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Conserved domains on  [gi|1199795624|ref|NP_001338876|]
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olfactomedin-4 precursor [Mus musculus]

Protein Classification

olfactomedin domain-containing protein( domain architecture ID 10490292)

olfactomedin domain-containing protein adopts a five-bladed beta-propeller structure, similar to gliomedin that interacts with neuronal cell adhesion molecules such as neurofascin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
243-497 1.93e-114

Olfactomedin-like domain;


:

Pssm-ID: 460482  Cd Length: 246  Bit Score: 337.97  E-value: 1.93e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 243 VVNISAPSVIQLNWlgfsYKYGAWGRDysPQHPERTLYWVAplntDARALEYYRLYDSLDNLLIYSHFRDYRIRY-GQGG 321
Cdd:pfam02191   1 LVSVSKPVTVKLSG----GKYGAWMKD--PLPPSDKIYVTD----RGTSGNTLREYASLDDFKNGSPSKKYKLPYpWQGT 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 322 GTVAFNNNLYVNWYNGGNIAKINLTTNVVDVNRPLPLAAYNNRFSYANVNWQDIDLAVDEQALWAIYATEASTGNIVISK 401
Cdd:pfam02191  71 GHVVYNGSLYYNKYNSRNIVKYDLTTRTVAARRVLPGAGYNNRFPYSWGGHTDIDLAVDENGLWVIYATEENEGNIVVSK 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 402 LNDTTLEVISTWVTKQYKPSVSNAFMVCGVLYATRTLNTKTEEIFYYYDTNTEREGNLGITMRKMQERIQSINYHPFDQK 481
Cdd:pfam02191 151 LDPETLEVEQTWNTSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKK 230

                         250
                  ....*....|....*.
gi 1199795624 482 LYVYNDGYLLNYDLVF 497
Cdd:pfam02191 231 LYAWDDGYQVTYPVTF 246
 
Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
243-497 1.93e-114

Olfactomedin-like domain;


Pssm-ID: 460482  Cd Length: 246  Bit Score: 337.97  E-value: 1.93e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 243 VVNISAPSVIQLNWlgfsYKYGAWGRDysPQHPERTLYWVAplntDARALEYYRLYDSLDNLLIYSHFRDYRIRY-GQGG 321
Cdd:pfam02191   1 LVSVSKPVTVKLSG----GKYGAWMKD--PLPPSDKIYVTD----RGTSGNTLREYASLDDFKNGSPSKKYKLPYpWQGT 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 322 GTVAFNNNLYVNWYNGGNIAKINLTTNVVDVNRPLPLAAYNNRFSYANVNWQDIDLAVDEQALWAIYATEASTGNIVISK 401
Cdd:pfam02191  71 GHVVYNGSLYYNKYNSRNIVKYDLTTRTVAARRVLPGAGYNNRFPYSWGGHTDIDLAVDENGLWVIYATEENEGNIVVSK 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 402 LNDTTLEVISTWVTKQYKPSVSNAFMVCGVLYATRTLNTKTEEIFYYYDTNTEREGNLGITMRKMQERIQSINYHPFDQK 481
Cdd:pfam02191 151 LDPETLEVEQTWNTSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKK 230

                         250
                  ....*....|....*.
gi 1199795624 482 LYVYNDGYLLNYDLVF 497
Cdd:pfam02191 231 LYAWDDGYQVTYPVTF 246
OLF smart00284
Olfactomedin-like domains;
241-497 1.77e-82

Olfactomedin-like domains;


Pssm-ID: 128580  Cd Length: 255  Bit Score: 256.30  E-value: 1.77e-82
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624  241 GGVVNISAPSVIQLNWLGfsyKYGAWGRDYSPQHPERTLYWVAPLNTdaRALEYYRLYDSLDNLLIYSHFRDYRIRY-GQ 319
Cdd:smart00284   1 GGLAGISKPVTLQTSWKG---KSGAWMKDPLWNTTKKSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHaGQ 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624  320 GGGTVAFNNNLYVNWYNGGNIAKINLTTNVVDVNRPLPLAAYNNRFSYANVNWQDIDLAVDEQALWAIYATEASTGNIVI 399
Cdd:smart00284  76 GTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVI 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624  400 SKLNDTTLEVISTWVTKQYKPSVSNAFMVCGVLYATRTLNTKTEEIFYYYDTNTEREGNLGITMRKMQERIQSINYHPFD 479
Cdd:smart00284 156 SKLNPATLTIENTWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPND 235

                          250
                   ....*....|....*...
gi 1199795624  480 QKLYVYNDGYLLNYDLVF 497
Cdd:smart00284 236 RKLYAWNNGHLVHYDIAL 253
 
Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
243-497 1.93e-114

Olfactomedin-like domain;


Pssm-ID: 460482  Cd Length: 246  Bit Score: 337.97  E-value: 1.93e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 243 VVNISAPSVIQLNWlgfsYKYGAWGRDysPQHPERTLYWVAplntDARALEYYRLYDSLDNLLIYSHFRDYRIRY-GQGG 321
Cdd:pfam02191   1 LVSVSKPVTVKLSG----GKYGAWMKD--PLPPSDKIYVTD----RGTSGNTLREYASLDDFKNGSPSKKYKLPYpWQGT 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 322 GTVAFNNNLYVNWYNGGNIAKINLTTNVVDVNRPLPLAAYNNRFSYANVNWQDIDLAVDEQALWAIYATEASTGNIVISK 401
Cdd:pfam02191  71 GHVVYNGSLYYNKYNSRNIVKYDLTTRTVAARRVLPGAGYNNRFPYSWGGHTDIDLAVDENGLWVIYATEENEGNIVVSK 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624 402 LNDTTLEVISTWVTKQYKPSVSNAFMVCGVLYATRTLNTKTEEIFYYYDTNTEREGNLGITMRKMQERIQSINYHPFDQK 481
Cdd:pfam02191 151 LDPETLEVEQTWNTSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKK 230

                         250
                  ....*....|....*.
gi 1199795624 482 LYVYNDGYLLNYDLVF 497
Cdd:pfam02191 231 LYAWDDGYQVTYPVTF 246
OLF smart00284
Olfactomedin-like domains;
241-497 1.77e-82

Olfactomedin-like domains;


Pssm-ID: 128580  Cd Length: 255  Bit Score: 256.30  E-value: 1.77e-82
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624  241 GGVVNISAPSVIQLNWLGfsyKYGAWGRDYSPQHPERTLYWVAPLNTdaRALEYYRLYDSLDNLLIYSHFRDYRIRY-GQ 319
Cdd:smart00284   1 GGLAGISKPVTLQTSWKG---KSGAWMKDPLWNTTKKSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHaGQ 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624  320 GGGTVAFNNNLYVNWYNGGNIAKINLTTNVVDVNRPLPLAAYNNRFSYANVNWQDIDLAVDEQALWAIYATEASTGNIVI 399
Cdd:smart00284  76 GTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVI 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199795624  400 SKLNDTTLEVISTWVTKQYKPSVSNAFMVCGVLYATRTLNTKTEEIFYYYDTNTEREGNLGITMRKMQERIQSINYHPFD 479
Cdd:smart00284 156 SKLNPATLTIENTWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPND 235

                          250
                   ....*....|....*...
gi 1199795624  480 QKLYVYNDGYLLNYDLVF 497
Cdd:smart00284 236 RKLYAWNNGHLVHYDIAL 253
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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