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Conserved domains on  [gi|1013372384|ref|NP_001308899|]
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small ribosomal subunit protein uS11m isoform c [Homo sapiens]

Protein Classification

RpsK family protein( domain architecture ID 10000600)

RpsK family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RpsK COG0100
Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 ...
77-192 9.92e-28

Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439870  Cd Length: 130  Bit Score: 100.97  E-value: 9.92e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  77 KKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPG 156
Cdd:COG0100    14 KKNVPSGIAHIHSTFNNTIVTITDLQGNVIAWSSAGTVGFKGSRKSTPYAAQVAAEKAAKKAMEHGLKEVEVRVKGPGPG 93
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1013372384 157 RLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARK 192
Cdd:COG0100    94 RESAIRALQAAGLEVTSIKDVTPIPHNGCRPPKRRR 129
PRK00934 super family cl46892
ribose-phosphate pyrophosphokinase; Provisional
29-103 4.31e-03

ribose-phosphate pyrophosphokinase; Provisional


The actual alignment was detected with superfamily member PRK02812:

Pssm-ID: 481232 [Multi-domain]  Cd Length: 330  Bit Score: 37.03  E-value: 4.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  29 AGTICTGARQLQDAAAKQKVeqnAAPSHTKFSiyPPipgeeSSLRWAGKKFEE------IPIAhikASHNNTQIQVVSAS 102
Cdd:PRK02812  243 GGTICEGARLLRKEGAKQVY---ACATHAVFS--PP-----AIERLSSGLFEEvivtntIPVP---EERRFPQLKVLSVA 309

                  .
gi 1013372384 103 N 103
Cdd:PRK02812  310 N 310
 
Name Accession Description Interval E-value
RpsK COG0100
Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 ...
77-192 9.92e-28

Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439870  Cd Length: 130  Bit Score: 100.97  E-value: 9.92e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  77 KKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPG 156
Cdd:COG0100    14 KKNVPSGIAHIHSTFNNTIVTITDLQGNVIAWSSAGTVGFKGSRKSTPYAAQVAAEKAAKKAMEHGLKEVEVRVKGPGPG 93
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1013372384 157 RLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARK 192
Cdd:COG0100    94 RESAIRALQAAGLEVTSIKDVTPIPHNGCRPPKRRR 129
PRK05309 PRK05309
30S ribosomal protein S11; Validated
84-192 1.70e-27

30S ribosomal protein S11; Validated


Pssm-ID: 180007  Cd Length: 128  Bit Score: 100.62  E-value: 1.70e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHG 163
Cdd:PRK05309   19 VAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRA 98
                          90       100
                  ....*....|....*....|....*....
gi 1013372384 164 LIMGGLEVISITDNTPIPHNGCRPRKARK 192
Cdd:PRK05309   99 LQAAGLEVTSIKDVTPIPHNGCRPPKRRR 127
uS11_bact TIGR03632
ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal ...
84-189 6.59e-27

ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274689  Cd Length: 108  Bit Score: 98.46  E-value: 6.59e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHG 163
Cdd:TIGR03632   2 IVHIHATFNNTIVTITDPQGNVLSWASAGTSGFKGSRKSTPYAAQMAAEKAAKKAMEMGMKTVDVYVKGPGAGRESAIRA 81
                          90       100
                  ....*....|....*....|....*.
gi 1013372384 164 LIMGGLEVISITDNTPIPHNGCRPRK 189
Cdd:TIGR03632  82 LQAAGLEVTSIKDVTPIPHNGCRPPK 107
Ribosomal_S11 pfam00411
Ribosomal protein S11;
84-191 6.38e-21

Ribosomal protein S11;


Pssm-ID: 306838  Cd Length: 109  Bit Score: 82.89  E-value: 6.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHG 163
Cdd:pfam00411   2 VAHIQASFNNTIITITDITGRETLWKSAGGMGFKGSRKSSPYAAQLAAEDAARAAKDLGIKALEVMVRGPGPGRQAAIRA 81
                          90       100
                  ....*....|....*....|....*...
gi 1013372384 164 LIMGGLEVISITDNTPIPHNGCRPRKAR 191
Cdd:pfam00411  82 LARAGVIIGRIEDVTPMPHNGCRPPKKR 109
PRK02812 PRK02812
ribose-phosphate pyrophosphokinase; Provisional
29-103 4.31e-03

ribose-phosphate pyrophosphokinase; Provisional


Pssm-ID: 235072 [Multi-domain]  Cd Length: 330  Bit Score: 37.03  E-value: 4.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  29 AGTICTGARQLQDAAAKQKVeqnAAPSHTKFSiyPPipgeeSSLRWAGKKFEE------IPIAhikASHNNTQIQVVSAS 102
Cdd:PRK02812  243 GGTICEGARLLRKEGAKQVY---ACATHAVFS--PP-----AIERLSSGLFEEvivtntIPVP---EERRFPQLKVLSVA 309

                  .
gi 1013372384 103 N 103
Cdd:PRK02812  310 N 310
 
Name Accession Description Interval E-value
RpsK COG0100
Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 ...
77-192 9.92e-28

Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439870  Cd Length: 130  Bit Score: 100.97  E-value: 9.92e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  77 KKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPG 156
Cdd:COG0100    14 KKNVPSGIAHIHSTFNNTIVTITDLQGNVIAWSSAGTVGFKGSRKSTPYAAQVAAEKAAKKAMEHGLKEVEVRVKGPGPG 93
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1013372384 157 RLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARK 192
Cdd:COG0100    94 RESAIRALQAAGLEVTSIKDVTPIPHNGCRPPKRRR 129
PRK05309 PRK05309
30S ribosomal protein S11; Validated
84-192 1.70e-27

30S ribosomal protein S11; Validated


Pssm-ID: 180007  Cd Length: 128  Bit Score: 100.62  E-value: 1.70e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHG 163
Cdd:PRK05309   19 VAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRA 98
                          90       100
                  ....*....|....*....|....*....
gi 1013372384 164 LIMGGLEVISITDNTPIPHNGCRPRKARK 192
Cdd:PRK05309   99 LQAAGLEVTSIKDVTPIPHNGCRPPKRRR 127
uS11_bact TIGR03632
ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal ...
84-189 6.59e-27

ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274689  Cd Length: 108  Bit Score: 98.46  E-value: 6.59e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHG 163
Cdd:TIGR03632   2 IVHIHATFNNTIVTITDPQGNVLSWASAGTSGFKGSRKSTPYAAQMAAEKAAKKAMEMGMKTVDVYVKGPGAGRESAIRA 81
                          90       100
                  ....*....|....*....|....*.
gi 1013372384 164 LIMGGLEVISITDNTPIPHNGCRPRK 189
Cdd:TIGR03632  82 LQAAGLEVTSIKDVTPIPHNGCRPPK 107
rps11 CHL00041
ribosomal protein S11
84-185 1.01e-23

ribosomal protein S11


Pssm-ID: 176982  Cd Length: 116  Bit Score: 90.32  E-value: 1.01e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHG 163
Cdd:CHL00041   15 VIHIQASFNNTIVTVTDVRGRVISWSSAGACGFKGARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRA 94
                          90       100
                  ....*....|....*....|..
gi 1013372384 164 LIMGGLEVISITDNTPIPHNGC 185
Cdd:CHL00041   95 IRRSGLKLSSIRDVTPMPHNGC 116
Ribosomal_S11 pfam00411
Ribosomal protein S11;
84-191 6.38e-21

Ribosomal protein S11;


Pssm-ID: 306838  Cd Length: 109  Bit Score: 82.89  E-value: 6.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHG 163
Cdd:pfam00411   2 VAHIQASFNNTIITITDITGRETLWKSAGGMGFKGSRKSSPYAAQLAAEDAARAAKDLGIKALEVMVRGPGPGRQAAIRA 81
                          90       100
                  ....*....|....*....|....*...
gi 1013372384 164 LIMGGLEVISITDNTPIPHNGCRPRKAR 191
Cdd:pfam00411  82 LARAGVIIGRIEDVTPMPHNGCRPPKKR 109
rps11p PRK09607
30S ribosomal protein S11P; Reviewed
68-192 1.82e-11

30S ribosomal protein S11P; Reviewed


Pssm-ID: 236588  Cd Length: 132  Bit Score: 58.86  E-value: 1.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  68 EESSLRWAgkkfeeipIAHIKASHNNTQIQVVSASN-EPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGV--I 144
Cdd:PRK09607    3 SMRKEKWG--------IAHIYASFNNTIITITDLTGaETIAKSSGGMVVKADRDESSPYAAMQAAEKAAEDAKEKGItgV 74
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1013372384 145 HIRVVVKG------LGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARK 192
Cdd:PRK09607   75 HIKVRAPGgngqksPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGTRPPGGRR 128
arch_S11P TIGR03628
ribosomal protein uS11P, archaeal form; This model describes exclusively the archaeal ...
84-187 9.48e-10

ribosomal protein uS11P, archaeal form; This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274686  Cd Length: 117  Bit Score: 54.02  E-value: 9.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASN-EPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGV--IHIRVVVKG------LG 154
Cdd:TIGR03628   4 IAHIYSSFNNTIITITDITGaETIARVSGGMVVKADRDEPSPYAAMQAARRAAEKALERGItgVHIKVRAPGgngsktPG 83
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1013372384 155 PGRLSAMHGLIMGGLEVISITDNTPIPHNGCRP 187
Cdd:TIGR03628  84 PGAQAAIRALARAGLKIGRIEDVTPIPHDGTRP 116
PTZ00129 PTZ00129
40S ribosomal protein S14; Provisional
84-192 7.73e-04

40S ribosomal protein S14; Provisional


Pssm-ID: 185465  Cd Length: 149  Bit Score: 38.30  E-value: 7.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  84 IAHIKASHNNTQIQVVSASN-EPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGV--IHIRVVVKG------LG 154
Cdd:PTZ00129   30 VAHIFASFNDTFIHVTDLSGrETLVRVTGGMKVKADRDESSPYAAMMAAQDVAARCKELGInaLHIKLRATGgvrtktPG 109
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1013372384 155 PGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARK 192
Cdd:PTZ00129  110 PGAQAALRALARAGLKIGRIEDVTPIPTDSTRRKGGRR 147
PRK02812 PRK02812
ribose-phosphate pyrophosphokinase; Provisional
29-103 4.31e-03

ribose-phosphate pyrophosphokinase; Provisional


Pssm-ID: 235072 [Multi-domain]  Cd Length: 330  Bit Score: 37.03  E-value: 4.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1013372384  29 AGTICTGARQLQDAAAKQKVeqnAAPSHTKFSiyPPipgeeSSLRWAGKKFEE------IPIAhikASHNNTQIQVVSAS 102
Cdd:PRK02812  243 GGTICEGARLLRKEGAKQVY---ACATHAVFS--PP-----AIERLSSGLFEEvivtntIPVP---EERRFPQLKVLSVA 309

                  .
gi 1013372384 103 N 103
Cdd:PRK02812  310 N 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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