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Golgi integral membrane protein 4 isoform 2 [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
2A1904 super family
cl36772 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
316-568
1.79e-07
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
TIGR00927 :Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 54.62
E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 316 EE E E MEQVGQA E HL EE EHDPSPE E QDR E W K EQH E Q ------- R EAANLL EG HAR A EVYPSAKPMIKFQSPY E EQL E QQRL 388
Cdd:TIGR00927 647 EE G E RPTEAEG E NG EE SGGEAEQ E GET E T K GEN E S egeipae R KGEQEG EG EIE A KEADHKGETEAEEVEH E GET E AEGT 726
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 389 AVQQVE E AQQLR E HQ E ALHQQRLQ G hllrqqeqqqqqvar EMALQRQAELE E GRPQHQEQLRQQAHY D AMDNDIVQGA E D 468
Cdd:TIGR00927 727 EDEGEI E TGEEG E EV E DEGEGEAE G --------------- KHEVETEGDRK E TEHEGETEAEGKEDE D EGEIQAGEDG E M 791
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 469 Q G IQ G E EG AY E RDNQHQDEAEGDPGNRH E PREQGPREA D PES E ADRA A VEDINPAD D P --- NNQ G EDEFEEA E QVR EE NL 545
Cdd:TIGR00927 792 K G DE G A EG KV E HEGETEAGEKDEHEGQS E TQADDTEVK D ETG E QELN A ENQGEAKQ D E kgv DGG G GSDGGDS E EEE EE EE 871
250 260
....*....|....*....|...
gi 815890944 546 PD E N EE QKQSNQKQ E NT E V EE H L 568
Cdd:TIGR00927 872 EE E E EE EEEEEEEE E EE E N EE P L 894
PTZ00121 super family
cl31754 MAEBL; Provisional
77-627
1.69e-05
MAEBL; Provisional
PTZ00121 :Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 48.21
E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 77 K ERL E HK K AKEDFLVYKL EA QETLNKGRQDSNSRYS A LNVQHQMLKSQHE E LKKQHSDL E EEHR K QG E D fsrtfn DH K QK 156
Cdd:PTZ00121 1308 K KKA E EA K KADEAKKKAE EA KKKADAAKKKAEEAKK A AEAAKAEAEAAAD E AEAAEEKA E AAEK K KE E A ------ KK K AD 1381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 157 YLQLQQ E KEQELSKL K ETVYNLREENRQ L R KA HQD i HTQLQDV K TQVA E Y K QLKDTLNRIPSLR K P D P A EQQ n VTQVAHS 236
Cdd:PTZ00121 1382 AAKKKA E EKKKADEA K KKAEEDKKKADE L K KA AAA - KKKADEA K KKAE E K K KADEAKKKAEEAK K A D E A KKK - AEEAKKA 1459
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 237 PQGYNT A R E K pt REVQ E VSRNNDVWQNHEAVPGR AE DT K LY A - PTH K E AE FQAPPEPIQQEV E RREPE E HQVE EE HR KA L 315
Cdd:PTZ00121 1460 EEAKKK A E E A -- KKAD E AKKKAEEAKKADEAKKK AE EA K KK A d EAK K A AE AKKKADEAKKAE E AKKAD E AKKA EE AK KA D 1537
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 316 E EEEM E QVGQ A EH L EEEHDPSPE E QDREWK E QHEQR E AA N LLEGH A ---- R AE VYPSAKP M IKFQSPYEEQL E QQRL A VQ 391
Cdd:PTZ00121 1538 E AKKA E EKKK A DE L KKAEELKKA E EKKKAE E AKKAE E DK N MALRK A eeak K AE EARIEEV M KLYEEEKKMKA E EAKK A EE 1617
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 392 QVEE A QQ L REHQ E alhqqrlqghllrqqeqqqqq VAREMALQRQA E L EE GR pq HQ E Q L RQQ ahydamdndivqg A E DQG I 471
Cdd:PTZ00121 1618 AKIK A EE L KKAE E --------------------- EKKKVEQLKKK E A EE KK -- KA E E L KKA ------------- E E ENK I 1661
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 472 QGE E gay E RDNQHQ D EAEGDPGNRH E PR E QGPR EA DPESEADRAAV E DINPADDPNNQGED E FEE AE QVRE --- E NLPD E 548
Cdd:PTZ00121 1662 KAA E --- E AKKAEE D KKKAEEAKKA E ED E KKAA EA LKKEAEEAKKA E ELKKKEAEEKKKAE E LKK AE EENK ika E EAKK E 1738
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 815890944 549 N EE Q K QSNQKQENT E V E EHLVMAGNPDQQEDNVDEQYQE EA EE E VQE D LTE EK K R ELEHNAEETYGE N DE N TDDKNND G 627
Cdd:PTZ00121 1739 A EE D K KKAEEAKKD E E E KKKIAHLKKEEEKKAEEIRKEK EA VI E EEL D EED EK R R MEVDKKIKDIFD N FA N IIEGGKE G 1817
Name
Accession
Description
Interval
E-value
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
316-568
1.79e-07
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 54.62
E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 316 EE E E MEQVGQA E HL EE EHDPSPE E QDR E W K EQH E Q ------- R EAANLL EG HAR A EVYPSAKPMIKFQSPY E EQL E QQRL 388
Cdd:TIGR00927 647 EE G E RPTEAEG E NG EE SGGEAEQ E GET E T K GEN E S egeipae R KGEQEG EG EIE A KEADHKGETEAEEVEH E GET E AEGT 726
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 389 AVQQVE E AQQLR E HQ E ALHQQRLQ G hllrqqeqqqqqvar EMALQRQAELE E GRPQHQEQLRQQAHY D AMDNDIVQGA E D 468
Cdd:TIGR00927 727 EDEGEI E TGEEG E EV E DEGEGEAE G --------------- KHEVETEGDRK E TEHEGETEAEGKEDE D EGEIQAGEDG E M 791
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 469 Q G IQ G E EG AY E RDNQHQDEAEGDPGNRH E PREQGPREA D PES E ADRA A VEDINPAD D P --- NNQ G EDEFEEA E QVR EE NL 545
Cdd:TIGR00927 792 K G DE G A EG KV E HEGETEAGEKDEHEGQS E TQADDTEVK D ETG E QELN A ENQGEAKQ D E kgv DGG G GSDGGDS E EEE EE EE 871
250 260
....*....|....*....|...
gi 815890944 546 PD E N EE QKQSNQKQ E NT E V EE H L 568
Cdd:TIGR00927 872 EE E E EE EEEEEEEE E EE E N EE P L 894
PTZ00121
PTZ00121 MAEBL; Provisional
77-627
1.69e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 48.21
E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 77 K ERL E HK K AKEDFLVYKL EA QETLNKGRQDSNSRYS A LNVQHQMLKSQHE E LKKQHSDL E EEHR K QG E D fsrtfn DH K QK 156
Cdd:PTZ00121 1308 K KKA E EA K KADEAKKKAE EA KKKADAAKKKAEEAKK A AEAAKAEAEAAAD E AEAAEEKA E AAEK K KE E A ------ KK K AD 1381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 157 YLQLQQ E KEQELSKL K ETVYNLREENRQ L R KA HQD i HTQLQDV K TQVA E Y K QLKDTLNRIPSLR K P D P A EQQ n VTQVAHS 236
Cdd:PTZ00121 1382 AAKKKA E EKKKADEA K KKAEEDKKKADE L K KA AAA - KKKADEA K KKAE E K K KADEAKKKAEEAK K A D E A KKK - AEEAKKA 1459
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 237 PQGYNT A R E K pt REVQ E VSRNNDVWQNHEAVPGR AE DT K LY A - PTH K E AE FQAPPEPIQQEV E RREPE E HQVE EE HR KA L 315
Cdd:PTZ00121 1460 EEAKKK A E E A -- KKAD E AKKKAEEAKKADEAKKK AE EA K KK A d EAK K A AE AKKKADEAKKAE E AKKAD E AKKA EE AK KA D 1537
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 316 E EEEM E QVGQ A EH L EEEHDPSPE E QDREWK E QHEQR E AA N LLEGH A ---- R AE VYPSAKP M IKFQSPYEEQL E QQRL A VQ 391
Cdd:PTZ00121 1538 E AKKA E EKKK A DE L KKAEELKKA E EKKKAE E AKKAE E DK N MALRK A eeak K AE EARIEEV M KLYEEEKKMKA E EAKK A EE 1617
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 392 QVEE A QQ L REHQ E alhqqrlqghllrqqeqqqqq VAREMALQRQA E L EE GR pq HQ E Q L RQQ ahydamdndivqg A E DQG I 471
Cdd:PTZ00121 1618 AKIK A EE L KKAE E --------------------- EKKKVEQLKKK E A EE KK -- KA E E L KKA ------------- E E ENK I 1661
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 472 QGE E gay E RDNQHQ D EAEGDPGNRH E PR E QGPR EA DPESEADRAAV E DINPADDPNNQGED E FEE AE QVRE --- E NLPD E 548
Cdd:PTZ00121 1662 KAA E --- E AKKAEE D KKKAEEAKKA E ED E KKAA EA LKKEAEEAKKA E ELKKKEAEEKKKAE E LKK AE EENK ika E EAKK E 1738
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 815890944 549 N EE Q K QSNQKQENT E V E EHLVMAGNPDQQEDNVDEQYQE EA EE E VQE D LTE EK K R ELEHNAEETYGE N DE N TDDKNND G 627
Cdd:PTZ00121 1739 A EE D K KKAEEAKKD E E E KKKIAHLKKEEEKKAEEIRKEK EA VI E EEL D EED EK R R MEVDKKIKDIFD N FA N IIEGGKE G 1817
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
30-603
2.35e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 47.62
E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 30 A ML Y Y EL QTQ L RKA EA VA L ----- KYQQHQ E S L S A Q L QVVYEHRSR LE KS L QKERL E HKKAKEDFLVYK LE AQ E t LNKGR 104
Cdd:COG1196 212 A ER Y R EL KEE L KEL EA EL L llklr ELEAEL E E L E A E L EELEAELEE LE AE L AELEA E LEELRLELEELE LE LE E - AQAEE 290
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 105 QDSNSRYSA L NVQHQM L KSQHE EL KKQHSD LEEE HRKQG E DFS rtfn DHKQKYLQ L QQ E K E QELSK L K E TVYN L R E ENRQ 184
Cdd:COG1196 291 YELLAELAR L EQDIAR L EERRR EL EERLEE LEEE LAELE E ELE ---- ELEEELEE L EE E L E EAEEE L E E AEAE L A E AEEA 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 185 L RK A HQDIHTQLQDVKTQVA E YKQLKDTLNR ipslrkpdpa EQQNVTQVAHSPQGYNTAR E KPTR E VQ E VSRN ndvwqnh 264
Cdd:COG1196 367 L LE A EAELAEAEEELEELAE E LLEALRAAAE ---------- LAAQLEELEEAEEALLERL E RLEE E LE E LEEA ------- 429
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 265 eavpg R AE DTKLYAPTHKE aefqappepi QQ E VERR E P E EHQV EE EHRKA L E E EEM E QVGQAEH L E E EHDPSP E EQD R EW 344
Cdd:COG1196 430 ----- L AE LEEEEEEEEEA ---------- LE E AAEE E A E LEEE EE ALLEL L A E LLE E AALLEAA L A E LLEELA E AAA R LL 494
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 345 KEQHEQREAANL LEG HAR A EVYPSAKP ------- M I KFQSP YE EQ LE --- QQR L AVQQ VE EAQQLREHQ E A L HQQR ---- 410
Cdd:COG1196 495 LLLEAEADYEGF LEG VKA A LLLAGLRG lagavav L I GVEAA YE AA LE aal AAA L QNIV VE DDEVAAAAI E Y L KAAK agra 574
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 411 -- L QGHLL R QQEQQQQQV AR EMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGA E DQGIQGEEG A YERDNQHQDEA 488
Cdd:COG1196 575 tf L PLDKI R ARAALAAAL AR GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL E AALRRAVTL A GRLREVTLEGE 654
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 489 E G DP G NRHEPREQGPRE A DPESEADRAAVEDINP A DDPNNQG E DEFE E A E QV RE ENLPD E NEEQKQSNQKQENTEV E EHL 568
Cdd:COG1196 655 G G SA G GSLTGGSRRELL A ALLEAEAELEELAERL A EEELELE E ALLA E E E EE RE LAEAE E ERLEEELEEEALEEQL E AER 734
570 580 590
....*....|....*....|....*....|....*
gi 815890944 569 VMAGN p DQQ E DNVDEQYQEEA E EEVQE DL T E EKKR 603
Cdd:COG1196 735 EELLE - ELL E EEELLEEEALE E LPEPP DL E E LERE 768
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
34-213
7.37e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 42.74
E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 34 Y EL QTQLRKAEAVALKYQQHQES L SA Q L Q VVY E HRSR LE KS L QK -- ER LE HKKA K E D F L VYK L EAQ E T lnkgrqdsns RY 111
Cdd:TIGR02168 277 S EL EEEIEELQKELYALANEISR L EQ Q K Q ILR E RLAN LE RQ L EE le AQ LE ELES K L D E L AEE L AEL E E ---------- KL 346
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 112 SA L NVQHQM L KSQH EEL KKQHSD LE --- EE HRK Q G E DFSRTFNDHKQKYLQ L Q --- QEK E QE L SK L KETVYN L RE E NRQ L 185
Cdd:TIGR02168 347 EE L KEELES L EAEL EEL EAELEE LE srl EE LEE Q L E TLRSKVAQLELQIAS L N nei ERL E AR L ER L EDRRER L QQ E IEE L 426
170 180
....*....|....*....|....*...
gi 815890944 186 R K AHQD ih TQ L QDVKTQVA E YKQLKDT L 213
Cdd:TIGR02168 427 L K KLEE -- AE L KELQAELE E LEEELEE L 452
LCD1
pfam09798 DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ...
120-255
8.85e-03
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906
Cd Length: 615
Bit Score: 39.22
E-value: 8.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 120 ML KSQH E E L KKQ hsd L E E E HR K Q gedfsrtfndh K QK Y LQ L QQEK E Q EL S KLK ET V YN L RE E NRQ L RKAHQDIHTQLQDV 199
Cdd:pfam09798 1 ML RDKL E L L QQE --- K E K E LE K L ----------- K NS Y EE L KSSH E E EL E KLK QE V QK L ED E KKF L LNELRSLSATSPAS 66
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 815890944 200 KTQVAE yk QLK D TLNRIPSL RK PDPAEQQNVT Q vahspqgy NTA R EKPT R E V Q E V S 255
Cdd:pfam09798 67 SQSHET -- DTD D SSSVSLKK RK IEESTAESLK Q -------- KYI R LQNN R I V D E T S 112
Name
Accession
Description
Interval
E-value
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
316-568
1.79e-07
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 54.62
E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 316 EE E E MEQVGQA E HL EE EHDPSPE E QDR E W K EQH E Q ------- R EAANLL EG HAR A EVYPSAKPMIKFQSPY E EQL E QQRL 388
Cdd:TIGR00927 647 EE G E RPTEAEG E NG EE SGGEAEQ E GET E T K GEN E S egeipae R KGEQEG EG EIE A KEADHKGETEAEEVEH E GET E AEGT 726
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 389 AVQQVE E AQQLR E HQ E ALHQQRLQ G hllrqqeqqqqqvar EMALQRQAELE E GRPQHQEQLRQQAHY D AMDNDIVQGA E D 468
Cdd:TIGR00927 727 EDEGEI E TGEEG E EV E DEGEGEAE G --------------- KHEVETEGDRK E TEHEGETEAEGKEDE D EGEIQAGEDG E M 791
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 469 Q G IQ G E EG AY E RDNQHQDEAEGDPGNRH E PREQGPREA D PES E ADRA A VEDINPAD D P --- NNQ G EDEFEEA E QVR EE NL 545
Cdd:TIGR00927 792 K G DE G A EG KV E HEGETEAGEKDEHEGQS E TQADDTEVK D ETG E QELN A ENQGEAKQ D E kgv DGG G GSDGGDS E EEE EE EE 871
250 260
....*....|....*....|...
gi 815890944 546 PD E N EE QKQSNQKQ E NT E V EE H L 568
Cdd:TIGR00927 872 EE E E EE EEEEEEEE E EE E N EE P L 894
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
427-626
2.99e-06
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 50.76
E-value: 2.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 427 AREMALQRQA E L E EGRPQ H QEQLRQQAHY D AMD ndi VQGA E DQGIQGE EG AY E RDNQ H QD E A EGD pgn R H E PREQ G PR EA 506
Cdd:TIGR00927 699 IEAKEADHKG E T E AEEVE H EGETEAEGTE D EGE --- IETG E EGEEVED EG EG E AEGK H EV E T EGD --- R K E TEHE G ET EA 772
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 507 DPESEA D RAAVEDINPADDPNNQ G EDEFE E A E QVR E ENLP DE N E E Q KQSNQKQENTEV E EHLVMAGNPD Q Q E DNV DE QYQ 586
Cdd:TIGR00927 773 EGKEDE D EGEIQAGEDGEMKGDE G AEGKV E H E GET E AGEK DE H E G Q SETQADDTEVKD E TGEQELNAEN Q G E AKQ DE KGV 852
170 180 190 200
....*....|....*....|....*....|....*....|
gi 815890944 587 EEAEEEVQE D LT EE KKR E L E HNA EE TYG E ND E NTDDK N ND 626
Cdd:TIGR00927 853 DGGGGSDGG D SE EE EEE E E E EEE EE EEE E EE E EEEEE N EE 892
PTZ00121
PTZ00121 MAEBL; Provisional
77-627
1.69e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 48.21
E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 77 K ERL E HK K AKEDFLVYKL EA QETLNKGRQDSNSRYS A LNVQHQMLKSQHE E LKKQHSDL E EEHR K QG E D fsrtfn DH K QK 156
Cdd:PTZ00121 1308 K KKA E EA K KADEAKKKAE EA KKKADAAKKKAEEAKK A AEAAKAEAEAAAD E AEAAEEKA E AAEK K KE E A ------ KK K AD 1381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 157 YLQLQQ E KEQELSKL K ETVYNLREENRQ L R KA HQD i HTQLQDV K TQVA E Y K QLKDTLNRIPSLR K P D P A EQQ n VTQVAHS 236
Cdd:PTZ00121 1382 AAKKKA E EKKKADEA K KKAEEDKKKADE L K KA AAA - KKKADEA K KKAE E K K KADEAKKKAEEAK K A D E A KKK - AEEAKKA 1459
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 237 PQGYNT A R E K pt REVQ E VSRNNDVWQNHEAVPGR AE DT K LY A - PTH K E AE FQAPPEPIQQEV E RREPE E HQVE EE HR KA L 315
Cdd:PTZ00121 1460 EEAKKK A E E A -- KKAD E AKKKAEEAKKADEAKKK AE EA K KK A d EAK K A AE AKKKADEAKKAE E AKKAD E AKKA EE AK KA D 1537
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 316 E EEEM E QVGQ A EH L EEEHDPSPE E QDREWK E QHEQR E AA N LLEGH A ---- R AE VYPSAKP M IKFQSPYEEQL E QQRL A VQ 391
Cdd:PTZ00121 1538 E AKKA E EKKK A DE L KKAEELKKA E EKKKAE E AKKAE E DK N MALRK A eeak K AE EARIEEV M KLYEEEKKMKA E EAKK A EE 1617
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 392 QVEE A QQ L REHQ E alhqqrlqghllrqqeqqqqq VAREMALQRQA E L EE GR pq HQ E Q L RQQ ahydamdndivqg A E DQG I 471
Cdd:PTZ00121 1618 AKIK A EE L KKAE E --------------------- EKKKVEQLKKK E A EE KK -- KA E E L KKA ------------- E E ENK I 1661
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 472 QGE E gay E RDNQHQ D EAEGDPGNRH E PR E QGPR EA DPESEADRAAV E DINPADDPNNQGED E FEE AE QVRE --- E NLPD E 548
Cdd:PTZ00121 1662 KAA E --- E AKKAEE D KKKAEEAKKA E ED E KKAA EA LKKEAEEAKKA E ELKKKEAEEKKKAE E LKK AE EENK ika E EAKK E 1738
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 815890944 549 N EE Q K QSNQKQENT E V E EHLVMAGNPDQQEDNVDEQYQE EA EE E VQE D LTE EK K R ELEHNAEETYGE N DE N TDDKNND G 627
Cdd:PTZ00121 1739 A EE D K KKAEEAKKD E E E KKKIAHLKKEEEKKAEEIRKEK EA VI E EEL D EED EK R R MEVDKKIKDIFD N FA N IIEGGKE G 1817
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
30-603
2.35e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 47.62
E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 30 A ML Y Y EL QTQ L RKA EA VA L ----- KYQQHQ E S L S A Q L QVVYEHRSR LE KS L QKERL E HKKAKEDFLVYK LE AQ E t LNKGR 104
Cdd:COG1196 212 A ER Y R EL KEE L KEL EA EL L llklr ELEAEL E E L E A E L EELEAELEE LE AE L AELEA E LEELRLELEELE LE LE E - AQAEE 290
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 105 QDSNSRYSA L NVQHQM L KSQHE EL KKQHSD LEEE HRKQG E DFS rtfn DHKQKYLQ L QQ E K E QELSK L K E TVYN L R E ENRQ 184
Cdd:COG1196 291 YELLAELAR L EQDIAR L EERRR EL EERLEE LEEE LAELE E ELE ---- ELEEELEE L EE E L E EAEEE L E E AEAE L A E AEEA 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 185 L RK A HQDIHTQLQDVKTQVA E YKQLKDTLNR ipslrkpdpa EQQNVTQVAHSPQGYNTAR E KPTR E VQ E VSRN ndvwqnh 264
Cdd:COG1196 367 L LE A EAELAEAEEELEELAE E LLEALRAAAE ---------- LAAQLEELEEAEEALLERL E RLEE E LE E LEEA ------- 429
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 265 eavpg R AE DTKLYAPTHKE aefqappepi QQ E VERR E P E EHQV EE EHRKA L E E EEM E QVGQAEH L E E EHDPSP E EQD R EW 344
Cdd:COG1196 430 ----- L AE LEEEEEEEEEA ---------- LE E AAEE E A E LEEE EE ALLEL L A E LLE E AALLEAA L A E LLEELA E AAA R LL 494
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 345 KEQHEQREAANL LEG HAR A EVYPSAKP ------- M I KFQSP YE EQ LE --- QQR L AVQQ VE EAQQLREHQ E A L HQQR ---- 410
Cdd:COG1196 495 LLLEAEADYEGF LEG VKA A LLLAGLRG lagavav L I GVEAA YE AA LE aal AAA L QNIV VE DDEVAAAAI E Y L KAAK agra 574
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 411 -- L QGHLL R QQEQQQQQV AR EMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGA E DQGIQGEEG A YERDNQHQDEA 488
Cdd:COG1196 575 tf L PLDKI R ARAALAAAL AR GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL E AALRRAVTL A GRLREVTLEGE 654
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 489 E G DP G NRHEPREQGPRE A DPESEADRAAVEDINP A DDPNNQG E DEFE E A E QV RE ENLPD E NEEQKQSNQKQENTEV E EHL 568
Cdd:COG1196 655 G G SA G GSLTGGSRRELL A ALLEAEAELEELAERL A EEELELE E ALLA E E E EE RE LAEAE E ERLEEELEEEALEEQL E AER 734
570 580 590
....*....|....*....|....*....|....*
gi 815890944 569 VMAGN p DQQ E DNVDEQYQEEA E EEVQE DL T E EKKR 603
Cdd:COG1196 735 EELLE - ELL E EEELLEEEALE E LPEPP DL E E LERE 768
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
35-539
4.68e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 46.85
E-value: 4.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 35 E L Q TQLRKAE A VALKYQ Q HQES L SAQLQVVY E HRSR LE KS L QKERL E HKKAK E DFLVYKL E AQ E TLNKGRQDSNSRYS A L 114
Cdd:COG1196 285 E A Q AEEYELL A ELARLE Q DIAR L EERRRELE E RLEE LE EE L AELEE E LEELE E ELEELEE E LE E AEEELEEAEAELAE A E 364
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 115 NVQHQMLKSQH E ELKKQHSDL EE EHRKQGE df SRTFNDHKQKYLQLQQEKEQE L SK L K E TVYN L R E ENRQ L RKAHQDIHT 194
Cdd:COG1196 365 EALLEAEAELA E AEEELEELA EE LLEALRA -- AAELAAQLEELEEAEEALLER L ER L E E ELEE L E E ALAE L EEEEEEEEE 442
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 195 Q L QDVKTQV AE YKQLKDT L NRIPSLRKPDP A EQQNVTQVAHSPQGYNT AR EKPTR E VQEVSR - NNDVWQNHEAVP G RAED 273
Cdd:COG1196 443 A L EEAAEEE AE LEEEEEA L LELLAELLEEA A LLEAALAELLEELAEAA AR LLLLL E AEADYE g FLEGVKAALLLA G LRGL 522
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 274 TKLY A ----- PTHK EA EFQ A PPEPIQ Q EVERREP E EHQVEE E HR KA ----- LEEEEMEQVGQAEH L EEEHDPSPEEQDR - 342
Cdd:COG1196 523 AGAV A vligv EAAY EA ALE A ALAAAL Q NIVVEDD E VAAAAI E YL KA akagr ATFLPLDKIRARAA L AAALARGAIGAAV d 602
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 343 --- EWKEQHEQ R EAANLLEGHA R AE V YPSAKPMIKFQSPYEEQ L EQQR L AVQQVEEAQQ L REHQEALHQQR L QGHLLRQQ 419
Cdd:COG1196 603 lva SDLREADA R YYVLGDTLLG R TL V AARLEAALRRAVTLAGR L REVT L EGEGGSAGGS L TGGSRRELLAA L LEAEAELE 682
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 420 E QQQQQVAR E MA L QRQAEL EE GRPQHQEQLRQQAHYDAMDNDIVQGAEDQGIQGEEGAYERDNQHQD E AEGDPGNRHEPR 499
Cdd:COG1196 683 E LAERLAEE E LE L EEALLA EE EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE E EALEELPEPPDL 762
490 500 510 520
....*....|....*....|....*....|....*....|
gi 815890944 500 E QGP RE AD p ES E ADRA A VEDI N PA ddpnnq GED E F EE A E Q 539
Cdd:COG1196 763 E ELE RE LE - RL E REIE A LGPV N LL ------ AIE E Y EE L E E 795
PTZ00121
PTZ00121 MAEBL; Provisional
35-564
4.76e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 47.06
E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 35 E LQTQLR K AE A V A L K YQQHQESLSAQLQVVY E HRSRLEKS L Q K ERLEH KKA K E ----------- D FLVY K L E AQETLNKG 103
Cdd:PTZ00121 1370 E KKKEEA K KK A D A A K KKAEEKKKADEAKKKA E EDKKKADE L K K AAAAK KKA D E akkkaeekkka D EAKK K A E EAKKADEA 1449
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 104 RQDSNSRYS A LNVQHQM - LKSQHE E L KK QHSDLE -- E E HR K QG E DFSRTFNDH K QK yl QLQQE K EQ E LS K LK E tvynl RE 180
Cdd:PTZ00121 1450 KKKAEEAKK A EEAKKKA e EAKKAD E A KK KAEEAK ka D E AK K KA E EAKKKADEA K KA -- AEAKK K AD E AK K AE E ----- AK 1522
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 181 ENRQLR KA HQDIHTQ lqdv KTQV AE Y K QLK D T L NRIPS L R K PDPAEQQNVTQV A HSPQGYNTAREKPTREVQ E VSRNNDV 260
Cdd:PTZ00121 1523 KADEAK KA EEAKKAD ---- EAKK AE E K KKA D E L KKAEE L K K AEEKKKAEEAKK A EEDKNMALRKAEEAKKAE E ARIEEVM 1598
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 261 WQNH E AVPGR AE DT K LYAPTHKE AE FQAPP E PIQQE VE RREPE E HQVEEEHRKALEE EE MEQVGQ AE -- HLE EE HDPSP E 338
Cdd:PTZ00121 1599 KLYE E EKKMK AE EA K KAEEAKIK AE ELKKA E EEKKK VE QLKKK E AEEKKKAEELKKA EE ENKIKA AE ea KKA EE DKKKA E 1678
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 339 E QDREWKEQHEQR EA ANLLEGH A RA -- E VYPSAKPMI K FQSPYEEQL E QQRLAVQQVE - EA QQLREHQ E ALHQQRLQGHL 415
Cdd:PTZ00121 1679 E AKKAEEDEKKAA EA LKKEAEE A KK ae E LKKKEAEEK K KAEELKKAE E ENKIKAEEAK k EA EEDKKKA E EAKKDEEEKKK 1758
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 416 LRQQEQQQQQV A R E MALQRQ A EL EE GRPQHQ E QL R QQAHY --- D AM DN -- D I VQ G AEDQGIQGEEGAYER D NQHQDE A EG 490
Cdd:PTZ00121 1759 IAHLKKEEEKK A E E IRKEKE A VI EE ELDEED E KR R MEVDK kik D IF DN fa N I IE G GKEGNLVINDSKEME D SAIKEV A DS 1838
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 815890944 491 DPGNRH E PR -- E QGPREADP E SEA D RAAVE D I N PAD D PNNQG E D E F EEA EQVREENLP D ENE E QKQS N QKQE N TEV 564
Cdd:PTZ00121 1839 KNMQLE E AD af E KHKFNKNN E NGE D GNKEA D F N KEK D LKEDD E E E I EEA DEIEKIDKD D IER E IPNN N MAGK N NDI 1914
PTZ00121
PTZ00121 MAEBL; Provisional
121-639
1.67e-04
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 45.13
E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 121 L K SQH EE L KK QHSDLEE -- E HR K QGEDFSRTFNDHKQKYLQLQQ EK ---- E QELSKL K ETVYNLREENRQLR KA hqdiht 194
Cdd:PTZ00121 1320 A K KKA EE A KK KADAAKK ka E EA K KAAEAAKAEAEAAADEAEAAE EK aeaa E KKKEEA K KKADAAKKKAEEKK KA ------ 1393
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 195 ql QDV K TQVA E Y K QLK D T L NRIPSLR K PDPAEQQNVTQVAHSPQGYNT A R E K pt REVQ E VSRNNDVWQNH E AVPGR AE DT 274
Cdd:PTZ00121 1394 -- DEA K KKAE E D K KKA D E L KKAAAAK K KADEAKKKAEEKKKADEAKKK A E E A -- KKAD E AKKKAEEAKKA E EAKKK AE EA 1469
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 275 K LYAPTH K E AE FQAPPEPIQQEV E RREPEEHQVEEEHRKALEEE E MEQVGQ A EHLE E EHDPSPEEQDR E W K EQH E QRE A A 354
Cdd:PTZ00121 1470 K KADEAK K K AE EAKKADEAKKKA E EAKKKADEAKKAAEAKKKAD E AKKAEE A KKAD E AKKAEEAKKAD E A K KAE E KKK A D 1549
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 355 N L legh AR AE VYPS A KPMI K FQSPYEEQ l E QQRL A VQQV EEA QQLR E H qealhqqrlqghll R QQ E QQQQQVAREMALQR 434
Cdd:PTZ00121 1550 E L ---- KK AE ELKK A EEKK K AEEAKKAE - E DKNM A LRKA EEA KKAE E A -------------- R IE E VMKLYEEEKKMKAE 1610
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 435 Q A ELE E GRPQHQ E Q L RQQAHYDAMDNDIVQGAEDQGIQG EE gayerdnqh QDE AE GDPGNRHEPREQGPR E ADPES E ADR 514
Cdd:PTZ00121 1611 E A KKA E EAKIKA E E L KKAEEEKKKVEQLKKKEAEEKKKA EE --------- LKK AE EENKIKAAEEAKKAE E DKKKA E EAK 1681
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 515 A A V ED INP A DDPNNQGED E FEE AE QVREE nlpd E N EE Q K QSNQKQENT E VEEHLVMAGNPDQQ ED nvdeqyqee AEEEVQ 594
Cdd:PTZ00121 1682 K A E ED EKK A AEALKKEAE E AKK AE ELKKK ---- E A EE K K KAEELKKAE E ENKIKAEEAKKEAE ED --------- KKKAEE 1748
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 815890944 595 EDLT EE K K RELE H NAE E TYGEND E NTDD K NNDG EE QEVRD D NRPK 639
Cdd:PTZ00121 1749 AKKD EE E K KKIA H LKK E EEKKAE E IRKE K EAVI EE ELDEE D EKRR 1793
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
34-213
7.37e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 42.74
E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 34 Y EL QTQLRKAEAVALKYQQHQES L SA Q L Q VVY E HRSR LE KS L QK -- ER LE HKKA K E D F L VYK L EAQ E T lnkgrqdsns RY 111
Cdd:TIGR02168 277 S EL EEEIEELQKELYALANEISR L EQ Q K Q ILR E RLAN LE RQ L EE le AQ LE ELES K L D E L AEE L AEL E E ---------- KL 346
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 112 SA L NVQHQM L KSQH EEL KKQHSD LE --- EE HRK Q G E DFSRTFNDHKQKYLQ L Q --- QEK E QE L SK L KETVYN L RE E NRQ L 185
Cdd:TIGR02168 347 EE L KEELES L EAEL EEL EAELEE LE srl EE LEE Q L E TLRSKVAQLELQIAS L N nei ERL E AR L ER L EDRRER L QQ E IEE L 426
170 180
....*....|....*....|....*...
gi 815890944 186 R K AHQD ih TQ L QDVKTQVA E YKQLKDT L 213
Cdd:TIGR02168 427 L K KLEE -- AE L KELQAELE E LEEELEE L 452
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
426-632
1.33e-03
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 41.90
E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 426 VA RE MAL QRQAELEEGRPQ H QE qlrqqahy DAMDNDIVQGA E DQ G IQ GEE GAY E RDNQHQD E AE G D pg N RH E PREQGP R E 505
Cdd:TIGR00927 621 VA KV MAL GDLSKGDVAEAE H TG -------- ERTGEEGERPT E AE G EN GEE SGG E AEQEGET E TK G E -- N ES E GEIPAE R K 690
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 506 ADP E S E ADRA A V E dinp AD DPNNQGED E F E EAEQVRE E NLP DE N E EQKQSNQKQENT E V E EHLVMAGNPDQQE D NVDEQY 585
Cdd:TIGR00927 691 GEQ E G E GEIE A K E ---- AD HKGETEAE E V E HEGETEA E GTE DE G E IETGEEGEEVED E G E GEAEGKHEVETEG D RKETEH 766
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 815890944 586 QE E aeeevqedl TE EKKR E L E HNA E ETY GE ND E N tdd K NND G E E QE V 632
Cdd:TIGR00927 767 EG E --------- TE AEGK E D E DEG E IQA GE DG E M --- K GDE G A E GK V 801
LCD1
pfam09798 DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ...
120-255
8.85e-03
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906
Cd Length: 615
Bit Score: 39.22
E-value: 8.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890944 120 ML KSQH E E L KKQ hsd L E E E HR K Q gedfsrtfndh K QK Y LQ L QQEK E Q EL S KLK ET V YN L RE E NRQ L RKAHQDIHTQLQDV 199
Cdd:pfam09798 1 ML RDKL E L L QQE --- K E K E LE K L ----------- K NS Y EE L KSSH E E EL E KLK QE V QK L ED E KKF L LNELRSLSATSPAS 66
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 815890944 200 KTQVAE yk QLK D TLNRIPSL RK PDPAEQQNVT Q vahspqgy NTA R EKPT R E V Q E V S 255
Cdd:pfam09798 67 SQSHET -- DTD D SSSVSLKK RK IEESTAESLK Q -------- KYI R LQNN R I V D E T S 112
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
