NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1007362507|ref|NP_001308031|]
View 

trafficking protein particle complex subunit 12 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 542-687 2.77e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 2.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 621
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1007362507 622 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 687
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PHA03169 super family cl27451
hypothetical protein; Provisional
 3-174 1.07e-07

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.98  E-value: 1.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169   92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169  166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                         170       180
                  ....*....|....*....|...
gi 1007362507 152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169  246 PFPGHRSHSYTVVGWKPSTRPGG 268
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
93-264 1.15e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003  359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003  435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                         170
                  ....*....|....*.
gi 1007362507 249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003  511 RAPAAASREDAPAAAA 526
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 542-687 2.77e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 2.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 621
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1007362507 622 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 687
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PHA03169 PHA03169
hypothetical protein; Provisional
 3-174 1.07e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.98  E-value: 1.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169   92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169  166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                         170       180
                  ....*....|....*....|...
gi 1007362507 152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169  246 PFPGHRSHSYTVVGWKPSTRPGG 268
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 549-608 9.53e-05

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.27  E-value: 9.53e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1007362507 549 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 608
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-264 1.15e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003  359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003  435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                         170
                  ....*....|....*.
gi 1007362507 249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003  511 RAPAAASREDAPAAAA 526
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 542-687 2.77e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 2.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 621
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1007362507 622 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 687
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
546-702 1.40e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 1.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 546 RVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMN 625
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEALNN 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1007362507 626 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 702
Cdd:COG0457    82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA---DALYNLGIALE 155
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 537-726 5.41e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 5.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 537 IRLWRSRLGR------VMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVT 610
Cdd:COG2956    62 IRIHQKLLERdpdraeALLELAQDYLKAGLLDRAEELLEKLLELDPDD-AEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 611 QKldglqgKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlh 690
Cdd:COG2956   141 PE------NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL-- 212

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1007362507 691 eSVLFNLTTMYElESSRSMQKKQALLEAVAGKEGDS 726
Cdd:COG2956   213 -PALPRLAELYE-KLGDPEEALELLRKALELDPSDD 246
PHA03169 PHA03169
hypothetical protein; Provisional
 3-174 1.07e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.98  E-value: 1.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169   92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169  166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                         170       180
                  ....*....|....*....|...
gi 1007362507 152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169  246 PFPGHRSHSYTVVGWKPSTRPGG 268
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
546-718 1.74e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 1.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 546 RVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvtQKLDGLQGKIMVLMN 625
Cdd:COG0457    43 EALYNLGLAYLRLGRYEEALADYEQALELDPDD-AEALNNLGLALQALGRYEEALEDYD------KALELDPDDAEALYN 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 626 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELES 705
Cdd:COG0457   116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195

                         170
                  ....*....|...
gi 1007362507 706 SRSMQKKQALLEA 718
Cdd:COG0457   196 LLALLLALEQALR 208
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 549-691 7.57e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 7.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 549 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKldglqgKIMVLMNSAF 628
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQ 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1007362507 629 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPR--HYLHE 691
Cdd:COG2956    85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnaHAYCE 149
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 91-205 1.21e-05

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 48.46  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  91 EAEPGGEGDPGPEpAGTPSPSGEADGDcAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPvAEPVPvctifsqrAPPA 170
Cdd:PHA03264  259 EESKGYEPPPAPS-GGSPAPPGDDRPE-AKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAG-GEPKP--------GPPR 327

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1007362507 171 SGdgfePQMVKsPSFGGASEASARTPPQVVQPSPS 205
Cdd:PHA03264  328 PA----PDADR-PEGWPSLEAITFPPPTPATPAVP 357
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 553-651 4.33e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 4.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 553 NCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIMVLMNSAFLHLG 632
Cdd:COG5010    62 NLYNKLGDFEESLALLEQALQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKA------LALSPDNPNAYSNLAALLLS 134

                          90
                  ....*....|....*....
gi 1007362507 633 QNNFAEAHRFFTEILRMDP 651
Cdd:COG5010   135 LGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 542-608 4.39e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 4.39e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1007362507 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 608
Cdd:COG1729    27 PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkaPDALLKLGLSYLELGDYDKARATLEELIK 95
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-202 7.12e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 7.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   4 AGGGEETPAP-------EAPHPPQLAPPEEQGllfqeetidlggdefGSEENETASEGSSPLADKLNEHMMESVLISDSP 76
Cdd:PRK07764  594 AAGGEGPPAPassgppeEAARPAAPAAPAAPA---------------APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVA 658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  77 NSEGDAGDLGRVRDEAEPGGEGD-PGPEPAGTPSPSGEADGDCAPEDAA-------PSSGGAPR---QDAAREVPGSEAA 145
Cdd:PRK07764  659 VPDASDGGDGWPAKAGGAAPAAPpPAPAPAAPAAPAGAAPAQPAPAPAAtppagqaDDPAAQPPqaaQGASAPSPAADDP 738

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1007362507 146 RPEQEPPVAEPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQP 202
Cdd:PRK07764  739 VPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 74-208 7.49e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 7.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  74 DSPNSEGDAGDLGRVRDEAEPGG--EGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEP 151
Cdd:PRK07764  630 AGAAAAPAEASAAPAPGVAAPEHhpKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1007362507 152 PVA-------EPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLST 208
Cdd:PRK07764  710 PAGqaddpaaQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 549-608 9.53e-05

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.27  E-value: 9.53e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1007362507 549 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 608
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 530-720 1.16e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 530 QEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVEKV 609
Cdd:COG3914    63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD-NAEALFNLGNLLLALGRLEEALAALRRALAL 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 610 TQKLdglqgkIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH-Y 688
Cdd:COG3914   142 NPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNaD 215

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1007362507 689 LHESVLFnltTMYELESSRSMQKKQALLEAVA 720
Cdd:COG3914   216 AHSNLLF---ALRQACDWEVYDRFEELLAALA 244
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 89-205 1.76e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  89 RDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAP 168
Cdd:PRK07764  377 RLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1007362507 169 PASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPS 205
Cdd:PRK07764  457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
PHA03379 PHA03379
EBNA-3A; Provisional
 1-204 2.59e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 44.66  E-value: 2.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   1 MEDAGGGEET----------PAPEAPHPPQLAPPEEqgLLFQEETIDLGGDEFGSEENETASEGSSPLADklnEHMMESV 70
Cdd:PHA03379  391 LMRAGKLTERarealekasePTYGTPRPPVEKPRPE--VPQSLETATSHGSAQVPEPPPVHDLEPGPLHD---QHSMAPC 465

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  71 LISDSPNS---EGDAGDLgrvrdeaEPGGEGDPGPEPAGTPSPSGEAdgdCAPEDAAPSsggaprqdaarEVPGSEAARP 147
Cdd:PHA03379  466 PVAQLPPGplqDLEPGDQ-------LPGVVQDGRPACAPVPAPAGPI---VRPWEASLS-----------QVPGVAFAPV 524

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1007362507 148 EQEPPVAEPVPVCTIFSQR----APPA---SGDGfEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PHA03379  525 MPQPMPVEPVPVPTVALERpvcpAPPLiamQGPG-ETSGIVRVRERWRPAPWTPNPPRSPSQMS 587
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 555-651 2.61e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 555 LLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEKV---TQKLDglqgkiMVLMNSAFL 629
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSPlaPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAP------DALLKLGLS 76

                          90       100
                  ....*....|....*....|..
gi 1007362507 630 HLGQNNFAEAHRFFTEILRMDP 651
Cdd:COG1729    77 YLELGDYDKARATLEELIKKYP 98
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
554-652 2.75e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.54  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 554 CLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvTQKLDglQGKIMVLMNSAFLHLGQ 633
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDN-ADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAELLLEL 72

                          90
                  ....*....|....*....
gi 1007362507 634 NNFAEAHRFFTEILRMDPR 652
Cdd:COG3063    73 GDYDEALAYLERALELDPS 91
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 91-206 3.31e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  91 EAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAPPA 170
Cdd:PRK07764  393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1007362507 171 SGDGfEPQMVKSPSFGGASEASARTPPQVVQPSPSL 206
Cdd:PRK07764  473 APEP-TAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03247 PHA03247
large tegument protein UL36; Provisional
 10-221 5.16e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 5.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   10 TPAPEAPHPPQLAPPEEQGLLFQEEtidlGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDS---------PNSEG 80
Cdd:PHA03247  2615 SPLPPDTHAPDPPPPSPSPAANEPD----PHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAssppqrprrRAARP 2690

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   81 DAGDLGRVRDEAEPGGEGDPGPEPA--GTPSPSGEADGDCAPEdAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVP 158
Cdd:PHA03247  2691 TVGSLTSLADPPPPPPTPEPAPHALvsATPLPPGPAAARQASP-ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1007362507  159 vctifsqrAPPASGDGFEPQMVKSPSFGGASEASArTPPQVVQPSPSLSTFFGDTAASHSLAS 221
Cdd:PHA03247  2770 --------APPAAPAAGPPRRLTRPAVASLSESRE-SLPSPWDPADPPAAVLAPAAALPPAAS 2823
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
591-688 5.18e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 5.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 591 LQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNSAFLHLGQNNFAEAHRFfTEILRMDPRNAVANNNAAVCLLYLGKL 670
Cdd:COG3063     3 LKLGDLEEAEEYYEKA----LELDP--DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDY 75

                          90
                  ....*....|....*...
gi 1007362507 671 KDSLRQLEAMVQQDPRHY 688
Cdd:COG3063    76 DEALAYLERALELDPSAL 93
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 555-735 6.09e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 6.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 555 LLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDV-EKVTQKLDGLQGKIMVlmnsaflHLGQ 633
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPN-NIAVLLALATILIEAGEFEEAEKHADALlKKAPNSPLAHYLKALV-------DFQK 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 634 NNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRhyLHESVLfnLTTMYELESSRSMQkKQ 713
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN--SHQARR--LLASIQLRLGRVDE-AI 349

                         170       180
                  ....*....|....*....|..
gi 1007362507 714 ALLEAVAGKegDSFNTQCLKLA 735
Cdd:TIGR02917 350 ATLSPALGL--DPDDPAALSLL 369
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
5-205 1.01e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   5 GGGEETPAPEAPHPPQLAPPEEQGllfqeetidlggdEFGSEENETASEGSSPLADKLNEhMMESVLISDSPNSEGDAGd 84
Cdd:PRK12323  368 SGGGAGPATAAAAPVAQPAPAAAA-------------PAAAAPAPAAPPAAPAAAPAAAA-AARAVAAAPARRSPAPEA- 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  85 LGRVRDEAEPGGEGDPGPEPAGTPSPSGeadgdcAPEDAAPSSGGAPRQDA---AREVPGSEAARPEQEPPVAEPVPVCt 161
Cdd:PRK12323  433 LAAARQASARGPGGAPAPAPAPAAAPAA------AARPAAAGPRPVAAAAAaapARAAPAAAPAPADDDPPPWEELPPE- 505

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1007362507 162 iFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPS 205
Cdd:PRK12323  506 -FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-264 1.15e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003  359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003  435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                         170
                  ....*....|....*.
gi 1007362507 249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003  511 RAPAAASREDAPAAAA 526
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 12-217 1.59e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 1.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   12 APEAPHPPQLAPPEEQGLLFQEETIDLGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDSPNSEGDAGDLGRVRDE 91
Cdd:PHA03307    18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAP 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   92 AEPGGEGDPGPEPAGTPSPsgeadgdcaPEDAAPSSGGAPRQDAARevpgSEAARPEQEPPVAepvpvctifSQRAPPAS 171
Cdd:PHA03307    98 ASPAREGSPTPPGPSSPDP---------PPPTPPPASPPPSPAPDL----SEMLRPVGSPGPP---------PAASPPAA 155

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1007362507  172 GDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLSTFFGDTAASH 217
Cdd:PHA03307   156 GASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA 201
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 73-204 1.87e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  73 SDSPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSG----GAPRQDAAREVPGSEAARPE 148
Cdd:PRK07764  641 AAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAapaqPAPAPAATPPAGQADDPAAQ 720

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1007362507 149 QEPPVAEPVPVCTiFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PRK07764  721 PPQAAQGASAPSP-AADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 3-330 1.87e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507    3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEETIDLGGDEFGSEENETASEGSSPLAdklnehmmesvliSDSPNSEGDA 82
Cdd:PHA03307   107 TPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA-------------SDAASSRQAA 173

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   83 GDLGRVRDEAEPGGegdPGPEPAGTPSPSGEADGDCAPED-----AAPSSGGAPRQDAAREVPG-------SEAARPEQE 150
Cdd:PHA03307   174 LPLSSPEETARAPS---SPPAEPPPSTPPAAASPRPPRRSspisaSASSPAPAPGRSAADDAGAsssdsssSESSGCGWG 250

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  151 PPVAEPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPqvvqPSPSLSTFFGDTAASHSLASDFFDSFTTS 230
Cdd:PHA03307   251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS----PSPSSPGSGPAPSSPRASSSSSSSRESSS 326

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  231 AFISVSNPGAGSPAPASPPPLAVPGTEGRPEPVAMRGPQAAAPPASPEPFAhiQAVFAGSDDPFATALSMSEMDRRNDAw 310
Cdd:PHA03307   327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS--PAASAGRPTRRRARAAVAGRARRRDA- 403

                          330       340
                   ....*....|....*....|
gi 1007362507  311 lPGEATRGVLRAVATQQRGA 330
Cdd:PHA03307   404 -TGRFPAGRPRPSPLDAGAA 422
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 92-209 1.95e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 41.09  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  92 AEPGGEGDPGPEPAGtpspSGEADGDCAPedAAPSSggAPR-------QDAAREVPGSEAARPEQEPPVAEPVPVCTIF- 163
Cdd:PHA03291  164 AAFPAEGTLAAPPLG----EGSADGSCDP--ALPLS--APRlgpadvfVPATPRPTPRTTASPETTPTPSTTTSPPSTTi 235

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1007362507 164 -----SQRAPPASGDGFEPQMVKSPSFGGaseasARTPPQVVQPSPSLSTF 209
Cdd:PHA03291  236 papstTIAAPQAGTTPEAEGTPAPPTPGG-----GEAPPANATPAPEASRY 281
PHA03378 PHA03378
EBNA-3B; Provisional
 82-204 2.43e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.21  E-value: 2.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  82 AGDLGRVRdeaEPGGEGDPGPEPAGTPS---PSGEADGDCAPEDAAPssgGAPRQDAAREVPGSEAARPE-----QEPPV 153
Cdd:PHA03378  728 AAAPGRAR---PPAAAPGRARPPAAAPGrarPPAAAPGRARPPAAAP---GAPTPQPPPQAPPAPQQRPRgaptpQPPPQ 801

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 154 AEPVPVctIFSQRAPPASgDGFEPQMVKSPSFGGASE---------ASARTPPQVVQPSP 204
Cdd:PHA03378  802 AGPTSM--QLMPRAAPGQ-QGPTKQILRQLLTGGVKRgrpslkkpaALERQAAAGPTPSP 858
PHA03169 PHA03169
hypothetical protein; Provisional
 75-151 2.52e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 41.11  E-value: 2.52e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1007362507  75 SPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEdaAPSSGGAPRQDAAREVPGSEAARPEQEP 151
Cdd:PHA03169   83 EKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE--SPASHSPPPSPPSHPGPHEPAPPESHNP 157
PRK12495 PRK12495
hypothetical protein; Provisional
 75-194 2.66e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 39.85  E-value: 2.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  75 SPNSEGDAGDlGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAA---RPEQEP 151
Cdd:PRK12495   66 QPVTEDGAAG-DDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAardGPTPDP 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1007362507 152 PVAEPVPVCTIFSQRAPPASGDGFEPQmvKSPSFGGASEASAR 194
Cdd:PRK12495  145 TAQPATPDERRSPRQRPPVSGEPPTPS--TPDAHVAGTLQAAR 185
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 84-174 2.80e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.08  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  84 DLGRVRDEAEPGGEGDPgPEPAGTPSPSGEAdgdcAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIF 163
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSP-DVKKKAPEPDLPQ----PDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSP 446

                          90
                  ....*....|.
gi 1007362507 164 SQRAPPASGDG 174
Cdd:PRK14954  447 QASAPRNVASG 457
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 564-685 3.25e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 3.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 564 AVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNSAFLHLGQNNFAEAHRFF 643
Cdd:COG4235     2 AIARLRQALAANPND-AEGWLLLGRAYLRLGRYDEALAAYEKA----LRLDP--DNADALLDLAEALLAAGDTEEAEELL 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1007362507 644 TEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDP 685
Cdd:COG4235    75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 100-212 4.78e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 4.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 100 PGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAPPASGDGFEPQM 179
Cdd:PRK14951  383 RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAI 462

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1007362507 180 VKSPSFGGASEASARTPPQVVQPSPSLSTFFGD 212
Cdd:PRK14951  463 PVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495
PHA03169 PHA03169
hypothetical protein; Provisional
 2-132 5.03e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 5.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   2 EDAGGGEETPAPEAPHPPQLAPPEEQGllfqeETIDlGGDEFGSEENETASEGSSPladklnehmmesvlisdspnSEGD 81
Cdd:PHA03169  176 EEPEPPTSEPEPDSPGPPQSETPTSSP-----PPQS-PPDEPGEPQSPTPQQAPSP--------------------NTQQ 229

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1007362507  82 AGDlgrvrDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAapssGGAPR 132
Cdd:PHA03169  230 AVE-----HEDEPTEPEREGPPFPGHRSHSYTVVGWKPSTRP----GGVPK 271
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
545-613 6.06e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 6.06e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1007362507 545 GRVMYSMANCLLLMKDYVLAvEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKL 613
Cdd:COG3063    26 ADALNNLGLLLLEQGRYDEA-IALEKALKLDPNN-AEALLNLAELLLELGDYDEALAYLERALELDPSA 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
572-702 6.50e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.83  E-value: 6.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507 572 IKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 651
Cdd:COG0457     1 LELDPDD-AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD------AEALYNLGLAYLRLGRYEEALADYEQALELDP 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1007362507 652 RNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 702
Cdd:COG0457    74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA---EALYNLGLALL 121
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 90-204 7.32e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 7.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507  90 DEAEPGGEGDPGPEPAGTPSPSGE-ADGDCAPEDAAPSSGGAPRQdaarevPGSEAARPEQEPPVAEPVPvctifSQRAP 168
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARpAAPAAPAAPAAPAPAGAAAA------PAEASAAPAPGVAAPEHHP-----KHVAV 659

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1007362507 169 PASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PRK07764  660 PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695
PHA03247 PHA03247
large tegument protein UL36; Provisional
 94-229 9.34e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 9.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1007362507   94 PGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPvctifsqRAPPASGD 173
Cdd:PHA03247  2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR-------RLTRPAVA 2789

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1007362507  174 GFEPQMVKSPSFGGASEASARTP------PQVVQPSPSLSTFFGDTAASHSLASDFFDSFTT 229
Cdd:PHA03247  2790 SLSESRESLPSPWDPADPPAAVLapaaalPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH