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Conserved domains on  [gi|1179685317|ref|NP_001337334|]
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dyslexia-associated protein KIAA0319 isoform g precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
myxo_dep_M36 super family cl45606
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 398-780 4.34e-38

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


The actual alignment was detected with superfamily member NF038112:

Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 155.59  E-value: 4.34e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  398 NLPPVAVVSPQLQELTLplTSALIDGSQSTD-DTEIVSYHWEEINGPFIEeKTSVDSP--------VLRLSNLdpgnySF 468
Cdd:NF038112  1185 NRRPVANAGPDQTVLER--TTVTLNGSGSFDpDGDPLTYAWTQVSGPAVT-LTGADTAtpsftapeVTADTVL-----TF 1256

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  469 RLTVTDSDGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDDHQIVLYEWSLGPGSEgkhVVMQGVQ 548
Cdd:NF038112  1257 QLVVSDGTKTSAPDTVTVLVRN-VNRAPVAVAGAPATVD-ERSTVTLDGSGTDADGDALTYAWTQTSGPA---VTLTGAT 1331

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  549 TPYLHLSAMQ---EGDYTFQLKVTDSSrQQSTAVVTVIVQPENnRPPVAVAGPDKElIFPVESATLDGSSSSDDHGIVFY 625
Cdd:NF038112  1332 TATATFTAPEvtaDTQLTFTLTVSDGT-ASATDTVTVTVRNVN-RAPVANAGADQT-VDERSTVTLSGSATDPDGDALTY 1408

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  626 HWEHVRGPsAVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTVAVKKENNSPpRARAGGRhVLVLPNNS 702
Cdd:NF038112  1409 AWTQTAGP-TVTLTGADTATASFTAPEVAadtELTFQLTVSADGQASADVTVTVTVRNVNRAP-VAHAGES-ITVDEGST 1485

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  703 ITLDGSRSTDDQRIVSYLWIRDGQSPAAgdvIDGSDHSVALQLTNLVEG--VYTFHLRVTDSQGASDTDTATVEVQPDPR 780
Cdd:NF038112  1486 VTLDASATDPDGDTLTYAWTQVAGPSVT---LTGADSAKLTFTAPEVSAdtTLTFSLTVTDGSGSSGPVVVTVTVKNVNR 1562
MANEC smart00765
The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is ...
 20-102 1.42e-21

The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.


:

Pssm-ID: 129004  Cd Length: 93  Bit Score: 90.20  E-value: 1.42e-21
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317    20 CARKQCSEG-RTYSNAVISPNLETTRIMRV----SHTFPVVDCTAACCDLSSCDLAWWF------EGRCYLVSC--PHKE 86
Cdd:smart00765    1 SPGEDCLGRfRVLENAIIRTEESLSAGARFlkspIAVNTWEDCVRACCSTPNCNLAVFElrredaEGNCYLFNCtyPGKE 80

                            90
                    ....*....|....*.
gi 1179685317    87 NCepkKMGPIRSYLTF 102
Cdd:smart00765   81 VC---KFKPHEGYTSY 93
PARM super family cl37917
PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...
 202-333 8.31e-04

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present in most tissues, with high levels in the heart, kidney and placenta. It has been shown to be induced and expressed in prostate after castration and may have a role in cell proliferation and immortalization in prostate cancer.


The actual alignment was detected with superfamily member pfam17061:

Pssm-ID: 465341 [Multi-domain]  Cd Length: 296  Bit Score: 42.54  E-value: 8.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  202 SPAVPAE-TQQDPELHYL------NESASTPA---PKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMP 271
Cdd:pfam17061   78 SPASNWEgTSTDPSPPGLsptssgVHLTPTPEehsSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSA 157

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1179685317  272 SHSLPPASLELSSvtvEKSPVLTvTPGS--TEHSIPTPPTSAAPSESTPSElPISPTTAPRTET 333
Cdd:pfam17061  158 SVTTNHSSTETST---QPTGAPT-TPESptEEHSSGHTPTSHATSEPVPTE-TTPQTTVPSKVT 216
 
Name Accession Description Interval E-value
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 398-780 4.34e-38

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 155.59  E-value: 4.34e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  398 NLPPVAVVSPQLQELTLplTSALIDGSQSTD-DTEIVSYHWEEINGPFIEeKTSVDSP--------VLRLSNLdpgnySF 468
Cdd:NF038112  1185 NRRPVANAGPDQTVLER--TTVTLNGSGSFDpDGDPLTYAWTQVSGPAVT-LTGADTAtpsftapeVTADTVL-----TF 1256

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  469 RLTVTDSDGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDDHQIVLYEWSLGPGSEgkhVVMQGVQ 548
Cdd:NF038112  1257 QLVVSDGTKTSAPDTVTVLVRN-VNRAPVAVAGAPATVD-ERSTVTLDGSGTDADGDALTYAWTQTSGPA---VTLTGAT 1331

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  549 TPYLHLSAMQ---EGDYTFQLKVTDSSrQQSTAVVTVIVQPENnRPPVAVAGPDKElIFPVESATLDGSSSSDDHGIVFY 625
Cdd:NF038112  1332 TATATFTAPEvtaDTQLTFTLTVSDGT-ASATDTVTVTVRNVN-RAPVANAGADQT-VDERSTVTLSGSATDPDGDALTY 1408

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  626 HWEHVRGPsAVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTVAVKKENNSPpRARAGGRhVLVLPNNS 702
Cdd:NF038112  1409 AWTQTAGP-TVTLTGADTATASFTAPEVAadtELTFQLTVSADGQASADVTVTVTVRNVNRAP-VAHAGES-ITVDEGST 1485

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  703 ITLDGSRSTDDQRIVSYLWIRDGQSPAAgdvIDGSDHSVALQLTNLVEG--VYTFHLRVTDSQGASDTDTATVEVQPDPR 780
Cdd:NF038112  1486 VTLDASATDPDGDTLTYAWTQVAGPSVT---LTGADSAKLTFTAPEVSAdtTLTFSLTVTDGSGSSGPVVVTVTVKNVNR 1562
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 371-687 7.23e-31

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 132.09  E-value: 7.23e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  371 VFKVTVSSE-NAFGEGFVNVTVkpaRRVNLPPVAVVS-PQLQELTLPLTsalIDGSQSTDDTEIVSYHWEEINGPFIeek 448
Cdd:NF038112  1255 TFQLVVSDGtKTSAPDTVTVLV---RNVNRAPVAVAGaPATVDERSTVT---LDGSGTDADGDALTYAWTQTSGPAV--- 1325

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  449 TSVDSPVLRLSNLDP-----GNYSFRLTVTDSdGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDD 523
Cdd:NF038112  1326 TLTGATTATATFTAPevtadTQLTFTLTVSDG-TASATDTVTVTVRN-VNRAPVANAGADQTVD-ERSTVTLSGSATDPD 1402

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  524 HQIVLYEWSlgpGSEGKHVVMQGVQTPYLHLSA---MQEGDYTFQLKVTDSSrqQSTAVVTVIVQPEN-NRPPVAVAGPD 599
Cdd:NF038112  1403 GDALTYAWT---QTAGPTVTLTGADTATASFTApevAADTELTFQLTVSADG--QASADVTVTVTVRNvNRAPVAHAGES 1477

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  600 KELIfPVESATLDGSSSSDDHGIVFYHWEHVRGPSaVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTV 676
Cdd:NF038112  1478 ITVD-EGSTVTLDASATDPDGDTLTYAWTQVAGPS-VTLTGADSAKLTFTAPEVSadtTLTFSLTVTDGSGSSGPVVVTV 1555

                          330
                   ....*....|.
gi 1179685317  677 AVKKENNSPPR 687
Cdd:NF038112  1556 TVKNVNRAPDG 1566
MANEC smart00765
The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is ...
 20-102 1.42e-21

The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.


Pssm-ID: 129004  Cd Length: 93  Bit Score: 90.20  E-value: 1.42e-21
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317    20 CARKQCSEG-RTYSNAVISPNLETTRIMRV----SHTFPVVDCTAACCDLSSCDLAWWF------EGRCYLVSC--PHKE 86
Cdd:smart00765    1 SPGEDCLGRfRVLENAIIRTEESLSAGARFlkspIAVNTWEDCVRACCSTPNCNLAVFElrredaEGNCYLFNCtyPGKE 80

                            90
                    ....*....|....*.
gi 1179685317    87 NCepkKMGPIRSYLTF 102
Cdd:smart00765   81 VC---KFKPHEGYTSY 93
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 513-793 3.65e-10

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 63.29  E-value: 3.65e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  513 ITLNGNQSSDDHQIvLYEWSLGPGSEGKHVVMQG----VQTPYLHLS--AMQEGDYTFQLKVTDSSRQ--QSTAVVTVIV 584
Cdd:pfam02010    1 ASVELNGCFSAYTI-DYLWSVFTVSSNLNLQTISspkdLVLPQLTIPsgTLPYGTYVFTLTVSLSSTPslAGTDIITVTV 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  585 QPennRPPVAVAGPDKELIFPV-ESATLDGSSSSD------DHGIVFYHWEHVRGPSAVE-MENID-------------- 642
Cdd:pfam02010   80 QP---SPLVAVIDGGSSRVVGYnQDLTLDGSESYDpdvdpgSSSGLTYLWSCRRSSSGDNpLLNNDpvcfsdqnegtllq 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  643 --KAIATVTG--LQVG-TYHFRLTVKDQQGLSSTSTLTVAVKKENnsPPRARAGGRH---VLVLPNNSITLDGSRSTDDQ 714
Cdd:pfam02010  157 stSSSLTIPAstLQANvTYTFKLTVSKGSRNSASTTQTILVVDGN--PPIIILSCISncnRKNNPVDRLVLLASTCLNCS 234

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  715 R---IVSYLWIRDGQS-------PAAGDVIDGSDHS-VALQLTNLVEGV-YTFHLRVTDSQGASDTDT-ATVEVQPDPRk 781
Cdd:pfam02010  235 SdlsDVTYRWLSLGSEntslvldQLNSQTSTGRSGPyLVIKAGVLQSGVsYRFTLIVTVYPGLVSGLAsISFITNAPPT- 313

                          330
                   ....*....|..
gi 1179685317  782 SGLVELTLQVGV 793
Cdd:pfam02010  314 GGTCSVTPTEGT 325
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 402-488 6.61e-10

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 56.31  E-value: 6.61e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317   402 VAVVSPQLQELTLPLTSALIDgsQSTDDTEIVSYHWEEINGPFIEEKTSVdspvlrLSNLDPGNYSFRLTVTDSDGaTNS 481
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTA--TSSDDGSIVSYTWDFGDGTSSTGPTVT------HTYTKPGTYTVTLTVTNAVG-SAS 71


                    ....*..
gi 1179685317   482 TTAALIV 488
Cdd:smart00089   72 ATVTVVV 78
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 593-678 1.93e-08

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 52.50  E-value: 1.93e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  593 VAVAGPDKELIFPVESATLDGSSSSDDhGIVFYHWEhvRGPSAVEMENIdkAIATVTGLQVGTYHFRLTVKDQQGLSSTS 672
Cdd:cd00146      1 PTASVSAPPVAELGASVTFSASDSSGG-SIVSYKWD--FGDGEVSSSGE--PTVTHTYTKPGTYTVTLTVTNAVGSSSTK 75


                   ....*.
gi 1179685317  673 TLTVAV 678
Cdd:cd00146     76 TTTVVV 81
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
448-785 6.85e-05

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 46.92  E-value: 6.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  448 KTSVDSPVLRLSNLDPGN-YSFRLTVTDSDGATNSTTAALIVNNAVdyPPVANAGPNHTITLPqNSITLNGnQSSDDHQI 526
Cdd:COG3401    186 TVTSTTLVDGGGDIEPGTtYYYRVAATDTGGESAPSNEVSVTTPTT--PPSAPTGLTATADTP-GSVTLSW-DPVTESDA 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  527 VLYEWSLGPGSEGKHVVMQGVQ-TPYLHLSAMQEGDYTFQLKVTDSSRQQSTAVVTVIVQPENNrPPVAVAGPdkelifp 605
Cdd:COG3401    262 TGYRVYRSNSGDGPFTKVATVTtTSYTDTGLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLT-PPAAPSGL------- 333

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  606 veSATLDGSSS-------SDDHGIVFYH---WEHVRGPSAVEMENIDKAIATVTGLQVG-TYHFRLTVKDQQGLSSTSTL 674
Cdd:COG3401    334 --TATAVGSSSitlswtaSSDADVTGYNvyrSTSGGGTYTKIAETVTTTSYTDTGLTPGtTYYYKVTAVDAAGNESAPSE 411

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  675 TVAVKKENNsPPRARAGGRHVLVLPNNSITLDGSRSTDDQRIVSYLWIRDGQSPAAGDVIDGSDHSVALQLTNLVEGVYT 754
Cdd:COG3401    412 EVSATTASA-ASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLS 490

                          330       340       350
                   ....*....|....*....|....*....|.
gi 1179685317  755 FHLRVTDSQGASDTDTATVEVQPDPRKSGLV 785
Cdd:COG3401    491 VTTGSLVGGSGASSVTNSVSVIGASAAAAVG 521
MANEC pfam07502
MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the ...
 56-87 6.45e-04

MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the N-terminal region of several membrane-associated and extracellular proteins. Although formerly called MANSC (for motif at N terminus with seven cysteines) it has now been renamed by MANEC (motif at N terminus with eight cysteines) by Richard Mitter and Stephen Fitzgerald after the discovery of an eighth conserved cysteine. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors.


Pssm-ID: 462186  Cd Length: 90  Bit Score: 39.60  E-value: 6.45e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1179685317   56 DCTAACCDLSSCDLAwWFE---------GRCYLVSCPHKEN 87
Cdd:pfam07502   38 DCVRACCSTPRCNLA-VFEerpggedaiPSCYLFNCLYPSR 77
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 365-592 6.54e-04

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 43.92  E-value: 6.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  365 LSVGLYVFKVTVSSENA--FGEGFVNVTVKPARRVnlPPVAVVSPQLQELTLPLtsaLIDGSQSTD------DTEIVSYH 436
Cdd:TIGR00864 2219 LAAGHYCFVFSLSFEDTplKKAACANLGVAAARLM--PIIEGGSYRVWSDTQDL---QLDAEESYDpnldddDQSLLHFH 2293

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  437 WEEINGPFIEEKTSV-------DSPVLRL--SNLDPG-NYSFRLTVTDSDGATNSTTAALIVNNA---VDYPPVANAGPN 503
Cdd:TIGR00864 2294 WACQASSKGEAGCCAlnfglggKGPTLGIpgEELAAGiEYTFKLSIGKAGMKEEATNQTVLIQSGhipIVSLECVSCKAQ 2373

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  504 HTITLPQNS-ITLNG---NQSSDDHQ------------IVLYEWSLGPGSEGKHVVM-QGVqtpyLHLSamqEGdYTFQL 566
Cdd:TIGR00864 2374 ALYEVSQNSyVYLEGrclNCQSGFHRgrwaartfqndtLVLDESSTSTGSAGMNLVLrQGV----LHDG---EG-YNFTL 2445

                          250       260
                   ....*....|....*....|....*.
gi 1179685317  567 KVTDSSRQQSTAvVTVIVQPenNRPP 592
Cdd:TIGR00864 2446 HVLDDSGDEEGA-ASIRLHH--NMPP 2468
PARM pfam17061
PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...
 202-333 8.31e-04

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present in most tissues, with high levels in the heart, kidney and placenta. It has been shown to be induced and expressed in prostate after castration and may have a role in cell proliferation and immortalization in prostate cancer.


Pssm-ID: 465341 [Multi-domain]  Cd Length: 296  Bit Score: 42.54  E-value: 8.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  202 SPAVPAE-TQQDPELHYL------NESASTPA---PKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMP 271
Cdd:pfam17061   78 SPASNWEgTSTDPSPPGLsptssgVHLTPTPEehsSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSA 157

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1179685317  272 SHSLPPASLELSSvtvEKSPVLTvTPGS--TEHSIPTPPTSAAPSESTPSElPISPTTAPRTET 333
Cdd:pfam17061  158 SVTTNHSSTETST---QPTGAPT-TPESptEEHSSGHTPTSHATSEPVPTE-TTPQTTVPSKVT 216
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 170-336 1.91e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.22  E-value: 1.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  170 PSGKQEPRGSAEYTDWGLLP---GSEGAFNSSVGDSPAVPAETQQDPelhyLNESASTPAPKLPERsvllPLPTTPSSGe 246
Cdd:PLN03209   324 PSQRVPPKESDAADGPKPVPtkpVTPEAPSPPIEEEPPQPKAVVPRP----LSPYTAYEDLKPPTS----PIPTPPSSS- 394

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  247 vleKEKASQLQEQSSNSSGKevLMPSHSLPPASLELSSVTVEKSPVLTVTPGSTEHSI-------PTPPTSAAPSESTPS 319
Cdd:PLN03209   395 ---PASSKSVDAVAKPAEPD--VVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLkpptspsPTAPTGVSPSVSSTS 469

                          170
                   ....*....|....*..
gi 1179685317  320 ELPISPTTAPRTETTYN 336
Cdd:PLN03209   470 SVPAVPDTAPATAATDA 486
 
Name Accession Description Interval E-value
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 398-780 4.34e-38

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 155.59  E-value: 4.34e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  398 NLPPVAVVSPQLQELTLplTSALIDGSQSTD-DTEIVSYHWEEINGPFIEeKTSVDSP--------VLRLSNLdpgnySF 468
Cdd:NF038112  1185 NRRPVANAGPDQTVLER--TTVTLNGSGSFDpDGDPLTYAWTQVSGPAVT-LTGADTAtpsftapeVTADTVL-----TF 1256

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  469 RLTVTDSDGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDDHQIVLYEWSLGPGSEgkhVVMQGVQ 548
Cdd:NF038112  1257 QLVVSDGTKTSAPDTVTVLVRN-VNRAPVAVAGAPATVD-ERSTVTLDGSGTDADGDALTYAWTQTSGPA---VTLTGAT 1331

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  549 TPYLHLSAMQ---EGDYTFQLKVTDSSrQQSTAVVTVIVQPENnRPPVAVAGPDKElIFPVESATLDGSSSSDDHGIVFY 625
Cdd:NF038112  1332 TATATFTAPEvtaDTQLTFTLTVSDGT-ASATDTVTVTVRNVN-RAPVANAGADQT-VDERSTVTLSGSATDPDGDALTY 1408

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  626 HWEHVRGPsAVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTVAVKKENNSPpRARAGGRhVLVLPNNS 702
Cdd:NF038112  1409 AWTQTAGP-TVTLTGADTATASFTAPEVAadtELTFQLTVSADGQASADVTVTVTVRNVNRAP-VAHAGES-ITVDEGST 1485

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  703 ITLDGSRSTDDQRIVSYLWIRDGQSPAAgdvIDGSDHSVALQLTNLVEG--VYTFHLRVTDSQGASDTDTATVEVQPDPR 780
Cdd:NF038112  1486 VTLDASATDPDGDTLTYAWTQVAGPSVT---LTGADSAKLTFTAPEVSAdtTLTFSLTVTDGSGSSGPVVVTVTVKNVNR 1562
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 371-687 7.23e-31

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 132.09  E-value: 7.23e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  371 VFKVTVSSE-NAFGEGFVNVTVkpaRRVNLPPVAVVS-PQLQELTLPLTsalIDGSQSTDDTEIVSYHWEEINGPFIeek 448
Cdd:NF038112  1255 TFQLVVSDGtKTSAPDTVTVLV---RNVNRAPVAVAGaPATVDERSTVT---LDGSGTDADGDALTYAWTQTSGPAV--- 1325

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  449 TSVDSPVLRLSNLDP-----GNYSFRLTVTDSdGATNSTTAALIVNNaVDYPPVANAGPNHTITlPQNSITLNGNQSSDD 523
Cdd:NF038112  1326 TLTGATTATATFTAPevtadTQLTFTLTVSDG-TASATDTVTVTVRN-VNRAPVANAGADQTVD-ERSTVTLSGSATDPD 1402

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  524 HQIVLYEWSlgpGSEGKHVVMQGVQTPYLHLSA---MQEGDYTFQLKVTDSSrqQSTAVVTVIVQPEN-NRPPVAVAGPD 599
Cdd:NF038112  1403 GDALTYAWT---QTAGPTVTLTGADTATASFTApevAADTELTFQLTVSADG--QASADVTVTVTVRNvNRAPVAHAGES 1477

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  600 KELIfPVESATLDGSSSSDDHGIVFYHWEHVRGPSaVEMENIDKAIATVTGLQVG---TYHFRLTVKDQQGLSSTSTLTV 676
Cdd:NF038112  1478 ITVD-EGSTVTLDASATDPDGDTLTYAWTQVAGPS-VTLTGADSAKLTFTAPEVSadtTLTFSLTVTDGSGSSGPVVVTV 1555

                          330
                   ....*....|.
gi 1179685317  677 AVKKENNSPPR 687
Cdd:NF038112  1556 TVKNVNRAPDG 1566
MANEC smart00765
The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is ...
 20-102 1.42e-21

The MANEC domain, formerly called MANSC; This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.


Pssm-ID: 129004  Cd Length: 93  Bit Score: 90.20  E-value: 1.42e-21
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317    20 CARKQCSEG-RTYSNAVISPNLETTRIMRV----SHTFPVVDCTAACCDLSSCDLAWWF------EGRCYLVSC--PHKE 86
Cdd:smart00765    1 SPGEDCLGRfRVLENAIIRTEESLSAGARFlkspIAVNTWEDCVRACCSTPNCNLAVFElrredaEGNCYLFNCtyPGKE 80

                            90
                    ....*....|....*.
gi 1179685317    87 NCepkKMGPIRSYLTF 102
Cdd:smart00765   81 VC---KFKPHEGYTSY 93
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 513-793 3.65e-10

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 63.29  E-value: 3.65e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  513 ITLNGNQSSDDHQIvLYEWSLGPGSEGKHVVMQG----VQTPYLHLS--AMQEGDYTFQLKVTDSSRQ--QSTAVVTVIV 584
Cdd:pfam02010    1 ASVELNGCFSAYTI-DYLWSVFTVSSNLNLQTISspkdLVLPQLTIPsgTLPYGTYVFTLTVSLSSTPslAGTDIITVTV 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  585 QPennRPPVAVAGPDKELIFPV-ESATLDGSSSSD------DHGIVFYHWEHVRGPSAVE-MENID-------------- 642
Cdd:pfam02010   80 QP---SPLVAVIDGGSSRVVGYnQDLTLDGSESYDpdvdpgSSSGLTYLWSCRRSSSGDNpLLNNDpvcfsdqnegtllq 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  643 --KAIATVTG--LQVG-TYHFRLTVKDQQGLSSTSTLTVAVKKENnsPPRARAGGRH---VLVLPNNSITLDGSRSTDDQ 714
Cdd:pfam02010  157 stSSSLTIPAstLQANvTYTFKLTVSKGSRNSASTTQTILVVDGN--PPIIILSCISncnRKNNPVDRLVLLASTCLNCS 234

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  715 R---IVSYLWIRDGQS-------PAAGDVIDGSDHS-VALQLTNLVEGV-YTFHLRVTDSQGASDTDT-ATVEVQPDPRk 781
Cdd:pfam02010  235 SdlsDVTYRWLSLGSEntslvldQLNSQTSTGRSGPyLVIKAGVLQSGVsYRFTLIVTVYPGLVSGLAsISFITNAPPT- 313

                          330
                   ....*....|..
gi 1179685317  782 SGLVELTLQVGV 793
Cdd:pfam02010  314 GGTCSVTPTEGT 325
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 402-488 6.61e-10

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 56.31  E-value: 6.61e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317   402 VAVVSPQLQELTLPLTSALIDgsQSTDDTEIVSYHWEEINGPFIEEKTSVdspvlrLSNLDPGNYSFRLTVTDSDGaTNS 481
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTA--TSSDDGSIVSYTWDFGDGTSSTGPTVT------HTYTKPGTYTVTLTVTNAVG-SAS 71


                    ....*..
gi 1179685317   482 TTAALIV 488
Cdd:smart00089   72 ATVTVVV 78
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 359-684 3.11e-09

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 60.59  E-value: 3.11e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  359 TLNLSQLSVGLYVFKVTVSSE---NAFGEGFVNVTVKPArrvnlPPVAV-------VSPQLQELTLpltsaliDGSQSTD 428
Cdd:pfam02010   44 TIPSGTLPYGTYVFTLTVSLSstpSLAGTDIITVTVQPS-----PLVAVidggssrVVGYNQDLTL-------DGSESYD 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  429 ------DTEIVSYHWEEINGPFIEEKTSVDSPV-----LRLSNLDPGN---------------YSFRLTVTDSDGATNST 482
Cdd:pfam02010  112 pdvdpgSSSGLTYLWSCRRSSSGDNPLLNNDPVcfsdqNEGTLLQSTSssltipastlqanvtYTFKLTVSKGSRNSAST 191

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  483 TAALIVNNavDYPP------VANAGpnhTITLPQNS---ITLNGNQSSDDHQIVLYEWsLGPGSEGKHVV--------MQ 545
Cdd:pfam02010  192 TQTILVVD--GNPPiiilscISNCN---RKNNPVDRlvlLASTCLNCSSDLSDVTYRW-LSLGSENTSLVldqlnsqtST 265

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  546 GVQTPYLHLSA--MQEG-DYTFQLKVTDSSRQQS-TAVVTVIvqpeNNRPPVAVA-------GPDKELIFPVESatldgS 614
Cdd:pfam02010  266 GRSGPYLVIKAgvLQSGvSYRFTLIVTVYPGLVSgLASISFI----TNAPPTGGTcsvtpteGTALETKFTVTC-----Q 336

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  615 SSSDDHGIVFYHWEHVRGPSAVEMENI------DKAIATVTGLQVGTYHFRLT----VKDQQGLSSTSTLTVAVKKENNS 684
Cdd:pfam02010  337 GWTDDDLPLTYQFGDISFREASEEWFLlyegssQISISTFLPPGLPANDYQVTvvvvVYDSLGAATSVSLTITVTPPSSS 416
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 497-585 7.04e-09

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 53.61  E-value: 7.04e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317   497 VANAGPNHTITLPQNSITLNGnQSSDDHQIVLYEWSLGPG--SEGKHVVMQgvqtpYLHlsamqEGDYTFQLKVTDSSRq 574
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTA-TSSDDGSIVSYTWDFGDGtsSTGPTVTHT-----YTK-----PGTYTVTLTVTNAVG- 68

                            90
                    ....*....|.
gi 1179685317   575 QSTAVVTVIVQ 585
Cdd:smart00089   69 SASATVTVVVQ 79
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 593-679 7.99e-09

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 53.22  E-value: 7.99e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317   593 VAVAGPDKELIFPVESATLDGSSSsDDHGIVFYHWEHVRGPSAVEmenidkAIATVTGLQVGTYHFRLTVKDQQGlSSTS 672
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTATSS-DDGSIVSYTWDFGDGTSSTG------PTVTHTYTKPGTYTVTLTVTNAVG-SASA 72


                    ....*..
gi 1179685317   673 TLTVAVK 679
Cdd:smart00089   73 TVTVVVQ 79
REJ pfam02010
REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor ...
 456-777 1.11e-08

REJ domain; The REJ (Receptor for Egg Jelly) domain is found in PKD1, and the sperm receptor for egg jelly Swiss:Q26627. The function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains.


Pssm-ID: 366875 [Multi-domain]  Cd Length: 448  Bit Score: 58.67  E-value: 1.11e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  456 LRLSNLDPGNYSFRLTVTDSDgaTNSTTAALIVNNAVDYPP-VANAGPNHTITLPQNS-ITLNGNQSSD------DHQIV 527
Cdd:pfam02010   45 IPSGTLPYGTYVFTLTVSLSS--TPSLAGTDIITVTVQPSPlVAVIDGGSSRVVGYNQdLTLDGSESYDpdvdpgSSSGL 122

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  528 LYEWSLGPGSEGKHVVM--QGVQTPYLH-LSAMQEGD---------------YTFQLKVTDSSRQQSTAVVTVIVQPENn 589
Cdd:pfam02010  123 TYLWSCRRSSSGDNPLLnnDPVCFSDQNeGTLLQSTSssltipastlqanvtYTFKLTVSKGSRNSASTTQTILVVDGN- 201

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  590 rPP---VAVAGPDKELIFPVES---ATLDGSSSSDDHGIVFYHWEHVRGPSAVEMENI--DKAIATVTG---------LQ 652
Cdd:pfam02010  202 -PPiiiLSCISNCNRKNNPVDRlvlLASTCLNCSSDLSDVTYRWLSLGSENTSLVLDQlnSQTSTGRSGpylvikagvLQ 280

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  653 VGT-YHFRLTVKDQQGLSSTSTlTVAVKkeNNSPPRaraGGRhVLVLPNN------SITLDGSRSTDD------------ 713
Cdd:pfam02010  281 SGVsYRFTLIVTVYPGLVSGLA-SISFI--TNAPPT---GGT-CSVTPTEgtaletKFTVTCQGWTDDdlpltyqfgdis 353

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1179685317  714 --QRIVSYLWIRDGQSPaagdvidgSDHSVALQLTNLVEG-VYTFHLRVTDSQGASDTDTATVEVQP 777
Cdd:pfam02010  354 frEASEEWFLLYEGSSQ--------ISISTFLPPGLPANDyQVTVVVVVYDSLGAATSVSLTITVTP 412
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 593-678 1.93e-08

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 52.50  E-value: 1.93e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  593 VAVAGPDKELIFPVESATLDGSSSSDDhGIVFYHWEhvRGPSAVEMENIdkAIATVTGLQVGTYHFRLTVKDQQGLSSTS 672
Cdd:cd00146      1 PTASVSAPPVAELGASVTFSASDSSGG-SIVSYKWD--FGDGEVSSSGE--PTVTHTYTKPGTYTVTLTVTNAVGSSSTK 75


                   ....*.
gi 1179685317  673 TLTVAV 678
Cdd:cd00146     76 TTTVVV 81
PKD smart00089
Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 ...
 687-776 8.03e-08

Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.


Pssm-ID: 214510 [Multi-domain]  Cd Length: 79  Bit Score: 50.53  E-value: 8.03e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317   687 RARAGGRHVLVLPNNSITLDGSrSTDDQRIVSYLWirdgqspaagDVIDGSD-HSVALQLTNLVEGVYTFHLRVTDSQGa 765
Cdd:smart00089    1 VADVSASPTVGVAGESVTFTAT-SSDDGSIVSYTW----------DFGDGTSsTGPTVTHTYTKPGTYTVTLTVTNAVG- 68

                            90
                    ....*....|.
gi 1179685317   766 SDTDTATVEVQ 776
Cdd:smart00089   69 SASATVTVVVQ 79
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 589-678 1.93e-07

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 49.58  E-value: 1.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  589 NRPPVAVAGPDKElIFPVESATLDGSSSSD-DHGIVFYHWEHVRGpSAVEMENIDKAIATvtglqVGTYHFRLTVKDQQG 667
Cdd:pfam18911    1 NAAPVADAGGDRI-VAEGETVTFDASASDDpDGDILSYRWDFGDG-TTATGANVSHTYAA-----PGTYTVTLTVTDDSG 73

                           90
                   ....*....|..
gi 1179685317  668 LS-STSTLTVAV 678
Cdd:pfam18911   74 ASnSTATDTVTV 85
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 686-775 2.73e-07

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 49.03  E-value: 2.73e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  686 PRARAGGRHVlVLPNNSITLDGSrSTDDQRIVSYLWIRDGqspaaGDVIDGSDHSValQLTNLVEGVYTFHLRVTDSQGA 765
Cdd:cd00146      1 PTASVSAPPV-AELGASVTFSAS-DSSGGSIVSYKWDFGD-----GEVSSSGEPTV--THTYTKPGTYTVTLTVTNAVGS 71

                           90
                   ....*....|
gi 1179685317  766 SDTDTATVEV 775
Cdd:cd00146     72 SSTKTTTVVV 81
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 496-584 5.41e-07

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 48.26  E-value: 5.41e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  496 PVANAGPNHTITLPQnSITLNGNqSSDDHQIVLYEWSLGPGSegkhVVMQGVQTPylHLSAMQEGDYTFQLKVTDSSRQQ 575
Cdd:cd00146      1 PTASVSAPPVAELGA-SVTFSAS-DSSGGSIVSYKWDFGDGE----VSSSGEPTV--THTYTKPGTYTVTLTVTNAVGSS 72


                   ....*....
gi 1179685317  576 STAVVTVIV 584
Cdd:cd00146     73 STKTTTVVV 81
PKD cd00146
polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an ...
 400-488 1.14e-06

polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.


Pssm-ID: 238084 [Multi-domain]  Cd Length: 81  Bit Score: 47.49  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  400 PPVAVVSPQLQELTLPLT-SAlidgsQSTDDTEIVSYHWEEINGPFIeektSVDSPVLRLSNLDPGNYSFRLTVTDSDGA 478
Cdd:cd00146      1 PTASVSAPPVAELGASVTfSA-----SDSSGGSIVSYKWDFGDGEVS----SSGEPTVTHTYTKPGTYTVTLTVTNAVGS 71

                           90
                   ....*....|
gi 1179685317  479 TNSTTAALIV 488
Cdd:cd00146     72 SSTKTTTVVV 81
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 495-584 1.94e-06

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 46.88  E-value: 1.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  495 PPVANAGPNHTITLPQnSITLNGNQSSD-DHQIVLYEWSLGPGSEG-----KHVvmqgvqtpYlhlsaMQEGDYTFQLKV 568
Cdd:pfam18911    3 APVADAGGDRIVAEGE-TVTFDASASDDpDGDILSYRWDFGDGTTAtganvSHT--------Y-----AAPGTYTVTLTV 68

                           90
                   ....*....|....*..
gi 1179685317  569 TDSS-RQQSTAVVTVIV 584
Cdd:pfam18911   69 TDDSgASNSTATDTVTV 85
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 683-775 2.32e-06

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 46.49  E-value: 2.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  683 NSPPRARAGGRhVLVLPNNSITLDGSRSTD-DQRIVSYLWirdgqspaagDVIDGSdhsvALQLTNLV-----EGVYTFH 756
Cdd:pfam18911    1 NAAPVADAGGD-RIVAEGETVTFDASASDDpDGDILSYRW----------DFGDGT----TATGANVShtyaaPGTYTVT 65

                           90       100
                   ....*....|....*....|
gi 1179685317  757 LRVTDSQGASD-TDTATVEV 775
Cdd:pfam18911   66 LTVTDDSGASNsTATDTVTV 85
PKD_4 pfam18911
PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.
 398-488 2.87e-06

PKD domain; This entry is composed of PKD domains found in bacterial surface proteins.


Pssm-ID: 436824 [Multi-domain]  Cd Length: 85  Bit Score: 46.11  E-value: 2.87e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  398 NLPPVAVVSPQlQELTLPLTSALiDGSQSTD-DTEIVSYHWEEINGpfieekTSVDSPVLRLSNLDPGNYSFRLTVTDSD 476
Cdd:pfam18911    1 NAAPVADAGGD-RIVAEGETVTF-DASASDDpDGDILSYRWDFGDG------TTATGANVSHTYAAPGTYTVTLTVTDDS 72

                           90
                   ....*....|...
gi 1179685317  477 GATNST-TAALIV 488
Cdd:pfam18911   73 GASNSTaTDTVTV 85
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
448-785 6.85e-05

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 46.92  E-value: 6.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  448 KTSVDSPVLRLSNLDPGN-YSFRLTVTDSDGATNSTTAALIVNNAVdyPPVANAGPNHTITLPqNSITLNGnQSSDDHQI 526
Cdd:COG3401    186 TVTSTTLVDGGGDIEPGTtYYYRVAATDTGGESAPSNEVSVTTPTT--PPSAPTGLTATADTP-GSVTLSW-DPVTESDA 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  527 VLYEWSLGPGSEGKHVVMQGVQ-TPYLHLSAMQEGDYTFQLKVTDSSRQQSTAVVTVIVQPENNrPPVAVAGPdkelifp 605
Cdd:COG3401    262 TGYRVYRSNSGDGPFTKVATVTtTSYTDTGLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLT-PPAAPSGL------- 333

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  606 veSATLDGSSS-------SDDHGIVFYH---WEHVRGPSAVEMENIDKAIATVTGLQVG-TYHFRLTVKDQQGLSSTSTL 674
Cdd:COG3401    334 --TATAVGSSSitlswtaSSDADVTGYNvyrSTSGGGTYTKIAETVTTTSYTDTGLTPGtTYYYKVTAVDAAGNESAPSE 411

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  675 TVAVKKENNsPPRARAGGRHVLVLPNNSITLDGSRSTDDQRIVSYLWIRDGQSPAAGDVIDGSDHSVALQLTNLVEGVYT 754
Cdd:COG3401    412 EVSATTASA-ASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLS 490

                          330       340       350
                   ....*....|....*....|....*....|.
gi 1179685317  755 FHLRVTDSQGASDTDTATVEVQPDPRKSGLV 785
Cdd:COG3401    491 VTTGSLVGGSGASSVTNSVSVIGASAAAAVG 521
MANEC pfam07502
MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the ...
 56-87 6.45e-04

MANEC domain; This region of similarity, comprising 8 conserved cysteines, is found in the N-terminal region of several membrane-associated and extracellular proteins. Although formerly called MANSC (for motif at N terminus with seven cysteines) it has now been renamed by MANEC (motif at N terminus with eight cysteines) by Richard Mitter and Stephen Fitzgerald after the discovery of an eighth conserved cysteine. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors.


Pssm-ID: 462186  Cd Length: 90  Bit Score: 39.60  E-value: 6.45e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1179685317   56 DCTAACCDLSSCDLAwWFE---------GRCYLVSCPHKEN 87
Cdd:pfam07502   38 DCVRACCSTPRCNLA-VFEerpggedaiPSCYLFNCLYPSR 77
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 365-592 6.54e-04

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 43.92  E-value: 6.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  365 LSVGLYVFKVTVSSENA--FGEGFVNVTVKPARRVnlPPVAVVSPQLQELTLPLtsaLIDGSQSTD------DTEIVSYH 436
Cdd:TIGR00864 2219 LAAGHYCFVFSLSFEDTplKKAACANLGVAAARLM--PIIEGGSYRVWSDTQDL---QLDAEESYDpnldddDQSLLHFH 2293

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  437 WEEINGPFIEEKTSV-------DSPVLRL--SNLDPG-NYSFRLTVTDSDGATNSTTAALIVNNA---VDYPPVANAGPN 503
Cdd:TIGR00864 2294 WACQASSKGEAGCCAlnfglggKGPTLGIpgEELAAGiEYTFKLSIGKAGMKEEATNQTVLIQSGhipIVSLECVSCKAQ 2373

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  504 HTITLPQNS-ITLNG---NQSSDDHQ------------IVLYEWSLGPGSEGKHVVM-QGVqtpyLHLSamqEGdYTFQL 566
Cdd:TIGR00864 2374 ALYEVSQNSyVYLEGrclNCQSGFHRgrwaartfqndtLVLDESSTSTGSAGMNLVLrQGV----LHDG---EG-YNFTL 2445

                          250       260
                   ....*....|....*....|....*.
gi 1179685317  567 KVTDSSRQQSTAvVTVIVQPenNRPP 592
Cdd:TIGR00864 2446 HVLDDSGDEEGA-ASIRLHH--NMPP 2468
PARM pfam17061
PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present ...
 202-333 8.31e-04

PARM; Human PARM-1 is a mucin-like, androgen-regulated transmembrane protein that is present in most tissues, with high levels in the heart, kidney and placenta. It has been shown to be induced and expressed in prostate after castration and may have a role in cell proliferation and immortalization in prostate cancer.


Pssm-ID: 465341 [Multi-domain]  Cd Length: 296  Bit Score: 42.54  E-value: 8.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  202 SPAVPAE-TQQDPELHYL------NESASTPA---PKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMP 271
Cdd:pfam17061   78 SPASNWEgTSTDPSPPGLsptssgVHLTPTPEehsSGTPETSVPATGSQSPAESPTLTSPQAPASSPSSPSTSPPEVSSA 157

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1179685317  272 SHSLPPASLELSSvtvEKSPVLTvTPGS--TEHSIPTPPTSAAPSESTPSElPISPTTAPRTET 333
Cdd:pfam17061  158 SVTTNHSSTETST---QPTGAPT-TPESptEEHSSGHTPTSHATSEPVPTE-TTPQTTVPSKVT 216
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 170-336 1.91e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.22  E-value: 1.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  170 PSGKQEPRGSAEYTDWGLLP---GSEGAFNSSVGDSPAVPAETQQDPelhyLNESASTPAPKLPERsvllPLPTTPSSGe 246
Cdd:PLN03209   324 PSQRVPPKESDAADGPKPVPtkpVTPEAPSPPIEEEPPQPKAVVPRP----LSPYTAYEDLKPPTS----PIPTPPSSS- 394

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1179685317  247 vleKEKASQLQEQSSNSSGKevLMPSHSLPPASLELSSVTVEKSPVLTVTPGSTEHSI-------PTPPTSAAPSESTPS 319
Cdd:PLN03209   395 ---PASSKSVDAVAKPAEPD--VVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLkpptspsPTAPTGVSPSVSSTS 469

                          170
                   ....*....|....*..
gi 1179685317  320 ELPISPTTAPRTETTYN 336
Cdd:PLN03209   470 SVPAVPDTAPATAATDA 486
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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