|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1041 |
4.02e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 4.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 575 RLKLEVEEKKQAMLLLQRALA---QQRDLTARRVKETEKALsRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:COG1196 278 ELELELEEAQAEEYELLAELArleQDIARLEERRRELEERL-EELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 652 VAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwisEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKS 731
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL----AAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 732 LHEAELLQSDERASQRclRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQ 811
Cdd:COG1196 433 LEEEEEEEEEALEEAA--EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 812 ERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIE-LVIHRLEADMALAKEESEKAAESRI 890
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEyLKAAKAGRATFLPLDKIRARAALAA 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 891 KRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVneQLSSERSNLAQVIRQEFED 970
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV--TLEGEGGSAGGSLTGGSRR 668
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 984880650 971 RLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
714-1039 |
1.57e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgqqerERARQRQRAELEELRQQLEESS 793
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 794 SALTRALraefekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKEEawLLNREQELREEIrkgrdKEIELVIHRLEA 873
Cdd:COG1196 281 LELEEAQ---------AEEYELLAELARLEQDIARLEERRRELEERLEE--LEEELAELEEEL-----EELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 874 DMALAKEESEKAAESRIKRlrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQL 953
Cdd:COG1196 345 ELEEAEEELEEAEAELAEA-----EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 954 SSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALArkEEAVSSLRTQHEAAVKRADHLE 1033
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL--EAALAELLEELAEAAARLLLLL 497
|
....*.
gi 984880650 1034 ELLEQH 1039
Cdd:COG1196 498 EAEADY 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-1041 |
1.40e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.48 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATiQRHLAFIDQLIEDKKVLSE 646
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD-EAEAAEEKAEAAEKKKEEA 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVtvrglepeiqkliarhKQEV 726
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA----------------KKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 727 RRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAlgqqererarqRQRAELEELRQQLEESSSALTRALRAEFEK 806
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA-----------EEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 807 GREEQERRhqMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEAD--MALAK-EESE 883
Cdd:PTZ00121 1510 KKADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKaEEAK 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 884 KAAESRIKRLRDKYEAELSELEQSERKLQERCSELKgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQV 963
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 964 IRQEFEDRLAASE----EETRQAKAELATLQARQQLELEEVHRRVKTALARKEEavssLRTQHEAAVKRADHLEELLEQH 1039
Cdd:PTZ00121 1667 AKKAEEDKKKAEEakkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE----LKKAEEENKIKAEEAKKEAEED 1742
|
..
gi 984880650 1040 RR 1041
Cdd:PTZ00121 1743 KK 1744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1036 |
2.17e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAweagRTRKEEAWLLNREQELREEIRKGRD 861
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA----QLSKELTELEAEIEELEERLEEAEE 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 862 --KEIELVIHRLEADMALAKEESeKAAESRIKRLRdkyeAELSELEQSERKLQERCSELKGQLGEAEgenLRLQGLVRQK 939
Cdd:TIGR02168 776 elAEAEAEIEELEAQIEQLKEEL-KALREALDELR----AELTLLNEEAANLRERLESLERRIAATE---RRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 940 ERALEDAQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSS 1017
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQ 926
|
250
....*....|....*....
gi 984880650 1018 LRTQHEAAVKRADHLEELL 1036
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
714-1026 |
2.36e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 714 EIQKLIARHKQEVRRLKSLhEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESS 793
Cdd:COG1196 240 ELEELEAELEELEAELEEL-EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 794 SALTRALRAEFEKGREEQERRHqmELNTLKQQLELERQAWEAGRTRKEEAwLLNREQELREEIRKGRDKEIELVIHRLEA 873
Cdd:COG1196 319 EELEEELAELEEELEELEEELE--ELEEELEEAEEELEEAEAELAEAEEA-LLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 874 DMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQL 953
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984880650 954 SSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAV 1026
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1013 |
2.42e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 2.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREhyEATIQRHLAFIDQLIEDKKVLSEKCEAVVAE 654
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE--LLEALRAAAELAAQLEELEEAEEALLERLER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 655 LKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHE 734
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 735 AELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEK-GREE--- 810
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKaGRATflp 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 811 --QERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAES 888
Cdd:COG1196 579 ldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 889 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEF 968
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 984880650 969 EDRLAASEEETRQAKAELATLqarqqLELEEVHRRVKTALARKEE 1013
Cdd:COG1196 739 EELLEEEELLEEEALEELPEP-----PDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
280-1037 |
2.29e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 280 RHQVQRRGAGAARLEhllQAKREEQRQRSGEGTLLDLHQQKEAARRKAREEKARQARRAAiqelQQKRALRAQKASTAER 359
Cdd:PTZ00121 1165 KAEEARKAEDAKKAE---AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKK 1237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 360 GPPENPRETRVpgmRQPAQELSPTPGGTAHQALKANNTGGGLPAAGPGDRCLPTSDSSPEPQQPPEDRTQDVLaqdaagd 439
Cdd:PTZ00121 1238 DAEEAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA------- 1307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 440 nlemmapsRGSAKSRGPLEELLHTLQLLEKEPDVLPRPrthhrgryawASEVTTEDDASSLTADNLEKfgKLSAFPEPPE 519
Cdd:PTZ00121 1308 --------KKKAEEAKKADEAKKKAEEAKKKADAAKKK----------AEEAKKAAEAAKAEAEAAAD--EAEAAEEKAE 1367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 520 DGTL-LSEAKLQSIMSFLDEMEKSGQDQLDSQQEGWVPEAGPgpLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQR 598
Cdd:PTZ00121 1368 AAEKkKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 599 DLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIK 678
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE---AKKKADEAKKAEEAK 1522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 679 KLKELMSATEKARREKW-ISEKTKKIKEV----TVRGLEpEIQKLIARHKQEVRRLKSLHEAELLQSDERAsqRCLRQAE 753
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAkKAEEKKKADELkkaeELKKAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEA--RIEEVMK 1599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 754 ELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSAL---------------TRALRAEFEKGREEQERRHQME 818
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekkkaeelkkaeeENKIKAAEEAKKAEEDKKKAEE 1679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 819 LntlKQQLELERQAWEAGRTRKEEAwllNREQELR----EEIRKGRD--KEIELVIHRLEADMALAKEESEKAAESRIKr 892
Cdd:PTZ00121 1680 A---KKAEEDEKKAAEALKKEAEEA---KKAEELKkkeaEEKKKAEElkKAEEENKIKAEEAKKEAEEDKKKAEEAKKD- 1752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 893 lrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLrlqglvrqKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRL 972
Cdd:PTZ00121 1753 -----EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL--------DEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNL 1819
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984880650 973 A--ASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLE 1037
Cdd:PTZ00121 1820 VinDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEE 1886
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1040 |
4.19e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTRaLRAEFEKGREEQERRhQMELNTLKQQL-ELERQAweaGRTRKEEAWLLNREQELREEIRKGR 860
Cdd:TIGR02168 255 LEELTAELQELEEKLEE-LRLEVSELEEEIEEL-QKELYALANEIsRLEQQK---QILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 861 DKEIEL--VIHRLEADMALAKEESEkAAESRIKRLRDKYEaelsELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ 938
Cdd:TIGR02168 330 SKLDELaeELAELEEKLEELKEELE-SLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 939 KERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRvktaLARKEEAVSSL 1018
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE----LEEAEQALDAA 480
|
250 260
....*....|....*....|..
gi 984880650 1019 RTQHEAAVKRADHLEELLEQHR 1040
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
650-1000 |
1.15e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 650 AVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIK----EVTVRGLEPEIQKLIARHKQE 725
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLkekrEYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 726 VRRLKSLhEAELLQSDERASQRCLRQAEELREQLEREKE--ALGQQERErarqrqraeleELRQQLEESSSALTRALRAE 803
Cdd:TIGR02169 243 ERQLASL-EEELEKLTEEISELEKRLEEIEQLLEELNKKikDLGEEEQL-----------RVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 804 FEKGREEQ---ERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKeielvIHRLEADMALAKE 880
Cdd:TIGR02169 311 AEKERELEdaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE-----LEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 881 ESeKAAESRIkrlrDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNL 960
Cdd:TIGR02169 386 EL-KDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 984880650 961 AQV---IRQEFEDR---LAASEEETRQAKAELATLQARQQLELEEV 1000
Cdd:TIGR02169 461 AADlskYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
676-992 |
1.71e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 676 EIKKLKELMSATEKARREKwisEKTKKIKEVTVRGLEPEIQKLIARhKQEVRRLKSLHEAELLQSDERASQRCLRQAEEL 755
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAEL---EKALAELRKELEELEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 756 REQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEA 835
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 836 GRTRKEEAWLLNREQELREeirkgrdkEIELVIHRLEaDMALAKEESEKAAESrikrlrdkYEAELSELEQSERKLQERC 915
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSE--------DIESLAAEIE-ELEELIEELESELEA--------LLNERASLEEALALLRSEL 896
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984880650 916 SELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQAR 992
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
665-1041 |
1.77e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 665 RVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERA 744
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 745 SQRCLRQAEELREQLEREKEALGQQERERARQ---RQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQmELNT 821
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEeleEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE-LLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 822 LKQQLELERQAWEAGRTRKEeawLLNREQELREEIRKGRDKEIELvihRLEADMALAKEESEKAAESRIKRLRDKYEAEL 901
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEA---LLERLERLEEELEELEEALAEL---EEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 902 SELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVneqlsSERSNLAQVIRQEFEDRLAASEEETRQ 981
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA-----LLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 982 AKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
844-1038 |
1.78e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 844 WLLNREQELREEIRKGRDKEIElvihRLEADMALAkEESEKAAESRIKRLRDKYEAELSELEQSERKLQE---RCSELKG 920
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREIE----ELEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEElsrQISALRK 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 921 QLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQaRQQLELEEV 1000
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKALR-EALDELRAE 811
|
170 180 190
....*....|....*....|....*....|....*...
gi 984880650 1001 HRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1038
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
610-1041 |
1.89e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 1.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 610 KALSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAqhelEIKKLKELMSATEK 689
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRT-ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 690 ARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK---QEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAL 766
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 767 --GQQERERARQRQRAELEELRQQLEESSSALtralrAEFEKGREEQERRHQMELNtlKQQLELERQAWEAGRTRKEEAW 844
Cdd:PRK03918 323 inGIEERIKELEEKEERLEELKKKLKELEKRL-----EELEERHELYEEAKAKKEE--LERLKKRLTGLTPEKLEKELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 845 LLNREQELREEIRKGRDKEIELviHRLEADMALAKEESEKA-----------AESRIKRLRDKYEAELSELEQSERKLQE 913
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKKAkgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 914 RCSELKGQLGEAEGENLRLQGLVRQKERAledaqavnEQLSSERSNLAQVIRQEFEdrlaASEEETRQAKAELATLQARQ 993
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKELA--------EQLKELEEKLKKYNLEELE----KKAEEYEKLKEKLIKLKGEI 541
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 984880650 994 qleleevhRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:PRK03918 542 --------KSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-1041 |
3.78e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 3.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 537 DEMEKSGQDQLDSQQEGWVPEAGPGPLELGSEVSTSvmrlklevEEKKQAMLLLQRALAQQRDLTARRVKETEKAL-SRQ 615
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKA--------EEAKKKAEDARKAEEARKAEDARKAEEARKAEdAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 616 LQRQREHYEAtiqrHLAFIDQLIEDKKVLSEKCEAVVAElKQEDQRCTERVAQAQAQHELE-IKKLKELMSATEKARREK 694
Cdd:PTZ00121 1154 VEIARKAEDA----RKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEAARKAEeERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 695 WISEKTKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREK-EALGQQERER 773
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaEEKKKADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 774 ARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQMElnTLKQQLELERQAWEAGRTRKEEAwlLNREQELR 853
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE--AAADEAEAAEEKAEAAEKKKEEA--KKKADAAK 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 854 ---EEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKlqeRCSELKGQLGEA-EGEN 929
Cdd:PTZ00121 1385 kkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK---KADEAKKKAEEAkKAEE 1461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 930 LRLQGlvRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALA 1009
Cdd:PTZ00121 1462 AKKKA--EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
490 500 510
....*....|....*....|....*....|..
gi 984880650 1010 RKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
837-1041 |
6.26e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 837 RTRKEEAWL--------LNREQELREEIRKGRDKeIELVIHRLEADMALAKEESEKAAESRIKRLRDkYEAELSELEQSE 908
Cdd:TIGR02168 171 KERRKETERklertrenLDRLEDILNELERQLKS-LERQAEKAERYKELKAELRELELALLVLRLEE-LREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 909 RKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELAT 988
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK-QILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 984880650 989 LQARQQLELEEVHRR------VKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:TIGR02168 328 LESKLDELAEELAELeekleeLKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
568-966 |
1.96e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 568 EVSTSVMRLKLEVEEKKQAMLLLQRALAQQ---RDLTARRVKETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVL 644
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAeryQALLKEKREYEGYELLKEKEALERQKEA-IERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 645 SEKCEAVVAELKQEDQRCTERVAQAQAQHELEIK-KLKELMSATEKARREkwISEKTKKIKEvtvrgLEPEIQKLIArhk 723
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELEAEIASLERS--IAEKERELED-----AEERLAKLEA--- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 724 qEVRRLKSLHEaellQSDERASQRCLRQAEELREQLEREKEalgqqererarqrqraeLEELRQQLEESSSALtRALRAE 803
Cdd:TIGR02169 330 -EIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEE-----------------LEDLRAELEEVDKEF-AETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 804 FEKGREEQERrHQMELNTLKQqlELERQAWEAGRTRKEEAwllnreqELREEIRKGRDKEIELVIHRLEADMALAKEESE 883
Cdd:TIGR02169 387 LKDYREKLEK-LKREINELKR--ELDRLQEELQRLSEELA-------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 884 KaaeSRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGEnlrlqglVRQKERALEDAQAVNEQLSSERSNLAQV 963
Cdd:TIGR02169 457 L---EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-------ARASEERVRGGRAVEEVLKASIQGVHGT 526
|
...
gi 984880650 964 IRQ 966
Cdd:TIGR02169 527 VAQ 529
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
579-1027 |
6.37e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.16 E-value: 6.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 579 EVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQ---LQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAEL 655
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAdaaVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 656 KQEDQRC---TERVAQAQAQHELEIKKLKElmsatEKARREKWISEKTKKIKEVTVRGLEPE---IQKL----------- 718
Cdd:pfam12128 357 ENLEERLkalTGKHQDVTAKYNRRRSKIKE-----QNNRDIAGIKDKLAKIREARDRQLAVAeddLQALeselreqleag 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 719 IARHKQEVRRLKS-LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRaeLEELRQQLEESSSALT 797
Cdd:pfam12128 432 KLEFNEEEYRLKSrLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSE--LRQARKRRDQASEALR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 798 RALRAEFEKGREEQERRHQM--ELNTLKQQLELERQAWEAGRTRKEEAWLLNReQELREEIRKGRDKEiELVIHRLEADM 875
Cdd:pfam12128 510 QASRRLEERQSALDELELQLfpQAGTLLHFLRKEAPDWEQSIGKVISPELLHR-TDLDPEVWDGSVGG-ELNLYGVKLDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 876 ALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRlqglvrqKERALEDAQAVNEQLSS 955
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETF-------ARTALKNARLDLRRLFD 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 956 ERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTA------------------LARKEEAVSS 1017
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREArtekqaywqvvegaldaqLALLKAAIAA 740
|
490
....*....|
gi 984880650 1018 LRTQHEAAVK 1027
Cdd:pfam12128 741 RRSGAKAELK 750
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
592-1041 |
9.95e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 9.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 592 RALAQQRDLTARRVKETEKALSrQLQRQREHYEATIQRH-----LAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCtERV 666
Cdd:COG4717 91 AELQEELEELEEELEELEAELE-ELREELEKLEKLLQLLplyqeLEALEAELAELPERLEELEERLEELRELEEEL-EEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 667 AQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTvrglepEIQKLIARHKQEVRRLKSLHEAELLQSDERASQ 746
Cdd:COG4717 169 EAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA------ELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 747 RCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREE-QERRHQMELNTLKQQ 825
Cdd:COG4717 243 ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEElQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 826 LELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLE----ADMALAKEESEKAAESRIKRLRDKyeael 901
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEqeiaALLAEAGVEDEEELRAALEQAEEY----- 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 902 seleqseRKLQERCSELKGQLGEAEGENLRLQglvrqkerALEDAQAVNEQLssersnlaqvirQEFEDRLAASEEETRQ 981
Cdd:COG4717 398 -------QELKEELEELEEQLEELLGELEELL--------EALDEEELEEEL------------EELEEELEELEEELEE 450
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 984880650 982 AKAELATLQAR-QQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:COG4717 451 LREELAELEAElEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
820-1022 |
1.00e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 820 NTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDK--EIELVIHRLEADMALAKEESEKAAESRIKRLRDKY 897
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 898 EAELSELEQSERKLQERCSELKGQLGEAEGENL-RLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI---RQEFEDRLA 973
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLeQLEREIERLERELEERERRRARLEALLAALGLPLpasAEEFAALRA 387
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 984880650 974 ASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQH 1022
Cdd:COG4913 388 EAAALLEALEEELEALEEALA-EAEAALRDLRRELRELEAEIASLERRK 435
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
831-1041 |
7.84e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 7.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 831 QAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELV--IHRLEADMALAKEEsEKAAESRIKRLrdkyEAELSELEQSE 908
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLkqLAALERRIAALARR-IRALEQELAAL----EAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 909 RKLQERCSELKGQLGE------AEGENLRLQGLVRQKE-RALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQ 981
Cdd:COG4942 93 AELRAELEAQKEELAEllralyRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLA-ELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 984880650 982 AKAELATL---QARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:COG4942 172 ERAELEALlaeLEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
782-988 |
1.45e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSAL--TRALRAEFEKGREEQERR---HQMELNTLKQQLELERQawEAGRTRKEEAWLLNREQELREEI 856
Cdd:COG4942 29 LEQLQQEIAELEKELaaLKKEEKALLKQLAALERRiaaLARRIRALEQELAALEA--ELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 857 --------RKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGE 928
Cdd:COG4942 107 aellralyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 929 NLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvIRQEFEDRLAASEEETRQAKAELAT 988
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQ-EAEELEALIARLEAEAAAAAERTPA 245
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
574-1028 |
2.12e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.10 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 574 MRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFI-------DQLIEDKKVLSE 646
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 647 KCEAVVAELKQEDQRcTERVAQAQAQHELEIKKLKELMSATEKARREkwiSEKTKKIKEvtvrGLEPEIQKLIARHKQEV 726
Cdd:pfam01576 160 RISEFTSNLAEEEEK-AKSLSKLKNKHEAMISDLEERLKKEEKGRQE---LEKAKRKLE----GESTDLQEQIAELQAQI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 727 RRLK---SLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAE 803
Cdd:pfam01576 232 AELRaqlAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDT 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 804 FEKGREEQERRHQ--MELNTLKQQLELERQAWEA--GRTRKEEAWLLNREQELREEIRKGRdKEIELVIHRLEAD----- 874
Cdd:pfam01576 312 LDTTAAQQELRSKreQEVTELKKALEEETRSHEAqlQEMRQKHTQALEELTEQLEQAKRNK-ANLEKAKQALESEnaelq 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 875 -----MALAKEESE---KAAESRIKRLRDKY-EAELSELEQSER--KLQERCSELKGQLGEAEGENLRLQGLVRQKERAL 943
Cdd:pfam01576 391 aelrtLQQAKQDSEhkrKKLEGQLQELQARLsESERQRAELAEKlsKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 944 EDAQAVNEQLSSERSNLAQVIRQEFEDR------LAASEEETRQAKAELATLQArQQLELEEVHRRVKTALARKEEAVSS 1017
Cdd:pfam01576 471 QDTQELLQEETRQKLNLSTRLRQLEDERnslqeqLEEEEEAKRNVERQLSTLQA-QLSDMKKKLEEDAGTLEALEEGKKR 549
|
490
....*....|.
gi 984880650 1018 LRTQHEAAVKR 1028
Cdd:pfam01576 550 LQRELEALTQQ 560
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-978 |
2.65e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 712 EPEIQKLIARHKQEVRRLKSLHEAELlqsDERASQRCLRQAEELREQLEREKEALGQQERERARQR---QRAELEELRQQ 788
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALE---DAREQIELLEPIRELAERYAAARERLAELEYLRAALRlwfAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 789 LEESSSALTRAlraefekgrEEQERRHQMELNTLKQQL-ELERQAWEAGrtrkeeawlLNREQELREEIRkGRDKEIELV 867
Cdd:COG4913 297 LEELRAELARL---------EAELERLEARLDALREELdELEAQIRGNG---------GDRLEQLEREIE-RLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 868 IHRLEADMALAK--EESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLgeaegenlrlqglvRQKERALED 945
Cdd:COG4913 358 ERRRARLEALLAalGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL--------------RDLRRELRE 423
|
250 260 270
....*....|....*....|....*....|....*.
gi 984880650 946 AQAVNEQLSSERSNL---AQVIRQEFEDRLAASEEE 978
Cdd:COG4913 424 LEAEIASLERRKSNIparLLALRDALAEALGLDEAE 459
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
593-1038 |
2.77e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 593 ALAQQRDLTARRVKETEKALSRQLQRQREHyEATIQRHLAFIDQLIEDKKVLSEKceavVAELKQEDQRCTERVAQAQAQ 672
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAH-NEEAESLREDADDLEERAEELREE----AAELESELEEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 673 HELEIKKLKELMSATEKArrekwisektkkikEVTVRGLEPEIQKLIARHKQEVRRLKSLhEAELLQSDER-ASQRCLRQ 751
Cdd:PRK02224 386 IEELEEEIEELRERFGDA--------------PVDLGNAEDFLEELREERDELREREAEL-EATLRTARERvEEAEALLE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 752 AEELREQLEREKE---ALGQQERERARQRQRAELEELRQQLEESSSALTRALRA-EFEKGREEQERRHQmelnTLKQQLE 827
Cdd:PRK02224 451 AGKCPECGQPVEGsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLvEAEDRIERLEERRE----DLEELIA 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 828 LERQAWEAGRTRKEEawLLNREQELREEIRKGRDKEIELVIHRLEADMALAKEESEKAA-ESRIKRLrDKYEAELSELEQ 906
Cdd:PRK02224 527 ERRETIEEKRERAEE--LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL-ERIRTLLAAIAD 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 907 SERKLQERCSELKGQlgeAEGENLRLQGLVRQKERALEDAQAVNEqlssERSNLAQVIRQEFEDRLAASEEETRQAKAEL 986
Cdd:PRK02224 604 AEDEIERLREKREAL---AELNDERRERLAEKRERKRELEAEFDE----ARIEEAREDKERAEEYLEQVEEKLDELREER 676
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 984880650 987 ATLQARQQLeleevhrrVKTALARKEEavssLRTQHEAAVKRADHLEELLEQ 1038
Cdd:PRK02224 677 DDLQAEIGA--------VENELEELEE----LRERREALENRVEALEALYDE 716
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
782-1038 |
4.06e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 4.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSAL-TRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAgrtrkEEAWLLNREQELREEIRKgr 860
Cdd:TIGR02169 704 LDELSQELSDASRKIgEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-----ELKELEARIEELEEDLHK-- 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 861 dkeIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKE 940
Cdd:TIGR02169 777 ---LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 941 RALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQARQQleleevhrRVKTALARKEEAVSSLRT 1020
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALR-DLESRLGDLKKERDELEAQLRELERKIE--------ELEAQIEKKRKRLSELKA 924
|
250
....*....|....*...
gi 984880650 1021 QHEAAVKRADHLEELLEQ 1038
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGE 942
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
563-914 |
5.07e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 5.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 563 LELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYEATIQRHLAFIDQLIEDKK 642
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 643 VLSEKCEAVVAELKQEDQRCTERVAQAQA-QHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIAR 721
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEeEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 722 HKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESS-----SAL 796
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLlkeeeLEE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 797 TRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEAD-- 874
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEer 961
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 984880650 875 ---MALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQER 914
Cdd:pfam02463 962 nkrLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
784-1018 |
6.60e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.12 E-value: 6.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 784 ELRQQLEESSSALTRALR------AEFEKGREEQERR-HQMELNTLKQQLELERQ---AWEAGRTRKEEAWLLNREQE-- 851
Cdd:pfam17380 313 ERRRKLEEAEKARQAEMDrqaaiyAEQERMAMERERElERIRQEERKRELERIRQeeiAMEISRMRELERLQMERQQKne 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 852 -------------LREEIRKGRDKEielvihrLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSEL 918
Cdd:pfam17380 393 rvrqeleaarkvkILEEERQRKIQQ-------QKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 919 KGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSER-------SNLAQVIRQEFEDRLAASEEETRQAKAElatLQA 991
Cdd:pfam17380 466 RQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERkqamieeERKRKLLEKEMEERQKAIYEEERRREAE---EER 542
|
250 260
....*....|....*....|....*..
gi 984880650 992 RQQLELEEvHRRVKTALARKEEAVSSL 1018
Cdd:pfam17380 543 RKQQEMEE-RRRIQEQMRKATEERSRL 568
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
575-1041 |
7.42e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 7.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 575 RLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSR--QLQRQREHYEATIQRHLAFIDQLIEDKKVLS------- 645
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSEFYEEYLDELREIEKRLSrleeein 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 646 ---------EKCEAVVAELKQEDQRCTERVAQAQAQHEL--EIKKLKELMSATEKARREKWISEKTKKIKEVTVRG--LE 712
Cdd:PRK03918 325 gieerikelEEKEERLEELKKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKeeIE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 713 PEIQKLIARHKQEVRRLKSLHEA-ELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE 791
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAiEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 792 SSSALTRALRAEFEKGREEQERRHQMELNTLKQQlELERQAWEAGRTRKEEAWLLNREQELREEIRKGRD--KEIELVIH 869
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNLE-ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkKKLAELEK 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 870 RLEAdmalaKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAV 949
Cdd:PRK03918 564 KLDE-----LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAET 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 950 NEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARqqleLEEVHRRVKTA------LARKEEAVSSLRTQHE 1023
Cdd:PRK03918 639 EKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE----LEELEKRREEIkktlekLKEELEEREKAKKELE 714
|
490
....*....|....*...
gi 984880650 1024 AAVKRADHLEELLEQHRR 1041
Cdd:PRK03918 715 KLEKALERVEELREKVKK 732
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
782-1039 |
9.24e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.96 E-value: 9.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSAltRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRK----------EEAWLLNREQE 851
Cdd:PRK04863 357 LEELEERLEEQNEV--VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAiqyqqavqalERAKQLCGLPD 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 852 LREE-----IRKGRDKEIELVIHRLEADMAL-----AKEESEKAAESrIKRLRDKYEAE---------LSELEqSERKLQ 912
Cdd:PRK04863 435 LTADnaedwLEEFQAKEQEATEELLSLEQKLsvaqaAHSQFEQAYQL-VRKIAGEVSRSeawdvarelLRRLR-EQRHLA 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 913 ERCSELKGQLGEAEGEnLRLQglvRQKERALEDA-QAVNEQLSSErsnlaqvirQEFEDRLAASEEETRQAKAELATLQA 991
Cdd:PRK04863 513 EQLQQLRMRLSELEQR-LRQQ---QRAERLLAEFcKRLGKNLDDE---------DELEQLQEELEARLESLSESVSEARE 579
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 984880650 992 RQ---QLELEEVHRRVKTALARK------EEAVSSLRTQHEAAVKRADHLEELLEQH 1039
Cdd:PRK04863 580 RRmalRQQLEQLQARIQRLAARApawlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
782-1041 |
9.45e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 9.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTRALRAeFEKGREEQER---RHQMELNTLKQQLELERQAWEAGRTR--KEEAWLLNREQELREEI 856
Cdd:pfam12128 627 LVQANGELEKASREETFARTA-LKNARLDLRRlfdEKQSEKDKKNKALAERKDSANERLNSleAQLKQLDKKHQAWLEEQ 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 857 rkgRDKEIELVIHRLEADMALakEESEKAAESRIK----RLRDKYEAELSELEqserklQERCSELKGqLGEAEGENLRL 932
Cdd:pfam12128 706 ---KEQKREARTEKQAYWQVV--EGALDAQLALLKaaiaARRSGAKAELKALE------TWYKRDLAS-LGVDPDVIAKL 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 933 QGLVRQKERALEDA-----------QAVNEQLSSERSNLAQVIRQ------EFEDRLAASEEETRQAKAELAT---LQAR 992
Cdd:pfam12128 774 KREIRTLERKIERIavrrqevlryfDWYQETWLQRRPRLATQLSNieraisELQQQLARLIADTKLRRAKLEMerkASEK 853
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 984880650 993 QQLELEEVHRRVK---TALARKEEAVSSLRTQHEAAvKRADHLEELLEQHRR 1041
Cdd:pfam12128 854 QQVRLSENLRGLRcemSKLATLKEDANSEQAQGSIG-ERLAQLEDLKLKRDY 904
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
567-971 |
1.21e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 567 SEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLtarrvkETEKALSRQLQRQREHYEAtIQRHLAFIDQLIEDKKVLSE 646
Cdd:COG4717 98 EELEEELEELEAELEELREELEKLEKLLQLLPLY------QELEALEAELAELPERLEE-LEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 647 KCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSA--TEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHKQ 724
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEleEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 725 EVRRLKSLHEAELLQSDERASQR-------------CLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEE 791
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILtiagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 792 SSSALTRALRAEFEKGREEQERRHQMElnTLKQQLELERQaweagrtRKEEAWLLNR-----EQELREEIRKGRD----- 861
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAE--ELEEELQLEEL-------EQEIAALLAEagvedEEELRAALEQAEEyqelk 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 862 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENlRLQGLVRQKER 941
Cdd:COG4717 402 EELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEE 480
|
410 420 430
....*....|....*....|....*....|..
gi 984880650 942 ALEDAQAVNEQLSSER--SNLAQVIRQEFEDR 971
Cdd:COG4717 481 LKAELRELAEEWAALKlaLELLEEAREEYREE 512
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
578-1041 |
1.55e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 578 LEVEEKKQAMLLLQRALAQQRdltaRRVKETEKALSRQLQRQREHYEAT-------IQRHLAFIDQLieDKKVLSEkcEA 650
Cdd:pfam15921 113 IDLQTKLQEMQMERDAMADIR----RRESQSQEDLRNQLQNTVHELEAAkclkedmLEDSNTQIEQL--RKMMLSH--EG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 651 VVAELKQEDQRCTERVAQAQAQHE-LEIKKLKELMSATEKARRE--KWISEKTKKIKEV--TVRGLEPE----IQKLIAR 721
Cdd:pfam15921 185 VLQEIRSILVDFEEASGKKIYEHDsMSTMHFRSLGSAISKILREldTEISYLKGRIFPVedQLEALKSEsqnkIELLLQQ 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 722 HKQEVRRLKSLHEAELLQSDERASQrCLRQAEELREQLEREKEalgqqereRARQRQRAELEELrQQLEESSSALTRALR 801
Cdd:pfam15921 265 HQDRIEQLISEHEVEITGLTEKASS-ARSQANSIQSQLEIIQE--------QARNQNSMYMRQL-SDLESTVSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 802 aefekgreEQERRHQMELNTLKQQLELERQAWEAGRTRKEEawLLNREQELREEIRKgrdkeIELVIHRLEADMALAKEE 881
Cdd:pfam15921 335 --------EAKRMYEDKIEELEKQLVLANSELTEARTERDQ--FSQESGNLDDQLQK-----LLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 882 SekaaesriKRLRDKYEAELSELEQSERKLQERCSE-------LKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLS 954
Cdd:pfam15921 400 N--------KRLWDRDTGNSITIDHLRRELDDRNMEvqrlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 955 SERSNLAQVIRQ--------EFEDR----LAASEEETRQA----KAELATLQARQQLELEEV--------HRR------- 1003
Cdd:pfam15921 472 STKEMLRKVVEEltakkmtlESSERtvsdLTASLQEKERAieatNAEITKLRSRVDLKLQELqhlknegdHLRnvqtece 551
|
490 500 510
....*....|....*....|....*....|....*....
gi 984880650 1004 -VKTALARKEEAVSSLRTQHEaavkradHLEELLEQHRR 1041
Cdd:pfam15921 552 aLKLQMAEKDKVIEILRQQIE-------NMTQLVGQHGR 583
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1041 |
4.28e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 581 EEKKQAMLLLQRALAQQRDLTArrVKETEKALSRQLQRQREHYEATIQRHLAFIDqliedkkvlsEKCEAVVAELKQEDQ 660
Cdd:TIGR00618 369 EISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQREQATIDTRTSAFRD----------LQGQLAHAKKQQELQ 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 661 RCTERVAQAQAQHELEIKKLKELMsATEKARREKWISEKTKKIKEVTVRglEPEIQKLIARHKQEVRRLKSLHEAELLQS 740
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIH-LQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGSCIHP 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 741 DERASQ---------RCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQ 811
Cdd:TIGR00618 514 NPARQDidnpgpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 812 ER-----------------RHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEAD 874
Cdd:TIGR00618 594 VRlqdlteklseaedmlacEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 875 MALAKEESEKAAESRIKRLRDKYE----------AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ------ 938
Cdd:TIGR00618 674 LLASRQLALQKMQSEKEQLTYWKEmlaqcqtllrELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKElmhqar 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 939 ---KERALEDAQA-----VNEQLSSERSNLAQVI------RQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRV 1004
Cdd:TIGR00618 754 tvlKARTEAHFNNneevtAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQF 833
|
490 500 510
....*....|....*....|....*....|....*..
gi 984880650 1005 KTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:TIGR00618 834 LSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
649-991 |
5.02e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 649 EAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREkwISEKTKKIKEVTVRG--LEPEIQKLIARHKQEV 726
Cdd:TIGR02169 666 ILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE--LSDASRKIGEIEKEIeqLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 727 RRLKSLHEAelLQSDERASQRCLRQAEELREQLEREKEALGQQERERAR------QRQRAELEELRQQLEESSSALTRAL 800
Cdd:TIGR02169 744 EDLSSLEQE--IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeiQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 801 -RAEFEKGREEQERRH-QMELNTLKQQLELERQAWEAGRTRKEEawllnreqeLREEIrkgrdKEIELVIHRLEADMALA 878
Cdd:TIGR02169 822 nRLTLEKEYLEKEIQElQEQRIDLKEQIKSIEKEIENLNGKKEE---------LEEEL-----EELEAALRDLESRLGDL 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 879 KEESEKAaESRIKRLRDKYEaelsELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQ------KERALEDAQAVNEQ 952
Cdd:TIGR02169 888 KKERDEL-EAQLRELERKIE----ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeeipeEELSLEDVQAELQR 962
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 984880650 953 LSSERSNLAQV---IRQEFEDRLAASEEetrqAKAELATLQA 991
Cdd:TIGR02169 963 VEEEIRALEPVnmlAIQEYEEVLKRLDE----LKEKRAKLEE 1000
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
845-1041 |
5.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 845 LLNREQELREEIRKGRDKEIELVIHRLeadmalakeeseKAAESRIKRLRDKyEAELSELEQSERKLQERCSELKGQLGE 924
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKEL------------KELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 925 AEGENLRLQGLVRQKErALEDAQAVNEQLSSERSNLAQVIRQEfeDRLAASEEETRQAKAELATLQARQQLELEEVHRRV 1004
Cdd:COG4717 114 LREELEKLEKLLQLLP-LYQELEALEAELAELPERLEELEERL--EELRELEEELEELEAELAELQEELEELLEQLSLAT 190
|
170 180 190
....*....|....*....|....*....|....*..
gi 984880650 1005 KTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:COG4717 191 EEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
630-1034 |
7.67e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 630 HLAFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEK-----ARREKWISEKTKKIK 704
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEleeleAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 705 EVTVRGLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEE 784
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 785 LRQQLEESSSALTRAlRAEFEKGREEQER-RHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKE 863
Cdd:COG4717 204 LQQRLAELEEELEEA-QEELEELEEELEQlENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 864 IELVI------------HRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLR 931
Cdd:COG4717 283 LGLLAllflllarekasLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 932 LQGLVRQKERA--LEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALA 1009
Cdd:COG4717 363 LQLEELEQEIAalLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELE 442
|
410 420
....*....|....*....|....*
gi 984880650 1010 RKEEAVSSLRTQHEAAVKRADHLEE 1034
Cdd:COG4717 443 ELEEELEELREELAELEAELEQLEE 467
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
819-1041 |
7.86e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 7.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 819 LNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRkgrDKEIELVIHRLEADMALAKEESeKAAESRIKRLrdkyE 898
Cdd:COG3206 154 ANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELE---EAEAALEEFRQKNGLVDLSEEA-KLLLQQLSEL----E 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 899 AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGlvrqkeraledaqavNEQLSSERSNLAQVIRQ--EFEDRLAASE 976
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ---------------SPVIQQLRAQLAELEAElaELSARYTPNH 290
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984880650 977 EETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:COG3206 291 PDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR 355
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
567-1040 |
1.46e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 567 SEVSTSVMRLKLEVEEKKQAMLLLQ-RALAQQRDLTARRVKETEKAlSRQLQRQREHYEATIQRHlAFIDQLIEDKKVLS 645
Cdd:PRK02224 183 SDQRGSLDQLKAQIEEKEEKDLHERlNGLESELAELDEEIERYEEQ-REQARETRDEADEVLEEH-EERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 646 EKCEAVVAELKQEDQRCTERVAQAQAQHEleikklkELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLiARHKQE 725
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLE-------ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL-RDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 726 VRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEAlgqQERERARQRQRAELEELRQQLEESSSALTRA------ 799
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL---EEAREAVEDRREEIEELEEEIEELRERFGDApvdlgn 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 800 LRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADMALAK 879
Cdd:PRK02224 410 AEDFLEELREERDELRE-REAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 880 EESE------------KAAESRIKRLRDKYEAELSELEQSERKL---QERCSELKGQLGEAEGENLRLQGLVRQKERALE 944
Cdd:PRK02224 489 EEVEeveerleraedlVEAEDRIERLEERREDLEELIAERRETIeekRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 945 DAQAVNEQLSSERSNLAQVIRQ--EFEDRLAASEE---------ETRQAKAELATlQARQQLElEEVHRRVKTALARKEE 1013
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESleRIRTLLAAIADaedeierlrEKREALAELND-ERRERLA-EKRERKRELEAEFDEA 646
|
490 500
....*....|....*....|....*..
gi 984880650 1014 AVSSLRTQHEAAVKRADHLEELLEQHR 1040
Cdd:PRK02224 647 RIEEAREDKERAEEYLEQVEEKLDELR 673
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
809-1022 |
1.51e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 809 EEQERRHQMELnTLKQQLELERQAWEAG-RTRKEEAWLL---NREQ--ELREEIRkgrdkEIELVIHRLEADMALAKEES 882
Cdd:COG4913 567 PEELRRHPRAI-TRAGQVKGNGTRHEKDdRRRIRSRYVLgfdNRAKlaALEAELA-----ELEEELAEAEERLEALEAEL 640
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 883 E----------------------KAAESRIKRLRDKYEA------ELSELEQSERKLQERCSELKGQLGEAEGENLRLQg 934
Cdd:COG4913 641 DalqerrealqrlaeyswdeidvASAEREIAELEAELERldassdDLAALEEQLEELEAELEELEEELDELKGEIGRLE- 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 935 lvRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAAseeetrqakAELATLQARQQLELEEVHRRVKTALARKEEA 1014
Cdd:COG4913 720 --KELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA---------ALGDAVERELRENLEERIDALRARLNRAEEE 788
|
....*...
gi 984880650 1015 VSSLRTQH 1022
Cdd:COG4913 789 LERAMRAF 796
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
725-1035 |
1.62e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 725 EVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEF 804
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 805 EKGREEQERRHQMELNTLKQQLELERQaweagRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEadmalakEESEK 884
Cdd:pfam02463 232 LKLNEERIDLLQELLRDEQEEIESSKQ-----EIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE-------EEELK 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 885 AAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVI 964
Cdd:pfam02463 300 SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984880650 965 RQEFEDRLAASEEETRQA------KAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEEL 1035
Cdd:pfam02463 380 KLESERLSSAAKLKEEELelkseeEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQ 456
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
714-970 |
1.76e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 714 EIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEALgqqererarQRQRAELEELRQQLEESS 793
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERL---------DASSDDLAALEEQLEELE 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 794 SALtRALRAEFEKgREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEA 873
Cdd:COG4913 699 AEL-EELEEELDE-LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERID 776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 874 DMALAKEESEKAAESRIKRLRDKYEAELSELE---QSERKLQERCSELKGQlgeaegenlrlqGLVRQKERALEdaqAVN 950
Cdd:COG4913 777 ALRARLNRAEEELERAMRAFNREWPAETADLDadlESLPEYLALLDRLEED------------GLPEYEERFKE---LLN 841
|
250 260
....*....|....*....|
gi 984880650 951 EQLSSERSNLAQVIRQEFED 970
Cdd:COG4913 842 ENSIEFVADLLSKLRRAIRE 861
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
862-964 |
1.93e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.46 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 862 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKY---EAELSELE---QSERKLQERCSELKGQLGEAEGENLRLQGL 935
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFERLAELRDELaelEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110
....*....|....*....|....*....|
gi 984880650 936 VRQKERALEDAQA-VNEQLSSErsNLAQVI 964
Cdd:COG0542 494 LAELEEELAELAPlLREEVTEE--DIAEVV 521
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
632-1034 |
2.52e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 632 AFIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQAQHELEIKKLKELMSATEKARREK------------WISEK 699
Cdd:TIGR00606 663 AVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRdemlglapgrqsIIDLK 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 700 TKKIKEV--TVRGLEPEIQKLIARHKQEVRRLKS----LHEAELLQSDERASQRCLRQAEELREQLEREKEALGQQERER 773
Cdd:TIGR00606 743 EKEIPELrnKLQKVNRDIQRLKNDIEEQETLLGTimpeEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 774 ARQRQRAELEELRQQLEESSSALTraLRAEFEKGREEQERRHQMELNTLK-QQLELERQAWEAGRTRKEEAWLLNREQEL 852
Cdd:TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIE--LNRKLIQDQQEQIQHLKSKTNELKsEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 853 REEIRKGRDKEIELV-----IHRLEADMALAKEESEKAAESRIKRLRDKYEAELSELEQSERKLQERCSE-LKGQLGEAE 926
Cdd:TIGR00606 901 IREIKDAKEQDSPLEtflekDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDyLKQKETELN 980
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 927 GENLRLQGLVRQKERALED----AQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQleleevhr 1002
Cdd:TIGR00606 981 TVNAQLEECEKHQEKINEDmrlmRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQM-------- 1052
|
410 420 430
....*....|....*....|....*....|..
gi 984880650 1003 rvKTALARKEEAVSSLRTQHEAAVKRADHLEE 1034
Cdd:TIGR00606 1053 --KQEHQKLEENIDLIKRNHVLALGRQKGYEK 1082
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
782-1023 |
2.80e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRhqMELNTLKQQLELERQAWEAGRTRKEEawllnREQELREEIRKGRD 861
Cdd:pfam01576 31 LEKKHQQLCEEKNALQEQLQAETELCAEAEEMR--ARLAARKQELEEILHELESRLEEEEE-----RSQQLQNEKKKMQQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 862 KEIELVIHRLEADMALAKEESEK-AAESRIKRLRDK---YEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVR 937
Cdd:pfam01576 104 HIQDLEEQLDEEEAARQKLQLEKvTTEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKN 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 938 QKERALEDAQavneqlssERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARqqleLEEvhrrVKTALARKEEAVSS 1017
Cdd:pfam01576 184 KHEAMISDLE--------ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ----IAE----LRAQLAKKEEELQA 247
|
....*.
gi 984880650 1018 LRTQHE 1023
Cdd:pfam01576 248 ALARLE 253
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
782-1040 |
3.21e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTRALRAEFEKGREEQERRHQMEL----NTLKQQLELERQAWEAGRTR--KEEAWLLNREQELREE 855
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAELLQNRLEECLQERAELlqaqEAANRQREKEKERYKRDREQweRQRRELESRVAELKEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 856 IRKGRDKEIELVIHRLEADMALAKEESEKAAESRIkrlRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGL 935
Cdd:pfam07888 89 LRQSREKHEELEEKYKELSASSEELSEEKDALLAQ---RAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 936 VRQKERALEDAQAVNEQLSSERSNLAQVIrQEFEDRLAASEEETRQAKAELATLQA------RQQLELEEVHRRVKTA-- 1007
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEF-QELRNSLAQRDTQVLQLQDTITTLTQklttahRKEAENEALLEELRSLqe 244
|
250 260 270
....*....|....*....|....*....|....
gi 984880650 1008 -LARKEEAVSSLRTQHEAAVKRADHLEELLEQHR 1040
Cdd:pfam07888 245 rLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
603-1035 |
3.63e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 603 RRVKETEKALSRQLQRQREHYEATIQRHlafIDQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAQAQaQHELEIKKLKE 682
Cdd:TIGR00606 400 IERQEDEAKTAAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-QLEGSSDRILE 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 683 LMSATEKARREKWISEK-----TKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSlHEAELLQSDERASQRCLRQAEELRE 757
Cdd:TIGR00606 476 LDQELRKAERELSKAEKnslteTLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH-HTTTRTQMEMLTKDKMDKDEQIRKI 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 758 QLEREKEALGQQERERARQRQRAELEELRQQLEESSSALtRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGR 837
Cdd:TIGR00606 555 KSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRL-AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG 633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 838 TRKEEAWLLNreqeLREEIRKGR-------------DKEIELVIHRLEADMALAKE--ESEKAAESRIKRLRDKYEAELS 902
Cdd:TIGR00606 634 SQDEESDLER----LKEEIEKSSkqramlagatavySQFITQLTDENQSCCPVCQRvfQTEAELQEFISDLQSKLRLAPD 709
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 903 ELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvirQEFEDRLAASEEETRQA 982
Cdd:TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE---QETLLGTIMPEEESAKV 786
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 984880650 983 KAELATLQARQQLELEEVHRRVKTaLARKEEAVSSLRTQHEAAVKRADHLEEL 1035
Cdd:TIGR00606 787 CLTDVTIMERFQMELKDVERKIAQ-QAAKLQGSDLDRTVQQVNQEKQEKQHEL 838
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
782-1043 |
4.02e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTR---------ALRAEFEKGREEQERRHQmELNTLKQQLELERQAWEAGRTRKEEawllnreqeL 852
Cdd:PRK02224 208 LNGLESELAELDEEIERyeeqreqarETRDEADEVLEEHEERRE-ELETLEAEIEDLRETIAETEREREE---------L 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 853 REEIRKGRDKEIELvihRLEADMALAKEESEKAAESRIkrlrdkyEAELSELEQSERKLQERCSELKGQLGEAEGENLRL 932
Cdd:PRK02224 278 AEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEELRDRLEECRVAAQAHNEEAESL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 933 QGLVRQKERALEDAQAVNEQLSSERSNLAQVIRqEFEDRLAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKE 1012
Cdd:PRK02224 348 REDADDLEERAEELREEAAELESELEEAREAVE-DRREEIEELEEEIEELRERFGDAPVDLG-NAEDFLEELREERDELR 425
|
250 260 270
....*....|....*....|....*....|.
gi 984880650 1013 EAVSSLRTQHEAAVKRADHLEELLEQHRRPT 1043
Cdd:PRK02224 426 EREAELEATLRTARERVEEAEALLEAGKCPE 456
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
578-1006 |
5.14e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 5.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKE----TEKALSRQ------------LQRQREHYEATIQRHLAFID------ 635
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRIEQLISEHEVEitglTEKASSARsqansiqsqleiIQEQARNQNSMYMRQLSDLEstvsql 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 636 --QLIEDKKVLSEKCEAVVAEL----KQEDQRCTERVAQAQAQHELEiKKLKELMSATEKarREKWISEKTKKIKEVTVR 709
Cdd:pfam15921 330 rsELREAKRMYEDKIEELEKQLvlanSELTEARTERDQFSQESGNLD-DQLQKLLADLHK--REKELSLEKEQNKRLWDR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 710 GLEPEI-----QKLIARHKQEVRRLKSLHEAellQSDERASQRCLRQAEELREQLEREKEALGQQERERARQRQRAELEE 784
Cdd:pfam15921 407 DTGNSItidhlRRELDDRNMEVQRLEALLKA---MKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 785 L--RQQLEESSSALTRALRAEFEKgREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELREEIRKGRDK 862
Cdd:pfam15921 484 LtaKKMTLESSERTVSDLTASLQE-KERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 863 EIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE-----AELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVR 937
Cdd:pfam15921 563 VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEindrrLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGS 642
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 984880650 938 QKERALEDAQAVNEQLSSE----RSNLA------QVIRQEFEDRLAASEEETRQAKAELATLQArqqlELEEVHRRVKT 1006
Cdd:pfam15921 643 ERLRAVKDIKQERDQLLNEvktsRNELNslsedyEVLKRNFRNKSEEMETTTNKLKMQLKSAQS----ELEQTRNTLKS 717
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
782-1041 |
5.54e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTRAlraefekgrEEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAwLLNREQELREEIRKGRD 861
Cdd:PRK04863 839 LRQLNRRRVELERALADH---------ESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADET-LADRVEEIREQLDEAEE 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 862 KEIELVIH-----RLEADMALAKEESEK---------AAESRIKRLRDKYEAeLSEL---------EQSERKL---QERC 915
Cdd:PRK04863 909 AKRFVQQHgnalaQLEPIVSVLQSDPEQfeqlkqdyqQAQQTQRDAKQQAFA-LTEVvqrrahfsyEDAAEMLaknSDLN 987
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 916 SELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQvIRQEFEDRLaasEEETRQAKAELATLQARQQL 995
Cdd:PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQ-MLQELKQEL---QDLGVPADSGAEERARARRD 1063
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 984880650 996 ELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQHRR 1041
Cdd:PRK04863 1064 ELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
852-1011 |
8.54e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 852 LREEIrKGRDKEIELVIHRLeADMA--LAKEESEKAA-ESRIKRLRdkyeAELSELEqSERklqercSELKGQLGEAEGE 928
Cdd:PRK09039 44 LSREI-SGKDSALDRLNSQI-AELAdlLSLERQGNQDlQDSVANLR----ASLSAAE-AER------SRLQALLAELAGA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 929 NLRLQGLVRQKERALEDAQAV-----------NEQLSSERSNLAQVirqefEDRLAASEEETRQAKAELATLQarqqlel 997
Cdd:PRK09039 111 GAAAEGRAGELAQELDSEKQVsaralaqvellNQQIAALRRQLAAL-----EAALDASEKRDRESQAKIADLG------- 178
|
170
....*....|....
gi 984880650 998 eevhRRVKTALARK 1011
Cdd:PRK09039 179 ----RRLNVALAQR 188
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
892-1041 |
9.10e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 9.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 892 RLRDKYEAELSELEQSERkLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEdR 971
Cdd:TIGR02169 661 APRGGILFSRSEPAELQR-LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE-R 738
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 984880650 972 LAASEEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSL--RTQHEAAVKRADHLEELLEQHRR 1041
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSR 809
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
635-960 |
9.40e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 635 DQLIEDKKVLSEKCEAVVAELKQEDQRCTERVAqAQAQHELEIKKLKELMSATEKARRE--KWISEKTKKIKEVtVRGLE 712
Cdd:pfam01576 738 EQGEEKRRQLVKQVRELEAELEDERKQRAQAVA-AKKKLELDLKELEAQIDAANKGREEavKQLKKLQAQMKDL-QRELE 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 713 PEIQ---KLIARHKQEVRRLKSLhEAELLQSDER--ASQRCLRQAEELREQLER--EKEALGQQERERARQRQRAELEEL 785
Cdd:pfam01576 816 EARAsrdEILAQSKESEKKLKNL-EAELLQLQEDlaASERARRQAQQERDELADeiASGASGKSALQDEKRRLEARIAQL 894
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 786 RQQLEESSSALtralraefeKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLLNREQELR-EEIRKGRDKEI 864
Cdd:pfam01576 895 EEELEEEQSNT---------ELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKlQEMEGTVKSKF 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 865 ELVIHRLEADMA-----LAKEESEKAAESRIKRLRDKYEAELSELEQSER-----------KLQERCSELKGQLGEAEGE 928
Cdd:pfam01576 966 KSSIAALEAKIAqleeqLEQESRERQAANKLVRRTEKKLKEVLLQVEDERrhadqykdqaeKGNSRMKQLKRQLEEAEEE 1045
|
330 340 350
....*....|....*....|....*....|..
gi 984880650 929 NLRLQGLVRQKERALEDAQAVNEQLSSERSNL 960
Cdd:pfam01576 1046 ASRANAARRKLQRELDDATESNESMNREVSTL 1077
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
889-1038 |
1.06e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 889 RIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQavnEQLSSERSNlaqvirqef 968
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE---EQLGNVRNN--------- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 969 edrlaaseEETRQAKAELATLQARQQlELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1038
Cdd:COG1579 89 --------KEYEALQKEIESLKRRIS-DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
578-941 |
1.16e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 578 LEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALS------RQLQRQREhyeaTIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSdasrkiGEIEKEIE----QLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 652 VAELKQEDQRCTERVaqaqAQHELEIKKLKELMSATEKARREKWISEKTKKIKEvtvrgLEPEIQKLIARHKQEVRRLKS 731
Cdd:TIGR02169 753 IENVKSELKELEARI----EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK-----LEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 732 LHEAELLQSDERASQRCLRQAEELREQLEREKEALGqqererarqrqRAELEELRQQLEESSSALtRALRAEFeKGREEQ 811
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-----------NGKKEELEEELEELEAAL-RDLESRL-GDLKKE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 812 ERRHQMELNTLKQqlELERQAWEAGRTRKEEAWLLNREQELREEIrkgrdKEIELVIHRLEadmalaKEESEKAAESRIK 891
Cdd:TIGR02169 891 RDELEAQLRELER--KIEELEAQIEKKRKRLSELKAKLEALEEEL-----SEIEDPKGEDE------EIPEEELSLEDVQ 957
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 984880650 892 RLRDKYEAELSELE-------QSERKLQERCSELKGQLGEAEGENLRLQGLVRQKER 941
Cdd:TIGR02169 958 AELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
882-1040 |
1.65e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 882 SEKAAESRIKRLRDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLRLQglvRQKERALEDAQAVNEQLSSERSNLA 961
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE---KEIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 962 QVIR---------QEFEDRLAASEEETRQAKAELATLQAR----QQLELEEVHRRVKTALARKEEAVSSLrtqhEAAVKR 1028
Cdd:TIGR02169 748 SLEQeienvkselKELEARIEELEEDLHKLEEALNDLEARlshsRIPEIQAELSKLEEEVSRIEARLREI----EQKLNR 823
|
170
....*....|..
gi 984880650 1029 ADHLEELLEQHR 1040
Cdd:TIGR02169 824 LTLEKEYLEKEI 835
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
677-997 |
2.05e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 677 IKKLKELMSATEK----ARREKWISEKTKKIKevtvrglepeiQKLIARHKQEVRRlkSLHEAELLQSDERASQRCLRQa 752
Cdd:COG5022 796 FIKLQPLLSLLGSrkeyRSYLACIIKLQKTIK-----------REKKLRETEEVEF--SLKAEVLIQKFGRSLKAKKRF- 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 753 eelreqLEREKEALgqqereraRQRQRAELEELRQQLEEsssaltralraefekgrEEQERRhqmELNTLKQQ-LELErq 831
Cdd:COG5022 862 ------SLLKKETI--------YLQSAQRVELAERQLQE-----------------LKIDVK---SISSLKLVnLELE-- 905
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 832 aWEAGRTRKEEAWLLNREQELREEirkgRDKEIELVIHRLEADMALAKEESEK-------AAESRIKRLRDKYEAELSEL 904
Cdd:COG5022 906 -SEIIELKKSLSSDLIENLEFKTE----LIARLKKLLNNIDLEEGPSIEYVKLpelnklhEVESKLKETSEEYEDLLKKS 980
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 905 EQSERKLQERCSELKG---QLGEAEGENLRLQ---GLVRQKERALEDAQAVNEQLSSERSNLAQviRQEFEDRLAASEEE 978
Cdd:COG5022 981 TILVREGNKANSELKNfkkELAELSKQYGALQestKQLKELPVEVAELQSASKIISSESTELSI--LKPLQKLKGLLLLE 1058
|
330
....*....|....*....
gi 984880650 979 TRQAKAELATLQARQQLEL 997
Cdd:COG5022 1059 NNQLQARYKALKLRRENSL 1077
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
862-1030 |
2.52e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 862 KEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYEAEL----SELEQSERKLQERCSELKGQLGEAEGENLRLQglvr 937
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrerrNELQKLEKRLLQKEENLDRKLELLEKREEELE---- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 938 QKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEEtrqakaelatlqARQQLeLEEVHRRVktalarKEEAVSS 1017
Cdd:PRK12704 114 KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE------------AKEIL-LEKVEEEA------RHEAAVL 174
|
170
....*....|...
gi 984880650 1018 LRTQHEAAVKRAD 1030
Cdd:PRK12704 175 IKEIEEEAKEEAD 187
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
890-1015 |
4.16e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 890 IKRLRDKYEAELSELEQSERKLQErcselkgQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFE 969
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEE-------LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 984880650 970 DRLAASEEETRQAKAELATLQARQQL-----ELEEVHRRVKTALARKEEAV 1015
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKK 627
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
611-705 |
4.89e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 611 ALSRQLQRQREHYEATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQrctERVAQAQAQHELEIKKLKELMSATEKA 690
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ---QAIKEAKKEADEIIKELRQLQKGGYAS 603
|
90
....*....|....*
gi 984880650 691 RREKWISEKTKKIKE 705
Cdd:PRK00409 604 VKAHELIEARKRLNK 618
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
573-1038 |
5.72e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 573 VMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQR-QREHYEATIQRHLAFIDQLIEDKKVLSEKCEAV 651
Cdd:TIGR00606 441 TIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKL 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 652 VAELKQEDQRCTER-----VAQAQAQHELEIKKLK-----ELMSAT----EKARREKWISEKTKKIK--EVTVRGLEPEI 715
Cdd:TIGR00606 521 DQEMEQLNHHTTTRtqmemLTKDKMDKDEQIRKIKsrhsdELTSLLgyfpNKKQLEDWLHSKSKEINqtRDRLAKLNKEL 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 716 QKLIARHKQEVRRLKSLhEAELLQSDERASQRCLRQAeELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSA 795
Cdd:TIGR00606 601 ASLEQNKNHINNELESK-EEQLSSYEDKLFDVCGSQD-EESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQS 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 796 LTRALRAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAWLL-------NREQELREEIRKGRDK--EIEL 866
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLglapgrqSIIDLKEKEIPELRNKlqKVNR 758
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 867 VIHRLEADMA---------LAKEESEKAAESRIKRLRDKYEaelsELEQSERKLQERCSELKGQLGEAEGENLR------ 931
Cdd:TIGR00606 759 DIQRLKNDIEeqetllgtiMPEEESAKVCLTDVTIMERFQM----ELKDVERKIAQQAAKLQGSDLDRTVQQVNqekqek 834
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 932 -------------LQGLVRQKERALEDAQAVNEQLSSERSNLAQVI--RQEFEDRLAASEEETRQAKAELAtlQARQQLE 996
Cdd:TIGR00606 835 qheldtvvskielNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELSTEVQSLIREIK--DAKEQDS 912
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 984880650 997 LEEVHRrvKTALARKEEAVSSLRTQHEAAVKRADHLEELLEQ 1038
Cdd:TIGR00606 913 PLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
782-1038 |
6.20e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 782 LEELRQQLEESSSALTRAlrAEFEKGREEQERRHQMELNTLKQQLELERQAWEAGRTRKEEAwllnrEQELREEIRKgrd 861
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNES--NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQS-----QEDLRNQLQN--- 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 862 keielVIHRLEADMALaKEESEKAAESRIKRLRD---KYEAELSEL--------EQSERKLQER-----------CSELK 919
Cdd:pfam15921 150 -----TVHELEAAKCL-KEDMLEDSNTQIEQLRKmmlSHEGVLQEIrsilvdfeEASGKKIYEHdsmstmhfrslGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 920 GQLGEAEGENLRLQGLVRQKERALedaqavnEQLSSERSNLAQVIRQEFEDRLAA--SEEETR----QAKAELATLQA-- 991
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQL-------EALKSESQNKIELLLQQHQDRIEQliSEHEVEitglTEKASSARSQAns 296
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 984880650 992 -RQQLELEEVHRRVKTA-----LARKEEAVSSLRTQ-HEAAVKRADHLEELLEQ 1038
Cdd:pfam15921 297 iQSQLEIIQEQARNQNSmymrqLSDLESTVSQLRSElREAKRMYEDKIEELEKQ 350
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
528-999 |
6.25e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 528 KLQSIMSFLDEMEKSGQDQLDSQQEgwvpEAGPGPLELGSEVSTSVMRLKLEVEEKKQAMLLLQRALAQQRDLTARRVKE 607
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQR----EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 608 TEKALSRQLQRQREHYEATIQR-----------HLAFIDQLIEDKKVLSEKC-----EAVVAELKQEDQRCTERVAQAQA 671
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTKEQihlqetrkkavVLARLLELQEEPCPLCGSCihpnpARQDIDNPGPLTRRMQRGEQTYA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 672 QHELEIKKLK-ELMSATEKARREKW--------ISEKTKKIKEVT-----VRGLEPEIQKLIARHKQEVRRLKSLHEAEL 737
Cdd:TIGR00618 539 QLETSEEDVYhQLTSERKQRASLKEqmqeiqqsFSILTQCDNRSKedipnLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 738 LQSDERASQRCLRQAEELREQLEREKE-ALGQQERERArqrqraeleelrQQLEESSSALTRALRAEFEKGREEQERRHQ 816
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLtALHALQLTLT------------QERVREHALSIRVLPKELLASRQLALQKMQ 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 817 MELNTLKQQLELERQAWEAGR---TRKEEAWLLNREQELREEIRK----GRDKEIELVIHRLEADMALAKEESEKAAESR 889
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLReleTHIEEYDREFNEIENASSSLGsdlaAREDALNQSLKELMHQARTVLKARTEAHFNN 766
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 890 IKRL--RDKYEAELSELEQSERKLQERCSELKGQLGEAEGENLR-----LQGLVRQKERALEDAQAVNEQLSSERSNLAQ 962
Cdd:TIGR00618 767 NEEVtaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLSRLEEKSATLGE 846
|
490 500 510
....*....|....*....|....*....|....*..
gi 984880650 963 VIRQEFEDrlaaseEETRQAKAELATLQARQQLELEE 999
Cdd:TIGR00618 847 ITHQLLKY------EECSKQLAQLTQEQAKIIQLSDK 877
|
|
| COG4192 |
COG4192 |
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ... |
861-1046 |
6.35e-03 |
|
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];
Pssm-ID: 443346 [Multi-domain] Cd Length: 640 Bit Score: 40.44 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 861 DKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE---AELSELEQSERKLQERCSELKGQLgEAEGENL-RLQGLV 936
Cdd:COG4192 61 EENSNELVAALPEFAAATNTTERSQLRNQLNTQLADIEellAELEQLTQDAGDLRAAVADLRNLL-QQLDSLLtQRIALR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 937 RQKERALEDAQAVNEQLSSERSNLAQVIRQEFEdRLAASEEETRQAKAELATLQARQQLELEEVhrRVKTAL-----ARK 1011
Cdd:COG4192 140 RRLQELLEQINWLHQDFNSELTPLLQEASWQQT-RLLDSVETTESLRNLQNELQLLLRLLAIEN--QIVSLLrevaaARD 216
|
170 180 190
....*....|....*....|....*....|....*
gi 984880650 1012 EEAVSSLRTQHEAAVKRADHLEELLEQHrrptPST 1046
Cdd:COG4192 217 QADVDNLFDRLQYLKDELDRNLQALKNY----PST 247
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
581-1035 |
6.80e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 6.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 581 EEKKQAMLLLQRALAQQRDLTARRVKETEKALSRQLQRQREHYeATIQRHLAFIDQLIEDKKVLSEKCEAVVAELKQEDQ 660
Cdd:TIGR00618 253 EEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 661 RCTERVAQAQAQHELEIKKLKELMSATEKARREKWISEKTKKIKEVTVRGLEPEIQKLIARHK-QEVRRLKSLHEAELLQ 739
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKlQSLCKELDILQREQAT 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 740 SDER-ASQRCLRQ------AEELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALtralrAEFEKGREEQE 812
Cdd:TIGR00618 412 IDTRtSAFRDLQGqlahakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL-----QTKEQIHLQET 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 813 RRHQMELNTLKQQLELER--------------QAWEAGRTRKEEAWLLNREQELREEIRKGRDKEIELVIHRLEADmalA 878
Cdd:TIGR00618 487 RKKAVVLARLLELQEEPCplcgscihpnparqDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLK---E 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 879 KEESEKAAESRIKRLRDKYEAELSELEQSERKLQ---ERCSELKGQLGEAEGENLR-LQGLVRQKERALEDAQaVNEQLS 954
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdltEKLSEAEDMLACEQHALLRkLQPEQDLQDVRLHLQQ-CSQELA 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 955 SERSNLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQLELEEVHRRVKTALARKEEAVSSLRTQHEAAVKRADHLEE 1034
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
.
gi 984880650 1035 L 1035
Cdd:TIGR00618 723 I 723
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
599-873 |
7.31e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 40.24 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 599 DLTARRVKETEKALSRQLQRQREHYEATiqrhlAFIDQLIEDKKVLSEKCEAVVAElkQEDQRCTERVAQAQAQHELEIK 678
Cdd:pfam02029 66 DRTAKREERRQKRLQEALERQKEFDPTI-----ADEKESVAERKENNEEEENSSWE--KEEKRDSRLGRYKEEETEIREK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 679 KLKELMSATEKARREKWISEKTKKIKEVTVR-----GLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRClrqaE 753
Cdd:pfam02029 139 EYQENKWSTEVRQAEEEGEEEEDKSEEAEEVptenfAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGE----E 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 754 ELREQLEREKEALGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKGREEQERRHQmELNTLKQQLELERQAW 833
Cdd:pfam02029 215 EVTKLKVTTKRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESEEFEKLRQKQQEAEL-ELEELKKKREERRKLL 293
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 984880650 834 EAGRTRKEEAwllNREQELREEIRKGRDKEiELVIHRLEA 873
Cdd:pfam02029 294 EEEEQRRKQE---EAERKLREEEEKRRMKE-EIERRRAEA 329
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
803-1047 |
7.36e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 803 EFEKGREEQERRhqmelnTLKQQLELERQAWEAGRTRKE--EAWLLNREQELR--EEIRKGRDKEIELVIHRLE----AD 874
Cdd:PTZ00121 1094 EEAFGKAEEAKK------TETGKAEEARKAEEAKKKAEDarKAEEARKAEDARkaEEARKAEDAKRVEIARKAEdarkAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 875 MALAKEESEKAAESRiKRLRDKYEAELSELEQSERKLQERCSELKGQLGEA-EGENLRLQGLVRQKERALEDAQavnEQL 953
Cdd:PTZ00121 1168 EARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEArKAEDAKKAEAVKKAEEAKKDAE---EAK 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 954 SSERSNLAQVIRQEFEDRLAASEEETRQAKAElatlQARQQLELEEVHRRVKTALARKEEAVsslrtqheaavKRADHLE 1033
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAE----EARKADELKKAEEKKKADEAKKAEEK-----------KKADEAK 1308
|
250
....*....|....
gi 984880650 1034 ELLEQHRRPTPSTK 1047
Cdd:PTZ00121 1309 KKAEEAKKADEAKK 1322
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
850-987 |
7.56e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 850 QELREEIRKGRDKEIELVIHRLEADMALAKEESE-KAAESRIKRLRDK---------YEA----------ELSELEQSER 909
Cdd:COG1579 34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEiEEVEARIKKYEEQlgnvrnnkeYEAlqkeieslkrRISDLEDEIL 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 984880650 910 KLQERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERSNLAQVIRQEFEDRLAASEEETRQAKAELA 987
Cdd:COG1579 114 ELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLALYERIRKRKNGLA 191
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
865-976 |
7.63e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 40.08 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880650 865 ELVIHRLEADMALA-KEESEKAAESRIKRLRDKyeaelSELEQSERKLQERCSELKGQLGEAegENLRLQGLVRQKERAL 943
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG-----EELDDLQKRLQTECEDLRSRVSEA--EALLLHDASGGEGGGA 100
|
90 100 110
....*....|....*....|....*....|...
gi 984880650 944 EDAQAVNEQLSSERSNLAQVIRQEFEDRLAASE 976
Cdd:PHA03252 101 TNGGEVNVDGGADRTWLAQSPERPADGGPSGER 133
|
|
| |
