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Conserved domains on  [gi|890827721|ref|NP_001297534|]
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polyamine-modulated factor 1 isoform 2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nnf1 super family cl04354
Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is ...
 52-97 1.03e-05

Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND.


The actual alignment was detected with superfamily member pfam03980:

Pssm-ID: 461118  Cd Length: 103  Bit Score: 41.46  E-value: 1.03e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 890827721   52 RPSGIPEKDLCSVMAPYFLKQQDTLCHQVRKQEAKNQELADAVLAG 97
Cdd:pfam03980  58 RPSVPPEELIRAHLAPYKQKQLEQLNARLQKLEAENAALAEEVQAQ 103
 
Name Accession Description Interval E-value
Nnf1 pfam03980
Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is ...
 52-97 1.03e-05

Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND.


Pssm-ID: 461118  Cd Length: 103  Bit Score: 41.46  E-value: 1.03e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 890827721   52 RPSGIPEKDLCSVMAPYFLKQQDTLCHQVRKQEAKNQELADAVLAG 97
Cdd:pfam03980  58 RPSVPPEELIRAHLAPYKQKQLEQLNARLQKLEAENAALAEEVQAQ 103
 
Name Accession Description Interval E-value
Nnf1 pfam03980
Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is ...
 52-97 1.03e-05

Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND.


Pssm-ID: 461118  Cd Length: 103  Bit Score: 41.46  E-value: 1.03e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 890827721   52 RPSGIPEKDLCSVMAPYFLKQQDTLCHQVRKQEAKNQELADAVLAG 97
Cdd:pfam03980  58 RPSVPPEELIRAHLAPYKQKQLEQLNARLQKLEAENAALAEEVQAQ 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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