|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
2-73 |
2.54e-38 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 135.35 E-value: 2.54e-38
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 998614206 2 GNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYT 73
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYG 72
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
243-482 |
4.09e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.10 E-value: 4.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 243 IKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNT 322
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 323 GIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfapQSLYN 402
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADALY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 403 MMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARL 482
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALA 228
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
266-562 |
1.65e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 109.05 E-value: 1.65e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 266 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 345
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 346 PDENLkdphahkssvtSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 425
Cdd:COG2956 106 DPDDA-----------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH---AYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 426 RSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfn 505
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP----------------------- 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 998614206 506 aahmlrqaslnEAAEKYYDLAARLRPNyPAALMNLGAILHLNGRLQKAEANYLRALQ 562
Cdd:COG2956 229 -----------EEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
315-567 |
4.02e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 105.20 E-value: 4.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 315 LASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKdphAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 394
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AH--------LALGNLYRRRGEYDRAIRIHQKLLERDPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 395 FApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQ 474
Cdd:COG2956 76 AE---ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 475 FLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAE 554
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEAL 232
|
250
....*....|...
gi 998614206 555 ANYLRALQLKPDD 567
Cdd:COG2956 233 ELLRKALELDPSD 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
313-562 |
5.34e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.93 E-value: 5.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 313 PTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMP 392
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEA-----LYNLGLAYLRLGRYEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 393 RQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHY 472
Cdd:COG0457 74 DDAE---ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 473 GQFLL-----EEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLN 547
Cdd:COG0457 151 GIALEklgryEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
250
....*....|....*
gi 998614206 548 GRLQKAEANYLRALQ 562
Cdd:COG0457 231 LALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
209-463 |
5.95e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 104.81 E-value: 5.95e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 209 LIFYATATLIVFYGLKtAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLY 286
Cdd:COG2956 2 LLPVAAALGWYFKGLN-YLLNGQPDKAIDLLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 287 NLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAHkssvtsclYN 366
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---AHAY--------CE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 367 LGKLYHEQGHYEEALSVYKEAIQKMPRQFAPqslYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 446
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARA---LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250
....*....|....*..
gi 998614206 447 RKSEAEKLFLKAIELDP 463
Cdd:COG2956 227 DPEEALELLRKALELDP 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
228-462 |
1.37e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 103.66 E-value: 1.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 228 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 305
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 306 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYK 385
Cdd:COG2956 134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL------DPDCARA-----LLLLAELYLEQGDYEEAIAALE 202
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 998614206 386 EAIQKMPRQFapqSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDhIPAHLTYGKLLALTGRKSEAEKLFLKAIELD 462
Cdd:COG2956 203 RALEQDPDYL---PALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
363-567 |
3.67e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.93 E-value: 3.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 363 CLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNMmGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLL 442
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--AEALYNL-GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 443 ALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKY 522
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY----------------------------------DEAIEA 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 998614206 523 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 567
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
228-462 |
3.67e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.93 E-value: 3.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 228 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 305
Cdd:COG0457 20 RLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 306 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYK 385
Cdd:COG0457 100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL---DPDDADAL--------YNLGIALEKLGRYEEALELLE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 998614206 386 EAiqkmpRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELD 462
Cdd:COG0457 169 KL-----EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
266-550 |
1.20e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 102.38 E-value: 1.20e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 266 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 345
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 346 pdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 425
Cdd:COG3914 108 ------NPDNAEA-----LFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRAL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 426 RSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFN 505
Cdd:COG3914 174 ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 998614206 506 AAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRL 550
Cdd:COG3914 254 ALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPNPRDPDRKL 298
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
228-351 |
2.07e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 101.61 E-value: 2.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 228 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 305
Cdd:COG3914 90 ALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 998614206 306 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLK 351
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
365-577 |
1.12e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 1.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 365 YNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLAL 444
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 445 TGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYD 524
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 998614206 525 LAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKL 577
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
254-401 |
1.79e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 98.53 E-value: 1.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 254 LGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTE 333
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 998614206 334 EARRTFLKCSEI-PDenlkDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLY 401
Cdd:COG3914 164 EAIAALRRALELdPD----NAEAL--------NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
348-574 |
9.03e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.13 E-value: 9.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 348 ENLKDPHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRS 427
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 428 KTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaa 507
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL------------------------- 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 998614206 508 hmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 574
Cdd:COG3914 163 ---------EEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
227-426 |
1.12e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.40 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 227 IRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHY 304
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPddAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 305 YKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGHYEEALSVY 384
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL-----------PALPRLAELYEKLGDPEEALELL 235
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 998614206 385 KEAIQKMPRqfapQSLYNMMGEAYMRLSKLPEAEHWYMESLR 426
Cdd:COG2956 236 RKALELDPS----DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
401-574 |
3.73e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 86.98 E-value: 3.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 401 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEA 480
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 481 RLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRA 560
Cdd:COG0457 91 RY----------------------------------EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA 136
|
170
....*....|....
gi 998614206 561 LQLKPDDVITQSNL 574
Cdd:COG0457 137 LELDPDDADALYNL 150
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
316-463 |
1.12e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 82.55 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 316 ASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAhkssvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQF 395
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDN---PEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 998614206 396 ApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDP 463
Cdd:COG4783 73 E---ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
396-567 |
1.23e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.77 E-value: 1.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 396 APQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTkgncymhygqf 475
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 476 lleearlieaaemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEA 555
Cdd:COG4783 71 -----------------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
170
....*....|..
gi 998614206 556 NYLRALQLKPDD 567
Cdd:COG4783 128 ALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
279-431 |
2.07e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 2.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 279 SNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI-PDEnlkdPHAHk 357
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELdPDE----PEAR- 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 998614206 358 ssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLRSKTDH 431
Cdd:COG4783 76 -------LNLGLALLKAGDYDEALALLEKALKLDPEH--PEAYLR-LARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
248-394 |
4.24e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.53 E-value: 4.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 248 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILM 327
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 998614206 328 NQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 394
Cdd:COG4783 84 KAGDYDEALALLEKALKL---DPEHPEAY--------LRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
364-482 |
5.15e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.15 E-value: 5.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 364 LYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 443
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110
....*....|....*....|....*....|....*....
gi 998614206 444 LTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARL 482
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
225-337 |
4.21e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.41 E-value: 4.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 225 TAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 302
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPdfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
90 100 110
....*....|....*....|....*....|....*
gi 998614206 303 HYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARR 337
Cdd:COG3914 201 AAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
247-576 |
5.32e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.51 E-value: 5.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 247 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIIL 326
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 327 MNQGRTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLYHEQGHYEEALSVYKEAIQKmprqfAPQSLYNM-MG 405
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 406 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPtkgncymhygqflleearliea 485
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------------------- 801
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 486 aemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 565
Cdd:TIGR02917 802 -------------DNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868
|
330
....*....|.
gi 998614206 566 DDVITQSNLRK 576
Cdd:TIGR02917 869 EAAAIRYHLAL 879
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
266-407 |
5.77e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.88 E-value: 5.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 266 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 345
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 998614206 346 pdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEA 407
Cdd:COG4235 81 ------DPDNPEA-----LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
248-389 |
1.28e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 70.33 E-value: 1.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 248 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILM 327
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 998614206 328 NQGRTEEARRTFLKCSEIPDEN------------LKDPHAHKSSVTSclyNLGKLYHEQGHYEEALSVYKEAIQ 389
Cdd:COG4785 153 YLGRYELAIADLEKALELDPNDperalwlylaerKLDPEKALALLLE---DWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
224-349 |
4.71e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.75 E-value: 4.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 224 KTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEA 301
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 998614206 302 LHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDEN 349
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
370-463 |
7.63e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.52 E-value: 7.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 370 LYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKS 449
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPE---LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|....
gi 998614206 450 EAEKLFLKAIELDP 463
Cdd:COG5010 140 EAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
288-579 |
4.58e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.96 E-value: 4.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 288 LGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAHKSSVTSclynl 367
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL---GRADLLLILS----- 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 368 gklYHEQGHYEEALSVYKEAIQKMPRQfapQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTD----------------- 430
Cdd:TIGR02917 441 ---YLRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDffpaaanlaridiqegn 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 431 -----------------HIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAA 493
Cdd:TIGR02917 515 pddaiqrfekvltidpkNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 494 EL--DSTEFDVVFNAAHmLRQASLNEAAEKYYDLAARLrPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQ 571
Cdd:TIGR02917 595 DAapDSPEAWLMLGRAQ-LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672
|
....*...
gi 998614206 572 SNLRKLWN 579
Cdd:TIGR02917 673 IGLAQLLL 680
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
239-349 |
1.09e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.33 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 239 YRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLA 316
Cdd:COG4235 6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|...
gi 998614206 317 SAYLNTGIILMNQGRTEEARRTFLKCSEIPDEN 349
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
247-577 |
1.66e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 67.42 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 247 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIIL 326
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 327 MNQGRTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLyNMMGE 406
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYL-----------PALLLAGASEYQLGNLEQAYQYLNQILKYAPNS--HQAR-RLLAS 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 407 AYMRLSKlpeaehwYMESLRSKTDHIPAHLTYGKLLALTGRK-------SEAEKLFLKAIELDPTKGNCYMHYGQFLLEE 479
Cdd:TIGR02917 338 IQLRLGR-------VDEAIATLSPALGLDPDDPAALSLLGEAylalgdfEKAAEYLAKATELDPENAAARTQLGISKLSQ 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 480 ARLIEAAEMAKKAAELDSTEFDV-VFNAAHMLRQASLNEAAEkyydLAARLRPNYP--AALMNL-GAILHLNGRLQKAEA 555
Cdd:TIGR02917 411 GDPSEAIADLETAAQLDPELGRAdLLLILSYLRSGQFDKALA----AAKKLEKKQPdnASLHNLlGAIYLGKGDLAKARE 486
|
330 340
....*....|....*....|..
gi 998614206 556 NYLRALQLKPDDVITQSNLRKL 577
Cdd:TIGR02917 487 AFEKALSIEPDFFPAAANLARI 508
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
212-341 |
1.76e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 1.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 212 YATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLL 291
Cdd:COG5010 18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 998614206 292 LQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLK 341
Cdd:COG5010 98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
370-463 |
2.08e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.57 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 370 LYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHwYMESLRSKTDHIPAHLTYGKLLALTGRKS 449
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....
gi 998614206 450 EAEKLFLKAIELDP 463
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
416-567 |
2.78e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.18 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 416 EAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGncymhygqflleearlieaaemakkaael 495
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA----------------------------- 51
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 998614206 496 dstefDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 567
Cdd:COG4235 52 -----DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
266-394 |
5.32e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 5.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 266 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 345
Cdd:COG5010 38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 998614206 346 PDENlkdPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 394
Cdd:COG5010 118 SPDN---PNAY--------SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
291-393 |
8.39e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.64 E-value: 8.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 291 LLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRtFLKCSEIpdeNLKDPHAhkssvtscLYNLGKL 370
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---DPNNAEA--------LLNLAEL 68
|
90 100
....*....|....*....|...
gi 998614206 371 YHEQGHYEEALSVYKEAIQKMPR 393
Cdd:COG3063 69 LLELGDYDEALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
257-351 |
1.85e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 257 VLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKlAIGSRPTLASAYLNTGIILMNQGRTEEAR 336
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 998614206 337 RTFLKCSEIPDENLK 351
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
469-574 |
2.27e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 469 YMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQaslNEAAEKYYDLAARLRPNYPAALMNLGAILHLNG 548
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD---FEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100
....*....|....*....|....*.
gi 998614206 549 RLQKAEANYLRALQLKPDDVITQSNL 574
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNL 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
225-590 |
3.81e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.79 E-value: 3.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 225 TAIRNGDWQNEEMLYRSGIKVNPAKA--WGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 302
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNAslHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 303 HYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEipdenlKDPHAHKSSVtsclyNLGKLYHEQGHYEEALS 382
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE------LNPQEIEPAL-----ALAQYYLGKGQLKKALA 588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 383 VYKEAIQKMPRqfaPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELD 462
Cdd:TIGR02917 589 ILNEAADAAPD---SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 463 PTKGNCYMHYGQFLLEEARL---IEAAEMAKKAAELDSTEFDVVFNAAhmLRQASLnEAAEKYYDLAARLRPNyPAALMN 539
Cdd:TIGR02917 666 PDNTEAQIGLAQLLLAAKRTesaKKIAKSLQKQHPKAALGFELEGDLY--LRQKDY-PAAIQAYRKALKRAPS-SQNAIK 741
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 998614206 540 LGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWnIMEKQGLKTSK 590
Cdd:TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIK 791
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
267-427 |
4.16e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 4.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 267 AESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIp 346
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 347 deNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfapQSLYNMMGEAYMRLSKLPEAEHWYMESLR 426
Cdd:COG5010 84 --DPNNPELY--------YNLALLYSRSGDKDEAKEYYEKALALSPDN---PNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
.
gi 998614206 427 S 427
Cdd:COG5010 151 T 151
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
441-566 |
1.72e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.18 E-value: 1.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 441 LLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAE 520
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY----------------------------------DEAI 46
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 998614206 521 KyYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 566
Cdd:COG3063 47 A-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
267-460 |
1.79e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.39 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 267 AESAYRNALYYRsNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI- 345
Cdd:COG4785 59 AAERIDRALALP-DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELd 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 346 PDenlkDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPrqfapqslynmmgeaymrlsKLPEAEHW-YMES 424
Cdd:COG4785 138 PD----YAYAY--------LNRGIALYYLGRYELAIADLEKALELDP--------------------NDPERALWlYLAE 185
|
170 180 190
....*....|....*....|....*....|....*...
gi 998614206 425 LRSKTDHIPAHLT--YGKLLALTGRKSEAEKLFLKAIE 460
Cdd:COG4785 186 RKLDPEKALALLLedWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
433-577 |
3.34e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 433 PAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrq 512
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL------------------------------ 54
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 998614206 513 aslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKL 577
Cdd:COG4783 55 ----DEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
406-565 |
3.67e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 3.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 406 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLiea 485
Cdd:COG5010 28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK--- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 486 aemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 565
Cdd:COG5010 105 -------------------------------DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
315-389 |
5.58e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 53.16 E-value: 5.58e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 998614206 315 LASAYLNTGIILMNQGRTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLYHEQGHYEEALSVYKEAIQ 389
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
510-574 |
6.62e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 6.62e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 998614206 510 LRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEAnYLRALQLKPDDVITQSNL 574
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
226-315 |
6.81e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 6.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 226 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEsAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 303
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 998614206 304 YYKLAIGSRPTL 315
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
379-481 |
7.66e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.24 E-value: 7.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 379 EALSVYKEAIQKMPRQfaPQSLYnMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKA 458
Cdd:COG4235 1 EAIARLRQALAANPND--AEGWL-LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
|
90 100
....*....|....*....|...
gi 998614206 459 IELDPTKGNCYMHYGQFLLEEAR 481
Cdd:COG4235 78 LALDPDNPEALYLLGLAAFQQGD 100
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
364-482 |
1.65e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 364 LYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 443
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 998614206 444 LTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARL 482
Cdd:COG5010 100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
369-463 |
1.71e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 369 KLYHEQGHYEEALSVYKEAIQKMPR-QFAPQSLYnMMGEAYMRLSKLPEAEHWYMESLRSKTDHIP---AHLTYGKLLAL 444
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLE 79
|
90
....*....|....*....
gi 998614206 445 TGRKSEAEKLFLKAIELDP 463
Cdd:COG1729 80 LGDYDKARATLEELIKKYP 98
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
194-313 |
4.61e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.66 E-value: 4.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 194 ARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAY 271
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 998614206 272 RNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRP 313
Cdd:COG5010 112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
225-472 |
4.69e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.25 E-value: 4.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 225 TAIRNGDWQNEEMLYRSGIKVNPAK--AWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 302
Cdd:TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSalALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 303 HYYKLAIGSRPTLASAYLNTGIILMNQGRTEEAR---RTFLKCSEIPDENLKDPHAH---------------------KS 358
Cdd:TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIqayRKALKRAPSSQNAIKLHRALlasgntaeavktleawlkthpND 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 359 SVTscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNMmgeAYMRL-SKLPEAEHWYMESLRSKtDHIPAHL- 436
Cdd:TIGR02917 770 AVL--RTALAELYLAQKDYDKAIKHYQTVVKKAPDN--AVVLNNL---AWLYLeLKDPRALEYAERALKLA-PNIPAILd 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 998614206 437 TYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHY 472
Cdd:TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
407-482 |
5.18e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 5.18e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 998614206 407 AYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKlFLKAIELDPTKGNCYMHYGQFLLEEARL 482
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDY 75
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
294-392 |
5.19e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.53 E-value: 5.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 294 ENSRFAEALHYYKLAIGSRPT---LASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHAhkssvtscLYNLGKL 370
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA--------LLKLGLS 76
|
90 100
....*....|....*....|..
gi 998614206 371 YHEQGHYEEALSVYKEAIQKMP 392
Cdd:COG1729 77 YLELGDYDKARATLEELIKKYP 98
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
265-430 |
9.81e-08 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 51.98 E-value: 9.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 265 SEAESAYrnaLYYRSNMAdmlynlgllLQENSRFAEALHYYK--LAIGSRPTLASAYL-NTGIILMNQGRTEEARRTFLK 341
Cdd:PRK02603 30 KKAKEAF---VYYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 342 CSEipdENLKDPhahkssvtSCLYNLGKLYHEQG--------------HYEEALSVYKEAIQKMPRQFApqslynmmgea 407
Cdd:PRK02603 98 ALE---LNPKQP--------SALNNIAVIYHKRGekaeeagdqdeaeaLFDKAAEYWKQAIRLAPNNYI----------- 155
|
170 180
....*....|....*....|...
gi 998614206 408 ymrlsklpEAEHWYMESLRSKTD 430
Cdd:PRK02603 156 --------EAQNWLKTTGRSNID 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
507-574 |
1.21e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 1.21e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 998614206 507 AHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 574
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
366-568 |
3.26e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.45 E-value: 3.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 366 NLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKT---DHIPAHLTYGKLL 442
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALalpDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 443 ALTGRKSEAEKLFLKAIELDPTKGNCYMHYGqflleearlieaaemakkaaeldstefdvvfnAAHMLRQAslNEAAEKY 522
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRG--------------------------------LAYLLLGD--YDAALED 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 998614206 523 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDV 568
Cdd:COG4785 130 FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
504-574 |
3.48e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.45 E-value: 3.48e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 998614206 504 FNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 574
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
365-561 |
6.32e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 6.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 365 YNLGKLYHEQGHYEEALSVYKEAIQ-KMPR-QFAPQ--SLYNMMGEAYMRLSKLPEAehwymeSLRSKTDHIPAHLTYGK 440
Cdd:TIGR02917 60 FLLGKIYLALGDYAAAEKELRKALSlGYPKnQVLPLlaRAYLLQGKFQQVLDELPGK------TLLDDEGAAELLALRGL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 441 LLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAE 520
Cdd:TIGR02917 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 998614206 521 KYYDLAARLRPNYPAALMNLGAILHLNGRLQKAE---------------ANYLRAL 561
Cdd:TIGR02917 214 AAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhadallkkapnsplAHYLKAL 269
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
236-455 |
7.02e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 50.65 E-value: 7.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 236 EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNalyyrsnmADMLYNlglllqensrfaealhyyklaigsRPTL 315
Cdd:COG4700 48 EVLPELRNSRDARRVQRAARNALDPGRELRELEKALEF--------ADTVQN------------------------RVRL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 316 ASAYLntgiilmNQGRTEEARRTFLKCseipdenLKDPHAHKSSVtscLYNLGKLYHEQGHYEEALSvYKEAIQKMPRQF 395
Cdd:COG4700 96 ADALL-------ELGRYDEAIELYEEA-------LTGIFADDPHI---LLGLAQALFELGRYAEALE-TLEKLIAKNPDF 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 396 APQSLYNMMGEAYMRLSKLPEAEHWYmESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLF 455
Cdd:COG4700 158 KSSDAHLLYARALEALGDLEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEAKELL 216
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
501-585 |
9.16e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.65 E-value: 9.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 501 DVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNlrkLWNI 580
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN---LGLA 81
|
....*
gi 998614206 581 MEKQG 585
Cdd:COG4783 82 LLKAG 86
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
265-389 |
1.33e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 51.78 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 265 SEAESAYRNALYYRsnMADMLYNLGLLLQENSRFAEALH------YYKLAIGSRPTLASAYLNTGIILMnqGRTEEARRT 338
Cdd:COG3899 737 PDPEEEYRLALLLE--LAEALYLAGRFEEAEALLERALAaralaaLAALRHGNPPASARAYANLGLLLL--GDYEEAYEF 812
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 998614206 339 FLKCSEIPDEnlkdpHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQ 389
Cdd:COG3899 813 GELALALAER-----LGDRRLEARALFNLGFILHWLGPLREALELLREALE 858
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
300-530 |
2.26e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 50.75 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 300 EALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKdPHAHkssvtsclynLGKLYHEQGHYEE 379
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-SHIQ----------LGVTQYKEGSIAS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 380 ALSVYKEAIQKMPRqfAPQsLYNMMGEAYMRLSKLPEAEHWYMES--LRSKTDHIPAHLT--YGKLLALTGRK---SEAE 452
Cdd:TIGR00990 452 SMATFRRCKKNFPE--APD-VYNYYGELLLDQNKFDEAIEKFDTAieLEKETKPMYMNVLplINKALALFQWKqdfIEAE 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 453 KLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEfdvvfnaAHMLRQASLNEAA-------EKYYDL 525
Cdd:TIGR00990 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-------GELVQAISYAEATrtqiqvqEDYPVL 601
|
....*
gi 998614206 526 AARLR 530
Cdd:TIGR00990 602 ASKLQ 606
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
281-345 |
3.32e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 3.32e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 998614206 281 MADMLYNLGLLLQENSRFAEALHYYKLAI--------GSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 345
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
261-339 |
6.98e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.37 E-value: 6.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 261 QSKISEAESAYRNAL--YYRSNMA-DMLYNLGLLLQENSRFAEALHYYKLAIGSRPT---LASAYLNTGIILMNQGRTEE 334
Cdd:COG1729 6 AGDYDEAIAAFKAFLkrYPNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85
|
....*
gi 998614206 335 ARRTF 339
Cdd:COG1729 86 ARATL 90
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
298-563 |
1.21e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 48.32 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 298 FAEALHYYKLAI------GSRPTLASAYLNTGIILMNQGRTEEARRTFLKC--SEIPDENLKDPHAHKSSVTSCLYNLGK 369
Cdd:COG3899 721 YAEALRYLERALellppdPEEEYRLALLLELAEALYLAGRFEEAEALLERAlaARALAALAALRHGNPPASARAYANLGL 800
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 370 LYHeqGHYEEALSVYKEAIQKMPRQFAPQSL---YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 446
Cdd:COG3899 801 LLL--GDYEEAYEFGELALALAERLGDRRLEaraLFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAA 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 447 RKSEAEKLFLKAIELDPTKGNCYM----HYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKY 522
Cdd:COG3899 879 AAAAAAALAAAAAAAARLLAAAAAalaaAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAAL 958
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 998614206 523 YDLAARLRPN--YPAALMNLGAILHLNGRLQKAEANYLRALQL 563
Cdd:COG3899 959 ALAAAAAAAAaaALAAAAAAAAAAAAAAAAAALEAAAAALLAL 1001
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
285-461 |
1.53e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 47.24 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 285 LYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAhksSVTSCL 364
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL------DPDG---GYEKYL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 365 YnLGKLyhEQGhyEEALSVYKEAIQKMPRQFAPQS------------LYNMMGEA-------YMR-LSKLPEAE---HWY 421
Cdd:cd24142 74 Y-LGQL--SGG--EEALQYYEKGIEILEEELQALQaasaeaeeeaeeLKRKLSSAlcalaeiYMTdLCDEPDAEqrcEEL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 998614206 422 MES-LRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIEL 461
Cdd:cd24142 149 ITKaLELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
504-567 |
1.99e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 42.71 E-value: 1.99e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 998614206 504 FNAAHMLRQASLNEAAEKYYDLAARLRPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPDD 567
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
366-566 |
2.16e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 46.18 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 366 NLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPqslYNMMGEAYMRLsklpeaehwymeslrsktdhipahltygkllalt 445
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLA---YLALALYYQQL---------------------------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 446 GRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDL 525
Cdd:TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------------------------------EQAMQQFEQ 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 998614206 526 AARLrPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPD 566
Cdd:TIGR02521 125 AIED-PLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
232-390 |
4.29e-05 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 45.80 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 232 WQNEEMLYRSGIKVNPaKAWG----NLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLG-LLLQENSRFAEALHYYK 306
Cdd:cd24145 128 KAVEILLKLGELWMSP-SEVGafleELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHsLVLMNNEAAELALHALR 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 307 LAIGSRPTLASAYLNTGiilmNQGRTEEARRTF---LKCSEIPDENLKDPHAHKSSVTScLYNLGKLYHEQGHYEEALSV 383
Cdd:cd24145 207 KPLSSTLIEASRLPQKS----RDQLLEAALKWAqkaLDVAKSIKPKDRDPECDQACALA-LYNLGVIAEMLGNLDEARKL 281
|
....*..
gi 998614206 384 YKEAIQK 390
Cdd:cd24145 282 YKEAISL 288
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
364-393 |
6.22e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.20 E-value: 6.22e-05
10 20 30
....*....|....*....|....*....|
gi 998614206 364 LYNLGKLYHEQGHYEEALSVYKEAIQKMPR 393
Cdd:pfam07719 4 LYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
534-567 |
6.41e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 6.41e-05
10 20 30
....*....|....*....|....*....|....
gi 998614206 534 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 567
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
260-344 |
1.46e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 42.69 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 260 SQSKISEAESAYRNALYYRSNMAD---MLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGII-------LMNQ 329
Cdd:CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIchyrgeqAIEQ 126
|
90
....*....|....*
gi 998614206 330 GRTEEARRTFLKCSE 344
Cdd:CHL00033 127 GDSEIAEAWFDQAAE 141
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
248-309 |
1.88e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.06 E-value: 1.88e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 248 AKAWGNLGNVLKSQSKISEAESAYRNALY--------YRSNMADMLYNLGLLLQENSRFAEALHYYKLAI 309
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
244-566 |
2.11e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 244 KVNP--AKAWGNLGnvlKSQSKISEAESAYRNAlyyRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLN 321
Cdd:TIGR02917 91 QVLPllARAYLLQG---KFQQVLDELPGKTLLD---DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLG 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 322 TGIILMNQGRTEEARrtflkcsEIPDENLK-DPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRqfAPQSL 400
Cdd:TIGR02917 165 LAQLALAENRFDEAR-------ALIDEVLTaDPGNVDA-----LLLKGDLLLSLGNIELALAAYRKAIALRPN--NIAVL 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 401 YNmMGEAYMRLSKLPEAE----------------HWY------------------MESLRSKTDHIPAHLTYGKLLALTG 446
Cdd:TIGR02917 231 LA-LATILIEAGEFEEAEkhadallkkapnsplaHYLkalvdfqkknyedaretlQDALKSAPEYLPALLLAGASEYQLG 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 447 RKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTE---FDVVFNAAHMLRQAslnEAAEKYY 523
Cdd:TIGR02917 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDpaaLSLLGEAYLALGDF---EKAAEYL 386
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 998614206 524 DLAARLRPNYPAALMNLGaILHL-NGRLQKAEANYLRALQLKPD 566
Cdd:TIGR02917 387 AKATELDPENAAARTQLG-ISKLsQGDPSEAIADLETAAQLDPE 429
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
368-411 |
2.60e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 2.60e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 998614206 368 GKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRL 411
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDN--PEAYYN-LGLAYYKL 41
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
505-566 |
2.76e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 2.76e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 505 NAAHMLRQASLNEAAEKYYDLAARL--------RPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 566
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
534-567 |
5.47e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 5.47e-04
10 20 30
....*....|....*....|....*....|....
gi 998614206 534 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 567
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
363-392 |
5.53e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 5.53e-04
10 20 30
....*....|....*....|....*....|
gi 998614206 363 CLYNLGKLYHEQGHYEEALSVYKEAIQKMP 392
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
286-341 |
6.00e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 6.00e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 998614206 286 YNLGLLLQENSRFAEALHYYKLAIGSRPTL---ASAYLNTGIILMNQGRTEEARRTFLK 341
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESpdaAAALLLLGLAALRQGRLAEAAAAYRA 59
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
363-389 |
8.15e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.13 E-value: 8.15e-04
10 20
....*....|....*....|....*..
gi 998614206 363 CLYNLGKLYHEQGHYEEALSVYKEAIQ 389
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALA 27
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
364-389 |
9.02e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 9.02e-04
10 20
....*....|....*....|....*.
gi 998614206 364 LYNLGKLYHEQGHYEEALSVYKEAIQ 389
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALE 29
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
224-309 |
9.23e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 9.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 224 KTAIRNGDWQNEEMLYRSGIKVNP-----AKAWGNLGNVLKSQSKISEAESAYRNALYYRSN---MADMLYNLGLLLQEN 295
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90
....*....|....
gi 998614206 296 SRFAEALHYYKLAI 309
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
534-566 |
1.39e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 1.39e-03
10 20 30
....*....|....*....|....*....|...
gi 998614206 534 PAALMNLGAILHLNGRLQKAEANYLRALQLKPD 566
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
517-567 |
1.69e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.69 E-value: 1.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 998614206 517 EAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 567
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| DUF3856 |
pfam12968 |
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP ... |
373-461 |
1.92e-03 |
|
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family. A DALI search gives hits with the putative peptidyl-prolyl isomerase 2fbn (Z=16), the SGTA protein (Z=16), the PLCR protein 2qfc (Z=16), a putative FK506-binding protein (PDB:1qz2-A; DALI Z-score 15.3; RMSD 2.9; 16% sequence identity within 132 superimposed residues), and with the tetratricopeptide repeats of the protein phosphatase 5 (PDB:2bug; DALI Z-score 15.1; RMSD 2.5; 19% sequence identity within 117 superimposed residues).
Pssm-ID: 463761 [Multi-domain] Cd Length: 142 Bit Score: 39.07 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 373 EQGHYEEALSVYKEAIQkMPRQFAPQSLYNMMG----------EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKL- 441
Cdd:pfam12968 21 EAAAFEEAAESYRRAME-MSRTIPTEEAFDYDGfdafchaglsEALIGLGRYEEALHSAEKALRYFNRRGELHQDEGKLw 99
|
90 100 110
....*....|....*....|....*....|
gi 998614206 442 --------LAL--TGRKSEAEKLFLKAIEL 461
Cdd:pfam12968 100 iaavfskaRALegLGRKEEAIKYFRMAGEM 129
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
253-313 |
1.97e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 1.97e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 998614206 253 NLGNVLKSQSKISEAESAYRNAL---YYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRP 313
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
316-416 |
2.95e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 39.86 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 316 ASAYLNTGIILMNQGRTEEARRTFlkcseipdENLKD-----PHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQK 390
Cdd:COG4105 32 AEELYEEAKEALEKGDYEKAIKLF--------EELEPrypgsPYAEQA-----QLMLAYAYYKQGDYEEAIAAADRFIKL 98
|
90 100
....*....|....*....|....*..
gi 998614206 391 MPR-QFAPQSLYnMMGEAYMRLSKLPE 416
Cdd:COG4105 99 YPNsPNADYAYY-LRGLSYYEQSPDSD 124
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
506-563 |
3.93e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 40.23 E-value: 3.93e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 998614206 506 AAHMLRQASLNEAAEKYYDLAARL-----RPNYPAAL-MNLGAILHLNGRLQKAEANYLRALQL 563
Cdd:COG3899 711 AARRALARGAYAEALRYLERALELlppdpEEEYRLALlLELAEALYLAGRFEEAEALLERALAA 774
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
226-338 |
4.95e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998614206 226 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKsQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 303
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPdnAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858
|
90 100 110
....*....|....*....|....*....|....*
gi 998614206 304 YYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRT 338
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
248-275 |
5.05e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 5.05e-03
10 20
....*....|....*....|....*...
gi 998614206 248 AKAWGNLGNVLKSQSKISEAESAYRNAL 275
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
360-389 |
5.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.17 E-value: 5.29e-03
10 20 30
....*....|....*....|....*....|
gi 998614206 360 VTSCLYNLGKLYHEQGHYEEALSVYKEAIQ 389
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALA 30
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
517-585 |
6.21e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 6.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 998614206 517 EAAEKYYDLAARLRPN---YPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQG 585
Cdd:COG1729 10 DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
399-461 |
8.48e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.44 E-value: 8.48e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 998614206 399 SLYNMMGEAYMRLSKLPEAEHWYMESLR-----SKTDHIP---AHLTYGKLLALTGRKSEAEKLFLKAIEL 461
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarrlLGPDHPLtatTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
297-357 |
8.73e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.25 E-value: 8.73e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 998614206 297 RFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFlkcSEIPDENLKDPHAHK 357
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALL---AALPAADPDDPRYAA 60
|
|
| |
