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Conserved domains on  [gi|952009231|ref|NP_001304002|]
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protein-lysine 6-oxidase isoform 3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Lysyl_oxidase super family cl03127
Lysyl oxidase;
1-115 8.74e-73

Lysyl oxidase;


The actual alignment was detected with superfamily member pfam01186:

Pssm-ID: 460102  Cd Length: 204  Bit Score: 215.22  E-value: 8.74e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 952009231    1 MDEFSHYDLLDANtQRRVAEGHKASFCLEDTSCDYGYHRRFACTAHT-QGLSPGCYDTYGADIDCQWIDITDVKPGNYIL 79
Cdd:pfam01186  90 MEVFAHYDVLDLN-GTKVAEGHKASFCLEDTECDPGVSKRYACANFGdQGISVGCWDTYRHDIDCQWIDITDVPPGNYIL 168
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 952009231   80 KVSVNPSYLVPESDYTNNVVRCDIRYTGHHAYASGC 115
Cdd:pfam01186 169 KVVINPEFKVAESDFDNNAARCDLRYTGHRVWVYNC 204
 
Name Accession Description Interval E-value
Lysyl_oxidase pfam01186
Lysyl oxidase;
1-115 8.74e-73

Lysyl oxidase;


Pssm-ID: 460102  Cd Length: 204  Bit Score: 215.22  E-value: 8.74e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 952009231    1 MDEFSHYDLLDANtQRRVAEGHKASFCLEDTSCDYGYHRRFACTAHT-QGLSPGCYDTYGADIDCQWIDITDVKPGNYIL 79
Cdd:pfam01186  90 MEVFAHYDVLDLN-GTKVAEGHKASFCLEDTECDPGVSKRYACANFGdQGISVGCWDTYRHDIDCQWIDITDVPPGNYIL 168
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 952009231   80 KVSVNPSYLVPESDYTNNVVRCDIRYTGHHAYASGC 115
Cdd:pfam01186 169 KVVINPEFKVAESDFDNNAARCDLRYTGHRVWVYNC 204
 
Name Accession Description Interval E-value
Lysyl_oxidase pfam01186
Lysyl oxidase;
1-115 8.74e-73

Lysyl oxidase;


Pssm-ID: 460102  Cd Length: 204  Bit Score: 215.22  E-value: 8.74e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 952009231    1 MDEFSHYDLLDANtQRRVAEGHKASFCLEDTSCDYGYHRRFACTAHT-QGLSPGCYDTYGADIDCQWIDITDVKPGNYIL 79
Cdd:pfam01186  90 MEVFAHYDVLDLN-GTKVAEGHKASFCLEDTECDPGVSKRYACANFGdQGISVGCWDTYRHDIDCQWIDITDVPPGNYIL 168
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 952009231   80 KVSVNPSYLVPESDYTNNVVRCDIRYTGHHAYASGC 115
Cdd:pfam01186 169 KVVINPEFKVAESDFDNNAARCDLRYTGHRVWVYNC 204
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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