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Conserved domains on  [gi|964750848|ref|NP_001304891|]
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periodic tryptophan protein 1 homolog isoform 2 [Homo sapiens]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
137-400 1.13e-26

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 110.77  E-value: 1.13e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 137 SPDdstGNYIAVGNMTPVIEVWDLDivdSLEPVFTLgsklskkkkkkgkksssaEGHTDAVLDLSWN---KLirnvLASA 213
Cdd:COG2319  129 SPD---GKTLASGSADGTVRLWDLA---TGKLLRTL------------------TGHSGAVTSVAFSpdgKL----LASG 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 214 SADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPfEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTwnhFSP 293
Cdd:COG2319  181 SDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVA---FSP 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 294 -CHFLAST-DDGFVYNLDARSDKPIFTLNAHNDEISGLDLS--SQIkgcLVTASADKYVKIWDILGDRP--SLVHSRDMK 367
Cdd:COG2319  257 dGRLLASGsADGTVRLWDLATGELLRTLTGHSGGVNSVAFSpdGKL---LASGSDDGTVRLWDLATGKLlrTLTGHTGAV 333

                        250       260       270
                 ....*....|....*....|....*....|...
gi 964750848 368 MGVLFcsscCPDLPFIyAFGGQKEGLRVWDIST 400
Cdd:COG2319  334 RSVAF----SPDGKTL-ASGSDDGTVRLWDLAT 361
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
137-400 1.13e-26

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 110.77  E-value: 1.13e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 137 SPDdstGNYIAVGNMTPVIEVWDLDivdSLEPVFTLgsklskkkkkkgkksssaEGHTDAVLDLSWN---KLirnvLASA 213
Cdd:COG2319  129 SPD---GKTLASGSADGTVRLWDLA---TGKLLRTL------------------TGHSGAVTSVAFSpdgKL----LASG 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 214 SADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPfEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTwnhFSP 293
Cdd:COG2319  181 SDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVA---FSP 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 294 -CHFLAST-DDGFVYNLDARSDKPIFTLNAHNDEISGLDLS--SQIkgcLVTASADKYVKIWDILGDRP--SLVHSRDMK 367
Cdd:COG2319  257 dGRLLASGsADGTVRLWDLATGELLRTLTGHSGGVNSVAFSpdGKL---LASGSDDGTVRLWDLATGKLlrTLTGHTGAV 333

                        250       260       270
                 ....*....|....*....|....*....|...
gi 964750848 368 MGVLFcsscCPDLPFIyAFGGQKEGLRVWDIST 400
Cdd:COG2319  334 RSVAF----SPDGKTL-ASGSDDGTVRLWDLAT 361
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 191-424 6.95e-26

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 106.27  E-value: 6.95e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 191 EGHTDAVLDLSWNKlIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFeAQTLISGSYDKSVALYDCRSP 270
Cdd:cd00200    6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 271 DESHrmwRFSGQIERVTWNHFSPCHFLAST--DDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQiKGCLVTASADKYV 348
Cdd:cd00200   84 ECVR---TLTGHTSYVSSVAFSPDGRILSSssRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 349 KIWDILGDRPSLVHSrDMKMGVlFCSSCCPDLPFIYAFGGQKEgLRVWDISTVSSVNE-----------AFGRRERLVLG 417
Cdd:cd00200  160 KLWDLRTGKCVATLT-GHTGEV-NSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTlrghengvnsvAFSPDGYLLAS 236


                 ....*..
gi 964750848 418 SARNSSI 424
Cdd:cd00200  237 GSEDGTI 243
PTZ00420 PTZ00420
coronin; Provisional
 191-266 1.86e-06

coronin; Provisional


Pssm-ID: 240412 [Multi-domain]  Cd Length: 568  Bit Score: 49.95  E-value: 1.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 191 EGHTDAVLDLSWNKLIRNVLASASADNTVILWDM--------SLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSV 262
Cdd:PTZ00420  71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIphndesvkEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150


                 ....
gi 964750848 263 ALYD 266
Cdd:PTZ00420 151 NIWD 154
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 312-352 3.25e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 40.76  E-value: 3.25e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 964750848   312 SDKPIFTLNAHNDEISGLDLSSQIKgCLVTASADKYVKIWD 352
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
314-352 5.60e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 37.32  E-value: 5.60e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 964750848  314 KPIFTLNAHNDEISGLDLSSQiKGCLVTASADKYVKIWD 352
Cdd:pfam00400   2 KLLKTLEGHTGSVTSLAFSPD-GKLLASGSDDGTVKVWD 39
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
137-400 1.13e-26

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 110.77  E-value: 1.13e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 137 SPDdstGNYIAVGNMTPVIEVWDLDivdSLEPVFTLgsklskkkkkkgkksssaEGHTDAVLDLSWN---KLirnvLASA 213
Cdd:COG2319  129 SPD---GKTLASGSADGTVRLWDLA---TGKLLRTL------------------TGHSGAVTSVAFSpdgKL----LASG 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 214 SADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPfEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTwnhFSP 293
Cdd:COG2319  181 SDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVA---FSP 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 294 -CHFLAST-DDGFVYNLDARSDKPIFTLNAHNDEISGLDLS--SQIkgcLVTASADKYVKIWDILGDRP--SLVHSRDMK 367
Cdd:COG2319  257 dGRLLASGsADGTVRLWDLATGELLRTLTGHSGGVNSVAFSpdGKL---LASGSDDGTVRLWDLATGKLlrTLTGHTGAV 333

                        250       260       270
                 ....*....|....*....|....*....|...
gi 964750848 368 MGVLFcsscCPDLPFIyAFGGQKEGLRVWDIST 400
Cdd:COG2319  334 RSVAF----SPDGKTL-ASGSDDGTVRLWDLAT 361
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 191-424 6.95e-26

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 106.27  E-value: 6.95e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 191 EGHTDAVLDLSWNKlIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFeAQTLISGSYDKSVALYDCRSP 270
Cdd:cd00200    6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 271 DESHrmwRFSGQIERVTWNHFSPCHFLAST--DDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQiKGCLVTASADKYV 348
Cdd:cd00200   84 ECVR---TLTGHTSYVSSVAFSPDGRILSSssRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 349 KIWDILGDRPSLVHSrDMKMGVlFCSSCCPDLPFIYAFGGQKEgLRVWDISTVSSVNE-----------AFGRRERLVLG 417
Cdd:cd00200  160 KLWDLRTGKCVATLT-GHTGEV-NSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTlrghengvnsvAFSPDGYLLAS 236


                 ....*..
gi 964750848 418 SARNSSI 424
Cdd:cd00200  237 GSEDGTI 243
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 191-352 7.16e-26

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 106.27  E-value: 7.16e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 191 EGHTDAVLDLSWNKlIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPfEAQTLISGSYDKSVALYDCRSP 270
Cdd:cd00200  132 RGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 271 DESHRmwrFSGQIERVTWNHFSPCH--FLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKgCLVTASADKYV 348
Cdd:cd00200  210 KCLGT---LRGHENGVNSVAFSPDGylLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTI 285


                 ....
gi 964750848 349 KIWD 352
Cdd:cd00200  286 RIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 141-397 2.78e-24

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 102.03  E-value: 2.78e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 141 STGNYIAVGNMTPVIEVWDLDivdSLEPVFTLgsklskkkkkkgkksssaEGHTDAVLDLSWNKLIRnVLASASADNTVI 220
Cdd:cd00200   61 ADGTYLASGSSDKTIRLWDLE---TGECVRTL------------------TGHTSYVSSVAFSPDGR-ILSSSSRDKTIK 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 221 LWDMSLGKPAASLAVHTDKVQTLQFHPFEaQTLISGSYDKSVALYDcrsPDESHRMWRFSGQIERVTWNHFSP--CHFLA 298
Cdd:cd00200  119 VWDVETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWD---LRTGKCVATLTGHTGEVNSVAFSPdgEKLLS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 299 STDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQiKGCLVTASADKYVKIWDILGDRPSLV---HSRDmkmgvLFCSS 375
Cdd:cd00200  195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTlsgHTNS-----VTSLA 268

                        250       260
                 ....*....|....*....|..
gi 964750848 376 CCPDLPFIYAfGGQKEGLRVWD 397
Cdd:cd00200  269 WSPDGKRLAS-GSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
122-353 4.06e-24

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 103.45  E-value: 4.06e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 122 LSAYPLSVEWLNFdpSPDdstGNYIAVGNMTPVIEVWDldiVDSLEPVFTLgsklskkkkkkgkksssaEGHTDAVLDLS 201
Cdd:COG2319  200 LTGHTGAVRSVAF--SPD---GKLLASGSADGTVRLWD---LATGKLLRTL------------------TGHSGSVRSVA 253

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 202 WN---KLirnvLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPfEAQTLISGSYDKSVALYDCRSPDESHRMWR 278
Cdd:COG2319  254 FSpdgRL----LASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSP-DGKLLASGSDDGTVRLWDLATGKLLRTLTG 328

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 964750848 279 FSGQIERVTwnhFSPC-HFLAS-TDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQikGC-LVTASADKYVKIWDI 353
Cdd:COG2319  329 HTGAVRSVA---FSPDgKTLASgSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPD--GRtLASGSADGTVRLWDL 401
WD40 COG2319
WD40 repeat [General function prediction only];
190-400 1.17e-23

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 102.30  E-value: 1.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 190 AEGHTDAVLDLSWNkLIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPfEAQTLISGSYDKSVALYDcrs 269
Cdd:COG2319   74 LLGHTAAVLSVAFS-PDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSP-DGKTLASGSADGTVRLWD--- 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 270 PDESHRMWRFSGQIERVTWNHFSP-CHFLAST-DDGFVYNLDARSDKPIFTLNAHNDEISGLDLS--SQIkgcLVTASAD 345
Cdd:COG2319  149 LATGKLLRTLTGHSGAVTSVAFSPdGKLLASGsDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSpdGKL---LASGSAD 225

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 964750848 346 KYVKIWDILGDRP--SLVHSRDMKMGVLFcSsccPDLPFIyAFGGQKEGLRVWDIST 400
Cdd:COG2319  226 GTVRLWDLATGKLlrTLTGHSGSVRSVAF-S---PDGRLL-ASGSADGTVRLWDLAT 277
WD40 COG2319
WD40 repeat [General function prediction only];
190-400 5.88e-18

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 85.35  E-value: 5.88e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 190 AEGHTDAVLDLSWNkLIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPfEAQTLISGSYDKSVALYDCRS 269
Cdd:COG2319   32 LLGLAAAVASLAAS-PDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSP-DGRLLASASADGTVRLWDLAT 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 270 PDESHRMWRFSGQIERVTwnhFSP-CHFLAST-DDGFVYNLDARSDKPIFTLNAHNDEISGLDLS--SQIkgcLVTASAD 345
Cdd:COG2319  110 GLLLRTLTGHTGAVRSVA---FSPdGKTLASGsADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSpdGKL---LASGSDD 183

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 964750848 346 KYVKIWDILGDRpsLVHSRDMKMGVLFCSSCCPDLPFIyAFGGQKEGLRVWDIST 400
Cdd:COG2319  184 GTVRLWDLATGK--LLRTLTGHTGAVRSVAFSPDGKLL-ASGSADGTVRLWDLAT 235
PTZ00420 PTZ00420
coronin; Provisional
 191-266 1.86e-06

coronin; Provisional


Pssm-ID: 240412 [Multi-domain]  Cd Length: 568  Bit Score: 49.95  E-value: 1.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 191 EGHTDAVLDLSWNKLIRNVLASASADNTVILWDM--------SLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSV 262
Cdd:PTZ00420  71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIphndesvkEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150


                 ....
gi 964750848 263 ALYD 266
Cdd:PTZ00420 151 NIWD 154
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 200-353 1.88e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 50.47  E-value: 1.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 200 LSWNKLIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRS---------- 269
Cdd:PLN00181 538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQgvsigtiktk 617

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 270 --------PDESHRMWRFsgqiervtwnhfspchflaSTDDGFVYNLDARSDK-PIFTLNAHNDEISGLDLSSQikGCLV 340
Cdd:PLN00181 618 aniccvqfPSESGRSLAF-------------------GSADHKVYYYDLRNPKlPLCTMIGHSKTVSYVRFVDS--STLV 676

                        170
                 ....*....|...
gi 964750848 341 TASADKYVKIWDI 353
Cdd:PLN00181 677 SSSTDNTLKLWDL 689
PTZ00421 PTZ00421
coronin; Provisional
 191-288 2.27e-06

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 49.89  E-value: 2.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 191 EGHTDAVLDLSWNKLIRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHpFEAQTLISGSYDKSVALYDCRSP 270
Cdd:PTZ00421 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPRDG 200

                         90       100
                 ....*....|....*....|...
gi 964750848 271 D-----ESHRmwrfSGQIERVTW 288
Cdd:PTZ00421 201 TivssvEAHA----SAKSQRCLW 219
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 312-352 3.25e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 40.76  E-value: 3.25e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 964750848   312 SDKPIFTLNAHNDEISGLDLSSQIKgCLVTASADKYVKIWD 352
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 191-223 7.42e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 39.99  E-value: 7.42e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 964750848   191 EGHTDAVLDLSWNKLiRNVLASASADNTVILWD 223
Cdd:smart00320   9 KGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
PTZ00421 PTZ00421
coronin; Provisional
 192-392 9.87e-05

coronin; Provisional


Pssm-ID: 173611 [Multi-domain]  Cd Length: 493  Bit Score: 44.50  E-value: 9.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 192 GHTDAVLDLSWNKLIRNVLASASADNTVILWDM-------SLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVAL 264
Cdd:PTZ00421  73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIpeegltqNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 265 YDCRSPDESHRMWRFSGQIERVTWNhFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASA 344
Cdd:PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 964750848 345 DK----YVKIWDILgDRPSLVHSRDMKmgvlfcSSCCPDLPF------IYAFGGQKEG 392
Cdd:PTZ00421 232 SKsqqrQIMLWDTR-KMASPYSTVDLD------QSSALFIPFfdedtnLLYIGSKGEG 282
WD40 pfam00400
WD domain, G-beta repeat;
314-352 5.60e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 37.32  E-value: 5.60e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 964750848  314 KPIFTLNAHNDEISGLDLSSQiKGCLVTASADKYVKIWD 352
Cdd:pfam00400   2 KLLKTLEGHTGSVTSLAFSPD-GKLLASGSDDGTVKVWD 39
WD40 pfam00400
WD domain, G-beta repeat;
191-223 6.88e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 36.94  E-value: 6.88e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 964750848  191 EGHTDAVLDLSWNKLiRNVLASASADNTVILWD 223
Cdd:pfam00400   8 EGHTGSVTSLAFSPD-GKLLASGSDDGTVKVWD 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 227-266 8.51e-04

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.91  E-value: 8.51e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 964750848   227 GKPAASLAVHTDKVQTLQFHPFEaQTLISGSYDKSVALYD 266
Cdd:smart00320   2 GELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
WD40 COG2319
WD40 repeat [General function prediction only];
137-225 1.10e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 41.05  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964750848 137 SPDdstGNYIAVGNMTPVIEVWDLDivdSLEPVFTLgsklskkkkkkgkksssaEGHTDAVLDLSWN---KLirnvLASA 213
Cdd:COG2319  339 SPD---GKTLASGSDDGTVRLWDLA---TGELLRTL------------------TGHTGAVTSVAFSpdgRT----LASG 390

                         90
                 ....*....|..
gi 964750848 214 SADNTVILWDMS 225
Cdd:COG2319  391 SADGTVRLWDLA 402
WD40 pfam00400
WD domain, G-beta repeat;
227-266 5.39e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 34.63  E-value: 5.39e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 964750848  227 GKPAASLAVHTDKVQTLQFHPFEaQTLISGSYDKSVALYD 266
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPDG-KLLASGSDDGTVKVWD 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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