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Conserved domains on  [gi|1195569770|ref|NP_001338623|]
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pleckstrin homology domain-containing family G member 2 isoform 3 [Homo sapiens]

Protein Classification

pleckstrin homology domain-containing family G protein( domain architecture ID 10457355)

pleckstrin homology (PH) domain-containing family G protein contains PH and RhoGEF domains and may function as a guanine nucleotide exchange factor; similar to Homo sapiens pleckstrin homology domain-containing family G members 1/2/3 (PLEKHG1/2/3) that are involved in the regulation of Rho protein signal transduction

Gene Ontology:  GO:0005085|GO:0051056
PubMed:  11738596

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH_PLEKHG1_G2_G3 cd13243
Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) ...
263-413 1.36e-63

Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain; PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 270063 [Multi-domain]  Cd Length: 147  Bit Score: 205.28  E-value: 1.36e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 263 REMVEEAIVSMTAVAWYINDMKRKQEHAARLQEVQRRLGGWTGPELSAFGELVLEgafrggGGGGPRLRGGERLLFLFSR 342
Cdd:cd13243     1 RSVVEEALDTMTQVAWHINDMKRKHEHAVRVQEIQSLLDGWEGPELTTYGDLVLE------GTFRMAGAKNERLLFLFDK 74
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1195569770 343 MLLVAKRR-GLEYTYKGHIFCCNLSVSES-PRDPLGFKVSDLTIPKHRHLLQAKNQEEKRLWIHCLQRLFFEN 413
Cdd:cd13243    75 MLLITKKReDGILQYKTHIMCSNLMLSESiPKEPLSFQVLPFDNPKLQYTLQAKNQEQKRLWTQEIKRLILEN 147
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
106-281 2.37e-52

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


:

Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 176.72  E-value: 2.37e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 106 VAREIVETERAYVRDLRSIVEDYLGPLLDggVLGLSVEQVGTLFANIEDIYEFS-SELLEDL-ENSSSAGGIAECFVQRS 183
Cdd:pfam00621   1 VIKELLQTERSYVRDLEILVEVFLPPNSK--PLSESEEEIKTIFSNIEEIYELHrQLLLEELlKEWISIQRIGDIFLKFA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 184 EDFDIYTLYCMNYPSSLALLRELSLSPPA-ALWLQERQAQLR-HSLPLQSFLLKPVQRILKYHLLLQELGKHWAegPGTG 261
Cdd:pfam00621  79 PGFKVYSTYCSNYPKALKLLKKLLKKNPKfRAFLEELEANPEcRGLDLNSFLIKPVQRIPRYPLLLKELLKHTP--PDHP 156
                         170       180
                  ....*....|....*....|
gi 1195569770 262 GREMVEEAIVSMTAVAWYIN 281
Cdd:pfam00621 157 DYEDLKKALEAIKEVAKQIN 176
 
Name Accession Description Interval E-value
PH_PLEKHG1_G2_G3 cd13243
Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) ...
263-413 1.36e-63

Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain; PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270063 [Multi-domain]  Cd Length: 147  Bit Score: 205.28  E-value: 1.36e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 263 REMVEEAIVSMTAVAWYINDMKRKQEHAARLQEVQRRLGGWTGPELSAFGELVLEgafrggGGGGPRLRGGERLLFLFSR 342
Cdd:cd13243     1 RSVVEEALDTMTQVAWHINDMKRKHEHAVRVQEIQSLLDGWEGPELTTYGDLVLE------GTFRMAGAKNERLLFLFDK 74
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1195569770 343 MLLVAKRR-GLEYTYKGHIFCCNLSVSES-PRDPLGFKVSDLTIPKHRHLLQAKNQEEKRLWIHCLQRLFFEN 413
Cdd:cd13243    75 MLLITKKReDGILQYKTHIMCSNLMLSESiPKEPLSFQVLPFDNPKLQYTLQAKNQEQKRLWTQEIKRLILEN 147
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
106-281 2.37e-52

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 176.72  E-value: 2.37e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 106 VAREIVETERAYVRDLRSIVEDYLGPLLDggVLGLSVEQVGTLFANIEDIYEFS-SELLEDL-ENSSSAGGIAECFVQRS 183
Cdd:pfam00621   1 VIKELLQTERSYVRDLEILVEVFLPPNSK--PLSESEEEIKTIFSNIEEIYELHrQLLLEELlKEWISIQRIGDIFLKFA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 184 EDFDIYTLYCMNYPSSLALLRELSLSPPA-ALWLQERQAQLR-HSLPLQSFLLKPVQRILKYHLLLQELGKHWAegPGTG 261
Cdd:pfam00621  79 PGFKVYSTYCSNYPKALKLLKKLLKKNPKfRAFLEELEANPEcRGLDLNSFLIKPVQRIPRYPLLLKELLKHTP--PDHP 156
                         170       180
                  ....*....|....*....|
gi 1195569770 262 GREMVEEAIVSMTAVAWYIN 281
Cdd:pfam00621 157 DYEDLKKALEAIKEVAKQIN 176
RhoGEF smart00325
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange ...
106-282 7.25e-49

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.


Pssm-ID: 214619 [Multi-domain]  Cd Length: 180  Bit Score: 167.48  E-value: 7.25e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  106 VAREIVETERAYVRDLRSIVEDYLGPLLDGGVLgLSVEQVGTLFANIEDIYEFSSELLEDLENSSSAGG-----IAECFV 180
Cdd:smart00325   1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKL-LSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDdsverIGDVFL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  181 QRSEDFDIYTLYCMNYPSSLALLRELSLSPPAALWLQERQAQLRH-SLPLQSFLLKPVQRILKYHLLLQELGKHWAEGPG 259
Cdd:smart00325  80 KLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCrRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHE 159
                          170       180
                   ....*....|....*....|...
gi 1195569770  260 TggREMVEEAIVSMTAVAWYIND 282
Cdd:smart00325 160 D--REDLKKALKAIKELANQVNE 180
RhoGEF cd00160
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous ...
105-281 3.81e-47

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 238091 [Multi-domain]  Cd Length: 181  Bit Score: 162.85  E-value: 3.81e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 105 RVAREIVETERAYVRDLRSIVEDYLGPLLDGGvLGLSVEQVGTLFANIEDIYEFSSELLEDLENS-----SSAGGIAECF 179
Cdd:cd00160     3 EVIKELLQTERNYVRDLKLLVEVFLKPLDKEL-LPLSPEEVELLFGNIEEIYEFHRIFLKSLEERveewdKSGPRIGDVF 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 180 VQRSEDFDIYTLYCMNYPSSLALLRELSlspPAALWLQERQAQLR---HSLPLQSFLLKPVQRILKYHLLLQELGKHWAE 256
Cdd:cd00160    82 LKLAPFFKIYSEYCSNHPDALELLKKLK---KFNKFFQEFLEKAEsecGRLKLESLLLKPVQRLTKYPLLLKELLKHTPD 158
                         170       180
                  ....*....|....*....|....*
gi 1195569770 257 GPgtGGREMVEEAIVSMTAVAWYIN 281
Cdd:cd00160   159 GH--EDREDLKKALEAIKEVASQVN 181
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
337-409 4.22e-07

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 48.31  E-value: 4.22e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  337 LFLFSRMLLVAKRR--GLEYTYKGHIFCCNLSVSESPR-----DPLGFKVSdlTIPKHRHLLQAKNQEEKRLWIHCLQRL 409
Cdd:smart00233  23 FVLFNSTLLYYKSKkdKKSYKPKGSIDLSGCTVREAPDpdsskKPHCFEIK--TSDRKTLLLQAESEEEREKWVEALRKA 100
ROM1 COG5422
RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction ...
109-270 5.40e-07

RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms];


Pssm-ID: 227709 [Multi-domain]  Cd Length: 1175  Bit Score: 52.97  E-value: 5.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  109 EIVETERAYVRDLRSIVEDYLGPLLDGGVLGLSVEQ--VGTLFANIEDIYEFSSELLEDLEN----SSSAGGIAECFVQR 182
Cdd:COG5422    491 EVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRnfIKHVFANINEIYAVNSKLLKALTNrqclSPIVNGIADIFLDY 570
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  183 SEDFDIYTLYCMNYPSSLALL-RELSLSPPAALWLQERQaQLRHSLP--LQSFLLKPVQRILKYHLLLQELGKHwaEGPG 259
Cdd:COG5422    571 VPKFEPFIKYGASQPYAKYEFeREKSVNPNFARFDHEVE-RLDESRKleLDGYLTKPTTRLARYPLLLEEVLKF--TDPD 647
                          170
                   ....*....|.
gi 1195569770  260 TGGREMVEEAI 270
Cdd:COG5422    648 NPDTEDIPKVI 658
PH pfam00169
PH domain; PH stands for pleckstrin homology.
337-409 6.17e-05

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 42.16  E-value: 6.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 337 LFLFSRMLLV--AKRRGLEYTYKGHIF-----CCNLSVSESPRDPLGFKV-SDLTIPKHRHLLQAKNQEEKRLWIHCLQR 408
Cdd:pfam00169  23 FVLFDGSLLYykDDKSGKSKEPKGSISlsgceVVEVVASDSPKRKFCFELrTGERTGKRTYLLQAESEEERKDWIKAIQS 102

                  .
gi 1195569770 409 L 409
Cdd:pfam00169 103 A 103
 
Name Accession Description Interval E-value
PH_PLEKHG1_G2_G3 cd13243
Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) ...
263-413 1.36e-63

Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain; PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270063 [Multi-domain]  Cd Length: 147  Bit Score: 205.28  E-value: 1.36e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 263 REMVEEAIVSMTAVAWYINDMKRKQEHAARLQEVQRRLGGWTGPELSAFGELVLEgafrggGGGGPRLRGGERLLFLFSR 342
Cdd:cd13243     1 RSVVEEALDTMTQVAWHINDMKRKHEHAVRVQEIQSLLDGWEGPELTTYGDLVLE------GTFRMAGAKNERLLFLFDK 74
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1195569770 343 MLLVAKRR-GLEYTYKGHIFCCNLSVSES-PRDPLGFKVSDLTIPKHRHLLQAKNQEEKRLWIHCLQRLFFEN 413
Cdd:cd13243    75 MLLITKKReDGILQYKTHIMCSNLMLSESiPKEPLSFQVLPFDNPKLQYTLQAKNQEQKRLWTQEIKRLILEN 147
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
106-281 2.37e-52

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 176.72  E-value: 2.37e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 106 VAREIVETERAYVRDLRSIVEDYLGPLLDggVLGLSVEQVGTLFANIEDIYEFS-SELLEDL-ENSSSAGGIAECFVQRS 183
Cdd:pfam00621   1 VIKELLQTERSYVRDLEILVEVFLPPNSK--PLSESEEEIKTIFSNIEEIYELHrQLLLEELlKEWISIQRIGDIFLKFA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 184 EDFDIYTLYCMNYPSSLALLRELSLSPPA-ALWLQERQAQLR-HSLPLQSFLLKPVQRILKYHLLLQELGKHWAegPGTG 261
Cdd:pfam00621  79 PGFKVYSTYCSNYPKALKLLKKLLKKNPKfRAFLEELEANPEcRGLDLNSFLIKPVQRIPRYPLLLKELLKHTP--PDHP 156
                         170       180
                  ....*....|....*....|
gi 1195569770 262 GREMVEEAIVSMTAVAWYIN 281
Cdd:pfam00621 157 DYEDLKKALEAIKEVAKQIN 176
RhoGEF smart00325
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange ...
106-282 7.25e-49

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.


Pssm-ID: 214619 [Multi-domain]  Cd Length: 180  Bit Score: 167.48  E-value: 7.25e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  106 VAREIVETERAYVRDLRSIVEDYLGPLLDGGVLgLSVEQVGTLFANIEDIYEFSSELLEDLENSSSAGG-----IAECFV 180
Cdd:smart00325   1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKL-LSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDdsverIGDVFL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  181 QRSEDFDIYTLYCMNYPSSLALLRELSLSPPAALWLQERQAQLRH-SLPLQSFLLKPVQRILKYHLLLQELGKHWAEGPG 259
Cdd:smart00325  80 KLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCrRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHE 159
                          170       180
                   ....*....|....*....|...
gi 1195569770  260 TggREMVEEAIVSMTAVAWYIND 282
Cdd:smart00325 160 D--REDLKKALKAIKELANQVNE 180
RhoGEF cd00160
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous ...
105-281 3.81e-47

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 238091 [Multi-domain]  Cd Length: 181  Bit Score: 162.85  E-value: 3.81e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 105 RVAREIVETERAYVRDLRSIVEDYLGPLLDGGvLGLSVEQVGTLFANIEDIYEFSSELLEDLENS-----SSAGGIAECF 179
Cdd:cd00160     3 EVIKELLQTERNYVRDLKLLVEVFLKPLDKEL-LPLSPEEVELLFGNIEEIYEFHRIFLKSLEERveewdKSGPRIGDVF 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 180 VQRSEDFDIYTLYCMNYPSSLALLRELSlspPAALWLQERQAQLR---HSLPLQSFLLKPVQRILKYHLLLQELGKHWAE 256
Cdd:cd00160    82 LKLAPFFKIYSEYCSNHPDALELLKKLK---KFNKFFQEFLEKAEsecGRLKLESLLLKPVQRLTKYPLLLKELLKHTPD 158
                         170       180
                  ....*....|....*....|....*
gi 1195569770 257 GPgtGGREMVEEAIVSMTAVAWYIN 281
Cdd:cd00160   159 GH--EDREDLKKALEAIKEVASQVN 181
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
337-409 4.22e-07

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 48.31  E-value: 4.22e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  337 LFLFSRMLLVAKRR--GLEYTYKGHIFCCNLSVSESPR-----DPLGFKVSdlTIPKHRHLLQAKNQEEKRLWIHCLQRL 409
Cdd:smart00233  23 FVLFNSTLLYYKSKkdKKSYKPKGSIDLSGCTVREAPDpdsskKPHCFEIK--TSDRKTLLLQAESEEEREKWVEALRKA 100
ROM1 COG5422
RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction ...
109-270 5.40e-07

RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms];


Pssm-ID: 227709 [Multi-domain]  Cd Length: 1175  Bit Score: 52.97  E-value: 5.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  109 EIVETERAYVRDLRSIVEDYLGPLLDGGVLGLSVEQ--VGTLFANIEDIYEFSSELLEDLEN----SSSAGGIAECFVQR 182
Cdd:COG5422    491 EVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRnfIKHVFANINEIYAVNSKLLKALTNrqclSPIVNGIADIFLDY 570
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770  183 SEDFDIYTLYCMNYPSSLALL-RELSLSPPAALWLQERQaQLRHSLP--LQSFLLKPVQRILKYHLLLQELGKHwaEGPG 259
Cdd:COG5422    571 VPKFEPFIKYGASQPYAKYEFeREKSVNPNFARFDHEVE-RLDESRKleLDGYLTKPTTRLARYPLLLEEVLKF--TDPD 647
                          170
                   ....*....|.
gi 1195569770  260 TGGREMVEEAI 270
Cdd:COG5422    648 NPDTEDIPKVI 658
PH cd00821
Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are ...
337-406 1.19e-05

Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 275388 [Multi-domain]  Cd Length: 92  Bit Score: 44.07  E-value: 1.19e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1195569770 337 LFLFSRMLLVAK-RRGLEYTYKGHIF---CCNLSVSESPRDPLGFKvsdLTIPKHRHL-LQAKNQEEKRLWIHCL 406
Cdd:cd00821    21 FVLFEGVLLYYKsKKDSSYKPKGSIPlsgILEVEEVSPKERPHCFE---LVTPDGRTYyLQADSEEERQEWLKAL 92
PH_Collybistin_ASEF cd01224
Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain; ...
288-408 1.22e-05

Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain; Collybistin (also called PEM2) is homologous to the Dbl proteins ASEF (also called ARHGEF4/RhoGEF4) and SPATA13 (Spermatogenesis-associated protein 13; also called ASEF2). It activates CDC42 specifically and not any other Rho-family GTPases. Collybistin consists of an SH3 domain, followed by a RhoGEF/DH and PH domain. In Dbl proteins, the DH and PH domains catalyze the exchange of GDP for GTP in Rho GTPases, allowing them to signal to downstream effectors. It induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin, which is thought to form a scaffold underneath the postsynaptic membrane linking receptors to the cytoskeleton. It also acts as a tumor suppressor that links adenomatous polyposis coli (APC) protein, a negative regulator of the Wnt signaling pathway and promotes the phosphorylation and degradation of beta-catenin, to Cdc42. Autoinhibition of collybistin is accomplished by the binding of its SH3 domain with both the RhoGEF and PH domains to block access of Cdc42 to the GTPase-binding site. Inactivation promotes cancer progression. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 269931  Cd Length: 138  Bit Score: 45.33  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 288 EHAARLQEVQRRLGGWTGPELSafgELVLEGAFRGGGGGGPRLRGGERLLFLFSRMLLVAKR---RGLEYTYKGHIFCCN 364
Cdd:cd01224     2 ENLEKLAAWQSTVEGWEGEDLS---DRSSELIHSGELTKISAGRAQERTFFLFDHQLVYCKKdllRRKNYIYKGRIDTDN 78
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1195569770 365 LSVsESPRD--------PL--GFKVSDLTIPKHrHLLQAKNQEEKRLWIHCLQR 408
Cdd:cd01224    79 MEI-EDLPDgkddesgvTVknAWKIYNASKNKW-YVLCAKSAEEKQRWLEAFAE 130
PH pfam00169
PH domain; PH stands for pleckstrin homology.
337-409 6.17e-05

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 42.16  E-value: 6.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 337 LFLFSRMLLV--AKRRGLEYTYKGHIF-----CCNLSVSESPRDPLGFKV-SDLTIPKHRHLLQAKNQEEKRLWIHCLQR 408
Cdd:pfam00169  23 FVLFDGSLLYykDDKSGKSKEPKGSISlsgceVVEVVASDSPKRKFCFELrTGERTGKRTYLLQAESEEERKDWIKAIQS 102

                  .
gi 1195569770 409 L 409
Cdd:pfam00169 103 A 103
PH2_Kalirin_Trio_p63RhoGEF cd13241
p63RhoGEF pleckstrin homology (PH) domain, repeat 2; The guanine nucleotide exchange factor ...
338-409 2.24e-04

p63RhoGEF pleckstrin homology (PH) domain, repeat 2; The guanine nucleotide exchange factor p63RhoGEF is an effector of the heterotrimeric G protein, Galphaq and linking Galphaq-coupled receptors (GPCRs) to the activation of RhoA. The Dbl(DH) and PH domains of p63RhoGEF interact with the effector-binding site and the C-terminal region of Galphaq and appear to relieve autoinhibition of the catalytic DH domain by the PH domain. Trio, Duet, and p63RhoGEF are shown to constitute a family of Galphaq effectors that appear to activate RhoA both in vitro and in intact cells. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. Trio plays an essential role in regulating the actin cytoskeleton during axonal guidance and branching. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270061  Cd Length: 140  Bit Score: 41.48  E-value: 2.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195569770 338 FLFSRMLLVA----KRRGLE---YTYKGHIFCCNLSVSES-PRDPLGF--KVSDLTIPKHRHLLQAKNQEEKRLWIHCLQ 407
Cdd:cd13241    42 FLFEQIIIFSeilgKKTQFSnpgYIYKNHIKVNKMSLEENvDGDPLRFalKSRDPNNPSETFILQAASPEVRQEWVDTIN 121

                  ..
gi 1195569770 408 RL 409
Cdd:cd13241   122 QI 123
PH1_FDG_family cd13328
FYVE, RhoGEF and PH domain containing/faciogenital dysplasia family proteins, N-terminal ...
337-406 1.24e-03

FYVE, RhoGEF and PH domain containing/faciogenital dysplasia family proteins, N-terminal Pleckstrin homology (PH) domain; In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Mutations in the FGD1 gene are responsible for the X-linked disorder known as faciogenital dysplasia (FGDY). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 275410  Cd Length: 92  Bit Score: 38.24  E-value: 1.24e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1195569770 337 LFLFSRMLL--VAKRRGL--EYTYKGHIFCCNLSVSES--PRDPLGFKVSDltipKHRHL-LQAKNQEEKRLWIHCL 406
Cdd:cd13328    20 LFLFNDMLLycVPKLSLVgqKFSVRNRLDVAGMKVREPvnENYPHTFKISG----KERSLeLQASSAEEKDEWIQAI 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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