|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
270-888 |
1.76e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 270 KVDQSHSEDNTYQSLVEQLDQE-REKRWRAEQAENKLMDYIDELHKHANEKedihslallttDRLKEIIFRERNSKGQLE 348
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQkQILRERLANLERQLEELEAQLEELESKL-----------DELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 349 VMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLiqEVELKASAADREIYLLRTSLHRE 428
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL--EARLERLEDRRERLQQEIEELLK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 429 REQAQQLH----QLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIA 504
Cdd:TIGR02168 429 KLEEAELKelqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 505 LTVEARRFQ------------DVKDGFENvATELAKSKHA------------LIWAQRKENESS------------SLIK 548
Cdd:TIGR02168 509 KALLKNQSGlsgilgvlseliSVDEGYEA-AIEAALGGRLqavvvenlnaakKAIAFLKQNELGrvtflpldsikgTEIQ 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 549 DLTCMVKEQKTKLAEVSKLKQETAANLQNQINTL--EILIEDDKQKSIQIELLKHEKVQLIS---EL-----------AA 612
Cdd:TIGR02168 588 GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNALELAKKLRPGYRIVTldgDLvrpggvitggsAK 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 613 KESLIFGLRTERKVWGHELAQQGSSLA---QNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKD 689
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAeleKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 690 CLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKG 769
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELE----ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 770 ELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNaMEKLHSMDDAFKRQVDAIVEAhQAEIAQLANEKQKCIDSANL 849
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNE-RASLEEALALLRSELEELSE 901
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 1164778521 850 KVHQIEKEMREL---LEETCKNKKTMEAKIKQLAFALNEIQQ 888
Cdd:TIGR02168 902 ELRELESKRSELrreLEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-764 |
3.32e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 424 SLHREREQAQQLHqllALKEQEhrKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRi 503
Cdd:TIGR02168 204 SLERQAEKAERYK---ELKAEL--RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 504 altvearrfqdvkdgfenvatELAKSKHAliwAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLE 583
Cdd:TIGR02168 278 ---------------------ELEEEIEE---LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 584 ILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERkvwgHELAQQGSSLAQNRGKLEAQIESLsreneclrktn 663
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL----EELEEQLETLRSKVAQLELQIASL----------- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 664 esdsdalrikckiiddqTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQldekssQLDEVLEKLERHNERKEKLKQQ 743
Cdd:TIGR02168 399 -----------------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEA------ELKELQAELEELEEELEELQEE 455
|
330 340
....*....|....*....|.
gi 1164778521 744 LKGKEVELEEIRKAYSTLNRK 764
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
367-761 |
2.59e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 367 KAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQA----QQLHQLLA-- 440
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESgnldDQLQKLLAdl 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 441 -LKEQEHRKELETREFFTDADFQ-----DALAKEIAK---EEKKHEQMIKEYQEKIDVLSQQYMDL---ENEFRIALTVE 508
Cdd:pfam15921 387 hKREKELSLEKEQNKRLWDRDTGnsitiDHLRRELDDrnmEVQRLEALLKAMKSECQGQMERQMAAiqgKNESLEKVSSL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 509 ARRFQDVKDGFENVATELAKSKHALIWAQRKenessslIKDLTCMVKEQKTKL----AEVSKLKQETAANLQnQINTLEi 584
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERT-------VSDLTASLQEKERAIeatnAEITKLRSRVDLKLQ-ELQHLK- 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 585 lIEDDKQKSIQIELlkhEKVQLisELAAKESLIFGLRTERKVWGHELAQQG---SSLAQNRGKLEAQIESLSRE------ 655
Cdd:pfam15921 538 -NEGDHLRNVQTEC---EALKL--QMAEKDKVIEILRQQIENMTQLVGQHGrtaGAMQVEKAQLEKEINDRRLElqefki 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 656 -----NECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQldekssqldEVLE-- 728
Cdd:pfam15921 612 lkdkkDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY---------EVLKrn 682
|
410 420 430
....*....|....*....|....*....|....*.
gi 1164778521 729 ---KLERHNERKEKLKQQLKGKEVELEEIRKAYSTL 761
Cdd:pfam15921 683 frnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSM 718
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
379-757 |
5.31e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 5.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 379 LRTLEKTLEkmerqkrqqqaaqirliqevelkasaadreiyllrtSLHREREQAQQLHQLlalkeQEHRKELETREFFTD 458
Cdd:COG1196 195 LGELERQLE------------------------------------PLERQAEKAERYREL-----KEELKELEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 459 ADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYmdleNEFRIALTVEARRFQDVKDGFENVATELAKSKHALIWAQR 538
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAEL----EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 539 KENESSSLIKDLtcmvKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQksiQIELLKHEKVQLISELAAKESLIF 618
Cdd:COG1196 310 RRRELEERLEEL----EEELAELEEELEELEEELEELEEELEEAEEELEEAEA---ELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 619 GLRTERKvwghELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHI 698
Cdd:COG1196 383 ELAEELL----EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1164778521 699 KRLQEKITEiekcTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKA 757
Cdd:COG1196 459 EALLELLAE----LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
592-888 |
1.43e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 592 KSIQIELLKHEKVQLISELAAKESLIFGLRTERKvwghelaqqgsslaqnrgKLEAQIESLSRENECLRKTNESDSDALR 671
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELKEAEEELE------------------ELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 672 IKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVEL 751
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELE----AQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 752 EEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQA 831
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 832 EIA---QLANEKQKCIDSANLKVHQIEKEMRELLEETCKNKKTmEAKIKQLAFALNEIQQ 888
Cdd:TIGR02168 441 ELEeleEELEELQEELERLEEALEELREELEEAEQALDAAERE-LAQLQARLDSLERLQE 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
336-732 |
1.47e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 336 IIFRERNSKgQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAAD 415
Cdd:TIGR02168 672 ILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 416 ReiyllrtsLHREREQAQQLHQLLALKEQEHRKELetrefftdadfqdalaKEIAKEEKKHEQMIKEYQEKIDVLSQQYM 495
Cdd:TIGR02168 751 Q--------LSKELTELEAEIEELEERLEEAEEEL----------------AEAEAEIEELEAQIEQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 496 DLENEfriaLTVEARRFQDVKDGFENVATELAkskhaliwaqrkenessslikdltcMVKEQKTKLAEVSKLKQETAANL 575
Cdd:TIGR02168 807 ELRAE----LTLLNEEAANLRERLESLERRIA-------------------------ATERRLEDLEEQIEELSEDIESL 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 576 QNQINTLEILIEddkQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWG---HELAQQGSSLAQNRGKLEAQIESL 652
Cdd:TIGR02168 858 AAEIEELEELIE---ELESELEALLNERASLEEALALLRSELEELSEELRELEskrSELRRELEELREKLAQLELRLEGL 934
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 653 -SRENECLRKTNESDSDALrikckiiDDQTETIRKLKDCLQEKDEHIKRLQEKITEI-------------EKCTQEQLDE 718
Cdd:TIGR02168 935 eVRIDNLQERLSEEYSLTL-------EEAEALENKIEDDEEEARRRLKRLENKIKELgpvnlaaieeyeeLKERYDFLTA 1007
|
410
....*....|....
gi 1164778521 719 KSSQLDEVLEKLER 732
Cdd:TIGR02168 1008 QKEDLTEAKETLEE 1021
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
286-755 |
2.16e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 286 EQLDQEREKRWRAEQAE-----NKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVmvhkLQNEIKK 360
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDlherlNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET----LEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 361 LTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQqqaaqirLIQEVELKaSAADREIYLLRTSLHREREQAQQLHQLLA 440
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDD-------LLAEAGLD-DADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 441 LKEQEHRKELET-REfftDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIAltveARRFQDVKDGF 519
Cdd:PRK02224 335 VAAQAHNEEAESlRE---DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL----RERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 520 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEvSKLKQ-----------ETAANLQNQINTLEILIED 588
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA-GKCPEcgqpvegsphvETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 589 DKQKSIQIEllkhEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLE------AQIESLSRENECLRKT 662
Cdd:PRK02224 487 LEEEVEEVE----ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEelreraAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 663 NESDSDALRIKCKIID----------DQTETIRKLKDCLQEKDEHIKRLQEK---ITEIEKCTQEQLDEKSSQ------- 722
Cdd:PRK02224 563 AEEEAEEAREEVAELNsklaelkeriESLERIRTLLAAIADAEDEIERLREKreaLAELNDERRERLAEKRERkreleae 642
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1164778521 723 -------------------LDEVLEKLERHNERKEKLKQQLKGKEVELEEIR 755
Cdd:PRK02224 643 fdearieearedkeraeeyLEQVEEKLDELREERDDLQAEIGAVENELEELE 694
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
408-744 |
2.50e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 408 ELKASAADREIYLLRTSLHREREQAQQLHQLLALKEQEHrkeletrefftdadfqDALAKEIAKEEKKHEQMIKEYQEki 487
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEEL----------------EELTAELQELEEKLEELRLEVSE-- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 488 dvlsqqymdLENEFRIaltvearrfqdvkdgfenvatelakskhaliwAQRKENESSSLIKDLTCMVKEQKTKLAEVSKL 567
Cdd:TIGR02168 279 ---------LEEEIEE--------------------------------LQKELYALANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 568 KQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIF----GLRTERKVWG------HELAQQGSS 637
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEelesRLEELEEQLEtlrskvAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 638 LAQNRGKLEAQIESLSRENECLRKTNESDSDAL-RIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKIteiekctQEQL 716
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEEL-------REEL 470
|
330 340
....*....|....*....|....*...
gi 1164778521 717 DEKSSQLDEVLEKLERHNERKEKLKQQL 744
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
281-888 |
3.67e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 281 YQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQNEIKK 360
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 361 LTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAqirlIQEVELKASAADREIYLLRTSLHREREQAQQLHQLLA 440
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE----LESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 441 LKEQE---HRKELETrefftdadfQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLE-NEFRIALTVEARRFQDVK 516
Cdd:TIGR02168 390 QLELQiasLNNEIER---------LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 517 DGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDDKQKSIQI 596
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 597 ELLKHEKVQ--LISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEaqiESLSRENECLRKTNESDSDALRIK- 673
Cdd:TIGR02168 540 EAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDR---EILKNIEGFLGVAKDLVKFDPKLRk 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 674 --------CKIIDDQTETIRKLKDCLQE-----KDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKL 740
Cdd:TIGR02168 617 alsyllggVLVVDDLDNALELAKKLRPGyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 741 KQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAM---EKLHSMDDA 817
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEeleERLEEAEEE 776
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1164778521 818 FKRQVDAIVEAhQAEIAQLANEKQ---KCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQ 888
Cdd:TIGR02168 777 LAEAEAEIEEL-EAQIEQLKEELKalrEALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
289-885 |
6.30e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 6.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 289 DQEREKRWRAEQAENKLMDYIDELHKHANEKEDihslallttdrLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELmka 368
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEE-----------LEREIEEERKRRDKLTEEYAELKEELEDLRAEL--- 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 369 kdqQEDHLKHLRTLEKTlekmerqkrqqqaaqirliQEVELKASAADREIYLLRTSLHREREQAQQLHQLLA-LKEQEHR 447
Cdd:TIGR02169 374 ---EEVDKEFAETRDEL-------------------KDYREKLEKLKREINELKRELDRLQEELQRLSEELAdLNAAIAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 448 KELETREFftdadfqDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRialtvearrfqDVKDGFENVATELA 527
Cdd:TIGR02169 432 IEAKINEL-------EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD-----------RVEKELSKLQRELA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 528 KSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQ----NQINTleILIEDDKQKSIQIELLKHEK 603
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagNRLNN--VVVEDDAVAKEAIELLKRRK 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 604 ------------------VQLISELAAKESLIFGLRTERK-------VWGHELAQQGSSLAQnrgKLEAQIESLSRENEC 658
Cdd:TIGR02169 572 agratflplnkmrderrdLSILSEDGVIGFAVDLVEFDPKyepafkyVFGDTLVVEDIEAAR---RLMGKYRMVTLEGEL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 659 L------------RKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIK-RLQEKITEIEKCTQEqLDEKSSQLDE 725
Cdd:TIGR02169 649 FeksgamtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEnRLDELSQELSDASRK-IGEIEKEIEQ 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 726 VLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENkekklkaERDKSIELQK 805
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH-------SRIPEIQAEL 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 806 NAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIeKEMRELLEETCKNKKTMEAKIKQLAFALNE 885
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI-KSIEKEIENLNGKKEELEEELEELEAALRD 879
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
277-865 |
6.58e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 6.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 277 EDNTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQN 356
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 357 EIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLH 436
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 437 QLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQyMDLENEFRIALTVEARRFQDVK 516
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA-LLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 517 DGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVS-KLKQETAANLQNQINTLEILIEDDKQKSIQ 595
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGvEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 596 IELLKHEK--------VQLISELAAKESLIFGLRTERKVWGHE-LAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESD 666
Cdd:COG1196 563 IEYLKAAKagratflpLDKIRARAALAAALARGAIGAAVDLVAsDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 667 SDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKG 746
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 747 KEVELEEIRKAYSTLNRKWHDKGELLchletqvkevkekfeNKEKKLKAERDKSIELQKNAMEKLhsmddafKRQVD--- 823
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELL---------------EEEALEELPEPPDLEELERELERL-------EREIEalg 780
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1164778521 824 -----AIVEAHQAE---------IAQLANEKQKcIDSAnlkVHQIEKEMRELLEET 865
Cdd:COG1196 781 pvnllAIEEYEELEerydflseqREDLEEARET-LEEA---IEEIDRETRERFLET 832
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
299-869 |
1.34e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 299 EQAENKLMDY---IDELHKHANEKEDIHS----------------LALLTTDRLKEIIFRERNSKGQlevmvHKLQNEIK 359
Cdd:pfam15921 74 EHIERVLEEYshqVKDLQRRLNESNELHEkqkfylrqsvidlqtkLQEMQMERDAMADIRRRESQSQ-----EDLRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 360 KLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVElkaSAADREIYllrtslhrEREQAQQLH-QL 438
Cdd:pfam15921 149 NTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFE---EASGKKIY--------EHDSMSTMHfRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 439 LALKEQEHRKELETREFFtdadfqdaLAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMD----LENEFRIALTVEARRFQD 514
Cdd:pfam15921 218 LGSAISKILRELDTEISY--------LKGRIFPVEDQLEALKSESQNKIELLLQQHQDrieqLISEHEVEITGLTEKASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 515 VKDGFENVATELAkskhalIWAQRKENESSSLIK---DLTCMVKEQKTKLAEVSKLKQETAANLQNQI------------ 579
Cdd:pfam15921 290 ARSQANSIQSQLE------IIQEQARNQNSMYMRqlsDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanselteart 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 580 -------------NTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSL----AQNR 642
Cdd:pfam15921 364 erdqfsqesgnldDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLkamkSECQ 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 643 GKLEAQIESLSRENECLRKTN------ESDSDALR-------IKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIE 709
Cdd:pfam15921 444 GQMERQMAAIQGKNESLEKVSsltaqlESTKEMLRkvveeltAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 710 KCTQEQLDEkSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLnrkwhdkgellchleTQVKEVKEKFENK 789
Cdd:pfam15921 524 SRVDLKLQE-LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENM---------------TQLVGQHGRTAGA 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 790 EKKLKAERDKSIELQKNAMEKLHSMDDafkrQVDAIVEAHQAEIAQLANEKQKCIDSANLK---VHQIEKEMRELLEE-- 864
Cdd:pfam15921 588 MQVEKAQLEKEINDRRLELQEFKILKD----KKDAKIRELEARVSDLELEKVKLVNAGSERlraVKDIKQERDQLLNEvk 663
|
....*
gi 1164778521 865 TCKNK 869
Cdd:pfam15921 664 TSRNE 668
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
413-755 |
1.45e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 413 AADREIYLLRTSLHREREQAQQLHQLLALKEQEHRKEL-ETREFFTD--------ADFQDALAKE---IAKEEKKHEQMI 480
Cdd:pfam07888 52 AANRQREKEKERYKRDREQWERQRRELESRVAELKEELrQSREKHEEleekykelSASSEELSEEkdaLLAQRAAHEARI 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 481 KEYQEKIDVLSQQYMDLENEFRialtveaRRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLtcmvKEQKTK 560
Cdd:pfam07888 132 RELEEDIKTLTQRVLERETELE-------RMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEF----QELRNS 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 561 LAEvsklKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGH----------- 629
Cdd:pfam07888 201 LAQ----RDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAqrdrtqaelhq 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 630 ---ELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDalrikckiiddqteTIRKLKDCLQEKDEhikRLQEKIT 706
Cdd:pfam07888 277 arlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKD--------------RIEKLSAELQRLEE---RLQEERM 339
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1164778521 707 EIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIR 755
Cdd:pfam07888 340 EREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQ 388
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
467-878 |
1.68e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 467 KEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEfriaLTVEARRFQDVKDGFENVATELAKSKHALIwaqRKENESSSL 546
Cdd:TIGR04523 57 KNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDK----LKKNKDKINKLNSDLSKINSEIKNDKEQKN---KLEVELNKL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 547 IKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDdkqksiqielLKHEKVQLISELAAKESLIFGLRTERKV 626
Cdd:TIGR04523 130 EKQKKENKKNIDKFLTEIKKKEKE-LEKLNNKYNDLKKQKEE----------LENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 627 WGHELAQQGSSLAQNRgKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDdqtETIRKLKDCLQEKDEHIKRLQEKIT 706
Cdd:TIGR04523 199 LELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS---NTQTQLNQLKDEQNKIKKQLSEKQK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 707 EIEKcTQEQLDEKSSQLDEVLEKLERHNERKE-----KLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKE 781
Cdd:TIGR04523 275 ELEQ-NNKKIKELEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 782 VKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDaiVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMREL 861
Cdd:TIGR04523 354 SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIND--LESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERL 431
|
410
....*....|....*..
gi 1164778521 862 LEETCKNKKTMEAKIKQ 878
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQ 448
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
285-890 |
1.87e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 285 VEQLDQEREK--RWRAEQAENKLMD---YIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEvmvhKLQNEIK 359
Cdd:COG1196 202 LEPLERQAEKaeRYRELKEELKELEaelLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE----ELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 360 KLTVELmkaKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLHQLL 439
Cdd:COG1196 278 ELELEL---EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 440 ALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVEARRFQDVKDGF 519
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 520 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQEtAANLQNQINTLEILIEDDKQKSIQIELL 599
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE-LAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 600 KHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENEcLRKTNESdsdalrikckiidd 679
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA-GRATFLP-------------- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 680 qtetIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYS 759
Cdd:COG1196 579 ----LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 760 TLNRKwhdkgellcHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANE 839
Cdd:COG1196 655 GGSAG---------GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1164778521 840 KQKCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM 890
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
285-767 |
1.90e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 285 VEQLDQEREKRWRAEQAENKLmDYIDELHKHANEKEDIHSLALLTT--DRLKEIIFRERNSKGQLEVMVHKLQNEIKKLT 362
Cdd:COG4913 251 IELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLELLEAelEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 363 VELMKAKDQQEDHLKH-LRTLEKTLEKMERQKRQQQAAQIRLiqEVELKASAAD-----REIYLLRTSLHREREQAQQLH 436
Cdd:COG4913 330 AQIRGNGGDRLEQLEReIERLERELEERERRRARLEALLAAL--GLPLPASAEEfaalrAEAAALLEALEEELEALEEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 437 QLLALKEQEHRKELetrefftdadfqDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQ-------------YMDLENE--- 500
Cdd:COG4913 408 AEAEAALRDLRREL------------RELEAEIASLERRKSNIPARLLALRDALAEAlgldeaelpfvgeLIEVRPEeer 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 501 -----------FRIALTVEARRFQDVKDGFENVATELA----KSKHALIWAQRKENESSSLIKDLTcmVKEQ------KT 559
Cdd:COG4913 476 wrgaiervlggFALTLLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKLD--FKPHpfrawlEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 560 KLAEVSKLKQ-ETAANLQN---------QINTLEILIEDDKQKSI------------QIELLKHEKVQLISELAAKESLI 617
Cdd:COG4913 554 ELGRRFDYVCvDSPEELRRhpraitragQVKGNGTRHEKDDRRRIrsryvlgfdnraKLAALEAELAELEEELAEAEERL 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 618 FGLRTERKvwghELAQQGSSLAQ---------NRGKLEAQIESLSRENECLRKTN-------------ESDSDALRikcK 675
Cdd:COG4913 634 EALEAELD----ALQERREALQRlaeyswdeiDVASAEREIAELEAELERLDASSddlaaleeqleelEAELEELE---E 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 676 IIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKC----TQEQLDEKSSQL--DEVLEKLERH-NERKEKLKQQLKGKE 748
Cdd:COG4913 707 ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarleLRALLEERFAAAlgDAVERELRENlEERIDALRARLNRAE 786
|
570
....*....|....*....
gi 1164778521 749 VELEEIRKAYstlNRKWHD 767
Cdd:COG4913 787 EELERAMRAF---NREWPA 802
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
644-862 |
4.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 644 KLEAQIESLSRenecLRKTNEsDSDALRIKCKIIDD---------QTETIRKLKDCLQEKDEHIKRLQEKITEIEkctqE 714
Cdd:COG4913 246 DAREQIELLEP----IRELAE-RYAAARERLAELEYlraalrlwfAQRRLELLEAELEELRAELARLEAELERLE----A 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 715 QLDEKSSQLDEVLEKLERH-NERKEKLKQQLKGKEVELEEIRKAYSTLNrkwhdkgELLCHLETQVKEVKEKFENKEKKL 793
Cdd:COG4913 317 RLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE-------ALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1164778521 794 KAERDKSIELQKNAMEKLHSMDDAFKRQVDAIvEAHQAEIAQLANeKQKCIDSanlKVHQIEKEMRELL 862
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDLRREL-RELEAEIASLER-RKSNIPA---RLLALRDALAEAL 453
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
555-757 |
5.13e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 555 KEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQ 634
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 635 GSSLaqnrGKLEAQIESlsreneclrktnESDSDAL-RIK--CKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKC 711
Cdd:COG3883 99 GGSV----SYLDVLLGS------------ESFSDFLdRLSalSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1164778521 712 TQEQLDEKS---SQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKA 757
Cdd:COG3883 163 KAELEAAKAeleAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
562-764 |
7.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 562 AEVSKLKQETAANLQNQINTLEILIEDDKQksiQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQN 641
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKK---EEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 642 RGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKcTQEQLDEKSS 721
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA-LRAELEAERA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1164778521 722 QLDEVLEKLErhnERKEKLKQQLKGKEVELEEIRKAYSTLNRK 764
Cdd:COG4942 175 ELEALLAELE---EERAALEALKAERQKLLARLEKELAELAAE 214
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-890 |
1.29e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 352 HKLQNEIKKLTVELmkAKDQQEDHLKHLRTLEKTLEKMERQKRQQQaaqiRLIQEVELKASAADREIYLLRTSLHREREQ 431
Cdd:TIGR02168 216 KELKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 432 AQQLHQLLALKEQ------EHRKELETREFFTDADFQDALAKEIAKEEKKHEQmikeyQEKIDVLSQQYMDLEN---EFR 502
Cdd:TIGR02168 290 LYALANEISRLEQqkqilrERLANLERQLEELEAQLEELESKLDELAEELAEL-----EEKLEELKEELESLEAeleELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 503 IALTVEARRFQDVKDGFENVATELAKSKH--ALIWAQRKENEssSLIKDLTCMVKEQKTKLAEVSKLKQETAAN-LQNQI 579
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSKVAQLELqiASLNNEIERLE--ARLERLEDRRERLQQEIEELLKKLEEAELKeLQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 580 NTLEILIED-----------DKQKSIQIELLKHEKVQLISELAAKESLIFGL-----------RTERKVWGHELAQQG-- 635
Cdd:TIGR02168 443 EELEEELEElqeelerleeaLEELREELEEAEQALDAAERELAQLQARLDSLerlqenlegfsEGVKALLKNQSGLSGil 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 636 ----------------------------------------SSLAQNR-GKL--------------EAQIESLSRENECLR 660
Cdd:TIGR02168 523 gvlselisvdegyeaaieaalggrlqavvvenlnaakkaiAFLKQNElGRVtflpldsikgteiqGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 661 KTNESDSDALRIK---------CKIIDDQTETIRKLKD------------------------------CLQEKDEHIKRL 701
Cdd:TIGR02168 603 VAKDLVKFDPKLRkalsyllggVLVVDDLDNALELAKKlrpgyrivtldgdlvrpggvitggsaktnsSILERRREIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 702 QEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKE 781
Cdd:TIGR02168 683 EEKIEELE----EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 782 VKEKFENKEKKLKAERDKSIELQKNaMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKcIDSANLKVHQIEKEMREL 861
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREALDELRAELTLLNEE-AANLRERLESLERRIAAT 836
|
650 660 670
....*....|....*....|....*....|..
gi 1164778521 862 ---LEETCKNKKTMEAKIKQLAFALNEIQQDM 890
Cdd:TIGR02168 837 errLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
695-889 |
1.33e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 695 DEHIKRLQEKITEIekctQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLch 774
Cdd:COG3883 15 DPQIQAKQKELSEL----QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 775 letqvkevkekfenkekklkAERDKSIELQKNAMEKL------HSMDDAFKRQ--VDAIVEAHQAEIAQLANEKQKcIDS 846
Cdd:COG3883 89 --------------------GERARALYRSGGSVSYLdvllgsESFSDFLDRLsaLSKIADADADLLEELKADKAE-LEA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1164778521 847 ANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQD 889
Cdd:COG3883 148 KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
429-667 |
1.34e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 429 REQAQQLHQLLAlKEQEHRKELETrefftdadfQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVE 508
Cdd:COG4942 23 AEAEAELEQLQQ-EIAELEKELAA---------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 509 ARRFQDVKDGFENVATELAK-------SKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAAN---LQNQ 578
Cdd:COG4942 93 AELRAELEAQKEELAELLRAlyrlgrqPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALraeLEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 579 INTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESlifglrterkvwghELAQQGSSLAQNRGKLEAQIESLSRENEC 658
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELA--------------ELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*....
gi 1164778521 659 LRKTNESDS 667
Cdd:COG4942 239 AAERTPAAG 247
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
425-779 |
1.81e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 425 LHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQ------DALAKEIAKEEKKHEQMIKEYQEKIDVLSQqymdLE 498
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREYEGYELLKEKEALERQKEaierqlASLEEELEKLTEEISELEKRLEEIEQLLEE----LN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 499 NEFRIALTVEARRFQdvkdgfenvaTELAKSKHALIWAQRKENESSSLIKDLtcmvkeqktklaevsklkQETAANLQNQ 578
Cdd:TIGR02169 279 KKIKDLGEEEQLRVK----------EKIGELEAEIASLERSIAEKERELEDA------------------EERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 579 INTLEILIEDDKQksiQIELLKHEKVQLISELAakeslifglrterkvwghelaqqgsSLAQNRGKLEAQIESLSRENEC 658
Cdd:TIGR02169 331 IDKLLAEIEELER---EIEEERKRRDKLTEEYA-------------------------ELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 659 LRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEkctqEQLDEKSSQLDEVLEKLERHNERKE 738
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE----AKINELEEEKEDKALEIKKQEWKLE 458
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1164778521 739 KLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQV 779
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
713-890 |
3.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 713 QEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKK 792
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 793 LKAERDKsIELQKNAMEKLH------------SMDDAFKRQ--VDAIVEAHQAEIAQLANEKQKcIDSANLKVHQIEKEM 858
Cdd:COG4942 99 LEAQKEE-LAELLRALYRLGrqpplalllspeDFLDAVRRLqyLKYLAPARREQAEELRADLAE-LAALRAELEAERAEL 176
|
170 180 190
....*....|....*....|....*....|..
gi 1164778521 859 RELLEETCKNKKTMEAKIKQLAFALNEIQQDM 890
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKEL 208
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
352-770 |
4.69e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 352 HKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAqiRLIQEVELKASAADREIYLLRTSLHREREQ 431
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE--AELAELPERLEELEERLEELRELEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 432 AQQLHQLlalkEQEHRKELETREFFTDADFQDALAK--EIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVEA 509
Cdd:COG4717 169 EAELAEL----QEELEELLEQLSLATEEELQDLAEEleELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 510 RRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDD 589
Cdd:COG4717 245 LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 590 KQKsiqIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGsslaqnrgkLEAQIESLsrenecLRKTNESDSDA 669
Cdd:COG4717 325 LAA---LGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE---------LEQEIAAL------LAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 670 LRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCT-QEQLDEKSSQLDEVLEKLERHNERKEKLKQQLK--G 746
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEElEEELEELEEELEELEEELEELREELAELEAELEqlE 466
|
410 420
....*....|....*....|....
gi 1164778521 747 KEVELEEIRKAYSTLNRKWHDKGE 770
Cdd:COG4717 467 EDGELAELLQELEELKAELRELAE 490
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
555-764 |
4.74e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 555 KEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTErkvwgheLAQQ 634
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE-------IAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 635 GSSLAQNRGKLEAQIESLSRENEC----LRKTNESDSDALRIK------CKIIDDQTETIRKLKDCLQEKDEHIKRLQEK 704
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLqylkylAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 705 ITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRK 764
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
467-777 |
4.91e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 467 KEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFrialtVEARRFQDVKDGFENVATELAKSKHALIWAQRKENESSSL 546
Cdd:TIGR00606 594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-----FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 547 IKDLTcmvkEQKTKLAEVSKLKQETAANLQNQINTLE--ILIEDDKQKSIQIELLKHEKVQLI---------SELAAKES 615
Cdd:TIGR00606 669 ITQLT----DENQSCCPVCQRVFQTEAELQEFISDLQskLRLAPDKLKSTESELKKKEKRRDEmlglapgrqSIIDLKEK 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 616 LIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENECLR------------KTNESDSDALRIKCKIIDdQTET 683
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimerfqmelKDVERKIAQQAAKLQGSD-LDRT 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 684 IRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQlDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNR 763
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ-QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902
|
330
....*....|....
gi 1164778521 764 KWHDKGELLCHLET 777
Cdd:TIGR00606 903 EIKDAKEQDSPLET 916
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
332-882 |
5.55e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 332 RLKEIIFRERNSKGQLEvMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEV-ELK 410
Cdd:PRK03918 208 EINEISSELPELREELE-KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVkELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 411 ASAADREIYLLRTSLHREREQAQQLHQLLALKEQEHRKELEtrefftdadfqdalaKEIAKEEKKHEQmIKEYQEKIDVL 490
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE---------------ERIKELEEKEER-LEELKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 491 SQQYMDLENEFRI-----ALTVEARRFQDVKDGF--ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAE 563
Cdd:PRK03918 351 EKRLEELEERHELyeeakAKKEELERLKKRLTGLtpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 564 VSKLK-----------QETAANLQNQInTLEIL-IEDDKQKSI-QIELLKHEKVQLISELAaKESLIFGLRterkvwghE 630
Cdd:PRK03918 431 LKKAKgkcpvcgreltEEHRKELLEEY-TAELKrIEKELKEIEeKERKLRKELRELEKVLK-KESELIKLK--------E 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 631 LAQQGSSLAQNRGKLEaqIESLSRENECLRKTNEsDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEK 710
Cdd:PRK03918 501 LAEQLKELEEKLKKYN--LEELEKKAEEYEKLKE-KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 711 CTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNrkwhDKGELLCHLETQVKEVKEKFENKE 790
Cdd:PRK03918 578 ELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD----KAFEELAETEKRLEELRKELEELE 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 791 KKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKcIDSANLKVHQIEKeMRELLEETCKNKK 870
Cdd:PRK03918 654 KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE-REKAKKELEKLEK-ALERVEELREKVK 731
|
570
....*....|..
gi 1164778521 871 TMEAKIKQLAFA 882
Cdd:PRK03918 732 KYKALLKERALS 743
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
342-593 |
6.10e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 342 NSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMErqkrqqqaaqiRLIQEVELKASAADREIYLL 421
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA-----------RRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 422 RTSLHREREQAQQLHQLLA--------LKEQEHRKELETREFFTDADFQDALAKEIAKEEKkheQMIKEYQEKIDVLSQQ 493
Cdd:COG4942 89 EKEIAELRAELEAQKEELAellralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARR---EQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 494 YMDLENEfrialtvearrfqdvKDGFENVATELAKSKHALiwaQRKENESSSLIKDLTcmvKEQKTKLAEVSKLKQEtAA 573
Cdd:COG4942 166 RAELEAE---------------RAELEALLAELEEERAAL---EALKAERQKLLARLE---KELAELAAELAELQQE-AE 223
|
250 260
....*....|....*....|
gi 1164778521 574 NLQNQINTLEILIEDDKQKS 593
Cdd:COG4942 224 ELEALIARLEAEAAAAAERT 243
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
642-756 |
1.11e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 642 RGKLEAQIESLSRENECLRKtnESDSDALRIKCKIIDDQTETIRKLKDCLQ----EKDEHIKRLQEKITEIEkctqEQLD 717
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEkelrERRNELQKLEKRLLQKE----ENLD 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 1164778521 718 EKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRK 756
Cdd:PRK12704 100 RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
632-842 |
1.28e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 632 AQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKc 711
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 712 tqeQLDEKSSQLDEVLEKLERhNERKEKLKQQLKGKEV-ELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKE 790
Cdd:COG4942 98 ---ELEAQKEELAELLRALYR-LGRQPPLALLLSPEDFlDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1164778521 791 KKLKAERDKsIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQK 842
Cdd:COG4942 174 AELEALLAE-LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
152-743 |
1.32e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 152 EIKLQKLDDQILQLLNETSNSIDNVLEKDPRPKRDTD-ITSESDYGNRKECNRKVPRRSKIPYDAKTIQTIKhhnknynS 230
Cdd:pfam15921 259 ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANsIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLR-------S 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 231 FVSCNRKMKPPYLKELYVSSSLANcpmlQESEKPKTEIIKVDQ-SHSEDNTYQSLVEQLdQEREKRWRAEQAENK-LMD- 307
Cdd:pfam15921 332 ELREAKRMYEDKIEELEKQLVLAN----SELTEARTERDQFSQeSGNLDDQLQKLLADL-HKREKELSLEKEQNKrLWDr 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 308 ------YIDELHKHANEKEdihslalLTTDRLKEIIFRERNS-KGQLEVMVHKLQ------NEIKKLTVELMKAKDQQED 374
Cdd:pfam15921 407 dtgnsiTIDHLRRELDDRN-------MEVQRLEALLKAMKSEcQGQMERQMAAIQgkneslEKVSSLTAQLESTKEMLRK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 375 HLKHLRTLEKTLEKMERQKRQQQAAqirlIQEVELKASAADREIYLLRTSLHREREQAQQLHQllalkEQEHRKELETRe 454
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTAS----LQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-----EGDHLRNVQTE- 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 455 fftdadfQDALAKEIAKEEKKHE----------QMIKEYQEKIDVLSQQYMDLENEFRiALTVEARRFQDVKDGFENVAT 524
Cdd:pfam15921 550 -------CEALKLQMAEKDKVIEilrqqienmtQLVGQHGRTAGAMQVEKAQLEKEIN-DRRLELQEFKILKDKKDAKIR 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 525 ELakskhaliwaqrkENESSSLIKDLTCMVKEQKTKLAEVSKLKQE------TAANLQNQINTL----EILIEDDKQKSI 594
Cdd:pfam15921 622 EL-------------EARVSDLELEKVKLVNAGSERLRAVKDIKQErdqllnEVKTSRNELNSLsedyEVLKRNFRNKSE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 595 QIELLKHE-KVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKlEAQIESLSRENECLRktnESDSDALRIK 673
Cdd:pfam15921 689 EMETTTNKlKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAK-RGQIDALQSKIQFLE---EAMTNANKEK 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 674 CKIIDDQTETIRKLKDCLQEKDE----------HIKRLQEKITEIEKCtqeqLDEKSSQLDEVLEKLERHNERKEKLKQQ 743
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEKNKmagelevlrsQERRLKEKVANMEVA----LDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-885 |
1.37e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 270 KVDQSHSEDNTYQSLVEQLDQEREKRwRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLev 349
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQR-RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDR-- 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 350 mVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHRER 429
Cdd:COG4913 340 -LEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 430 EQAQQLHQLLAlkeqehrkELETREFFTDADFQDALAkEIAKEEKKHEQMIKEYQEKIDVLSqqymdlENE--------- 500
Cdd:COG4913 419 RELRELEAEIA--------SLERRKSNIPARLLALRD-ALAEALGLDEAELPFVGELIEVRP------EEErwrgaierv 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 501 ---FRIALTVEARRFQDVKDGFENVATELA----KSKHALIWAQRKENESSSLIKDLTcmVKEQ------KTKLAEVSKL 567
Cdd:COG4913 484 lggFALTLLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKLD--FKPHpfrawlEAELGRRFDY 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 568 KQ-ETAANLQNQintleilieddkQKSIQIE-LLKHEKV--QLISELAAKESLIFGLRTERKVwgHELAQQGSSLAQNRG 643
Cdd:COG4913 562 VCvDSPEELRRH------------PRAITRAgQVKGNGTrhEKDDRRRIRSRYVLGFDNRAKL--AALEAELAELEEELA 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 644 KLEAQIESLSREneclRKTNESDSDALRikcKIIDDQTETIRklkdcLQEKDEHIKRLQEKITEIEKcTQEQLDEKSSQL 723
Cdd:COG4913 628 EAEERLEALEAE----LDALQERREALQ---RLAEYSWDEID-----VASAEREIAELEAELERLDA-SSDDLAALEEQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 724 DEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLC-----HLETQVKEVKEKFENKEKKLK--AE 796
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelraLLEERFAAALGDAVERELRENleER 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 797 RDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMRELLeetcknKKTMEAKI 876
Cdd:COG4913 775 IDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGLPEYEERFKELL------NENSIEFV 848
|
....*....
gi 1164778521 877 KQLAFALNE 885
Cdd:COG4913 849 ADLLSKLRR 857
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
644-841 |
1.70e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 644 KLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKIteiekctqEQLDEKSSQL 723
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL--------EELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 724 DEVLEKLERHNERKEkLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLEtQVKEVKEKFENKEKKLKAERDKSIEL 803
Cdd:COG4717 122 EKLLQLLPLYQELEA-LEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190
....*....|....*....|....*....|....*...
gi 1164778521 804 QKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQ 841
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
356-888 |
1.72e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 356 NEIKKLTVELMKA---KDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRliQEVELKASAADREIYLLRTSlhREREQA 432
Cdd:PTZ00121 1305 DEAKKKAEEAKKAdeaKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA--AADEAEAAEEKAEAAEKKKE--EAKKKA 1380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 433 QQLHQllalKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDvlSQQYMDLENEFRIAltVEARRF 512
Cdd:PTZ00121 1381 DAAKK----KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK--ADEAKKKAEEAKKA--DEAKKK 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 513 QDVKDGFENV---ATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDD 589
Cdd:PTZ00121 1453 AEEAKKAEEAkkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 590 KQKSIqiELLKHEKVQLISELAAKESLifglrteRKvwghelaqqgsslAQNRGKLEAQIESLSRENECLRKTNES-DSD 668
Cdd:PTZ00121 1533 AKKAD--EAKKAEEKKKADELKKAEEL-------KK-------------AEEKKKAEEAKKAEEDKNMALRKAEEAkKAE 1590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 669 ALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKE 748
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 749 VE----LEEIRKAYSTLNRKwhdKGELLCHLETQVKEVKEKFENKEKKLKAER-DKSIELQKNAMEKLHSMDDAFKRQVD 823
Cdd:PTZ00121 1671 EEdkkkAEEAKKAEEDEKKA---AEALKKEAEEAKKAEELKKKEAEEKKKAEElKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1164778521 824 A--IVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEmrELLEETCKNKKTMEAKIKQLAFALNEIQQ 888
Cdd:PTZ00121 1748 EakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE--ELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
266-754 |
3.54e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 266 TEIIKVDQSHSEDNtyQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKG 345
Cdd:COG1196 267 AELEELRLELEELE--LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 346 QLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSL 425
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 426 HREREQAQQLHQLLALKEQEHRKELETREFFTD-ADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIA 504
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEeEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 505 LTVEARRFQDVKDGFENVATELAkskhALIWAQRK-----ENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQ--N 577
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVA----VLIGVEAAyeaalEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLplD 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 578 QINTLEILI---------------------EDDKQKSIQIELLKHEKVQLISELAAKES-LIFGLRTERKVWGHELAQQG 635
Cdd:COG1196 581 KIRARAALAaalargaigaavdlvasdlreADARYYVLGDTLLGRTLVAARLEAALRRAvTLAGRLREVTLEGEGGSAGG 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 636 SSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQ 715
Cdd:COG1196 661 SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
490 500 510
....*....|....*....|....*....|....*....
gi 1164778521 716 LDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEI 754
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
564-764 |
5.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 564 VSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEK---VQLISELAAKESLIFGLRTERKVWGHEL-----AQQG 635
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELeklekLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 636 SSLAQNRGKLEAQIESLSRENECLRKtnesdsdalrikckiiddQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEq 715
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEE------------------RLEELRELEEELEELEAELAELQEELEELLEQLSL- 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1164778521 716 ldEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRK 764
Cdd:COG4717 189 --ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
331-535 |
5.68e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 331 DRLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQ----- 405
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRalyrl 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 406 ----EVELKASAAD-----REIYLLRTSLHREREQAQQLHQLLA-LKEQEHRKELETREFFTDADFQDALAKEIAKEEKK 475
Cdd:COG4942 117 grqpPLALLLSPEDfldavRRLQYLKYLAPARREQAEELRADLAeLAALRAELEAERAELEALLAELEEERAALEALKAE 196
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1164778521 476 HEQMIKEYQEKIDVLSQQYMDL-ENEFRIALTVEARRFQDVKDGFENVATELAKSKHALIW 535
Cdd:COG4942 197 RQKLLARLEKELAELAAELAELqQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
310-890 |
6.48e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 310 DELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKhlrTLEKTLEKM 389
Cdd:TIGR00618 155 AQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQ---VLEKELKHL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 390 ERQKRQQQAAQIRLIQEVELKASaadreiyllRTSLHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEI 469
Cdd:TIGR00618 232 REALQQTQQSHAYLTQKREAQEE---------QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAV 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 470 AKEEKKHEQMIKEYQEKIDVLS----------QQYMDLENEFRIALTVEA-----RRFQDVKDGF-ENVATELAKSKHAL 533
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSRAkllmkraahvKQQSSIEEQRRLLQTLHSqeihiRDAHEVATSIrEISCQQHTLTQHIH 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 534 IWAQRKE------NESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLI 607
Cdd:TIGR00618 383 TLQQQKTtltqklQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 608 SELAAKESLIFGLRTERKVWGHElaqqgsslaQNRGKLEAQIESLSRENECLRKTNESDSDALRIK-----------CKI 676
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQE---------TRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDidnpgpltrrmQRG 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 677 IDDQT---ETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQeQLDEKSSQLDEVLEKLERHNERKEKLKQ-QLKGKEVELE 752
Cdd:TIGR00618 534 EQTYAqleTSEEDVYHQLTSERKQRASLKEQMQEIQQSFS-ILTQCDNRSKEDIPNLQNITVRLQDLTEkLSEAEDMLAC 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 753 EIRKAYSTLNRKWHDKGELL----CHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLhsmddafkRQVDAIVEA 828
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLhlqqCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELL--------ASRQLALQK 684
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1164778521 829 HQAEIAQLANEKQKC--IDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM 890
Cdd:TIGR00618 685 MQSEKEQLTYWKEMLaqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL 748
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
520-753 |
6.79e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 520 ENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELL 599
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 600 KHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGssLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDD 679
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1164778521 680 QTETIRKLKDCLQEKDEHIKRLQEKITEIEKcTQEQLDEKSS---QLDEVLEKLERHNERKEKLKQQLKGKEVELEE 753
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEE-LEEELEELEAalrDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
259-718 |
7.07e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 259 QESEKPKTEIIKVDQSHSEDNTYQSLVEQLDQEREKRWRAEQAENKLMDY--IDELHKHANEKEDIHSLALLTTDRLK-E 335
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKaE 1460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 336 IIFRERNSKGQLEVMvhKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAAD 415
Cdd:PTZ00121 1461 EAKKKAEEAKKADEA--KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 416 reiylLRTSlhREREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEIAK--EEKKHEQMIKEYQEKIDVLSQQ 493
Cdd:PTZ00121 1539 -----AKKA--EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKkaEEARIEEVMKLYEEEKKMKAEE 1611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 494 YMDLENEFRIAltVEARRFQDVKDGFENVATELAKSKHALiwAQRKENESSSLIKdltcmvKEQKTKLAEVSKLKQETAA 573
Cdd:PTZ00121 1612 AKKAEEAKIKA--EELKKAEEEKKKVEQLKKKEAEEKKKA--EELKKAEEENKIK------AAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 574 NLqnqintleiliEDDKQKSIQIELLKHEKVQLISELAAKESlifglrtERKVWGHELAQQGSSLAQNRGKLEAQIESLS 653
Cdd:PTZ00121 1682 KA-----------EEDEKKAAEALKKEAEEAKKAEELKKKEA-------EEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 654 RENECLRKTNESDSDALRIKcKIIDDQTETIRK-----LKDCLQEKDEHIKRLQEKITEIEKCTQEQLDE 718
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLK-KEEEKKAEEIRKekeavIEEELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
644-756 |
7.10e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 644 KLEAQIESLSRENECLRKT-NESDSDALRIKCKIIDDQTETIRKLKdclqeKDEHIKRLQEKIteiekctqEQLDEKSSQ 722
Cdd:COG2433 417 RLEEQVERLEAEVEELEAElEEKDERIERLERELSEARSEERREIR-----KDREISRLDREI--------ERLERELEE 483
|
90 100 110
....*....|....*....|....*....|....*
gi 1164778521 723 LDEVLEKLERHNER-KEKLKQQLKGKEVELEEIRK 756
Cdd:COG2433 484 ERERIEELKRKLERlKELWKLEHSGELVPVKVVEK 518
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
425-886 |
8.32e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 425 LHREREQAQQLHQLlALKEQEHRKElETREFFTDADFQDALAKEIAKEEKKhEQMIKEYQEKIDVLSQQYMDLENEFRIA 504
Cdd:PRK01156 216 TLKEIERLSIEYNN-AMDDYNNLKS-ALNELSSLEDMKNRYESEIKTAESD-LSMELEKNNYYKELEERHMKIINDPVYK 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 505 LTVEARRF-------QDVKDGFENVATELAKSKHALiwaqRKENESSSLIKDLTCMVKEQKTKLAEVSKLKqETAANLQN 577
Cdd:PRK01156 293 NRNYINDYfkykndiENKKQILSNIDAEINKYHAII----KKLSVLQKDYNDYIKKKSRYDDLNNQILELE-GYEMDYNS 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 578 QINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENE 657
Cdd:PRK01156 368 YLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNME 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 658 CLRKTNesdsdalriKCKIIDDQTETiRKLKDCLQEKDEHIKRLQEKITEIEKcTQEQLDEKSSQLDEVLEKLERHN-ER 736
Cdd:PRK01156 448 MLNGQS---------VCPVCGTTLGE-EKSNHIINHYNEKKSRLEEKIREIEI-EVKDIDEKIVDLKKRKEYLESEEiNK 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 737 KEKLKQQLKGKEVELEEIRKAYSTLNRKwHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIE---LQKNAMEKLHS 813
Cdd:PRK01156 517 SINEYNKIESARADLEDIKIKINELKDK-HDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDietNRSRSNEIKKQ 595
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1164778521 814 MDDAFKRQVDAIVEAHQAE--IAQLANEKQKCIDSANLKVHQIE--KEMRELLEETCKNKKTMEAKIKQLAFALNEI 886
Cdd:PRK01156 596 LNDLESRLQEIEIGFPDDKsyIDKSIREIENEANNLNNKYNEIQenKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI 672
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
536-781 |
8.46e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 536 AQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAaNLQNQINTLEILIEDDKQK-----------SIQIELLKHEKV 604
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK-DLTNQDSVKELIIKNLDNTresletqlkvlSRSINKIKQNLE 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 605 QLISELAAKESLIFGLRTERKvwghELAQQGSSLAQNRGKLEAQIESLSREneclrkTNESDSDALRIKCKII-DDQTET 683
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKK----ELEEKVKDLTKKISSLKEKIEKLESE------KKEKESKISDLEDELNkDDFELK 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 684 IRKLKDCLQEKDEHIKRLQEKITEIEKCT---QEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYST 760
Cdd:TIGR04523 556 KENLEKEIDEKNKEIEELKQTQKSLKKKQeekQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
250 260
....*....|....*....|.
gi 1164778521 761 LNRKWHDKGELLCHLETQVKE 781
Cdd:TIGR04523 636 IKSKKNKLKQEVKQIKETIKE 656
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
258-839 |
9.67e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 258 LQESEKPKTEIIKvdqshsEDNTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKhanEKEDIHSLALLTTDRLKEII 337
Cdd:PRK03918 195 IKEKEKELEEVLR------EINEISSELPELREELEKLEKEVKELEELKEEIEELEK---ELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 338 FRERNSKGQLEVMVHKLQ--NEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQqaaqIRLIQEVELKASAAD 415
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKelKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI----EERIKELEEKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 416 ---REIYLLRTSLHREREQAQQLHQLLALKEQ--EHRKELETREfftdadfqdalAKEIAKEEKKHEQMIKEYQEKIDVL 490
Cdd:PRK03918 342 elkKKLKELEKRLEELEERHELYEEAKAKKEEleRLKKRLTGLT-----------PEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 491 SQQYMDLENefrialtvearRFQDVKDGFEnvATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQE 570
Cdd:PRK03918 411 TARIGELKK-----------EIKELKKAIE--ELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 571 TAANLQNQINTLEILIEDDKQKSI--QIELLKHE-KVQLISELAAKESLIFGLRTERKvwghELAQQGSSLAQNRGKLEA 647
Cdd:PRK03918 478 LRKELRELEKVLKKESELIKLKELaeQLKELEEKlKKYNLEELEKKAEEYEKLKEKLI----KLKGEIKSLKKELEKLEE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 648 QIESLSRENECLRKTNESDSDALRI----KCKIIDDQTETIRKLKDCLQEKDE---HIKRLQEKITEIEKCtQEQLDEKS 720
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKEleelGFESVEELEERLKELEPFYNEYLElkdAEKELEREEKELKKL-EEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1164778521 721 SQLDEVLEKLERHNERKEKLKQqlKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKA--ERD 798
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEK--KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEreKAK 710
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1164778521 799 KSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANE 839
Cdd:PRK03918 711 KELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASE 751
|
|
| |
