THUMP domain-containing protein 2 isoform 5 [Homo sapiens]
class I SAM-dependent methyltransferase; SAM-dependent methyltransferase( domain architecture ID 1915406)
class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor; S-adenosyl-L-methionine (SAM)-dependent methyltransferase similar to the mammalian protein RRNAD1, which is associated with periodontal disease
List of domain hits
Name | Accession | Description | Interval | E-value | |||
AdoMet_MTases super family | cl17173 | S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
274-323 | 3.73e-11 | |||
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). The actual alignment was detected with superfamily member pfam01170: Pssm-ID: 473071 [Multi-domain] Cd Length: 184 Bit Score: 61.22 E-value: 3.73e-11
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RlmL super family | cl43029 | 23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA ... |
204-317 | 5.03e-10 | |||
23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA G2445 N2-methylase RlmL is part of the Pathway/BioSystem: 23S rRNA modification The actual alignment was detected with superfamily member COG0116: Pssm-ID: 439886 [Multi-domain] Cd Length: 369 Bit Score: 60.11 E-value: 5.03e-10
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Name | Accession | Description | Interval | E-value | |||
UPF0020 | pfam01170 | Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated ... |
274-323 | 3.73e-11 | |||
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Pssm-ID: 395932 [Multi-domain] Cd Length: 184 Bit Score: 61.22 E-value: 3.73e-11
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RlmL | COG0116 | 23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA ... |
204-317 | 5.03e-10 | |||
23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA G2445 N2-methylase RlmL is part of the Pathway/BioSystem: 23S rRNA modification Pssm-ID: 439886 [Multi-domain] Cd Length: 369 Bit Score: 60.11 E-value: 5.03e-10
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Trm11 | COG1041 | tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
286-317 | 8.96e-09 | |||
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 54.18 E-value: 8.96e-09
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THUMP | smart00981 | The THUMP domain is named after after thiouridine synthases, methylases and PSUSs; The THUMP ... |
186-264 | 1.47e-08 | |||
The THUMP domain is named after after thiouridine synthases, methylases and PSUSs; The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterised RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Pssm-ID: 214952 [Multi-domain] Cd Length: 83 Bit Score: 51.12 E-value: 1.47e-08
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Trm14_Arch | NF040721 | tRNA (guanine(6)-N2)-methyltransferase; |
221-317 | 8.19e-08 | |||
tRNA (guanine(6)-N2)-methyltransferase; Pssm-ID: 468685 [Multi-domain] Cd Length: 370 Bit Score: 53.14 E-value: 8.19e-08
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TIGR01177 | TIGR01177 | putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is ... |
228-317 | 1.66e-07 | |||
putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is found exclusively in the Archaea. [Hypothetical proteins, Conserved] Pssm-ID: 273486 [Multi-domain] Cd Length: 329 Bit Score: 52.05 E-value: 1.66e-07
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THUMP_AdoMetMT | cd11715 | THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Proteins of ... |
204-264 | 7.67e-07 | |||
THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Proteins of this family contain an N-terminal THUMP domain and a C-terminal S-adenosylmethionine-dependent methyltransferase domain. Members have been implicated in the modification of 23S RNA m2G2445, a highly conserved modification in bacteria and in the m2G6 modification of tRNA. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Pssm-ID: 212584 Cd Length: 152 Bit Score: 47.96 E-value: 7.67e-07
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rlmL | PRK11783 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2)) ... |
243-317 | 6.59e-06 | |||
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL; Pssm-ID: 236981 [Multi-domain] Cd Length: 702 Bit Score: 47.87 E-value: 6.59e-06
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THUMP | pfam02926 | THUMP domain; The THUMP domain is named after after thiouridine synthases, methylases and ... |
206-255 | 6.91e-05 | |||
THUMP domain; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterized RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Pssm-ID: 460749 Cd Length: 143 Bit Score: 42.43 E-value: 6.91e-05
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Name | Accession | Description | Interval | E-value | |||
UPF0020 | pfam01170 | Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated ... |
274-323 | 3.73e-11 | |||
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Pssm-ID: 395932 [Multi-domain] Cd Length: 184 Bit Score: 61.22 E-value: 3.73e-11
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RlmL | COG0116 | 23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA ... |
204-317 | 5.03e-10 | |||
23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA G2445 N2-methylase RlmL is part of the Pathway/BioSystem: 23S rRNA modification Pssm-ID: 439886 [Multi-domain] Cd Length: 369 Bit Score: 60.11 E-value: 5.03e-10
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Trm11 | COG1041 | tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
286-317 | 8.96e-09 | |||
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 54.18 E-value: 8.96e-09
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THUMP | smart00981 | The THUMP domain is named after after thiouridine synthases, methylases and PSUSs; The THUMP ... |
186-264 | 1.47e-08 | |||
The THUMP domain is named after after thiouridine synthases, methylases and PSUSs; The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterised RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Pssm-ID: 214952 [Multi-domain] Cd Length: 83 Bit Score: 51.12 E-value: 1.47e-08
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Trm14_Arch | NF040721 | tRNA (guanine(6)-N2)-methyltransferase; |
221-317 | 8.19e-08 | |||
tRNA (guanine(6)-N2)-methyltransferase; Pssm-ID: 468685 [Multi-domain] Cd Length: 370 Bit Score: 53.14 E-value: 8.19e-08
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TIGR01177 | TIGR01177 | putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is ... |
228-317 | 1.66e-07 | |||
putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is found exclusively in the Archaea. [Hypothetical proteins, Conserved] Pssm-ID: 273486 [Multi-domain] Cd Length: 329 Bit Score: 52.05 E-value: 1.66e-07
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THUMP_AdoMetMT | cd11715 | THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Proteins of ... |
204-264 | 7.67e-07 | |||
THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Proteins of this family contain an N-terminal THUMP domain and a C-terminal S-adenosylmethionine-dependent methyltransferase domain. Members have been implicated in the modification of 23S RNA m2G2445, a highly conserved modification in bacteria and in the m2G6 modification of tRNA. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Pssm-ID: 212584 Cd Length: 152 Bit Score: 47.96 E-value: 7.67e-07
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rlmL | PRK11783 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2)) ... |
243-317 | 6.59e-06 | |||
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL; Pssm-ID: 236981 [Multi-domain] Cd Length: 702 Bit Score: 47.87 E-value: 6.59e-06
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THUMP | pfam02926 | THUMP domain; The THUMP domain is named after after thiouridine synthases, methylases and ... |
206-255 | 6.91e-05 | |||
THUMP domain; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterized RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Pssm-ID: 460749 Cd Length: 143 Bit Score: 42.43 E-value: 6.91e-05
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THUMP_ThiI | cd11716 | THUMP domain of thiamine biosynthesis protein ThiI; ThiI is an enzyme responsible for the ... |
191-253 | 1.24e-03 | |||
THUMP domain of thiamine biosynthesis protein ThiI; ThiI is an enzyme responsible for the formation of the modified base S(4)U (4-thiouridine) found at position 8 in some prokaryotic tRNAs. This modification acts as a signal for UV exposure, triggering a response that provides protection against its damaging effects. ThiI consists of an N-terminal THUMP domain, followed by an NFLD domain, and a C-terminal PP-loop pyrophosphatase domain. The N-terminal THUMP domain has been implicated in the recognition of the acceptor-stem region. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Pssm-ID: 212585 Cd Length: 166 Bit Score: 38.97 E-value: 1.24e-03
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Blast search parameters | ||||
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