:TIGR02168 806 DE------------------LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 915 LEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRE 994
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
500-1212 |
4.75e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 500 SVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEelLEKASNSSKLESEMTKKCSQ 579
Cdd:PTZ00121 1075 SYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE--ARKAEDARKAEEARKAEDAK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 580 LLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLA--FEKAKKIHLEQHKEMEKQIERL--- 654
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAArkAEEERKAEEARKAEDAKKAEAVkka 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 655 -EAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALE 733
Cdd:PTZ00121 1233 eEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 734 ICKEELVLHLNQLEGNKE-----KFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGE 808
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKadaakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 809 LEDTQTKLEKQVSKLEQELQKQRESS-AEKLRKMEE---KCESAAHEADLKRqKVIELTGTARQVKIEMDQYKEELSKME 884
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAKKkADEAKKKAEekkKADEAKKKAEEAK-KADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 885 KEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLET--ELQNAHGELKS-TL 961
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKAdEL 1551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 962 RQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemdQALKERNWELKQRAAQVthldmtirehRGEM 1041
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-----EVMKLYEEEKKMKAEEA----------KKAE 1616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1042 EQKIIKLEgtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY 1121
Cdd:PTZ00121 1617 EAKIKAEE--LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1122 I--ATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVRE 1199
Cdd:PTZ00121 1695 KkeAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
730
....*....|...
gi 807045883 1200 AHLEARMQAEIKK 1212
Cdd:PTZ00121 1775 KEKEAVIEEELDE 1787
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
876-1289 |
5.09e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.21 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 876 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTEALQKREVLETELQNAHG 955
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLR----ETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 956 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK---QELLEMDQALKERNWELKQRAAqvthldm 1032
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLEERAE------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1033 TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKefimlqnEQEISQLKKEIERTQQRMKEME 1112
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA-------EDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1113 SVMKEQEQYIAtqykEAIDL---------GQELRLT---------REQVQNSHTELAEARHQQVQAQREIERLSSELEDM 1174
Cdd:PRK02224 433 ATLRTARERVE----EAEALleagkcpecGQPVEGSphvetieedRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1175 KQLSKEKDAHGNhlAEELGASKVREAHLEARMQAEIKKLSAEVESlkeayhmEMISHQENHAKWKISADSQKSSVQQLNE 1254
Cdd:PRK02224 509 DRIERLEERRED--LEELIAERRETIEEKRERAEELRERAAELEA-------EAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 807045883 1255 QLEKAKLELE------EAQDTVSNLHQQVQDRNEVIEAANE 1289
Cdd:PRK02224 580 KLAELKERIEslerirTLLAAIADAEDEIERLREKREALAE 620
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
111-660 |
6.26e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 111 QEIKSLREKLNKLRQQnacLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQAASvpiLEEQIINLEAEVSAQDKVLR 190
Cdd:COG1196 274 LELEELELELEEAQAE---EYELLAELARLEQDIARLEERRRELEERLEELEEELAE---LEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 191 EAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEE 270
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 271 EILERNLTNCEKENKRLQERcglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENK 350
Cdd:COG1196 428 EALAELEEEEEEEEEALEEA----AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 351 DEILRDKFSLMNENRELKVRVAAQNERLDlcqqEIESSRVELRSLEKIISQLPLKRElfgfksylskyqmssfsNKEDRC 430
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGV----EAAYEAALEAALAAALQNIVVEDD-----------------EVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 431 IGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSletepvkLGGHQVESVKDQNQHTMn 510
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV-------LGDTLLGRTLVAARLEA- 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 511 kqyekERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 590
Cdd:COG1196 635 -----ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 591 IVAYSSIAAKNAELEQELMEKNEKIRSLEtNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEK 660
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELL-EELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
931-1137 |
9.46e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 9.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 931 STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD 1010
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1011 QALKERNWELkQRAAQVTHLDMTIR-EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1089
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 807045883 1090 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1137
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
645-1182 |
1.06e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 645 KEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIK 724
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 725 VRQldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVilqhtlqqqqqmlqqeti 804
Cdd:TIGR04523 116 KEQ--------KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE------------------ 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 805 rngELEDTQTKLEKQVSKLEQELQKQR------ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKE 878
Cdd:TIGR04523 170 ---ELENELNLLEKEKLNIQKNIDKIKnkllklELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 879 ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVK----ELEKLQHSTETELTEALQKR-EVLETELQNA 953
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNqlksEISDLNNQKEQDWNKELKSElKNQEKKLEEI 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 954 HGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemDQALKERNWELKQRAAQVTHLDMT 1033
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1034 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1113
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 1114 VMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKD 1182
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
935-1314 |
1.25e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 935 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTTIKDLTAELRECKMEIEDKKQELlemdQA 1012
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERL----EE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1013 LKERNWELKQRAAQVTHLDMTIREHRGEMEQKiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1092
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEEL---LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1093 EISQLKKEIERTQ--QRMKEMESV------------MKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQV 1158
Cdd:COG4717 228 ELEQLENELEAAAleERLKEARLLlliaaallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1159 QAQREIERLSSE--LEDMKQLSKEKDAHGNHLAEELG-ASKVREAHLEARM---QAEIKKLSAEVESLKEAYHMEMISHQ 1232
Cdd:COG4717 308 QALPALEELEEEelEELLAALGLPPDLSPEELLELLDrIEELQELLREAEEleeELQLEELEQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1233 ENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVS--NLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1310
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
....
gi 807045883 1311 AEDI 1314
Cdd:COG4717 468 DGEL 471
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
441-971 |
1.60e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 441 ISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGhqvesvKDQNQHTMNKQYEKERQRL 520
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ------DIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 521 VTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAK 600
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 601 NAELEQELMEKNEKIRSLETNINTEHEKIcLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDII 680
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEAL-AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 681 CKQHHLESLDRLLtESKGEMKKENMKKDEALKALQN---------QVSEETIKVRQLDSALEICKEELVLHLN-QLEGNK 750
Cdd:COG1196 481 ELLEELAEAAARL-LLLLEAEADYEGFLEGVKAALLlaglrglagAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 751 EKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTqTKLEKQVSKLEQELQKQ 830
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT-LLGRTLVAARLEAALRR 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 831 RESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQ 910
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 807045883 911 TKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVL 971
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
557-1300 |
1.73e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 557 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKA 636
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 637 KKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALK---- 712
Cdd:pfam02463 256 SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKkeke 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 713 ---ALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQ 789
Cdd:pfam02463 336 eieELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 790 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLR--KMEEKCESAAHEADLKRQKVIELTGTAR 867
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELelKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 868 QVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLD----------MILDQTKTELEKKTNAVKELEKLQHSTETELT 937
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDlgvavenykvAISTAVIVEVSATADEVEERQKLVRALTELPL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 938 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERN 1017
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1018 WELKQRA-AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1096
Cdd:pfam02463 656 EGLAEKSeVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1097 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1176
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1177 LSKEKDAHGNHLAEELgASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQL 1256
Cdd:pfam02463 816 LLEEEQLLIEQEEKIK-EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 807045883 1257 EKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1300
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
179-949 |
2.16e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 2.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 179 EAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEAlynAEELSKAFQQYKKK 258
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE-------ISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLR 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 259 VAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEEnnngkekLRIMAVKNSEVMAQLTESRQ 338
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE-------IEEERKRRDKLTEEYAELKE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 339 SILKLESELENKDEilrdkfslmnENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLP-----LKRELFGFKS 413
Cdd:TIGR02169 365 ELEDLRAELEEVDK----------EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSeeladLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 414 YLSKYQ--MSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQ--LSQSLITCNDSQESSKLSSLETE 489
Cdd:TIGR02169 435 KINELEeeKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQreLAEAEAQARASEERVRGGRAVEE 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 490 PVKLGGH-------QVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQI---------------------------- 534
Cdd:TIGR02169 515 VLKASIQgvhgtvaQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELlkrrkagratflplnkmrderrdlsils 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 535 EAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCS-QLLTLEKQLEEK-------IVAYSSIAAKNAELEQ 606
Cdd:TIGR02169 595 EDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKyRMVTLEGELFEKsgamtggSRAPRGGILFSRSEPA 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 607 ELMEKNEKIRSLETNINTEHEKIC----LAFEKAKKIHL--EQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDII 680
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRrienRLDELSQELSDasRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 681 CKQHHLESLDrlltESKGEMKKENMKKDEALKALQNQVSEETIK-VRQLDSALEICKEELVLHLNQLEG--NKEKFEKQ- 756
Cdd:TIGR02169 755 NVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHSRIPeIQAELSKLEEEVSRIEARLREIEQklNRLTLEKEy 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 757 LKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlqqetirNGELEDTQTKLEKQVSKLEQ------ELQKQ 830
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENL--------------------NGKKEELEEELEELEAALRDlesrlgDLKKE 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 831 RESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEimhlkrdgenkamhlSQLDMILDQ 910
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI---------------PEEELSLED 955
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 807045883 911 TKTELEKKTNAVKELEKLQHSTETELTEAL-------QKREVLETE 949
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLkrldelkEKRAKLEEE 1001
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
815-1304 |
2.81e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.49 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 815 KLEKQVSKLEQELQKQRESSAEKLRKMEEKcesaAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDG 894
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKK----EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 895 ENKAMHLSQLDMiLDQTKTELEKKTNavkELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKA 974
Cdd:TIGR04523 197 LKLELLLSNLKK-KIQKNKSLESQIS---ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 975 QLSLEEKYTTIKDLTAELRECKMEIEDKKQE--------------------------LLEMDQALKERNWELKQRAAQVT 1028
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwnkelkselknqekkleeiqnqISQNNKIISQLNEQISQLKKELT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1029 HLDMTIREHRGEMEQK---IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQ 1105
Cdd:TIGR04523 353 NSESENSEKQRELEEKqneIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1106 QRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHG 1185
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1186 NHLAEELGASKVREAHLEarmqAEIKKLSAEVESLKEayHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1265
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLE----SEKKEKESKISDLED--ELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEE 586
|
490 500 510
....*....|....*....|....*....|....*....
gi 807045883 1266 AQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAK 1304
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1094-1313 |
3.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1094 ISQLKKEIERTQQRMKEMES-------VMKEQEQYI---------ATQYKE---------AIDLGQELRLTREQVQNSHT 1148
Cdd:COG1196 167 ISKYKERKEEAERKLEATEEnlerledILGELERQLeplerqaekAERYRElkeelkeleAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1149 ELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAyHMEM 1228
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1229 ISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGH 1308
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
....*
gi 807045883 1309 EKAED 1313
Cdd:COG1196 406 EEAEE 410
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1034-1223 |
3.13e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 3.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1034 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1113
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1114 VMKEQEQ---------------------YIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE 1172
Cdd:COG4942 112 ALYRLGRqpplalllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 807045883 1173 DMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1223
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
984-1298 |
3.69e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 3.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 984 TIKDLTAELRECKMEIEDKKQELLEM---------DQALkernwELKQRAA---QVTHLDMTIREH---RGEMEQKIIKL 1048
Cdd:COG4913 156 DIRALKARLKKQGVEFFDSFSAYLARlrrrlgigsEKAL-----RLLHKTQsfkPIGDLDDFVREYmleEPDTFEAADAL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1049 EG---TLEKSELELKECNKQIESL------NDKLQNAKEQLREKEFIM-----LQNEQEISQLKKEIERTQQRMKEMEsv 1114
Cdd:COG4913 231 VEhfdDLERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRaalrlWFAQRRLELLEAELEELRAELARLE-- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1115 mkEQEQyiatqykeaiDLGQELRLTREQVQNSHTELAEARHQQVQA-QREIERLSSELEDMKQLSKEKDAhgnhLAEELG 1193
Cdd:COG4913 309 --AELE----------RLEARLDALREELDELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEA----LLAALG 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1194 ASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEmishqenhakwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNL 1273
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEA--------------LAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
330 340
....*....|....*....|....*
gi 807045883 1274 HQQVQdrnEVIEAANEALLTKESEL 1298
Cdd:COG4913 439 PARLL---ALRDALAEALGLDEAEL 460
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
480-1075 |
5.42e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 5.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 480 SSKLSSLETEPVKLGGH------QVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQ 553
Cdd:pfam15921 223 SKILRELDTEISYLKGRifpvedQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 554 LIQEELLEKAS----NSSKLESEMTKKCSQLLTLEKQLEEKIvayssiaaknAELEQELMEKNEKIrsleTNINTEHEKI 629
Cdd:pfam15921 303 IIQEQARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKI----------EELEKQLVLANSEL----TEARTERDQF 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 630 ClafekakkihlEQHKEMEKQIERLEAQLEKKDQQF---KEQEK-----------TMSMLQQDIICKQHHLESLDRLLTE 695
Cdd:pfam15921 369 S-----------QESGNLDDQLQKLLADLHKREKELsleKEQNKrlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKA 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 696 SKGEMKKEnmkKDEALKALQNQvSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQ-KELKIK 774
Cdd:pfam15921 438 MKSECQGQ---MERQMAAIQGK-NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQeKERAIE 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 775 NHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLE-----KQVSKLEQEL--------QKQRESSAEKLRKM 841
Cdd:pfam15921 514 ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQmaekdKVIEILRQQIenmtqlvgQHGRTAGAMQVEKA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 842 EEKCESAAHEADLKRQKVIELTGTARQVKIEmdqykEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNa 921
Cdd:pfam15921 594 QLEKEINDRRLELQEFKILKDKKDAKIRELE-----ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN- 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 922 vkELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1001
Cdd:pfam15921 668 --ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDA 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1002 KKQELLEMDQALKERNWE---LKQRAAQVTHLDMTIREHRGEM--------------EQKIIKLEGTLEKSELELKECNK 1064
Cdd:pfam15921 746 LQSKIQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMagelevlrsqerrlKEKVANMEVALDKASLQFAECQD 825
|
650
....*....|....*.
gi 807045883 1065 QI-----ESLNDKLQN 1075
Cdd:pfam15921 826 IIqrqeqESVRLKLQH 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-402 |
5.72e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 5.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 111 QEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLE-SAQQQAASVPILEEQIINLEAEVSAQDKVL 189
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaQIEQLKEELKALREALDELRAELTLLNEEA 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 190 REAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAF---QQYKKKVAEKLEKV 266
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELEEL 899
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 267 QAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEE-NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLES 345
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 807045883 346 ELENKDEIlrdKFSLMNENRELKvrvaaqnERLDLCQQEIESSRVELRSLEKIISQL 402
Cdd:TIGR02168 980 KIKELGPV---NLAAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-780 |
8.34e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 8.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 151 SRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMV--------------IEKEQSLQESKEE 216
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeeeqlrvkekIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 217 CIKLKVDLLEQT-KQGKRAERQRNEALYNAEELSKAFQQYKKKVA---EKLEKVQAEEEILERNLTNCEKENKRLQERCG 292
Cdd:TIGR02169 309 SIAEKERELEDAeERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 293 LYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVA 372
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 373 AQNERLDLCQQEIESsrvELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNK--------------EDRCIGCCEA-- 436
Cdd:TIGR02169 469 QELYDLKEEYDRVEK---ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaqlgsvGERYATAIEVaa 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 437 -----NKLVISELRIKLAIKEAEIQKL--HANLTANQLSQS------------------LITCND--------------- 476
Cdd:TIGR02169 546 gnrlnNVVVEDDAVAKEAIELLKRRKAgrATFLPLNKMRDErrdlsilsedgvigfavdLVEFDPkyepafkyvfgdtlv 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 477 --SQESSKLSSLETEPVKLGGHQVE--------SVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMA 546
Cdd:TIGR02169 626 veDIEAARRLMGKYRMVTLEGELFEksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 547 HRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINT-- 624
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDle 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 625 ---EHEKICLAFEKAKKIHlEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIickqhhlesldRLLTESKGEMK 701
Cdd:TIGR02169 786 arlSHSRIPEIQAELSKLE-EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR-----------IDLKEQIKSIE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 702 KENMKKDEALKALQNQVSEETIKVRQLDSALEICK---EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSL 778
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKkerDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
..
gi 807045883 779 QE 780
Cdd:TIGR02169 934 SE 935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
720-1318 |
1.08e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 720 EETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKEL--KIKNHSLQETSEQNVILQHTLQQQQQ 797
Cdd:TIGR02169 160 DEIAGVAEFDRKKEKALEEL----EEVEENIERLDLIIDEKRQQLERLRRERekAERYQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 798 MLQQETIRN--GELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESaahEADLKRQKVIELTGTARQVKIEMDQ 875
Cdd:TIGR02169 236 ERQKEAIERqlASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE---EQLRVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 876 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKlqhstetELTEALQKREVLETELQNAHG 955
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-------ELEDLRAELEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 956 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVthldMTIR 1035
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL----EQLA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1036 EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE----KEFIMLQNEQEISQLKKEIERTQQRMKEM 1111
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGgravEEVLKASIQGVHGTVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1112 ESVMKEQEQYIATQ----YKEAIDLGQELRLTR------EQVQNSHTEL----------------------AEARHQQVQ 1159
Cdd:TIGR02169 542 EVAAGNRLNNVVVEddavAKEAIELLKRRKAGRatflplNKMRDERRDLsilsedgvigfavdlvefdpkyEPAFKYVFG 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1160 AQREIERLSSELEDMKQ----------LSKEKDAHGNHLAEELGAS-KVREAHLEARMQAEIKKLSAEVESLkeayhMEM 1228
Cdd:TIGR02169 622 DTLVVEDIEAARRLMGKyrmvtlegelFEKSGAMTGGSRAPRGGILfSRSEPAELQRLRERLEGLKRELSSL-----QSE 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1229 ISHQENH---AKWKISADSQKSS-----VQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1300
Cdd:TIGR02169 697 LRRIENRldeLSQELSDASRKIGeiekeIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776
|
650
....*....|....*...
gi 807045883 1301 LQAKISGHEKAEDIKFLP 1318
Cdd:TIGR02169 777 LEEALNDLEARLSHSRIP 794
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1083-1329 |
1.35e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.18 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1083 KEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtQYKEA---IDLGQELRLTREQVQNSHTELAEARHQQVQ 1159
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALE-EFRQKnglVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1160 AQREIERLSSELEDMKQLSKE--KDAHGNHLAEELGASKVREAHLEARMQAE---IKKLSAEVESLKEAYHMEMishQEN 1234
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNhpdVIALRAQIAALRAQLQQEA---QRI 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1235 HAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRnEVIEAANEALLTKeseltRLQAKISGHEKAEDI 1314
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV-EVARELYESLLQR-----LEEARLAEALTVGNV 388
|
250
....*....|....*
gi 807045883 1315 KFLPAPFTSPTEIMP 1329
Cdd:COG3206 389 RVIDPAVVPLKPVSP 403
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
466-1153 |
2.15e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.75 E-value: 2.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 466 QLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIqiEAENSDLKVNM 545
Cdd:TIGR00618 204 QLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE--ELRAQEAVLEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 546 AHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQElmeknekiRSLETNINTE 625
Cdd:TIGR00618 282 TQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--------RRLLQTLHSQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 626 HEKICLAFEKAKKI--HLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQ--QDIICKQHHLESLDRL-LTESKGEM 700
Cdd:TIGR00618 354 EIHIRDAHEVATSIreISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQreQATIDTRTSAFRDLQGqLAHAKKQQ 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 701 KKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKiknhSLQE 780
Cdd:TIGR00618 434 ELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE-----QQLQTKEQIHLQETRKKAVVLARLLELQ----EEPC 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 781 TSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEAdLKRQKVI 860
Cdd:TIGR00618 505 PLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT-QCDNRSK 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 861 ELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENK---AMHLSQLDMILDQTKTELEKKTNAVK--ELEKLQHSTETE 935
Cdd:TIGR00618 584 EDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKlqpEQDLQDVRLHLQQCSQELALKLTALHalQLTLTQERVREH 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 936 LTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE 1015
Cdd:TIGR00618 664 ALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1016 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK-EFIMLQNEQEI 1094
Cdd:TIGR00618 744 SLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPSDEDILNLQC 823
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 1095 SQLKKEIERTQQRMKEMESVMKEqeqyIATQYKEAIDLGQELRLTREQVQNSHTELAEA 1153
Cdd:TIGR00618 824 ETLVQEEEQFLSRLEEKSATLGE----ITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
561-1145 |
2.46e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 561 EKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAyssiaaknaelEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIH 640
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALQEQLQA-----------ETELCAEAEEMRARLAARKQELEEILHELESRLEEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 641 LEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDR---LLTESKGEMKKENMKKDEALKALQNQ 717
Cdd:pfam01576 88 EERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEdilLLEDQNSKLSKERKLLEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 718 VSEETIKVR---QLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQ 794
Cdd:pfam01576 168 LAEEEEKAKslsKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 795 QQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQR--ESSAEKLRK------------MEEKCESAAHEADLKRQKVI 860
Cdd:pfam01576 248 ALARLEEETAQKNNALKKIRELEAQISELQEDLESERaaRNKAEKQRRdlgeelealkteLEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 861 ELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNavkELEKLQHSTETELTEAL 940
Cdd:pfam01576 328 EVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENA---ELQAELRTLQQAKQDSE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 941 QKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKErnwEL 1020
Cdd:pfam01576 405 HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE---ET 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1021 KQRAAQVTHLDMTIREHRGEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKE 1100
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQ--------LEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 807045883 1101 IERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQN 1145
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSN 598
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-410 |
2.49e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 2.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 147 ELTQSRAKVSMLESAQQQaasvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 254 ELEELEAELAELEAELEE------LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 227 QTKQGKRAERQRNEALYNAEELSKAFQQykkkVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEE----AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 307 QLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250 260
....*....|....*....|....
gi 807045883 387 SSRVELRSLEKIISQLPLKRELFG 410
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFL 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
110-394 |
2.60e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 110 DQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQ-QQAASVPILEEQIINLEAEVSAQDKV 188
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 189 LREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQA 268
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAE-------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 269 eeeiLERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEEnnngKEKLRIMAVKNSEVMAQLTESRQSilkLESELE 348
Cdd:TIGR02168 829 ----LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL----IEELESELEALLNERASLEEALAL---LRSELE 897
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 807045883 349 NKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRS 394
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-402 |
2.67e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 147 ELTQSRAKVSMLESAQQQAASvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 223 KELEAELLLLKLRELEAELEE---LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 227 QTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 307 QLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250
....*....|....*.
gi 807045883 387 SSRVELRSLEKIISQL 402
Cdd:COG1196 460 ALLELLAELLEEAALL 475
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1042-1223 |
4.15e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 4.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1042 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY 1121
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1122 IATQYKEAIDLGQ----ELRLTREQVQNS------HTELAEARHQQVQAQR----EIERLSSELEDMKQLSKEKDAHGNH 1187
Cdd:COG4942 106 LAELLRALYRLGRqpplALLLSPEDFLDAvrrlqyLKYLAPARREQAEELRadlaELAALRAELEAERAELEALLAELEE 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 807045883 1188 LAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1223
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
959-1167 |
4.47e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 4.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 959 STLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECkmeiedkkQELLEMDQALKERNWELKQRAAqvthLDMTIREHR 1038
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDAL--------QERREALQRLAEYSWDEIDVAS----AEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1039 GEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQ 1118
Cdd:COG4913 675 AELER--------LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE 746
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 807045883 1119 EQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHqqvQAQREIERL 1167
Cdd:COG4913 747 LRALLEERFAAALGDAVERELRENLEERIDALRARLN---RAEEELERA 792
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
724-1300 |
6.87e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 6.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 724 KVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEvycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQET 803
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREA---LQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 804 IRNGE--LEDTQTKLEKQVSK---------LEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQkviELTGTARQVKIE 872
Cdd:TIGR00618 272 LRAQEavLEETQERINRARKAaplaahikaVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ---QSSIEEQRRLLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 873 MDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAV-KELEKLQHSTETELTEaLQKREVLETELQ 951
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLcKELDILQREQATIDTR-TSAFRDLQGQLA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 952 NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLD 1031
Cdd:TIGR00618 428 HAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLC 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1032 MTIREHRGEMEQKIIK--LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1109
Cdd:TIGR00618 508 GSCIHPNPARQDIDNPgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1110 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHgnhla 1189
Cdd:TIGR00618 588 NLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE----- 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1190 eELGASKVREAHLEARMQAEIKKLSAEVESLkeAYHMEMISH-------QENHAK--------WKISADSQKSSVQQLNE 1254
Cdd:TIGR00618 663 -HALSIRVLPKELLASRQLALQKMQSEKEQL--TYWKEMLAQcqtllreLETHIEeydrefneIENASSSLGSDLAARED 739
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 807045883 1255 QLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1300
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
905-1313 |
7.24e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 7.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 905 DMILDQTKTElEKKTNAVKELEKLqHSTETELTEALQKREVLE--TELQNAHGELKSTLRQLQELRDVL-----QKAQLS 977
Cdd:COG4913 215 EYMLEEPDTF-EAADALVEHFDDL-ERAHEALEDAREQIELLEpiRELAERYAAARERLAELEYLRAALrlwfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 978 LEEKYTT----IKDLTAELRECKMEIEDKKQELLEMDQALKERNW----ELKQRAAQVTHLDMTIREHRGEMEQKIIKLE 1049
Cdd:COG4913 293 LEAELEElraeLARLEAELERLEARLDALREELDELEAQIRGNGGdrleQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1050 GTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFimlQNEQEISQLKKEIERTQQRMKEMES---------------- 1113
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALA---EAEAALRDLRRELRELEAEIASLERrksniparllalrdal 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1114 -------------------VMKEQ-------EQYI----------------ATQYKEAIDLGQELRLTREQVQNSHTELA 1151
Cdd:COG4913 450 aealgldeaelpfvgelieVRPEEerwrgaiERVLggfaltllvppehyaaALRWVNRLHLRGRLVYERVRTGLPDPERP 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1152 EARHQQVQAQREIER------LSSEL---------EDMKQLSKEKDA-------HGNHLAEE------------LGAS-K 1196
Cdd:COG4913 530 RLDPDSLAGKLDFKPhpfrawLEAELgrrfdyvcvDSPEELRRHPRAitragqvKGNGTRHEkddrrrirsryvLGFDnR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1197 VREAHLEARM---QAEIKKLSAEVESLKEAYHmEMISHQENHAKWK------ISADSQKSSVQQLNEQLEkaklELEEAQ 1267
Cdd:COG4913 610 AKLAALEAELaelEEELAEAEERLEALEAELD-ALQERREALQRLAeyswdeIDVASAEREIAELEAELE----RLDASS 684
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 807045883 1268 DTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAED 1313
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
953-1173 |
7.66e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 7.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 953 AHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDM 1032
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1033 TIREHRGEMEQKIIKLEGTLEKSELEL---KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1109
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 807045883 1110 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNshtELAEARHQQVQAQREIERLSSELED 1173
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAA---ELAELQQEAEELEALIARLEAEAAA 238
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
947-1154 |
8.96e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 8.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 947 ETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAA- 1025
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARa 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1026 ------QVTHLDM------------------TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1081
Cdd:COG3883 95 lyrsggSVSYLDVllgsesfsdfldrlsalsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 807045883 1082 EKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR 1154
Cdd:COG3883 175 AQ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
803-1280 |
1.04e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 803 TIRNGELEDTQTKLEKQVSKLEQELQKQR-ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVK-IEMDQYKEEL 880
Cdd:COG4913 268 RERLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREI 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 881 SKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEkktNAVKELEKLQHSTETELTEALQKRevleTELQNAHGELKST 960
Cdd:COG4913 348 ERLERELEERERRRARLEALLAALGLPLPASAEEFA---ALRAEAAALLEALEEELEALEEAL----AEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 961 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAElrECKMEIEDKK--QELLEMDQalKERNWEL----------------KQ 1022
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAE--ALGLDEAELPfvGELIEVRP--EEERWRGaiervlggfaltllvpPE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1023 RAAQV------THLDMTIREHRGEMEQKIIKLEGTLEKS---ELELKEcNKQIESLNDKLQ------------------- 1074
Cdd:COG4913 497 HYAAAlrwvnrLHLRGRLVYERVRTGLPDPERPRLDPDSlagKLDFKP-HPFRAWLEAELGrrfdyvcvdspeelrrhpr 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1075 -----------------NAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1137
Cdd:COG4913 576 aitragqvkgngtrhekDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1138 LTREQVqnshtELAEARHQQVQAQREIERL---SSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLE---ARMQAEIK 1211
Cdd:COG4913 656 YSWDEI-----DVASAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEkelEQAEEELD 730
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 1212 KLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDR 1280
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
813-1208 |
1.27e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 53.21 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 813 QTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 892
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 893 DGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREvletELQNAHGELKSTLRQLQELRDVLQ 972
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE----ELQERLDLLKAKASEAEQLRQNLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 973 KAQLSLEEKYTTIKDLTAELR---ECKMEIEDKKQELLEMDQALKernwELKQRAAQVTHLDMTIR-------------- 1035
Cdd:pfam05557 160 KQQSSLAEAEQRIKELEFEIQsqeQDSEIVKNSKSELARIPELEK----ELERLREHNKHLNENIEnklllkeevedlkr 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1036 --EHRGEMEQKIIKLEGTLEKSELELKECNK-----------------QIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1096
Cdd:pfam05557 236 klEREEKYREEAATLELEKEKLEQELQSWVKlaqdtglnlrspedlsrRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1097 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQReIERLSSELEDMKQ 1176
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLER-IEEAEDMTQKMQA 394
|
410 420 430
....*....|....*....|....*....|..
gi 807045883 1177 LSKEKDAHGNHLAEELGASKVREAHLEARMQA 1208
Cdd:pfam05557 395 HNEEMEAQLSVAEEELGGYKQQAQTLERELQA 426
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
808-1027 |
1.50e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 808 ELEDTQTKLEKQVSKLEQeLQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEI 887
Cdd:COG4942 28 ELEQLQQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 888 MHLKRDGEnKAMHLSQLDMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQE 966
Cdd:COG4942 107 AELLRALY-RLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 807045883 967 LRDVLQKAQlslEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 1027
Cdd:COG4942 186 ERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1047-1211 |
1.66e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 52.47 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1047 KLEGTLEKSELELKECNKQIESLN-DKLQNAKEQLREKEfimLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQ 1125
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKkEALLEAKEEIHKLR---NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1126 YKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE------LEDMKQLSKEkDAhgnhlaeelgASKVRE 1199
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakeilLEKVEEEARH-EA----------AVLIKE 177
|
170
....*....|..
gi 807045883 1200 AHLEARMQAEIK 1211
Cdd:PRK12704 178 IEEEAKEEADKK 189
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
478-1216 |
2.24e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.42 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 478 QESSKLSSLETEPVKLGGHQVESVKD---QNQHTMNKQYEKerqrLVTGIEELRTKLIQIEAE----NSDLKVNMAHRTS 550
Cdd:pfam05483 42 QKLNFLPMLEQVANSGDCHYQEGLKDsdfENSEGLSRLYSK----LYKEAEKIKKWKVSIEAElkqkENKLQENRKIIEA 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 551 QFQLIQEELLEKASNSSKLESEMTKKcSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIC 630
Cdd:pfam05483 118 QRKAIQELQFENEKVSLKLEEEIQEN-KDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMI 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 631 LAFE----KAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKenmk 706
Cdd:pfam05483 197 LAFEelrvQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQ---- 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 707 KDEALKALQNQVSEETIKVRQLDSALEickeELVLHLNQLEGNKEKFEKQLKKKSEEVYCL--QKELKIKNHSLQETSEQ 784
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELE----DIKMSLQRSMSTQKALEEDLQIATKTICQLteEKEAQMEELNKAKAAHS 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 785 NVILQHTLQQQQQMLQQETIRN------GELEDTQTKLEKQVSKLEQ--ELQKQRESSAEKLRKMEEKCESAAHEADLKR 856
Cdd:pfam05483 349 FVVTEFEATTCSLEELLRTEQQrlekneDQLKIITMELQKKSSELEEmtKFKNNKEVELEELKKILAEDEKLLDEKKQFE 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 857 QKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLdmildqtKTELEKKTNAVKELEKLQHSTETEL 936
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL-------KTELEKEKLKNIELTAHCDKLLLEN 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 937 TEALQKREVLETELQNAHGELKSTLRQLQELRDVLQkaqlSLEEKYTTIKDltaelreckmEIEDKKQELLEMDQALKER 1016
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE----NLEEKEMNLRD----------ELESVREEFIQKGDEVKCK 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1017 NWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1096
Cdd:pfam05483 568 LDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELAS 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1097 LKKEIER-TQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAE----ARHQQVQAQREIERLSSEL 1171
Cdd:pfam05483 648 AKQKFEEiIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEmvalMEKHKHQYDKIIEERDSEL 727
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 807045883 1172 EDMKqlSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAE 1216
Cdd:pfam05483 728 GLYK--NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKE 770
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
872-1084 |
2.36e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 872 EMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQ 951
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 952 NAHGELKSTLRQLQELRD-------VLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRA 1024
Cdd:COG4942 101 AQKEELAELLRALYRLGRqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1025 AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKE 1084
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
478-1267 |
2.41e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 2.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 478 QESSKLSSLETEPVKLGGHQVESVKDQNQHTMnKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQE 557
Cdd:TIGR00606 283 KDNSELELKMEKVFQGTDEQLNDLYHNHQRTV-REKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 558 ELLEKASNSSKLESEmtkkcSQLLTLEKQleekivAYSSIAAKNA-ELEQELMEknEKIRSLETNINTEHEKICLAFEKA 636
Cdd:TIGR00606 362 HIRARDSLIQSLATR-----LELDGFERG------PFSERQIKNFhTLVIERQE--DEAKTAAQLCADLQSKERLKQEQA 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 637 KKIHLEQhKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQ---QDIICKQHHLESLDRLLTESKGEMKKENMKKDEalKA 713
Cdd:TIGR00606 429 DEIRDEK-KGLGRTIELKKEILEKKQEELKFVIKELQQLEgssDRILELDQELRKAERELSKAEKNSLTETLKKEV--KS 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 714 LQNQVSEETIKVRQLDSALEickeelvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKIK-NHSLQETSEQNVILQHTL 792
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEME-----------QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKsRHSDELTSLLGYFPNKKQ 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 793 QQQQQMLQQETIRngELEDTQTKLEKQVSKLEQ---ELQKQRESSAEKLRKMEEK----CESAAHEADLKRQKViELTGT 865
Cdd:TIGR00606 575 LEDWLHSKSKEIN--QTRDRLAKLNKELASLEQnknHINNELESKEEQLSSYEDKlfdvCGSQDEESDLERLKE-EIEKS 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 866 ARQVKI------EMDQYKEELSKMEKEIMHL-KRDGENKAmhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTE 938
Cdd:TIGR00606 652 SKQRAMlagataVYSQFITQLTDENQSCCPVcQRVFQTEA----ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDE 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 939 ALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-QELLEMDQALKERN 1017
Cdd:TIGR00606 728 MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTiMERFQMELKDVERK 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1018 WELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELK---ECNKQIESLNDK---LQNAKEQLREKEFIMLQNE 1091
Cdd:TIGR00606 808 IAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKliqDQQEQIQHLKSKtneLKSEKLQIGTNLQRRQQFE 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1092 QEISQLKKEIERTQQRMKE-----------MESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAE-------- 1152
Cdd:TIGR00606 888 EQLVELSTEVQSLIREIKDakeqdspletfLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDienkiqdg 967
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1153 ARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARM-----QAEIKKLSAEVES-LKEAYHM 1226
Cdd:TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLtlrkrENELKEVEEELKQhLKEMGQM 1047
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 807045883 1227 EMISHQENHAKWKISADSQKSS-------VQQLNEQLEKAKLELEEAQ 1267
Cdd:TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNhvlalgrQKGYEKEIKHFKKELREPQ 1095
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
878-1265 |
2.64e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 878 EELSKMEKEIMHLKrDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGEL 957
Cdd:PRK03918 145 ESREKVVRQILGLD-DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 958 ---KSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNwELKQRAAQVthldMTI 1034
Cdd:PRK03918 224 eklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEY----IKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1035 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqneqeisQLKKEIERTQQRMKEMESV 1114
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK-----------ELEKRLEELEERHELYEEA 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1115 MKEQEQyiATQYKEaidlgqelRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGA 1194
Cdd:PRK03918 368 KAKKEE--LERLKK--------RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 1195 SKV--------REAHLEARMQAEIKKLSAEVESLKEAyhMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1265
Cdd:PRK03918 438 CPVcgrelteeHRKELLEEYTAELKRIEKELKEIEEK--ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
511-1045 |
3.96e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 511 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 590
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 591 ---IVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIhLEQHKEMEKQIERLEAQLEKKDQQFKE 667
Cdd:TIGR04523 214 kslESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI-KKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 668 QEKTMSMLQQDiicKQHHLESldrllteskgEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELvlhlNQLE 747
Cdd:TIGR04523 293 LKSEISDLNNQ---KEQDWNK----------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL----TNSE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 748 GNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQEL 827
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 828 QKQRE---SSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHL---KRDGENKAMHL 901
Cdd:TIGR04523 436 IKNNSeikDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLneeKKELEEKVKDL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 902 ----SQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLE-----TELQNAHGELKSTLRQLQELRDVLQ 972
Cdd:TIGR04523 516 tkkiSSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEknkeiEELKQTQKSLKKKQEEKQELIDQKE 595
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 807045883 973 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKI 1045
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKI 668
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
190-829 |
4.51e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 4.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 190 REAENKLEQSQkmviEKEQSLQeskeeciklkvDLL-EQTKQGKRAERQRNEALyNAEELSKAFQQYKKKV-AEKLEKVQ 267
Cdd:COG1196 175 EEAERKLEATE----ENLERLE-----------DILgELERQLEPLERQAEKAE-RYRELKEELKELEAELlLLKLRELE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 268 AEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRimavknsEVMAQLTESRQSIlklESEL 347
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-------ELLAELARLEQDI---ARLE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 348 ENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELfgfksylskyQMSSFSNKE 427
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE----------AEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 428 DrcigccEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQh 507
Cdd:COG1196 379 E------ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE- 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 508 tmnKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLE--------KASNSSKLESEMTKKCSQ 579
Cdd:COG1196 452 ---AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegflegvKAALLLAGLRGLAGAVAV 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 580 LLTLEKQLEEKIVAYSSIAAKNAELEQELMEKnEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQ-----IERL 654
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAA-AAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGaavdlVASD 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 655 EAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSAlei 734
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL--- 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 735 cKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQT 814
Cdd:COG1196 685 -AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
650
....*....|....*
gi 807045883 815 KLEKQVSKLEQELQK 829
Cdd:COG1196 764 ELERELERLEREIEA 778
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
592-1225 |
4.54e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 4.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 592 VAYSSIAAKNAELEQELMEkneKIRSLETNINTEhEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKT 671
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEK---KLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 672 MSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEAlKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKE 751
Cdd:TIGR04523 98 INKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKEN-KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 752 KFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLeQELQKQR 831
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI-SNTQTQL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 832 ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEE-----LSKMEKEIMHLKRDGENKAMHLSQLDM 906
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNK 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 907 ILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIK 986
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 987 DLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTirehRGEMEQKIIKLEGTLEKSELELKECNKQI 1066
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT----RESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1067 ESLNDKLQNAKEQLRekefimlQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQElrLTREQVQNS 1146
Cdd:TIGR04523 492 KSKEKELKKLNEEKK-------ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE--LKKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1147 HTELAEARHQQVQAQREIERLSSEL-EDMKQLSKEKDAHGNHLAEELGASKVREAHLEaRMQAEIKKLSAEVESLKEAYH 1225
Cdd:TIGR04523 563 IDEKNKEIEELKQTQKSLKKKQEEKqELIDQKEKEKKDLIKEIEEKEKKISSLEKELE-KAKKENEKLSSIIKNIKSKKN 641
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
908-1120 |
4.59e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 908 LDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD 987
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 988 LTAELreCKMEIEDKKQELL---------EMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELE 1058
Cdd:COG4942 109 LLRAL--YRLGRQPPLALLLspedfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 807045883 1059 LKECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKEIERTQQRMKEMESVMKEQEQ 1120
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELA-------AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
114-922 |
4.67e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 4.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 114 KSLREKLNKLRQQNACLVTQNHSLMTKFESIHfELTQSRAKVSMLESAQQQAAsvpilEEQIINLEAEVSAQDKVLREAE 193
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKENKEEEKEK-KLQEEELKLLAKEEEELKSE-----LLKLERRKVDDEEKLKESEKEK 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 194 NKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEIL 273
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 274 ERNLtncekenkrlqercglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEI 353
Cdd:pfam02463 404 EKEA-----------------QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 354 LRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKII---SQLPLKRELFGFKSYLSKYQMSSFSNKEDRC 430
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLlalIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 431 IGCCEANKLVIselRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMN 510
Cdd:pfam02463 547 TAVIVEVSATA---DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 511 KQYEKERQRLVTGIEELRTKLI---QIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQL 587
Cdd:pfam02463 624 VVEGILKDTELTKLKESAKAKEsglRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKK 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 588 EEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIhleQHKEMEKQIERLEAQLEKKDQQFKE 667
Cdd:pfam02463 704 KEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS---RLKKEEKEEEKSELSLKEKELAEER 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 668 QEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLE 747
Cdd:pfam02463 781 EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 860
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 748 GNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQEL 827
Cdd:pfam02463 861 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 828 QKQRESSAEklrKMEEKCESAAHEADLKRQKVIELTgtaRQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 907
Cdd:pfam02463 941 LLEEADEKE---KEENNKEEEEERNKRLLLAKEELG---KVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
810
....*....|....*
gi 807045883 908 LDQTKTELEKKTNAV 922
Cdd:pfam02463 1015 TCQRLKEFLELFVSI 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1035-1311 |
5.31e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1035 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLN------DKLQNAKEQLREKEFIMLQNEqeISQLKKEIERTQQRM 1108
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLVLR--LEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1109 KEMESVMKEQEQYIATqykeaidLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLsselEDMKQLSKEKDAHGNHL 1188
Cdd:TIGR02168 249 KEAEEELEELTAELQE-------LEEKLEELRLEVSELEEEIEELQKELYALANEISRL----EQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1189 AEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWkisadsqkssvQQLNEQLEKAKLELEEAQD 1268
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-----------EELESRLEELEEQLETLRS 386
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 807045883 1269 TVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKA 1311
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
513-994 |
6.16e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 6.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 513 YEKERQRLVT---GIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTkkcsqllTLEKQLEE 589
Cdd:PRK02224 246 HEERREELETleaEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE-------AVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 590 kivayssIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHlEQHKEMEKQIERLEAQLEKKDQQFKEQE 669
Cdd:PRK02224 319 -------LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR-EEAAELESELEEAREAVEDRREEIEELE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 670 KTMSMLQQ---DIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEEtikvRQLDSA-------LEICKEEL 739
Cdd:PRK02224 391 EEIEELRErfgDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA----EALLEAgkcpecgQPVEGSPH 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 740 VLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKiKNHSLQETSEQnvILQHTLQQQQQMLQQETIRNG--ELEDTQTKLE 817
Cdd:PRK02224 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLE-RAEDLVEAEDR--IERLEERREDLEELIAERRETieEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 818 KQVSKLEQELQKQRESSAEklrkmeekcesAAHEADLKRQKVIELTGTARQVKIEMDQYkEELSKMEKEIMHLKRDGENK 897
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAE-----------AEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERL 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 898 AMHLSQLDMILDQTKTELEKKTNAVKEL---------EKLQHSTET------ELTEALQKREVLETELQNAHGELKSTLR 962
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKRELeaefdeariEEAREDKERaeeyleQVEEKLDELREERDDLQAEIGAVENELE 691
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 807045883 963 QLQELRD---VLQKAQLSLEEKY-------TTIKDLTAELRE 994
Cdd:PRK02224 692 ELEELRErreALENRVEALEALYdeaeeleSMYGDLRAELRQ 733
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
754-1297 |
8.59e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 50.59 E-value: 8.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 754 EKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTlqqqqqmlqqetirngELEDTQ-TKLEKQVSKLEQELQKQRE 832
Cdd:pfam10174 198 EVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVI----------------EMKDTKiSSLERNIRDLEDEVQMLKT 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 833 SSaekLRKMEEkcesaaHEADLKRQKVIEltGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 912
Cdd:pfam10174 262 NG---LLHTED------REEEIKQMEVYK--SHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 913 TELEKKTNAVKELEKLQHSTETELTEA---LQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKyttIKDLT 989
Cdd:pfam10174 331 ESLTAKEQRAAILQTEVDALRLRLEEKesfLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKK---IENLQ 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 990 AELReckmeieDKKQELLEmdqaLKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEgtlEKSELELKECNKQIESL 1069
Cdd:pfam10174 408 EQLR-------DKDKQLAG----LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLK---EQREREDRERLEELESL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1070 NDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTRE-------- 1141
Cdd:pfam10174 474 KKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNaeeavrtn 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1142 -----QVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLaeelgASKVREAHLEARMQAEIKKLSAE 1216
Cdd:pfam10174 554 peindRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAEL-----ESLTLRQMKEQNKKVANIKHGQQ 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1217 VESLKEAYHMEMISHQENHAKwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRN--------------- 1281
Cdd:pfam10174 629 EMKKKGAQLLEEARRREDNLA----DNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDghltnlraerrkqle 704
|
570
....*....|....*.
gi 807045883 1282 EVIEAANEALLTKESE 1297
Cdd:pfam10174 705 EILEMKQEALLAAISE 720
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
111-1001 |
8.73e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 8.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 111 QEIKSLREKLNKLRQ----QNACLVTQNHSLMTKFESIHFElTQSRAKVSMLESaQQQAASVPILEEQIINLEAEVSAQD 186
Cdd:pfam15921 85 HQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRES-QSQEDLRNQLQNTVHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 187 KVLREAENKLEQSQKMVIEKEQSLQESKeeciKLKVDLLEQTkqGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKV 266
Cdd:pfam15921 163 DMLEDSNTQIEQLRKMMLSHEGVLQEIR----SILVDFEEAS--GKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 267 QAEEEILERNLTNCEKENK------------RLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAV----KNSEVM 330
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQnkielllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnQNSMYM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 331 AQLTESRQSILKLESELENKDEILRDKFslmnenRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFG 410
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDKI------EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 411 FKSYLSKYQMSSFSNKEdrcigccEANKLVISELRIKLAIKEAEIQKLHANLTA------NQLSQSLITCNDSQES-SKL 483
Cdd:pfam15921 391 KELSLEKEQNKRLWDRD-------TGNSITIDHLRRELDDRNMEVQRLEALLKAmksecqGQMERQMAAIQGKNESlEKV 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 484 SSLetepvklgghqvesvkdqnqhtmNKQYEKERQRLVTGIEELRTKLIQIEAEN---SDLKVNMAHRTSQFQLIQEELl 560
Cdd:pfam15921 464 SSL-----------------------TAQLESTKEMLRKVVEELTAKKMTLESSErtvSDLTASLQEKERAIEATNAEI- 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 561 ekasnsSKLESEMTKKCSQLLTLEKQLEEkivaYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIclafekakkih 640
Cdd:pfam15921 520 ------TKLRSRVDLKLQELQHLKNEGDH----LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLV----------- 578
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 641 lEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDiicKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSE 720
Cdd:pfam15921 579 -GQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK---KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQE 654
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 721 ETikvrQLDSALEICKEElvlhLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlq 800
Cdd:pfam15921 655 RD----QLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT--------------- 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 801 QETIRNGELEDTQT-KLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEE 879
Cdd:pfam15921 712 RNTLKSMEGSDGHAmKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 880 LSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELeKLQHSTETELTE--------ALQKREVLETELQ 951
Cdd:pfam15921 792 LEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL-KLQHTLDVKELQgpgytsnsSMKPRLLQPASFT 870
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|
gi 807045883 952 NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1001
Cdd:pfam15921 871 RTHSNVPSSQSTASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPT 920
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1040-1223 |
8.87e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 8.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1040 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1119
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1120 -------------------------QYIATQYKEAID----LGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE 1170
Cdd:COG3883 100 gsvsyldvllgsesfsdfldrlsalSKIADADADLLEelkaDKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 807045883 1171 LED-MKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1223
Cdd:COG3883 180 QEAlLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
849-1207 |
8.91e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 8.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 849 AHEADLKRQKVI----ELTGTARQVKIEMDQYKE---ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTktelEKKTNA 921
Cdd:COG3096 277 ANERRELSERALelrrELFGARRQLAEEQYRLVEmarELEELSARESDLEQDYQAASDHLNLVQTALRQQ----EKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 922 VKELEKL------QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQ-------KAQLSLEE--KYTTIK 986
Cdd:COG3096 353 QEDLEELterleeQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyqQAVQALEKarALCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 987 DLTAElreckmEIEDKKQELLEMDQALKERNWELKQRAAQVthlDMTIREHRGEMeQKIIKLEGTLEKSelelkecnkqi 1066
Cdd:COG3096 433 DLTPE------NAEDYLAAFRAKEQQATEEVLELEQKLSVA---DAARRQFEKAY-ELVCKIAGEVERS----------- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1067 eslnDKLQNAKEQLRE-KEFIML-QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQ 1144
Cdd:COG3096 492 ----QAWQTARELLRRyRSQQALaQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLE 567
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 1145 NSHTELAEARHQQVQAQREIERLSselEDMKQLSK------EKDAHGNHLAEELGASKVREAHLEARMQ 1207
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLR---ARIKELAArapawlAAQDALERLREQSGEALADSQEVTAAMQ 633
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
939-1173 |
1.14e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 939 ALQKREVLETE---LQNAHGELKSTLRQLQELRDVLQKAQLS---LEEKYTTIKDLTAELRECkMEIEDKKQELLEMDQA 1012
Cdd:COG4913 608 NRAKLAALEAElaeLEEELAEAEERLEALEAELDALQERREAlqrLAEYSWDEIDVASAEREI-AELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1013 LKernwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1092
Cdd:COG4913 687 LA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1093 EISQLKKEIERTQQRMKEM-----ESVMKEQEQYIATQYKEAIDLGQELRlTREQVQNSHTELAE---ARHQQ------- 1157
Cdd:COG4913 763 VERELRENLEERIDALRARlnraeEELERAMRAFNREWPAETADLDADLE-SLPEYLALLDRLEEdglPEYEErfkelln 841
|
250
....*....|....*.
gi 807045883 1158 VQAQREIERLSSELED 1173
Cdd:COG4913 842 ENSIEFVADLLSKLRR 857
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
907-1290 |
1.25e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 907 ILDQTKTELEKKTNAVKELEklqhstETELTEALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSL---EEKYT 983
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKE------EKDLHERLNG---LESELAELDEEIERYEEQREQARETRDEADEVLeehEERRE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 984 TIKDLTAELRECKMEIEDKKQEllemDQALKERnwelkqraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKEcN 1063
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETERE----REELAEE-----------------VRDLRERLEELEEERDDLLAEAGLDDAD-A 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1064 KQIESLNDKLQNAKEQLREKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQyiatqykEAIDLGQELRLTREQV 1143
Cdd:PRK02224 310 EAVEARREELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEELRE-------EAAELESELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1144 QNSHTELAEARhqqvqaqREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQaEIKKLSAEVESLKEA 1223
Cdd:PRK02224 380 EDRREEIEELE-------EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR-TARERVEEAEALLEA 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 807045883 1224 YHMEMISHQenhakwkISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEA 1290
Cdd:PRK02224 452 GKCPECGQP-------VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI 511
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
935-1303 |
1.48e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 935 ELTEALQKREVLETELQNAHGEL---KSTLRQ----------LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1001
Cdd:COG3096 314 ELEELSARESDLEQDYQAASDHLnlvQTALRQqekieryqedLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1002 KKQELLEMDQALKErnweLKQRAAQVthldmtirehrgemeQKIIKlegTLEKSELELKECNKQIESLNDKLQNAKEQLR 1081
Cdd:COG3096 394 LKSQLADYQQALDV----QQTRAIQY---------------QQAVQ---ALEKARALCGLPDLTPENAEDYLAAFRAKEQ 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1082 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQY-KEAIDLGQELRLTREQVQNSHTELAEARhQQVQA 1160
Cdd:COG3096 452 QATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTaRELLRRYRSQQALAQRLQQLRAQLAELE-QRLRQ 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1161 QREIERLSSELEdmKQLSKEKDAhgnhlAEELgaskvreAHLEARMQAEIKKLSAEVESLKEAyHMEMiSHQENHAKWKI 1240
Cdd:COG3096 531 QQNAERLLEEFC--QRIGQQLDA-----AEEL-------EELLAELEAQLEELEEQAAEAVEQ-RSEL-RQQLEQLRARI 594
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 807045883 1241 SADSQKSSV------------QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEvIEAANEALltkESELTRLQA 1303
Cdd:COG3096 595 KELAARAPAwlaaqdalerlrEQSGEALADSQEVTAAMQQLLEREREATVERDE-LAARKQAL---ESQIERLSQ 665
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
934-1207 |
1.53e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 934 TELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD--------LTAELRECKMEIEDKKQE 1005
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqwkekrdeLNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1006 LLEMD-QALKERNWELKQRAAQVTHLDmTIREHRGEMEQKIIKLEGTLEKSELELK--------ECNKQIESLNDKLQNA 1076
Cdd:pfam12128 324 LEALEdQHGAFLDADIETAAADQEQLP-SWQSELENLEERLKALTGKHQDVTAKYNrrrskikeQNNRDIAGIKDKLAKI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1077 KEQL-REKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELrltrEQVQNSHTELAEARH 1155
Cdd:pfam12128 403 REARdRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELL----LQLENFDERIERARE 478
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 807045883 1156 QQVQAQREIERLSSELEDMKQLSKEKDAHgnHLAEELGASKVREAHLEARMQ 1207
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEA--LRQASRRLEERQSALDELELQ 528
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
816-1291 |
1.67e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 816 LEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGE 895
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 896 NKAMH--LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQK 973
Cdd:COG4717 127 LLPLYqeLEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 974 AQLSLEEKYTTIKDLTAELREcKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK--------- 1044
Cdd:COG4717 207 RLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1045 IIKLEGTLEKSELELKECNKQIESLN--DKLQNA--KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQ 1120
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPalEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1121 yiatqykeaIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMkqlskekdahgnhLAEELGASKVR-E 1199
Cdd:COG4717 366 ---------EELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ-------------LEELLGELEELlE 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1200 AHLEARMQAEIKKLSAEVESLKEayHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE----------AQDT 1269
Cdd:COG4717 424 ALDEEELEEELEELEEELEELEE--ELEELREELAELEAELEQLEEDGELAELLQELEELKAELRElaeewaalklALEL 501
|
490 500
....*....|....*....|....
gi 807045883 1270 VSNLHQQVQDRN--EVIEAANEAL 1291
Cdd:COG4717 502 LEEAREEYREERlpPVLERASEYF 525
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
935-1284 |
1.88e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 935 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK 1014
Cdd:pfam07888 42 ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1015 ERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR------------- 1081
Cdd:pfam07888 122 AQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRslskefqelrnsl 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1082 -EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKE----QEQYIATQYKEAIdLGQELRLTREQVQNSHTELAEARHQ 1156
Cdd:pfam07888 202 aQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEElrslQERLNASERKVEG-LGEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1157 QVQAQREIERLSSEL-EDMKQLSKEKDAhgnhLAEELGASKVReahlearmqaeIKKLSAEVESLKEAYHMEMISHQENH 1235
Cdd:pfam07888 281 AAQLTLQLADASLALrEGRARWAQERET----LQQSAEADKDR-----------IEKLSAELQRLEERLQEERMEREKLE 345
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 807045883 1236 AKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVI 1284
Cdd:pfam07888 346 VELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
147-936 |
1.90e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 147 ELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:pfam02463 220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 227 QTK-QGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKL 305
Cdd:pfam02463 300 SELlKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 306 RQLKEENNNGKEKLRIMA------VKNSEVMAQLTESRQSILKLE--SELENKDEILRDKFSLMNENRELKVRVAAQNER 377
Cdd:pfam02463 380 KLESERLSSAAKLKEEELelkseeEKEAQLLLELARQLEDLLKEEkkEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 378 LDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQK 457
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 458 LHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAE 537
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDD 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 538 NSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYsSIAAKNAELEQELMEKNEKIRS 617
Cdd:pfam02463 620 KRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL-EIQELQEKAESELAKEEILRRQ 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 618 LETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIE-RLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTES 696
Cdd:pfam02463 699 LEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKiNEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 697 KGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNH 776
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 777 SLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKR 856
Cdd:pfam02463 859 LEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 857 QKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETEL 936
Cdd:pfam02463 939 ELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
750-1040 |
2.39e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.70 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 750 KEKFEKQLKKKSEEVyclqKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 829
Cdd:COG2433 349 KNKFERVEKKVPPDV----DRDEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 830 QRESSAEKLRKMEEKCESAAH-EADLKRqkvieltgtARQVKIEMDQYKEELSKMEKEIMHLKRDgenkamhLSQLDMIL 908
Cdd:COG2433 425 LEAEVEELEAELEEKDERIERlERELSE---------ARSEERREIRKDREISRLDREIERLERE-------LEEERERI 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 909 DqtktELEKKTNAVKELEKLQHSTETELT---EALQKREVLETE------------LQNAHGELKSTLRQLQEL--RDVL 971
Cdd:COG2433 489 E----ELKRKLERLKELWKLEHSGELVPVkvvEKFTKEAIRRLEeeyglkegdvvyLRDASGAGRSTAELLAEAgpRAVI 564
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 807045883 972 QKAQLSlEEKYTTIKDLT-AELRECKMEIEDK------KQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGE 1040
Cdd:COG2433 565 VPGELS-EAADEVLFEEGiPVLPAEDVTIQEVddlavvDEEELEAAIEDWEERAEERRREKKAEMLERLISEYRAE 639
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
908-1112 |
2.51e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 908 LDQTKTELEKKTNAVKELeKLQH---STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyTT 984
Cdd:COG3206 184 LPELRKELEEAEAALEEF-RQKNglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE--LL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 985 IKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREhrgEMEQKIIKLEGTLEKSELELKECNK 1064
Cdd:COG3206 261 QSPVIQQLRA---QLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQA 334
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 807045883 1065 QIESLNDKLQNAKEQlrEKEFIMLQNEQEISQlkKEIERTQQRMKEME 1112
Cdd:COG3206 335 QLAQLEARLAELPEL--EAELRRLEREVEVAR--ELYESLLQRLEEAR 378
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
232-1094 |
2.83e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTnCEKENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLL-YLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 312 NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLdlcQQEIESSRVE 391
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA---EKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 392 LRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIgcceaNKLVISELRIKLAIKEAEIQKLHANLTANQlSQSL 471
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELL-----AKKKLESERLSSAAKLKEEELELKSEEEKE-AQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 472 ITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQ 551
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 552 FQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICL 631
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRAL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 632 AFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLEsldrlLTESKGEMKKENMKKDEAL 711
Cdd:pfam02463 571 TELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE-----GILKDTELTKLKESAKAKE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 712 KALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHT 791
Cdd:pfam02463 646 SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLAD 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 792 LQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVieltgtaRQVKI 871
Cdd:pfam02463 726 RVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKE-------EKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 872 EMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQ 951
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 952 NAHGELKstlRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLD 1031
Cdd:pfam02463 879 LEEQKLK---DELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 807045883 1032 MTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEI 1094
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
170-348 |
2.96e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 170 ILEEQIINLEAEVsaqDKVLREAENKLEQsqkmviEKEQSLQESKEECIKLKvdlleqtkqgkraerqrnealynaEELS 249
Cdd:PRK12704 28 IAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLR------------------------NEFE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 250 KAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLrimavknsEV 329
Cdd:PRK12704 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL--------ER 146
|
170 180
....*....|....*....|..
gi 807045883 330 MAQLT--ESRQSIL-KLESELE 348
Cdd:PRK12704 147 ISGLTaeEAKEILLeKVEEEAR 168
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
564-1112 |
3.04e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.74 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 564 SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIrsleTNINTEHEKICLAFEKAKKIHLEQ 643
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDY----NNLKSALNELSSLEDMKNRYESEI 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 644 hkemeKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHH-----------LESLDRLLTESKGEMKK--ENMKKDEA 710
Cdd:PRK01156 259 -----KTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNyindyfkykndIENKKQILSNIDAEINKyhAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 711 LKALQNQVSEETIKvrqldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSeevyclQKELKIKNHSLQETSEQNVILQH 790
Cdd:PRK01156 334 LQKDYNDYIKKKSR-----------YDDLNNQILELEGYEMDYNSYLKSIE------SLKKKIEEYSKNIERMSAFISEI 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 791 TLQQQQQMLQQETIRNgELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEkcesaaheadLKRQKVIELTGT---AR 867
Cdd:PRK01156 397 LKIQEIDPDAIKKELN-EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEM----------LNGQSVCPVCGTtlgEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 868 QVKIEMDQYKEELSKMEKEIMHLKRDG---ENKAMHLSQLDMILDqtKTELEKKTNAVKELEKLQHS------TETELTE 938
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEVkdiDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADledikiKINELKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 939 ALQKREVLETELQNAH-GELKSTLRQLQELRDV-----LQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-------QE 1005
Cdd:PRK01156 544 KHDKYEEIKNRYKSLKlEDLDSKRTSWLNALAVislidIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKsyidksiRE 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1006 LLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK--IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK 1083
Cdd:PRK01156 624 IENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLEST 703
|
570 580
....*....|....*....|....*....
gi 807045883 1084 EFIMLQNEQEISQLKKEIERTQQRMKEME 1112
Cdd:PRK01156 704 IEILRTRINELSDRINDINETLESMKKIK 732
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
709-1112 |
5.01e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 5.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 709 EALKALQNQVSEETIKVRQLdsaleickEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVIL 788
Cdd:COG4717 71 KELKELEEELKEAEEKEEEY--------AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 789 QHTLQQQQQMLQQETIRngELEDTQTKLEKQVSKLEQEL----QKQRESSAEKLRKMEEKCESAaheadlkRQKVIELTG 864
Cdd:COG4717 143 ELPERLEELEERLEELR--ELEEELEELEAELAELQEELeellEQLSLATEEELQDLAEELEEL-------QQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 865 TARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDM------------------------------------IL 908
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllsliltiagvlflvlgllallflLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 909 DQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYtTIKDL 988
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE-LEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 989 TAELRECKMEIEDKKQELLEMDQalkernwELKQRAAQVTHLDMTIREHRGEMEQKIikLEGTLEKSELELKECNKQIES 1068
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAE-------EYQELKEELEELEEQLEELLGELEELL--EALDEEELEEELEELEEELEE 443
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 807045883 1069 LNDKLQNAKEQLREKEFIM--LQNEQEISQLKKEIERTQQRMKEME 1112
Cdd:COG4717 444 LEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELRELA 489
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1035-1132 |
5.11e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1035 REHRGEMEQKIIKLEGTLEK-----SEL--ELKECNKQIESLNDKLQNAKEQLREKefimLQNEQEISQLKKEIERTQQR 1107
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERleaevEELeaELEEKDERIERLERELSEARSEERRE----IRKDREISRLDREIERLERE 480
|
90 100
....*....|....*....|....*
gi 807045883 1108 MKEMESVMKEQEQYIAtQYKEAIDL 1132
Cdd:COG2433 481 LEEERERIEELKRKLE-RLKELWKL 504
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
562-1222 |
5.27e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 562 KASNSSKLESEMTKKCSQLLTLEkqLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI--CLAFEKAKKI 639
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLC--TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQeeQLKKQQLLKQ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 640 HLEQHKEMEKQIERLEAQLEKKDQQFKEQEktmsmlqqdIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVS 719
Cdd:TIGR00618 265 LRARIEELRAQEAVLEETQERINRARKAAP---------LAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 720 EEtikvrqldSALEICKEELVLHLNQLEGNKEKFEKQLKKKseEVYCLQKELKIKNHSLQETSEqnvilqhTLQQQQQML 799
Cdd:TIGR00618 336 QQ--------SSIEEQRRLLQTLHSQEIHIRDAHEVATSIR--EISCQQHTLTQHIHTLQQQKT-------TLTQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 800 QQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVK--IEMDQYK 877
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKerEQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 878 EELSKMEKEImhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTEALQKREVLETELQNAHGEL 957
Cdd:TIGR00618 479 EQIHLQETRK---KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT----RRMQRGEQTYAQLETSEEDVYHQL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 958 KSTLRQLQELRDVLQKAQ---LSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHlDMTI 1034
Cdd:TIGR00618 552 TSERKQRASLKEQMQEIQqsfSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD-LQDV 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1035 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNA-KEQLREKEFIMLQNE-QEISQLKKEIERTQQRMKEME 1112
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKeLLASRQLALQKMQSEkEQLTYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1113 SVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMkqlskekdahgnhlAEEL 1192
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA--------------ALQT 776
|
650 660 670
....*....|....*....|....*....|
gi 807045883 1193 GAskvREAHLEARMQAEIKKLSAEVESLKE 1222
Cdd:TIGR00618 777 GA---ELSHLAAEIQFFNRLREEDTHLLKT 803
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1040-1192 |
5.36e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 5.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1040 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRM------KEMES 1113
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1114 VMKEqeqyIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE--------DMKQLSKEKDAHG 1185
Cdd:COG1579 94 LQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDeelaeleaELEELEAEREELA 169
|
....*..
gi 807045883 1186 NHLAEEL 1192
Cdd:COG1579 170 AKIPPEL 176
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
946-1118 |
5.71e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 5.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 946 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE--RNWELKQR 1023
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1024 AAQVTHLdmtiREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREkefimlqneqEISQLKKEIER 1103
Cdd:COG1579 95 QKEIESL----KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE----------ELAELEAELEE 160
|
170
....*....|....*
gi 807045883 1104 TQQRMKEMESVMKEQ 1118
Cdd:COG1579 161 LEAEREELAAKIPPE 175
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
938-1142 |
6.17e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 938 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTtikDLTAELRECKMEIEDKKQELLEMDQALKERN 1017
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYD---ELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1018 WELKQRAAQVTHLDMTIREHRGEME------------QKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEqlREKEF 1085
Cdd:PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE--IMDEF 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 807045883 1086 IMLQNEQ-----EISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQ 1142
Cdd:PHA02562 333 NEQSKKLlelknKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
585-1044 |
6.26e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 6.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 585 KQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTehekicLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQ 664
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEE------LREELEKLEKLLQLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 665 FKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEElvlhLN 744
Cdd:COG4717 148 LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE----LE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 745 QLEGNKEKFEKQLkkkseEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQE---TIRNGELEDTQTKLEKQVS 821
Cdd:COG4717 224 ELEEELEQLENEL-----EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 822 KLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKiEMDQYKEELSKMEKEIMHLKRDGENKAMhl 901
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQLEELEQEIAAL-- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 902 sqLDMILDQTKTELEKKTNAVKELEKLQhsteteltealQKREVLETELQNAHGELKSTLRQLQ--ELRDVLQKAQLSLE 979
Cdd:COG4717 376 --LAEAGVEDEEELRAALEQAEEYQELK-----------EELEELEEQLEELLGELEELLEALDeeELEEELEELEEELE 442
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 980 EKYTTIKDLTAELRECKMEIE-----DKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1044
Cdd:COG4717 443 ELEEELEELREELAELEAELEqleedGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
825-1026 |
7.46e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 825 QELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQL 904
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 905 DMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQlslEEKYT 983
Cdd:COG3883 106 DVLLGSESfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ---AEQEA 182
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 807045883 984 TIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQ 1026
Cdd:COG3883 183 LLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1063-1224 |
8.78e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 8.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1063 NKQIESLNDKLQNAKEQL----REKEFIMLQNE-----QEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLG 1133
Cdd:COG3206 181 EEQLPELRKELEEAEAALeefrQKNGLVDLSEEaklllQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1134 Q--ELRLTREQVQNSHTELAEAR------HQQVQA-QREIERLSSELED-MKQLSKEKDAHGNHLAEELGASKVREAHLE 1203
Cdd:COG3206 261 QspVIQQLRAQLAELEAELAELSarytpnHPDVIAlRAQIAALRAQLQQeAQRILASLEAELEALQAREASLQAQLAQLE 340
|
170 180
....*....|....*....|....*..
gi 807045883 1204 ARM------QAEIKKLSAEVESLKEAY 1224
Cdd:COG3206 341 ARLaelpelEAELRRLEREVEVARELY 367
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
938-1179 |
8.82e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 8.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 938 EALQKREVLETELQNAHGELKSTLRQLqelrDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED-KKQELLEMDQAL-KE 1015
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLsTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1016 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQN---AKEQLREKEFIMLQNEQ 1092
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGgkvGGKALRPSQRVLLQAEQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1093 -----EISQLKKEIERTQQrmkeMESVMKEQEQYIAtqykEAID-LGQELRLTREQVQNSHTELAEARHQQVQAQREIER 1166
Cdd:PRK11281 202 allnaQNDLQRKSLEGNTQ----LQDLLQKQRDYLT----ARIQrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAAR 273
|
250
....*....|....*....
gi 807045883 1167 ------LSSELEDMKQLSK 1179
Cdd:PRK11281 274 iqanplVAQELEINLQLSQ 292
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
806-1151 |
1.18e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 806 NGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEK 885
Cdd:pfam12128 631 NGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 886 EimHLKRDGENKAMHLSQLDMILDQTKTELEK-KTNAVKELEKLQHSTETELtEALQKREVLETELQNAHGELKSTLRQL 964
Cdd:pfam12128 711 E--ARTEKQAYWQVVEGALDAQLALLKAAIAArRSGAKAELKALETWYKRDL-ASLGVDPDVIAKLKREIRTLERKIERI 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 965 QELRDVLQKAQLSLEEKYTTIKD-LTAELRECKMEIEDKKQELLEMDQALKERNWEL-KQRAA---QVTHLDMTIREHRG 1039
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQQQLARLIADTKLRRAKLeMERKAsekQQVRLSENLRGLRC 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1040 EMEQ-KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLreKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQ 1118
Cdd:pfam12128 868 EMSKlATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV--KKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDK 945
|
330 340 350
....*....|....*....|....*....|...
gi 807045883 1119 EQYIATQYKEAIDLGQELRLTREQVQNSHTELA 1151
Cdd:pfam12128 946 GIRLLDYRKLVPYLEQWFDVRVPQSIMVLREQV 978
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
966-1290 |
1.21e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 966 ELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKqELLEMDQALKERNWELKQRAAQVTHldmTIREHRGEMEQKI 1045
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLR---EINEISSELPELR 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1046 IKLEGtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtq 1125
Cdd:PRK03918 221 EELEK-LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-- 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1126 ykeaidLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDahgnHLAEELGASKVREAHLEar 1205
Cdd:PRK03918 298 ------LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK----ELEKRLEELEERHELYE-- 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1206 mqaEIKKLSAEVESLKeayhmemishqenhakwKISADSQKSSVQQLNEQLEKAKLELEEAQDTV----SNLHQQVQDRN 1281
Cdd:PRK03918 366 ---EAKAKKEELERLK-----------------KRLTGLTPEKLEKELEELEKAKEEIEEEISKItariGELKKEIKELK 425
|
....*....
gi 807045883 1282 EVIEAANEA 1290
Cdd:PRK03918 426 KAIEELKKA 434
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
828-1152 |
2.59e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 828 QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEmdqyKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 907
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMD----RQAAIYAEQERMAMERERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 908 LDQTKT-ELEKKTNAVKELEKLQhstetelTEALQKREVLETELQNAhgelkstlrqlqelrdvlQKAQLSLEEKYTTIK 986
Cdd:pfam17380 362 LERIRQeEIAMEISRMRELERLQ-------MERQQKNERVRQELEAA------------------RKVKILEEERQRKIQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 987 DLTAELRECKMEIEDKKQELLEMDQALKERNWE-LKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQ 1065
Cdd:pfam17380 417 QQKVEMEQIRAEQEEARQREVRRLEEERAREMErVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1066 IESLNDKLQNA------KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY-IATQYKEAIDLGQELRL 1138
Cdd:pfam17380 497 LEKELEERKQAmieeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMrKATEERSRLEAMERERE 576
|
330
....*....|....
gi 807045883 1139 TREQVQNSHTELAE 1152
Cdd:pfam17380 577 MMRQIVESEKARAE 590
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
808-1194 |
3.13e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 808 ELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLkrQKVIELTGTaRQVkiemdQYKEELSKMEKE 886
Cdd:COG3096 355 DLEELTERLEEQEEVVE-EAAEQLAEAEARLEAAEEEVDSLKSQlADY--QQALDVQQT-RAI-----QYQQAVQALEKA 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 887 imhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQHSTE--TELTEALQ--KREVLETELQNAHGELKSTL 961
Cdd:COG3096 426 ----RALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEqKLSVADAarRQFEKAYElvCKIAGEVERSQAWQTARELL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 962 RQLQELRDVLQKAQlSLEEKYttikdltAELREcKMEIEDKKQELLEmdqalkernwELKQRAAQVTHLDMTIREHRGEM 1041
Cdd:COG3096 502 RRYRSQQALAQRLQ-QLRAQL-------AELEQ-RLRQQQNAERLLE----------EFCQRIGQQLDAAEELEELLAEL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1042 EQkiiklegtlekselelkecnkQIESLNDKLQNAKEQLrekefimlqneqeiSQLKKEIERTQQRMKEMES------VM 1115
Cdd:COG3096 563 EA---------------------QLEELEEQAAEAVEQR--------------SELRQQLEQLRARIKELAArapawlAA 607
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 1116 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARhQQVQAQREieRLSSELEDMKQLSKEKDAHGNHLAEELGA 1194
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVER-DELAARKQ--ALESQIERLSQPGGAEDPRLLALAERLGG 683
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-420 |
3.97e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 180 AEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKV 259
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 260 AEKLEKVQAEEEILERNLTNCEKENK--------------RLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVK 325
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 326 NSEVMAQLTESRQSILKLESELENKDEILrdkfslmnenRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLK 405
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLL----------ARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250
....*....|....*
gi 807045883 406 RELFGFKSYLSKYQM 420
Cdd:COG4942 243 TPAAGFAALKGKLPW 257
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
535-1010 |
3.98e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 535 EAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQllTLEKQLEEKIVAYSsiAAKNAEleqELMEKNEK 614
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD--AAKKKAEEKKKADE--AKKKAE---EDKKKADE 1409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 615 IRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLEsldRLLT 694
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA---KKAD 1486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 695 ESKGEMKKENMKKDEALKALQ-NQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKI 773
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEaKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 774 KNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEad 853
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE-- 1644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 854 lKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLdmildQTKTELEKKTNAVKELEKLQHSTE 933
Cdd:PTZ00121 1645 -EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL-----KKEAEEAKKAEELKKKEAEEKKKA 1718
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 807045883 934 TELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD 1010
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
598-835 |
5.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 598 AAKNAELEQELMEKNEKIRSLETNINTEhekiclafEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQ 677
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 678 DIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICK---EELVLHLNQLEGNKEKFE 754
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 755 KQLKKKSEevycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETirnGELEDTQTKLEKQVSKLEQELQKQRESS 834
Cdd:COG4942 171 AERAELEA----LLAELEEERAALEALKAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEAAAAAERT 243
|
.
gi 807045883 835 A 835
Cdd:COG4942 244 P 244
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1100-1304 |
6.47e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1100 EIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSK 1179
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1180 EKDAHGNHLAEELGASKVREA--------HLEARMQAEIKKLSAEVESLKEAyhmemishqenhakwKISADSQKSSVQQ 1251
Cdd:COG3883 97 RSGGSVSYLDVLLGSESFSDFldrlsalsKIADADADLLEELKADKAELEAK---------------KAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 807045883 1252 LNEQLEKAKLELE----EAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAK 1304
Cdd:COG3883 162 LKAELEAAKAELEaqqaEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
807-1107 |
7.20e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 7.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 807 GELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLKR------------QKVIELTGTARQVKIEM 873
Cdd:PRK04863 355 ADLEELEERLEEQNEVVE-EADEQQEENEARAEAAEEEVDELKSQlADYQQaldvqqtraiqyQQAVQALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 874 D-------QYKEELSKMEKEIMHLKRDGENKamhLSQLDMILDQTKTELEKKTNAVKELEKLQ-HSTETELTEALQKREV 945
Cdd:PRK04863 434 DltadnaeDWLEEFQAKEQEATEELLSLEQK---LSVAQAAHSQFEQAYQLVRKIAGEVSRSEaWDVARELLRRLREQRH 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 946 LETELQ---NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQ 1022
Cdd:PRK04863 511 LAEQLQqlrMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1023 RAAQVTHLDMTirehrgemEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIE 1102
Cdd:PRK04863 591 LQARIQRLAAR--------APAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIE 662
|
....*
gi 807045883 1103 RTQQR 1107
Cdd:PRK04863 663 RLSQP 667
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
987-1303 |
7.58e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 987 DLTAELRECKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQvthldmtIREHRGEMeQKIIKLEGTLEKSELELKECN 1063
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARelaELNEAESDLEQDYQA-------ASDHLNLV-QTALRQQEKIERYQADLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1064 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMkemesvmkEQEQYIATQYKEAIdlgQELRLTREQV 1143
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL--------DVQQTRAIQYQQAV---QALERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1144 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVR-EAHLEA----RMQAEIKK 1212
Cdd:PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQkLSVAQAAHSQFeqayqLVRKIAGEVSRsEAWDVArellRRLREQRH 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1213 LSAEVESLKEAYH-MEMISHQENHAKWKISADSQKSSVQ------------QLNEQLEKAKLELEEAQDTVSNLHQQVQD 1279
Cdd:PRK04863 511 LAEQLQQLRMRLSeLEQRLRQQQRAERLLAEFCKRLGKNlddedeleqlqeELEARLESLSESVSEARERRMALRQQLEQ 590
|
330 340
....*....|....*....|....*..
gi 807045883 1280 RNEVI---EAANEALLTKESELTRLQA 1303
Cdd:PRK04863 591 LQARIqrlAARAPAWLAAQDALARLRE 617
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1040-1165 |
7.58e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1040 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqnEQEISQLKKEIERTQQRMKEMesvmkEQE 1119
Cdd:PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA------QQAIKEAKKEADEIIKELRQL-----QKG 599
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 807045883 1120 QYIATQYKEAIDlgqelrlTREQVQNSHTELAEARHQQVQAQREIE 1165
Cdd:PRK00409 600 GYASVKAHELIE-------ARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
389-690 |
8.37e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 8.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 389 RVELRSLEKIISQLPLKRELFGFKSYLSKYQMSSF----SNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLhaNLTA 464
Cdd:PLN02939 99 RASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLvgmiQNAEKNILLLNQARLQALEDLEKILTEKEALQGKI--NILE 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 465 NQLSQSlitcndsQESSKLSSLETEPVKLGGHQVESVKdqnqHTMNKQYEKERQRLVTGIEELRTkliqIEAENSDLKVN 544
Cdd:PLN02939 177 MRLSET-------DARIKLAAQEKIHVEILEEQLEKLR----NELLIRGATEGLCVHSLSKELDV----LKEENMLLKDD 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 545 MahrtsqfQLIQEELLEKASNSSKLeSEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQE-LMEKNEKIRSLETNIN 623
Cdd:PLN02939 242 I-------QFLKAELIEVAETEERV-FKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDcWWEKVENLQDLLDRAT 313
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 807045883 624 TEHEKICLAfekakkihLEQHKEMEKQIERLEAQLEKKDqQFKEQEKTMSMLQQDIICKQHHLESLD 690
Cdd:PLN02939 314 NQVEKAALV--------LDQNQDLRDKVDKLEASLKEAN-VSKFSSYKVELLQQKLKLLEERLQASD 371
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
831-1185 |
9.68e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 9.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 831 RESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQ-------VKIEMDQyKEELSKMEKEIMHLKRdgenkamHLSQ 903
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRfigshlaVAFEADP-EAELRQLNRRRVELER-------ALAD 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 904 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKR-EVLETELQNAHgELKSTLRQlqelrdvlQKAQLSLEEKy 982
Cdd:PRK04863 856 HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRvEEIREQLDEAE-EAKRFVQQ--------HGNALAQLEP- 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 983 ttikdLTAELRECKMEIEDKKQELLEMDQALKErnweLKQRAAQVTHLdMTIREHRG-EMEQKIikLEGTLEKSELeLKE 1061
Cdd:PRK04863 926 -----IVSVLQSDPEQFEQLKQDYQQAQQTQRD----AKQQAFALTEV-VQRRAHFSyEDAAEM--LAKNSDLNEK-LRQ 992
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1062 CNKQIESLNDKlqnAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEqeqyIATQYKEaiDLGQELRLTRE 1141
Cdd:PRK04863 993 RLEQAEQERTR---AREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD----LGVPADS--GAEERARARRD 1063
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 807045883 1142 QVqnsHTELAEARHQQVQAQREIERLSSELEDM-KQLSK-EKDAHG 1185
Cdd:PRK04863 1064 EL---HARLSANRSRRNQLEKQLTFCEAEMDNLtKKLRKlERDYHE 1106
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
972-1143 |
1.02e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 972 QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGT 1051
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED-----------LEKEIKRLELEIEEVEAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1052 LEKSELELKEC--NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEA 1129
Cdd:COG1579 75 IKKYEEQLGNVrnNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170
....*....|....
gi 807045883 1130 IDLGQELRLTREQV 1143
Cdd:COG1579 155 EAELEELEAEREEL 168
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
497-1007 |
1.05e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 497 QVESVKDQNQHTMNK--QYEKERQRLVTGIEELRTKLIQIEAENSDLKvnmahrtSQFQLIQEELLEKASNSSKLESEMT 574
Cdd:pfam10174 276 QMEVYKSHSKFMKNKidQLKQELSKKESELLALQTKLETLTNQNSDCK-------QHIEVLKESLTAKEQRAAILQTEVD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 575 kkcsqllTLEKQLEEKivayssiaaknaelEQELMEKNEKIRSLEtninteHEKICLAFE----------KAKKIHLEQh 644
Cdd:pfam10174 349 -------ALRLRLEEK--------------ESFLNKKTKQLQDLT------EEKSTLAGEirdlkdmldvKERKINVLQ- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 645 kemeKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTEskgemkkenmkKDEALKALQNQVSEETIK 724
Cdd:pfam10174 401 ----KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSE-----------KERIIERLKEQREREDRE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 725 VRqldsaleickEELvlhlnqlegnkEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETI 804
Cdd:pfam10174 466 RL----------EEL-----------ESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEI 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 805 RNGELEDTQTKLEKQVSKLEQ--ELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSK 882
Cdd:pfam10174 525 AVEQKKEECSKLENQLKKAHNaeEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAE 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 883 MEKEIMHLKRDGENKAMHLsqldmildQTKTELEKKTNAvkELEKLQHSTETELTEALQKREVLETelqnaHGELKSTLR 962
Cdd:pfam10174 605 LESLTLRQMKEQNKKVANI--------KHGQQEMKKKGA--QLLEEARRREDNLADNSQQLQLEEL-----MGALEKTRQ 669
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 807045883 963 QLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELL 1007
Cdd:pfam10174 670 ELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
438-1298 |
1.11e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 438 KLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPvklgghqvesvkdQNQHTMNKQYEKER 517
Cdd:pfam01576 228 QAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDL-------------ESERAARNKAEKQR 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 518 QRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLL-TLEKQLEEKIVAYSS 596
Cdd:pfam01576 295 RDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALeELTEQLEQAKRNKAN 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 597 IAAKNAELEQELMEKNEKIRSLETnintehekiclafekakkihleQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQ 676
Cdd:pfam01576 375 LEKAKQALESENAELQAELRTLQQ----------------------AKQDSEHKRKKLEGQLQELQARLSESERQRAELA 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 677 QDIICKQHHLESLDRLLTESKGE---MKKENMKKDEALKALQNQVSEETIKVRQLDS---ALEICKEELVLHLNQLEGNK 750
Cdd:pfam01576 433 EKLSKLQSELESVSSLLNEAEGKnikLSKDVSSLESQLQDTQELLQEETRQKLNLSTrlrQLEDERNSLQEQLEEEEEAK 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 751 EKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQ 830
Cdd:pfam01576 513 RNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 831 RE--SSAEKLRKMEEKCESAAHEADLKRQKvieltgtarqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMIL 908
Cdd:pfam01576 593 RQlvSNLEKKQKKFDQMLAEEKAISARYAE-------------ERDRAEAEAREKETRALSLARALEEALEAKEELERTN 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 909 DQTKTELEKKTNA-------VKELEKLQHSTETELTEALQKREVLETELQ---NAHGELKSTLRQL--QELRDVLQKAQL 976
Cdd:pfam01576 660 KQLRAEMEDLVSSkddvgknVHELERSKRALEQQVEEMKTQLEELEDELQateDAKLRLEVNMQALkaQFERDLQARDEQ 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 977 SLEEKyttiKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVThldmTIREHRGEMEQKIIKLEGTLEKSE 1056
Cdd:pfam01576 740 GEEKR----RQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQID----AANKGREEAVKQLKKLQAQMKDLQ 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1057 LEL--------------KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIER-------TQQRMKEMESVM 1115
Cdd:pfam01576 812 RELeearasrdeilaqsKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASgasgksaLQDEKRRLEARI 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1116 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR-------HQQVQAQREIERLSSELEDMKQLSKEKDAHGNHL 1188
Cdd:pfam01576 892 AQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERstsqkseSARQQLERQNKELKAKLQEMEGTVKSKFKSSIAA 971
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1189 AEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQD 1268
Cdd:pfam01576 972 LEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASRANA 1051
|
890 900 910
....*....|....*....|....*....|
gi 807045883 1269 TVSNLHQQVQDRNEVIEAANEALLTKESEL 1298
Cdd:pfam01576 1052 ARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
987-1303 |
1.17e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 987 DLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTI---REHRGEMeQKIIKLEGTLEKSELELKECN 1063
Cdd:COG3096 285 ERALELRR---ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYqaaSDHLNLV-QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1064 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEmesvmkeqEQYIATQYKEAIdlgQELRLTREQV 1143
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDV--------QQTRAIQYQQAV---QALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1144 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVRE-AHLEARMQ----AEIKK 1212
Cdd:COG3096 430 GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQkLSVADAARRQFekayeLVCKIAGEVERSqAWQTARELlrryRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1213 LSAEVESLKEAYH-MEMISHQENHAKWKISADSQKSSVQ------------QLNEQLEKAKLELEEAQDTVSNLHQ---Q 1276
Cdd:COG3096 510 LAQRLQQLRAQLAeLEQRLRQQQNAERLLEEFCQRIGQQldaaeeleellaELEAQLEELEEQAAEAVEQRSELRQqleQ 589
|
330 340
....*....|....*....|....*..
gi 807045883 1277 VQDRNEVIEAANEALLTKESELTRLQA 1303
Cdd:COG3096 590 LRARIKELAARAPAWLAAQDALERLRE 616
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
808-1080 |
1.28e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 808 ELEDTQTK---LEKQVSKLEQELQKQREssaeKLRKMEEKC---------------ESAAHEADLKRQKVIEltgtARQV 869
Cdd:PRK04863 838 ELRQLNRRrveLERALADHESQEQQQRS----QLEQAKEGLsalnrllprlnlladETLADRVEEIREQLDE----AEEA 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 870 KIEMDQYKEELSKMEKEIMHLKRDGENKAmHLSQLDMILDQTKTELEKKTNAVKELEKLQH-----------STETELTE 938
Cdd:PRK04863 910 KRFVQQHGNALAQLEPIVSVLQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyedaaemlAKNSDLNE 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 939 ALQKR-EVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDkkqellEMDQALKERN 1017
Cdd:PRK04863 989 KLRQRlEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADS------GAEERARARR 1062
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 807045883 1018 WELKQRaaqvthldmtIREHRGEMEQkiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQL 1080
Cdd:PRK04863 1063 DELHAR----------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
187-783 |
1.31e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 187 KVLREAENKLEQsqkmvIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALynAEELSKAFQQYK--KKVAEKLE 264
Cdd:PRK03918 169 EVIKEIKRRIER-----LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL--REELEKLEKEVKelEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 265 KVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRImavknSEVMAQLTESRQSILKLE 344
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKL-----SEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 345 SELENKDEILRDKfslMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIisqLPLKRELFGFKSYLSKYQMSSFS 424
Cdd:PRK03918 317 SRLEEEINGIEER---IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA---KAKKEELERLKKRLTGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 425 NKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLtaNQLSQSLITC----NDSQESSKLSSLETEPVKLgghqves 500
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI--EELKKAKGKCpvcgRELTEEHRKELLEEYTAEL------- 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 501 vkdqnqhtmnKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQ----------EELLEKASNSSKLE 570
Cdd:PRK03918 462 ----------KRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEleeklkkynlEELEKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 571 SEMTKKCSQLLTLEKQLEEKIVAYSSIAA---KNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQhKEM 647
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEELKKKLAElekKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL-KDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 648 EKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGE-MKKENMKKDEALKALQNQVSEETIKVR 726
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEeLREEYLELSRELAGLRAELEELEKRRE 690
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 807045883 727 QLDSALEICKEElvlhLNQLEGNKEKFEKqLKKKSEEVYCLQKELK-----IKNHSLQETSE 783
Cdd:PRK03918 691 EIKKTLEKLKEE----LEEREKAKKELEK-LEKALERVEELREKVKkykalLKERALSKVGE 747
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
514-679 |
1.45e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 514 EKERQRLVTGIEELRTKLIQIEAENSDLKvnmahrtSQFQLIQEELLEKASNSSKLESEmtkkcSQLLTLEKQLEEKIVA 593
Cdd:COG3206 211 SEEAKLLLQQLSELESQLAEARAELAEAE-------ARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 594 YSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLekkdQQFKEQEKTMS 673
Cdd:COG3206 279 LAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL----AELPELEAELR 354
|
....*.
gi 807045883 674 MLQQDI 679
Cdd:COG3206 355 RLEREV 360
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
968-1191 |
1.50e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 968 RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQaLKERNWELKQRAAQVT-HLDMTIREHRGEMEQKII 1046
Cdd:COG5022 853 RSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISS-LKLVNLELESEIIELKkSLSSDLIENLEFKTELIA 931
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1047 KLEGTLEKSELEL-----KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMesvmkeqeqy 1121
Cdd:COG5022 932 RLKKLLNNIDLEEgpsieYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL---------- 1001
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1122 iatqykeaidlgQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEE 1191
Cdd:COG5022 1002 ------------AELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLEN 1059
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
172-396 |
1.52e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 172 EEQIINLEAEVSAQDKVLREAENKLEQSQKMVieKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALY-NAEELSK 250
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAEDLV--EAEDRIERLEERREDLEELIAERRETIEEKRERAEELReRAAELEA 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 251 AFQQYKKKVAEKLEKVQAEEEI---LERNLTNCEKENKRL------QERCGLYKSELEILKEKLRQLKEENNNGKEKLRI 321
Cdd:PRK02224 552 EAEEKREAAAEAEEEAEEAREEvaeLNSKLAELKERIESLerirtlLAAIADAEDEIERLREKREALAELNDERRERLAE 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 322 MAVKNSEVMAQLTESRQSILK-----LESELENKDEILRDkfsLMNENRELKVRVAAQNERLDlcqqEIESSRVELRSLE 396
Cdd:PRK02224 632 KRERKRELEAEFDEARIEEARedkerAEEYLEQVEEKLDE---LREERDDLQAEIGAVENELE----ELEELRERREALE 704
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
510-978 |
1.74e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.82 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 510 NKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLtleKQLEE 589
Cdd:pfam07111 237 SQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLL---NRWRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 590 KIVAYSsiaaknAELEQELMEKNEKIRSLETNINTEHEKI-CLAFEKAKKIHLEQHKEMEKQIERLEAQleKKDQQFKEQ 668
Cdd:pfam07111 314 KVFALM------VQLKAQDLEHRDSVKQLRGQVAELQEQVtSQSQEQAILQRALQDKAAEVEVERMSAK--GLQMELSRA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 669 EKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLhlnqleg 748
Cdd:pfam07111 386 QEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAL------- 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 749 nkEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQtkLEKQVSKLEQELQ 828
Cdd:pfam07111 459 --AQLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQ--LSEVAQQLEQELQ 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 829 KQRESSA---EKLRKMEEKCESAAHEADLKRQKVI---ELTGTARQVKIE--MDQYKEELSKMEKEIMHLKRDGENKAMH 900
Cdd:pfam07111 535 RAQESLAsvgQQLEVARQGQQESTEEAASLRQELTqqqEIYGQALQEKVAevETRLREQLSDTKRRLNEARREQAKAVVS 614
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 807045883 901 LSQLdmildQTKTELEKKTNavKELEKLQHSTETELTEALQKRevlETELQNAHGELKSTLRQLQELRDVLQKAQLSL 978
Cdd:pfam07111 615 LRQI-----QHRATQEKERN--QELRRLQDEARKEEGQRLARR---VQELERDKNLMLATLQQEGLLSRYKQQRLLAV 682
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
777-1176 |
1.74e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 777 SLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQREssaeKLRKMEEKCESAAHEADlkr 856
Cdd:pfam07888 39 CLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSRE----KHEELEEKYKELSASSE--- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 857 qkvieltgtarqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMildQTKTELEKKTNAVKELEKLQHSTETEl 936
Cdd:pfam07888 112 ---------------ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVL---ERETELERMKERAKKAGAQRKEEEAE- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 937 tealqkREVLETELQNAHGELKSTLRQLQELRDvlqkaqlSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKER 1016
Cdd:pfam07888 173 ------RKQLQAKLQQTEEELRSLSKEFQELRN-------SLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1017 NwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQeisQ 1096
Cdd:pfam07888 240 R-SLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAE---A 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1097 LKKEIERTQQRMKEMESVMKEQEqyiATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1176
Cdd:pfam07888 316 DKDRIEKLSAELQRLEERLQEER---MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLE 392
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
809-1199 |
1.88e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 809 LEDTQTKLEKQV---SKLEQEL----------------QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 869
Cdd:PRK04863 309 LVEMARELAELNeaeSDLEQDYqaasdhlnlvqtalrqQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 870 KIEMDQYKEELSKMEKEIMHLKRdgenKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 949
Cdd:PRK04863 389 EEEVDELKSQLADYQQALDVQQT----RAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQK 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 950 LQNAhgelKSTLRQLQELRDVLQKA--QLSLEEKYTTIKDLTAELRECKMEIEDKKQelLEMDQALKERNWELKQRAAQV 1027
Cdd:PRK04863 465 LSVA----QAAHSQFEQAYQLVRKIagEVSRSEAWDVARELLRRLREQRHLAEQLQQ--LRMRLSELEQRLRQQQRAERL 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1028 thldmtirehRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKeieRTQQR 1107
Cdd:PRK04863 539 ----------LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA---RAPAW 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1108 MKEMESVMKEQEQYIATQyKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSseledmkQLSKEKDAHGNH 1187
Cdd:PRK04863 606 LAAQDALARLREQSGEEF-EDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS-------QPGGSEDPRLNA 677
|
410
....*....|..
gi 807045883 1188 LAEELGASKVRE 1199
Cdd:PRK04863 678 LAERFGGVLLSE 689
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
987-1310 |
2.00e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 987 DLTAELRECKMEIEDKK---------QELLE--------------------MDQALKERNwEL-----KQRAAQVTHLDM 1032
Cdd:PRK04863 234 DMEAALRENRMTLEAIRvtqsdrdlfKHLITestnyvaadymrhanerrvhLEEALELRR-ELytsrrQLAAEQYRLVEM 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1033 -----TIREHRGEMEQKI-------------IKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEI 1094
Cdd:PRK04863 313 arelaELNEAESDLEQDYqaasdhlnlvqtaLRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1095 SQLKKEIERTQQRMkemesvmkEQEQYIATQYKEAIdlgQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDM 1174
Cdd:PRK04863 393 DELKSQLADYQQAL--------DVQQTRAIQYQQAV---QALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1175 KQ-LSKEKDAHGNH-----LAEELGASKVR-EAHLEA----RMQAEIKKLSAEVESLKEAYH-MEMISHQENHAKwKISA 1242
Cdd:PRK04863 462 EQkLSVAQAAHSQFeqayqLVRKIAGEVSRsEAWDVArellRRLREQRHLAEQLQQLRMRLSeLEQRLRQQQRAE-RLLA 540
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 807045883 1243 DSQKSSVQQLNEQlekaklelEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1310
Cdd:PRK04863 541 EFCKRLGKNLDDE--------DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1063-1181 |
2.10e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1063 NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDlgQELRLTREQ 1142
Cdd:PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD--EIIKELRQL 596
|
90 100 110
....*....|....*....|....*....|....*....
gi 807045883 1143 VQNSHTELAEarHQQVQAQREIERLSSELEDMKQLSKEK 1181
Cdd:PRK00409 597 QKGGYASVKA--HELIEARKRLNKANEKKEKKKKKQKEK 633
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-355 |
2.11e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 161 AQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNE 240
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 241 ALYNAEELSKAFQQYKKKvAEKLEKVQAEEEILERNLTNCEKENKRLQErcgLYKSELEILK--EKLRQLKEENNNGKEK 318
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKK-AEEAKKAEEDEKKAAEALKKEAEEAKKAEE---LKKKEAEEKKkaEELKKAEEENKIKAEE 1734
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 807045883 319 LRIMA---VKNSEVMAQLTESRQSILKLESELENKDEILR 355
Cdd:PTZ00121 1735 AKKEAeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
805-1015 |
2.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 805 RNGELEDTQTKLEKQVSKLEQELQkQRESSAEKLRKmEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKME 884
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELE-EAEAALEEFRQ-KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 885 KEImhlkRDGENKAMHLSQlDMILDQTKTELEKKTNAVKELEKL---QHSTETELTEALQK-REVLETELQNAHGELKST 960
Cdd:COG3206 247 AQL----GSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAAlRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 807045883 961 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE 1015
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
222-1229 |
2.39e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 222 VDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERcglyKSELEIL 301
Cdd:TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR----LKEIEHN 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 302 KEKLRQLKEENNNGKEKLRIMAVKNSEVMaqltesrqsiLKLESELENKDEILRDkfslMNENRELKVRvaAQNERLDLC 381
Cdd:TIGR00606 261 LSKIMKLDNEIKALKSRKKQMEKDNSELE----------LKMEKVFQGTDEQLND----LYHNHQRTVR--EKERELVDC 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 382 QQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFsnkedrcigcceanklviselriklaikEAEIQKLHAN 461
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRAR----------------------------DSLIQSLATR 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 462 LTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDL 541
Cdd:TIGR00606 377 LELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEEL 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 542 KvNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKivaysSIAAKNAELEQELMEKNEKIRSLETN 621
Cdd:TIGR00606 457 K-FVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK-----SLQNEKADLDRKLRKLDQEMEQLNHH 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 622 INTEHEKICLAFEKAKKihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLteSKGEMK 701
Cdd:TIGR00606 531 TTTRTQMEMLTKDKMDK--DEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL--ASLEQN 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 702 KENMKKDEALKALQNQVSEETIkvrqldsaLEICKEElvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQET 781
Cdd:TIGR00606 607 KNHINNELESKEEQLSSYEDKL--------FDVCGSQ------DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQL 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 782 SEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKcesaAHEADLKRQKVIE 861
Cdd:TIGR00606 673 TDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR----QSIIDLKEKEIPE 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 862 LTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDmILDQTKTELEKKTNAVKELEKLQHSTETELTEALQ 941
Cdd:TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT-IMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 942 KREVLETelQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELK 1021
Cdd:TIGR00606 828 NQEKQEK--QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIK 905
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1022 QRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE-KEFIMLQNEQEISQLKKE 1100
Cdd:TIGR00606 906 DAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTVNAQ 985
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1101 IERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQElrLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKqLSKE 1180
Cdd:TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDN--LTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQK-LEEN 1062
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*....
gi 807045883 1181 KDAHGNHLAEELGASKVREahlEARMQAEIKKLSAEVESLKEAYHMEMI 1229
Cdd:TIGR00606 1063 IDLIKRNHVLALGRQKGYE---KEIKHFKKELREPQFRDAEEKYREMMI 1108
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
232-380 |
2.54e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNltncekENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE------ELQREEERLVQKEEQLDARAEKLDNLENQ 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 807045883 312 NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESElENKDEILRDKFSLMNEnrELKVRVAAQNERLDL 380
Cdd:PRK12705 107 LEEREKALSARELELEELEKQLDNELYRVAGLTPE-QARKLLLKLLDAELEE--EKAQRVKKIEEEADL 172
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
957-1190 |
2.58e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 957 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ----ELLEMDQALKErnwELKQRAAQVTHLDM 1032
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQnkydELVEEAKTIKA---EIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1033 TIR---EHRGEMEQKIIKLEGTLEKSELELK---------ECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKE 1100
Cdd:PHA02562 249 DIEdpsAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcpTCTQQISEGPDRITKIKDKLKELQ-------HSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1101 IERTQQRMKEmesvmkeqeqyIATQYKEAIDLGQELRLTREQVQNShtelaeaRHQQVQAQREIERLSSEL----EDMKQ 1176
Cdd:PHA02562 322 IDELEEIMDE-----------FNEQSKKLLELKNKISTNKQSLITL-------VDKAKKVKAAIEELQAEFvdnaEELAK 383
|
250
....*....|....
gi 807045883 1177 LSKEKDAHGNHLAE 1190
Cdd:PHA02562 384 LQDELDKIVKTKSE 397
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
866-1016 |
2.91e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 866 ARqVKIEMDQYKEELSKMEKEIMHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTEtELTEALQKREV 945
Cdd:COG0542 400 AR-VRMEIDSKPEELDELERRLEQLEIE---------KEALKKEQDEASFERLAELRDELAELEEELE-ALKARWEAEKE 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 946 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIK-DLTAElreckmEI----------------EDKKQELLE 1008
Cdd:COG0542 469 LIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLReEVTEE------DIaevvsrwtgipvgkllEGEREKLLN 542
|
....*...
gi 807045883 1009 MDQALKER 1016
Cdd:COG0542 543 LEEELHER 550
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
767-981 |
2.93e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 767 LQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCE 846
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 847 SAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENkamhlsqldmiLDQTKTELEKKTNAVKELE 926
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 807045883 927 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 981
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
573-722 |
3.48e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 573 MTKKCSQLLTLEKQLEEKIVAYSSIAAKNA--ELEQELMEKNEKIRSletnintehekiclAFEKAKKIHLEQHKEMEKQ 650
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIkkEALLEAKEEIHKLRN--------------EFEKELRERRNELQKLEKR 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 807045883 651 IERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKE-----NMKKDEALKALQNQVSEET 722
Cdd:PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQElerisGLTAEEAKEILLEKVEEEA 167
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
475-1087 |
4.45e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 475 NDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMN-KQYEKERQRLVTGIEE----------LRTKLIQIEAENSDLK- 542
Cdd:TIGR01612 1132 KALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDpEEIEKKIENIVTKIDKkkniydeikkLLNEIAEIEKDKTSLEe 1211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 543 ---VNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQeLMEKNEKIRSLE 619
Cdd:TIGR01612 1212 vkgINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMET-FNISHDDDKDHH 1290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 620 TNINTEHEKICLAFEKAKKIhlEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDI-----ICKQHHLESLDRLLT 694
Cdd:TIGR01612 1291 IISKKHDENISDIREKSLKI--IEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIaniynILKLNKIKKIIDEVK 1368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 695 ESKGEMKKENMKKDEALKAlqnqvSEETIKVRQLDSALEICKEelvlhlnqlegnkeKFEKQLKKKSEEvYCLQKELKIK 774
Cdd:TIGR01612 1369 EYTKEIEENNKNIKDELDK-----SEKLIKKIKDDINLEECKS--------------KIESTLDDKDID-ECIKKIKELK 1428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 775 NHSLQEtsEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKleQELQKQRESSAEKLRKMEEKCESAAHEADl 854
Cdd:TIGR01612 1429 NHILSE--ESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKK--DNATNDHDFNINELKEHIDKSKGCKDEAD- 1503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 855 KRQKVIEltgtarQVKIEMDQYKEELS---------KMEKEIMHLKRDGENKAMHLSQLDmilDQTKTELEKKTNAVKEL 925
Cdd:TIGR01612 1504 KNAKAIE------KNKELFEQYKKDVTellnkysalAIKNKFAKTKKDSEIIIKEIKDAH---KKFILEAEKSEQKIKEI 1574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 926 EKLQHSTETE--------------------LTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE-EKYTT 984
Cdd:TIGR01612 1575 KKEKFRIEDDaakndksnkaaidiqlslenFENKFLKISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENgDNLNS 1654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 985 IKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQ-----VTHLDMTIREHRGEMEQKIIKLEGTLEK----- 1054
Cdd:TIGR01612 1655 LQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNyeigiIEKIKEIAIANKEEIESIKELIEPTIENlissf 1734
|
650 660 670
....*....|....*....|....*....|....*
gi 807045883 1055 --SELELKECNKQIESLNDKLQNAKEQLREKEFIM 1087
Cdd:TIGR01612 1735 ntNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNII 1769
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
85-280 |
4.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 85 CKISGSSTDFQKKPRDKMFSSS----------APVDQEIKSLREKLNKLRQQNACL------VTQNHSLMTKFESIHFEL 148
Cdd:COG4913 581 GQVKGNGTRHEKDDRRRIRSRYvlgfdnraklAALEAELAELEEELAEAEERLEALeaeldaLQERREALQRLAEYSWDE 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 149 TQSRAKVSMLESAQQQ----AASVPILEEqiinLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDL 224
Cdd:COG4913 661 IDVASAEREIAELEAElerlDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 807045883 225 LEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNC 280
Cdd:COG4913 737 EAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
111-619 |
5.20e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 111 QEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLR 190
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 191 EAENKLE--QSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEK-LEKVQ 267
Cdd:PRK03918 311 EIEKRLSrlEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtPEKLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 268 AEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEennngkeklrimavknsevmaqlTESRQSILKLESEL 347
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK-----------------------AKGKCPVCGRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 348 ENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESsrvELRSLEKIISQLPLKRELFGFKSYLSKYqmssfsNKE 427
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEK---VLKKESELIKLKELAEQLKELEEKLKKY------NLE 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 428 DrcigcCEANKLVISELRIKLAIKEAEIQKLHANLT-ANQLSQSLITCNDSQES--SKLSSLETEPVKLGGHQVESVKDQ 504
Cdd:PRK03918 519 E-----LEKKAEEYEKLKEKLIKLKGEIKSLKKELEkLEELKKKLAELEKKLDEleEELAELLKELEELGFESVEELEER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 505 --------NQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKasNSSKLESEMTKK 576
Cdd:PRK03918 594 lkelepfyNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLEL 671
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 807045883 577 CSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLE 619
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
879-1028 |
5.79e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 879 ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHG--E 956
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 807045883 957 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVT 1028
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
901-1288 |
6.42e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.97 E-value: 6.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 901 LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQK-REVLETELQNAH-------------GELKSTLRQLQE 966
Cdd:PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLyRELRKSLLANRFsfgpaldelekqlENLEEEFSQFVE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 967 L---------RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvTHLDMTIREH 1037
Cdd:PRK04778 187 LtesgdyveaREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDH-----LDIEKEIQDL 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1038 RGEMEQKIIKLEgtleksELELKECNKQIESLNDKLQNAKEQLrEKEFIMlqneqeisqlKKEIERTQQRMKEMESVMKE 1117
Cdd:PRK04778 262 KEQIDENLALLE------ELDLDEAEEKNEEIQERIDQLYDIL-EREVKA----------RKYVEKNSDTLPDFLEHAKE 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1118 QEQyiatqykeaiDLGQELRLTREQVQNSHTELAEARhqqvQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASkv 1197
Cdd:PRK04778 325 QNK----------ELKEEIDRVKQSYTLNESELESVR----QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI-- 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1198 rEAHLEArMQAEIKKLSAEVESLKEAyhmEMISHQE-NHAKWKISADSQK---------------------SSVQQLNEQ 1255
Cdd:PRK04778 389 -LKQLEE-IEKEQEKLSEMLQGLRKD---ELEAREKlERYRNKLHEIKRYleksnlpglpedylemffevsDEIEALAEE 463
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 807045883 1256 LEKAKL-------ELEEAQDTVSNLHQQVqdrNEVIEAAN 1288
Cdd:PRK04778 464 LEEKPInmeavnrLLEEATEDVETLEEET---EELVENAT 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
833-1044 |
7.09e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 833 SSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 912
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 913 TELEKKTNAVKELEKL--QHSTETELTEALQKREVLET------------ELQNAHGELKSTLRQLQELRDVLQKAQLSL 978
Cdd:COG4942 97 AELEAQKEELAELLRAlyRLGRQPPLALLLSPEDFLDAvrrlqylkylapARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 807045883 979 EEKYTTIKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1044
Cdd:COG4942 177 EALLAELEEERAALEA---LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
900-1223 |
7.14e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 40.45 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 900 HLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE 979
Cdd:pfam04108 22 LLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQLLKDLDAALERLEETLDKLRNTPVEPALPPGEEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 980 EKY-------TTIKDLTAELRECKMEIEDKKQElleMDQALKERNWELKQraaqvTHLDMTIREHRGEMEQKIIKLEGTL 1052
Cdd:pfam04108 102 QKTlldfideDSVEILRDALKELIDELQAAQES---LDSDLKRFDDDLRD-----LQKELESLSSPSESISLIPTLLKEL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1053 EKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ----NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKE 1128
Cdd:pfam04108 174 ESLEEEMASLLESLTNHYDQCVTAVKLTEGGRAEMLEvlenDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDE 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 1129 AIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKE-KDAHGNHLAEelgasKVREAHLEARMQ 1207
Cdd:pfam04108 254 LLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELEDLREFYEGfPSAYGSLLLE-----VERRREWAEKMK 328
|
330
....*....|....*.
gi 807045883 1208 AEIKKLSAEVESLKEA 1223
Cdd:pfam04108 329 KILRKLAEELDRLQEE 344
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
291-392 |
7.85e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.81 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 807045883 291 CGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDE---ILRDKFSLMNE-NRE 366
Cdd:pfam05911 676 NDLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKEsnsLAETQLKCMAEsYED 755
|
90 100
....*....|....*....|....*.
gi 807045883 367 LKVRVAAQNERLDLCQQEIESSRVEL 392
Cdd:pfam05911 756 LETRLTELEAELNELRQKFEALEVEL 781
|
|
| |
