charged multivesicular body protein 7 isoform 2 [Homo sapiens]
Protein Classification
SNF7 family protein( domain architecture ID 229656)
SNF7 family protein may be involved in protein sorting and transport from the endosome to the vacuole/lysosome
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| Snf7 super family | cl47805 | Snf7; This family of proteins are involved in protein sorting and transport from the endosome ... |
133-292 | 6.48e-21 | ||||
Snf7; This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localization, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. The actual alignment was detected with superfamily member pfam03357: Pssm-ID: 460896 [Multi-domain] Cd Length: 168 Bit Score: 88.06 E-value: 6.48e-21
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| Name | Accession | Description | Interval | E-value | ||||
| Snf7 | pfam03357 | Snf7; This family of proteins are involved in protein sorting and transport from the endosome ... |
133-292 | 6.48e-21 | ||||
Snf7; This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localization, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Pssm-ID: 460896 [Multi-domain] Cd Length: 168 Bit Score: 88.06 E-value: 6.48e-21
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| PTZ00464 | PTZ00464 | SNF-7-like protein; Provisional |
141-285 | 2.63e-06 | ||||
SNF-7-like protein; Provisional Pssm-ID: 240425 [Multi-domain] Cd Length: 211 Bit Score: 47.50 E-value: 2.63e-06
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| Name | Accession | Description | Interval | E-value | ||||
| Snf7 | pfam03357 | Snf7; This family of proteins are involved in protein sorting and transport from the endosome ... |
133-292 | 6.48e-21 | ||||
Snf7; This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localization, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Pssm-ID: 460896 [Multi-domain] Cd Length: 168 Bit Score: 88.06 E-value: 6.48e-21
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| PTZ00464 | PTZ00464 | SNF-7-like protein; Provisional |
141-285 | 2.63e-06 | ||||
SNF-7-like protein; Provisional Pssm-ID: 240425 [Multi-domain] Cd Length: 211 Bit Score: 47.50 E-value: 2.63e-06
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| PTZ00446 | PTZ00446 | vacuolar sorting protein SNF7-like; Provisional |
141-286 | 2.59e-05 | ||||
vacuolar sorting protein SNF7-like; Provisional Pssm-ID: 240422 [Multi-domain] Cd Length: 191 Bit Score: 44.33 E-value: 2.59e-05
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| PspA_IM30 | pfam04012 | PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
133-193 | 1.44e-03 | ||||
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator. Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 39.28 E-value: 1.44e-03
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| Blast search parameters | ||||
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