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Conserved domains on  [gi|1012306341|ref|NP_001308689|]
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CDAN1-interacting nuclease 1 isoform 6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPD super family cl20727
Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of ...
 132-203 1.84e-35

Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of unknown function. A few members have an associated zinc-finger domain. All members carry a highly conserved TPD sequence-motif.


The actual alignment was detected with superfamily member pfam14811:

Pssm-ID: 464328  Cd Length: 138  Bit Score: 121.91  E-value: 1.84e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012306341 132 PDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPV 203
Cdd:pfam14811   1 EDKRLAAEVRQCIEYDDFYSPIADAIRHSIGQEYEDLLEKWLKERGIPFQTEDDLRAKGYDKTPDIKLEVPI 72
 
Name Accession Description Interval E-value
TPD pfam14811
Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of ...
 132-203 1.84e-35

Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of unknown function. A few members have an associated zinc-finger domain. All members carry a highly conserved TPD sequence-motif.


Pssm-ID: 464328  Cd Length: 138  Bit Score: 121.91  E-value: 1.84e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012306341 132 PDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPV 203
Cdd:pfam14811   1 EDKRLAAEVRQCIEYDDFYSPIADAIRHSIGQEYEDLLEKWLKERGIPFQTEDDLRAKGYDKTPDIKLEVPI 72
 
Name Accession Description Interval E-value
TPD pfam14811
Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of ...
 132-203 1.84e-35

Protein of unknown function TPD sequence-motif; This is a family of eukaryotic proteins of unknown function. A few members have an associated zinc-finger domain. All members carry a highly conserved TPD sequence-motif.


Pssm-ID: 464328  Cd Length: 138  Bit Score: 121.91  E-value: 1.84e-35
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1012306341 132 PDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPV 203
Cdd:pfam14811   1 EDKRLAAEVRQCIEYDDFYSPIADAIRHSIGQEYEDLLEKWLKERGIPFQTEDDLRAKGYDKTPDIKLEVPI 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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