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Conserved domains on  [gi|1007386457|ref|NP_001308177|]
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WW domain binding protein VOPP1 isoform 10 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13729 super family cl42933
conjugal transfer pilus assembly protein TraB; Provisional
 42-100 3.92e-03

conjugal transfer pilus assembly protein TraB; Provisional


The actual alignment was detected with superfamily member PRK13729:

Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 35.18  E-value: 3.92e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1007386457  42 PNPGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFqvppnSPQGSVACPPPPAY----CNTPPP 100
Cdd:PRK13729  125 ANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSF-----PPQGSVAVPPPTAFypgnGVTPPP 182
 
Name Accession Description Interval E-value
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 42-100 3.92e-03

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 35.18  E-value: 3.92e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1007386457  42 PNPGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFqvppnSPQGSVACPPPPAY----CNTPPP 100
Cdd:PRK13729  125 ANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSF-----PPQGSVAVPPPTAFypgnGVTPPP 182
 
Name Accession Description Interval E-value
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 42-100 3.92e-03

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 35.18  E-value: 3.92e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1007386457  42 PNPGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFqvppnSPQGSVACPPPPAY----CNTPPP 100
Cdd:PRK13729  125 ANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSF-----PPQGSVAVPPPTAFypgnGVTPPP 182
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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