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Conserved domains on  [gi|985701179|ref|NP_001306607|]
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transmembrane protein 39B isoform 3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmp39 super family cl10953
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
1-279 5.77e-137

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


The actual alignment was detected with superfamily member pfam10271:

Pssm-ID: 463038  Cd Length: 426  Bit Score: 393.71  E-value: 5.77e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179    1 MYIPFLQLNCDLRKTSLFNHMASMGPREAVSGLA-KSRDYLLTLRETWKQHtrqlYGPDAMPTHACCLSPSLIRSEVEFL 79
Cdd:pfam10271 151 VYLPIFGFQLDFRPTSPLEIIGWRKTRFCVGPLLrKSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVEYL 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179   80 KMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQ 159
Cdd:pfam10271 227 KLDFNRRIKQVLFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGCWQ 306
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179  160 KVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLRILNILLLLEGAVIVYQLY 239
Cdd:pfam10271 307 KVDPGPCSNTPQHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFLFHKPLRILNILIILEGAVIFYQLY 386
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 985701179  240 SLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYS 279
Cdd:pfam10271 387 SLLSSEKWHHTLSLALILFSNYYAFFKLLRDRIVLGKAYS 426
 
Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
1-279 5.77e-137

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


Pssm-ID: 463038  Cd Length: 426  Bit Score: 393.71  E-value: 5.77e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179    1 MYIPFLQLNCDLRKTSLFNHMASMGPREAVSGLA-KSRDYLLTLRETWKQHtrqlYGPDAMPTHACCLSPSLIRSEVEFL 79
Cdd:pfam10271 151 VYLPIFGFQLDFRPTSPLEIIGWRKTRFCVGPLLrKSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVEYL 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179   80 KMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQ 159
Cdd:pfam10271 227 KLDFNRRIKQVLFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGCWQ 306
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179  160 KVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLRILNILLLLEGAVIVYQLY 239
Cdd:pfam10271 307 KVDPGPCSNTPQHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFLFHKPLRILNILIILEGAVIFYQLY 386
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 985701179  240 SLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYS 279
Cdd:pfam10271 387 SLLSSEKWHHTLSLALILFSNYYAFFKLLRDRIVLGKAYS 426
 
Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
1-279 5.77e-137

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


Pssm-ID: 463038  Cd Length: 426  Bit Score: 393.71  E-value: 5.77e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179    1 MYIPFLQLNCDLRKTSLFNHMASMGPREAVSGLA-KSRDYLLTLRETWKQHtrqlYGPDAMPTHACCLSPSLIRSEVEFL 79
Cdd:pfam10271 151 VYLPIFGFQLDFRPTSPLEIIGWRKTRFCVGPLLrKSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVEYL 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179   80 KMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQ 159
Cdd:pfam10271 227 KLDFNRRIKQVLFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGCWQ 306
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985701179  160 KVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLRILNILLLLEGAVIVYQLY 239
Cdd:pfam10271 307 KVDPGPCSNTPQHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFLFHKPLRILNILIILEGAVIFYQLY 386
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 985701179  240 SLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYS 279
Cdd:pfam10271 387 SLLSSEKWHHTLSLALILFSNYYAFFKLLRDRIVLGKAYS 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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