|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
3.16e-29 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 111.60 E-value: 3.16e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 13 LDAEFDHFVVDMKPFVLKLPHRTERQRCALWIRKLCEPSGTgagIMGRKNRNLYAKLLLHMLKRGALEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 1212619496 93 KILPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
301-933 |
1.69e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 301 YRSKQHETEetiRKLEKkVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndweKKLHNAVAEMEQEKFDLQKQHTEN 380
Cdd:COG1196 170 YKERKEEAE---RKLEA-TEENLERLEDILGELERQLEPLERQAEKAERY------RELKEELKELEAELLLLKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 381 IQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRN 460
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 461 TLHKEKDHLVNDYEQNmkllqtkyDADINLLKQEHALSASKASSMIEELEQnvcqLKQQLQESELQRKQQLRDQENKFQM 540
Cdd:COG1196 320 ELEEELAELEEELEEL--------EEELEELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 541 EKSHLKHIYEKKAHDLQSE-LDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYA 619
Cdd:COG1196 388 LLEALRAAAELAAQLEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 620 EMKEQMEKVEADLTRSKSLREKQSKEflWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIEN-LE 698
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLA 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 699 KQLRAANMEHEN----QIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELG---LLREEEKQRATREHEIVVN 771
Cdd:COG1196 546 AALQNIVVEDDEvaaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvasDLREADARYYVLGDTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 772 KLKAESEKMKIELKKTHAAEtemtlekanskLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQ 851
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGR-----------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 852 KFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASlRQELEDTISSLK 931
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEELERELERLE 773
|
..
gi 1212619496 932 SQ 933
Cdd:COG1196 774 RE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
558-876 |
4.66e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 4.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 558 SELDKGKEDTQKKihkfeeaLKEKEEQLTRVTEVQR-LQAQ------QADAAL-------EEFKRQVELNSEKvYAEMKE 623
Cdd:COG1196 168 SKYKERKEEAERK-------LEATEENLERLEDILGeLERQleplerQAEKAEryrelkeELKELEAELLLLK-LRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 624 QMEKVEADLTRSKSLREKQSKEF-LWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLR 702
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 703 AANMEHENQIQEfKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKI 782
Cdd:COG1196 320 ELEEELAELEEE-LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 783 ELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 862
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
330
....*....|....
gi 1212619496 863 DNDQAIKVLQDELE 876
Cdd:COG1196 479 LAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
253-937 |
2.28e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 253 REKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLY---RSKQHETEETIRKLEKKVQTL---IRDC 326
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLeelRLEVSELEEEIEELQKELYALaneISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 327 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNA--VAEMEQEKFDLQKQHT------ENIQELLEDTNVRLNKMESE 398
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAeeLAELEEKLEELKEELEsleaelEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 399 YMAQTQ---STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQI-----TCSELQEVKARRNTLHKEKDHLV 470
Cdd:TIGR02168 381 LETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaelkeLQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 471 NDYEQNMKLLQTKYDADINLLKQEHALSASKAS--SMIEELEQNVCQLKQQLQESE-----LQRKQQLRDQENKFQMEKS 543
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSleRLQENLEGFSEGVKALLKNQSglsgiLGVLSELISVDEGYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 544 -----HLKHI------YEKKAHDLQSELDKGK------------------EDTQKKIHKFEEALKEKEEQ---------- 584
Cdd:TIGR02168 541 aalggRLQAVvvenlnAAKKAIAFLKQNELGRvtflpldsikgteiqgndREILKNIEGFLGVAKDLVKFdpklrkalsy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 585 -LTRVTEVQRLQAQQADAALEEFK-RQVELNSEKVYA----------------EMKEQMEKVEADLTRSKSLREKQSKEf 646
Cdd:TIGR02168 621 lLGGVLVVDDLDNALELAKKLRPGyRIVTLDGDLVRPggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKA- 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 647 LWQLEDIRQRYEQQIVELKLEHEQekthLLQQHNAEKDSLVRdHEREIENLEKQLRAANMEHENQIQEFKKRDAQvIADM 726
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEE----LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEA 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 727 EAQVHKLREELINVNSQRKQQLVELGLLREE--EKQRATREHEIVVNKL--KAESEKMKIELKKTHAAETEMTLEKANSK 802
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREAldELRAELTLLNEEAANLreRLESLERRIAATERRLEDLEEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 803 LKQIEKEytqkLAKSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEkkqlIRDNDQAIKVLQDELENRSNQV 882
Cdd:TIGR02168 854 IESLAAE----IEELEELIEELESELEALLNERASLE-EALALLRSELEELSEE----LRELESKRSELRRELEELREKL 924
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 883 RCAEKKLQHKELESQEQITYIRQEYETKLKGLMP-----ASLRQELEDTISSLKSQVNFL 937
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAlenkiEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
247-935 |
4.23e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.84 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 247 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKIL-ERKNNEIEELKTLYRSKQHETEETIRKLEKKvqtlird 325
Cdd:pfam02463 187 ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKLNEERIDLLQELLRDEQEEIESSKQE------- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 326 cQVIRETKEDQIAELKKICEQSTESLNNDWEKK-LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQ 404
Cdd:pfam02463 260 -IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 405 STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKy 484
Cdd:pfam02463 339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 485 dADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 564
Cdd:pfam02463 418 -EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 565 EDTQK-----KIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEM-KEQMEKVEADLTRSKSL 638
Cdd:pfam02463 497 ERSQKeskarSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADeVEERQKLVRALTELPLG 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 639 REKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQiqeFKKR 718
Cdd:pfam02463 577 ARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR---KGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 719 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK 798
Cdd:pfam02463 654 LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 799 ANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENR 878
Cdd:pfam02463 734 INEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 813
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1212619496 879 SNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELEDTISSLKSQVN 935
Cdd:pfam02463 814 AELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
252-950 |
1.11e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.44 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 252 IREKELDMKTKMMEAKFHEEKL----KLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQ 327
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 328 VIRETKED-QIAELKKICEQstESLNNDWEKKLHNAVAEMEQE---KFDLQKQHTENIQELLEDTNVR-LNKMESEYMAQ 402
Cdd:pfam15921 188 EIRSILVDfEEASGKKIYEH--DSMSTMHFRSLGSAISKILREldtEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 403 TQSTNHMIKELEARVQQLTGEAE------NSNLQRQKLIQEKAELERC-YQITCSELQEVKARRNTLHKEKDHLVNDYEQ 475
Cdd:pfam15921 266 QDRIEQLISEHEVEITGLTEKASsarsqaNSIQSQLEIIQEQARNQNSmYMRQLSDLESTVSQLRSELREAKRMYEDKIE 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 476 NMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLR--DQENKFQMEKSHLKHIYEKKA 553
Cdd:pfam15921 346 ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTGNSITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 554 HDLQ---SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVqrlqAQQADAALEEFKRQVE-LNSEKVYAEmkeQMEKVE 629
Cdd:pfam15921 426 MEVQrleALLKAMKSECQGQMERQMAAIQGKNESLEKVSSL----TAQLESTKEMLRKVVEeLTAKKMTLE---SSERTV 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 630 ADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELK--------LEHEQEKTHLLQQHNAEKDSLVRDHEREIENLekql 701
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENM---- 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 702 raanmeheNQIQEFKKRDAQVIADMEAQVhklrEELINvnsQRKQQLVELGLLREEeKQRATREHEIVVNKLKAESEKmk 781
Cdd:pfam15921 575 --------TQLVGQHGRTAGAMQVEKAQL----EKEIN---DRRLELQEFKILKDK-KDAKIRELEARVSDLELEKVK-- 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 782 ielkkthaaetemtLEKANSKLKQIEKEYTQKlakSSQIIAELQTTISSLKEENSQQQLAaERRLQDVRQKFEDEKKQLi 861
Cdd:pfam15921 637 --------------LVNAGSERLRAVKDIKQE---RDQLLNEVKTSRNELNSLSEDYEVL-KRNFRNKSEEMETTTNKL- 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 862 rdnDQAIKVLQDELENRSNQVRCAEKKLQHK---ELESQEQITYIRQEYETKlkglmpASLRQELEDTISSLKSQVNFLQ 938
Cdd:pfam15921 698 ---KMQLKSAQSELEQTRNTLKSMEGSDGHAmkvAMGMQKQITAKRGQIDAL------QSKIQFLEEAMTNANKEKHFLK 768
|
730
....*....|..
gi 1212619496 939 KRASILQEELTT 950
Cdd:pfam15921 769 EEKNKLSQELST 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
415-954 |
3.98e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 3.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 415 ARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYeQNMKLLQTKYDADINLLKQE 494
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 495 HALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyeKKAHDLQSELDKGKEDTQKKIHKF 574
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL------EELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 575 EEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIR 654
Cdd:TIGR02168 385 RSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 655 QRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDhEREIENLEKQLRAAnMEHENQIQEFKKRDAQVI---ADMEAQ 729
Cdd:TIGR02168 461 EALEelREELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKAL-LKNQSGLSGILGVLSELIsvdEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 730 VHK-LREELINVNSQRKQQ-LVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK--------- 798
Cdd:TIGR02168 539 IEAaLGGRLQAVVVENLNAaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrkal 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 799 ---------------ANSKLKQIEKEYT-----------------------QKLAKSSQIIAELQTTISSL--KEENSQQ 838
Cdd:TIGR02168 619 syllggvlvvddldnALELAKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRREIEELEEKIEELeeKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 839 QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYiRQEYETKLKGLMPA- 917
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEEl 777
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1212619496 918 ----SLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 954
Cdd:TIGR02168 778 aeaeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
254-877 |
4.16e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 4.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 254 EKELDMKTKMMEAKFHEEKLKLQQKhdadvqkilERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETK 333
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEE---------ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 334 EDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEY-MAQTQSTNHMIKE 412
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 413 LEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYEQNMKLLQTKYDADINLLK 492
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 493 QEHALSASKASSMIEElEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIH 572
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 573 KfeealKEKEEQLTRVTEVQRLqaqqadaalEEFKRQVELNSEKvyaEMKEQMEKVEADLTRSKSLREKqskeflwqlED 652
Cdd:PTZ00121 1532 E-----AKKADEAKKAEEKKKA---------DELKKAEELKKAE---EKKKAEEAKKAEEDKNMALRKA---------EE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 653 IRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQlraaNMEHENQIQEFKKRDAQVIADMEAQVHK 732
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 733 LREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EY 810
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKeaEE 1741
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1212619496 811 TQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR-DNDQAIKVLQDELEN 877
Cdd:PTZ00121 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRmEVDKKIKDIFDNFAN 1809
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
272-824 |
8.51e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 8.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 272 KLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKIcEQSTESL 351
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL-ARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 352 NNDWEKKLHnavAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQR 431
Cdd:COG1196 305 ARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 432 QKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQ 511
Cdd:COG1196 382 EELAEELLEALR-------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 512 NVCQLKQQLQESELQRK--------QQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHK--FEEALKEK 581
Cdd:COG1196 455 EEEEEALLELLAELLEEaalleaalAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 582 EEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQI 661
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 662 VELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLE--KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELIN 739
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLegEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 740 VNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 819
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
....*
gi 1212619496 820 IIAEL 824
Cdd:COG1196 775 EIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
379-934 |
1.29e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 379 ENIQELLEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKAR 458
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 459 RNTLHKEKDHLvndyEQNMKLLQTKydadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK-QQLRDQENK 537
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEK--------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 538 FQMEKSHLKHIYEKKAHDLQ-------------SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE 604
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEerikeleekeerlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 605 EFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEkthLLQQHNAEKD 684
Cdd:PRK03918 388 KLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 685 SlVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQviadmeaqvHKLREELINVNSqrkqqlvELGLLREEEKQRATR 764
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKELEE-------KLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 765 EHEIV---VNKLKAESEKMKIELKKTHA-----AETEMTLEKANSKLKQIEKEYTQKLAKSsqiIAELQTTISSLKE--E 834
Cdd:PRK03918 526 EYEKLkekLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPfyN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 835 NSQQQLAAERRLQDVRQKFEDEKKQL--IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELEsqEQITYIRQEYETKLK 912
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELdkAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--EEYLELSRELAGLRA 680
|
570 580
....*....|....*....|...
gi 1212619496 913 GLMPA-SLRQELEDTISSLKSQV 934
Cdd:PRK03918 681 ELEELeKRREEIKKTLEKLKEEL 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
571-906 |
1.64e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 571 IHKFEEALKEKEEQLTRVTE-VQRLQAqqadaALEEFKRQV---ELNSEKV--YAEMKEQMEKVEADL--TRSKSLREKq 642
Cdd:TIGR02168 167 ISKYKERRKETERKLERTREnLDRLED-----ILNELERQLkslERQAEKAerYKELKAELRELELALlvLRLEELREE- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 643 skeflwqlediRQRYEQQIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEfkkrdaqv 722
Cdd:TIGR02168 241 -----------LEELQEELKEAEEELEELTAEL-----QELEEKLEELRLEVSELEEEIEELQKELYALANE-------- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 723 IADMEAQVHKLREELINVNSQRKQQLVELGLL--REEEKQRATREHEIVVNKLKAESEKMKIELKkthaaETEMTLEKAN 800
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELesKLDELAEELAELEEKLEELKEELESLEAELE-----ELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 801 SKLKQIEKEYTQKLAKSSQI---IAELQTTISSLKEENSQQQLAAERRLQ---DVRQKFEDEKKQLIRDNDQAIKVLQDE 874
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRERLQQeieELLKKLEEAELKELQAELEELEEELEE 451
|
330 340 350
....*....|....*....|....*....|..
gi 1212619496 875 LENRSNQVRCAEKKLQHKELESQEQITYIRQE 906
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERE 483
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
249-809 |
1.85e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 249 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 328
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 329 IRETkEDQIAELKKICEQSTESLNNDWEKK--LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQST 406
Cdd:COG1196 311 RREL-EERLEELEEELAELEEELEELEEELeeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 407 NHM--IKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEkdhlvndyEQNMKLLQTKY 484
Cdd:COG1196 390 EALraAAELAAQLEELEEAEEALLERLERLEEELEELEE-------ALAELEEEEEEEEEA--------LEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 485 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGK 564
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 565 EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSK 644
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 645 EFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIA 724
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 725 DMEAQVHKLREELiNVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKthAAETEMTLEKANSKLK 804
Cdd:COG1196 694 ELEEALLAEEEEE-RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE--ELPEPPDLEELERELE 770
|
....*
gi 1212619496 805 QIEKE 809
Cdd:COG1196 771 RLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
237-819 |
4.09e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 4.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 237 LRKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTL--YRSKQHETEETIRK 314
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 315 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQS-TESLNNDWEKKLHNAVAEMEQEKF---DLQKQHTENIQELLEDTNV 390
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAKKKAEEKKkadEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 391 RLNKMESEYMAQTQSTNHMIKELEARVQQ------LTGEAENS----NLQRQKLIQEKAELERCYQITCSELQEVKARRN 460
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEakkadeAKKKAEEAkkaeEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 461 TLHKEKDHLVNDYEQNMKLLQTKYDADI----NLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK--QQLRDQ 534
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAkkadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 535 ENKFQMEK--SHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEAlKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL 612
Cdd:PTZ00121 1574 EDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 613 NSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDSLVRD 689
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 690 HEREIENLEKQLRAANMEHEnqiQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIV 769
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 1212619496 770 VNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 819
Cdd:PTZ00121 1810 IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
505-950 |
1.06e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 505 MIEELEQNVCQLKQQLQES-ELQRKQQ---------LRDQENKFQMEKSHLKHIYEKKAhdlQSELDKgKEDTQKKIHKF 574
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRES---QSQEDL-RNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 575 EEALKEKEEQL----TRVTEVQRLQAQQaDAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQL 650
Cdd:pfam15921 155 EAAKCLKEDMLedsnTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 651 EDIRQR---YEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQefkkrdaqviadme 727
Cdd:pfam15921 234 SYLKGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ-------------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 728 AQVHKLREELINVNSQRKQQLVELgllreeekqratrehEIVVNKLKAESEKMKiELKKTHAAETEMTLEKANSKLKQIE 807
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 808 KEYTQKLAKSSQIIAELQTTISSLKEEnsQQQLAAERrlqdvrqkfEDEKKQLIRDNDQAIKV--LQDELENRSNQVRCA 885
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1212619496 886 EKKLQHKELESQEQITYIRQEYETKLKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 950
Cdd:pfam15921 432 EALLKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
292-862 |
1.29e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.00 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 292 NEIEELKTLYRSKQH------ETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAE 365
Cdd:pfam12128 248 QEFNTLESAELRLSHlhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 366 MEQ----EKFDLQKQHTEniQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQ--------QLTGEAENSNLQRQK 433
Cdd:pfam12128 328 EDQhgafLDADIETAAAD--QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnnrDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 434 LIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEhALSASKASSMIEELEQnv 513
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEA-- 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 514 CQLKQQLQESELQRKQQLRDQEN-----------KFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHK--------- 573
Cdd:pfam12128 483 ANAEVERLQSELRQARKRRDQASealrqasrrleERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKvispellhr 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 574 ------FEEALKEKEEQLTRVT-EVQRLQAQQADAALEEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEf 646
Cdd:pfam12128 563 tdldpeVWDGSVGGELNLYGVKlDLKRIDVPEWAASEEELRERLD-KAEEALQSAREKQAAAEEQLVQANGELEKASRE- 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 647 lwqLEDIRQRYEQ---QIVELKLEHEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 723
Cdd:pfam12128 641 ---ETFARTALKNarlDLRRLFDEKQSEKDKKNKALAERKDSA----NERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 724 ADMEAQVHKLREELINvnsqrKQQLVELGLLREEEKQRAtreheivvnKLKAESEKMKIELKKTHAAETEMtlekanSKL 803
Cdd:pfam12128 714 TEKQAYWQVVEGALDA-----QLALLKAAIAARRSGAKA---------ELKALETWYKRDLASLGVDPDVI------AKL 773
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1212619496 804 KQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 862
Cdd:pfam12128 774 KREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLAR 832
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
634-900 |
1.66e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.13 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 634 RSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV-RDHEREIENLEKQLraanmehENQI 712
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL-------ERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 713 QEFKKRDAQVIADME--AQVHKLRE-ELINVNSQRKQQLVELGL-------LREEEKQRATREHEIVVNKLKAESEKMKI 782
Cdd:pfam17380 355 QEERKRELERIRQEEiaMEISRMRElERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 783 ELKKTHAAETEMTLEkansKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 862
Cdd:pfam17380 435 REVRRLEEERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1212619496 863 DNDQAiKVLQDELENRSNQV-------RCAEKKLQHKELESQEQI 900
Cdd:pfam17380 511 EERKR-KLLEKEMEERQKAIyeeerrrEAEEERRKQQEMEERRRI 554
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
524-910 |
1.74e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 524 ELQRKQQLRDQENKFQMEKSHLKHIYEKKAhdlqSELDKGKEDTQKKihkfEEALKEKEEQLTRVTEVQRLQAQQADAAL 603
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 604 EEFKRQVELnsekvyAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEqqivELKLEHEQEKthllqqhNAEK 683
Cdd:PTZ00121 1360 EAAEEKAEA------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKK-------KADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 684 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQlvELGLLREEEKQRAT 763
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 764 REHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 843
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1212619496 844 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETK 910
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-735 |
1.89e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 401 AQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLL 480
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 481 QTKYDADINLLKQEHALSA--SKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQS 558
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEErlEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 559 ELDKgKEDTQKKIHKFEEALKEKEEQLTRVT------EVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEA-- 630
Cdd:TIGR02168 829 LERR-IAATERRLEDLEEQIEELSEDIESLAaeieelEELIEELESELEALLNERASLEEALALLRSELEELSEELREle 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 631 ----DLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAA 704
Cdd:TIGR02168 908 skrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEeeARRRLKRLENKIKELGPV 987
|
330 340 350
....*....|....*....|....*....|....*
gi 1212619496 705 NMEHENQIQEFKKR----DAQvIADMEAQVHKLRE 735
Cdd:TIGR02168 988 NLAAIEEYEELKERydflTAQ-KEDLTEAKETLEE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
238-933 |
2.27e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 238 RKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKtlyRSKQHETEETIRKLEK 317
Cdd:PTZ00121 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKK---KAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 318 kvqtlIRDCQVIRETKEDQIAELKKICEQS---TESLNNDWEKKLHNAVAEMEQEKFDLQKQHTE--NIQELLEDTNVR- 391
Cdd:PTZ00121 1139 -----ARKAEEARKAEDAKRVEIARKAEDArkaEEARKAEDAKKAEAARKAEEVRKAEELRKAEDarKAEAARKAEEERk 1213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 392 ---LNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDH 468
Cdd:PTZ00121 1214 aeeARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 469 LVNDYEQNMKLLQTKYdadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKhi 548
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKK-------KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-- 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 549 yEKKAHDLQSELDKGKEDTQKK----IHKFEEALKEKEEQLTRVTEVQRLQAQQADAalEEFKRQVElNSEKVYAEMKEQ 624
Cdd:PTZ00121 1365 -KAEAAEKKKEEAKKKADAAKKkaeeKKKADEAKKKAEEDKKKADELKKAAAAKKKA--DEAKKKAE-EKKKADEAKKKA 1440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 625 MEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAA 704
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 705 NMEHENQIQEFKKRDAQVIAD--MEAQVHKLREELINVNSQRKQQLVElgllREEEKQR-------ATREHEIV--VNKL 773
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADeaKKAEEKKKADELKKAEELKKAEEKK----KAEEAKKaeedknmALRKAEEAkkAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 774 KAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE-------- 843
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAeeakkaee 1672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 844 --RRLQDVRQKFEDEKK---QLIRDNDQAIKVlqDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPAS 918
Cdd:PTZ00121 1673 dkKKAEEAKKAEEDEKKaaeALKKEAEEAKKA--EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
730
....*....|....*
gi 1212619496 919 LRQELEDTISSLKSQ 933
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKE 1765
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
554-916 |
4.48e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.97 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 554 HDLQSELDKGKEDTQKKIHKFE-EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL--NSEKVYAEMKEQMEKVEA 630
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyaEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 631 DlTRSKSLREKQSKEFLWQLEDIRQryeqqIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEN 710
Cdd:pfam17380 356 E-ERKRELERIRQEEIAMEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 711 QiqEFKKRDAQVIADMEA-QVHKLREElinvNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 789
Cdd:pfam17380 430 E--EARQREVRRLEEERArEMERVRLE----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 790 AETEMTLEKANSKLKQIEKEYTQKlakssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLirdndqaik 869
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEMEERQK------AIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------- 568
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1212619496 870 vlqDELENRSNQVR-CAEKKLQHKELESQEQITYIRQEYETKLKGLMP 916
Cdd:pfam17380 569 ---EAMEREREMMRqIVESEKARAEYEATTPITTIKPIYRPRISEYQP 613
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
271-954 |
4.72e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 4.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 271 EKLKLQQKHDADVQKILERKNNEIEELKTlYRSKQHETEETIRKLEKKVQTLI----RDCQVIRETKEDQIAELKKICEQ 346
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 347 STESLNnDWEKKLHNAVAEMEQEkfdlqkqhTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAEN 426
Cdd:TIGR02169 256 LTEEIS-ELEKRLEEIEQLLEEL--------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 427 SNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEHALSASKASSMI 506
Cdd:TIGR02169 327 LEAEIDKLLAEIEELER-------EIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 507 EELEQNVCQLKQqLQESELQRKQQLRDQENKfqmekshLKHIYEKKAhdlqsELDKGKEDTQKKIHKFEEALKEKEEQLT 586
Cdd:TIGR02169 399 REINELKRELDR-LQEELQRLSEELADLNAA-------IAGIEAKIN-----ELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 587 RVtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEF--LWQLEDIRQRYE------ 658
Cdd:TIGR02169 466 KY-EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHgtVAQLGSVGERYAtaieva 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 659 -----QQIVELKLEHEQEKTHLLQQHNAEKDSL-----VRDHEREIENLEKQLR---AANM-EHENQIQE---FKKRDAQ 721
Cdd:TIGR02169 545 agnrlNNVVVEDDAVAKEAIELLKRRKAGRATFlplnkMRDERRDLSILSEDGVigfAVDLvEFDPKYEPafkYVFGDTL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 722 VIADMEA---QVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELK---------KTHA 789
Cdd:TIGR02169 625 VVEDIEAarrLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSslqselrriENRL 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 790 AETEMTLEKANSKLKQIEKEYT---QKLAKSSQIIAELQTTISSLKEE---NSQQQLAAERRLQDVRQKFEDEKKQL--- 860
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEqleQEEEKLKERLEELEEDLSSLEQEienVKSELKELEARIEELEEDLHKLEEALndl 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 861 -IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEqITYIRQEYETKLKGLMpaSLRQELEDTISSLKSQVNFLQK 939
Cdd:TIGR02169 785 eARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQ--EQRIDLKEQIKSIEKEIENLNG 861
|
730
....*....|....*
gi 1212619496 940 RASILQEELTTYQGR 954
Cdd:TIGR02169 862 KKEELEEELEELEAA 876
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
269-636 |
6.99e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 6.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 269 HEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKL---EKKVQTLIRDCQVIRETKEDQIAELKKICE 345
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 346 QSTEslNNDWEKKLHNAVAEMEQEKFDLQKQhTENIQELLEDTNVRLNKMESEYmaqtQSTNHMIKELEARVQQLTGEAE 425
Cdd:TIGR02168 762 EIEE--LEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 426 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDY---EQNMKLLQTKYDadinllkqehalsasKA 502
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELE---------------EL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 503 SSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKE 582
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1212619496 583 EQLTRVTEVQRlqaqqadAALEEFKRQvelnsEKVYAEMKEQMEkveaDLTRSK 636
Cdd:TIGR02168 979 NKIKELGPVNL-------AAIEEYEEL-----KERYDFLTAQKE----DLTEAK 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-951 |
1.25e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 619 AEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQQIVELKLEHEQekthLLQQHNAEKdslvrdheREIENLE 698
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENR-LDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLK--------ERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 699 KQLRAANMEHENQIQEFKKRDAqVIADMEAQVHKLREELinvnsqrkqqlvelgllreEEKQRATREHEIvvNKLKAESE 778
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEAL-------------------NDLEARLSHSRI--PEIQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 779 KMKIELKKthaaetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQttisslkeensQQQLAAERRLQDVRQKFEDEKK 858
Cdd:TIGR02169 802 KLEEEVSR---------IEARLREIEQKLNRLTLEKEYLEKEIQELQ-----------EQRIDLKEQIKSIEKEIENLNG 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 859 QlirdndqaIKVLQDELENRSNQVRCAEKklQHKELESQeqityiRQEYETKLKGLMPAslRQELEDTISSLKSQVNFLQ 938
Cdd:TIGR02169 862 K--------KEELEEELEELEAALRDLES--RLGDLKKE------RDELEAQLRELERK--IEELEAQIEKKRKRLSELK 923
|
330
....*....|...
gi 1212619496 939 KRASILQEELTTY 951
Cdd:TIGR02169 924 AKLEALEEELSEI 936
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
579-799 |
1.47e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 52.14 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 579 KEKEEQLTRVTEVQRLQAQQADAALEEFKRQVelnsEKVYAEMKEQMEKVEAdltRSKSLREKQskeflwqlediRQRYE 658
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE---EEDKLLEEA-----------EKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 659 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLRE--E 736
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1212619496 737 LINVNSQRKQQL--------VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 799
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
409-940 |
2.91e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 51.44 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 409 MIKELEARVQQ---LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyd 485
Cdd:PRK01156 174 VIDMLRAEISNidyLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 486 adiNLLKQEHALSASKAsSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHiYEKKAHDLQSELDKGKE 565
Cdd:PRK01156 252 ---NRYESEIKTAESDL-SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 566 DtqkkIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSekvYAEMKEQMEKVEADLTRSKSLREKQSKE 645
Cdd:PRK01156 327 I----IKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS---IESLKKKIEEYSKNIERMSAFISEILKI 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 646 FLWQLEDIRQRYEQQIVELkleheQEKTHLLQQHNAEKDSLvRDHEREIENLEKQLRAANM-------EHENQIQEFKKR 718
Cdd:PRK01156 400 QEIDPDAIKKELNEINVKL-----QDISSKVSSLNQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttLGEEKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 719 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIvVNKLKAESEKMKI---ELKKTHAAETEMT 795
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNK-IESARADLEDIKIkinELKDKHDKYEEIK 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 796 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQlirdNDQAIKVLQDEL 875
Cdd:PRK01156 553 NRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEA 628
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1212619496 876 ENRSNQVRCA-EKKLQHKELesQEQITYIRQEYeTKLKGLMPAslRQELEDTISSLKSQVNFLQKR 940
Cdd:PRK01156 629 NNLNNKYNEIqENKILIEKL--RGKIDNYKKQI-AEIDSIIPD--LKEITSRINDIEDNLKKSRKA 689
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
247-899 |
3.11e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 3.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 247 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDC 326
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 327 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFD---LQKQHTENIQELLEDTNVRLNKMESEYMAQT 403
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEeleKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 404 QSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTK 483
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES-IELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 484 YDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKG 563
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 564 KEDTQKKIHKFEEALKEKEEQL----TRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLR 639
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPlgarKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 640 EKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRD 719
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 720 AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 799
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 800 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRS 879
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
650 660
....*....|....*....|
gi 1212619496 880 NQVRCAEKKLQHKELESQEQ 899
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKE 892
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
501-864 |
4.12e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 50.60 E-value: 4.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 501 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELDKGKedtqkkiHKFEEALKE 580
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLLANR-------FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 581 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 653
Cdd:PRK04778 170 LEKQL--------------ENLEEEFSQFVELTESgdyvearEILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 654 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN---------MEHE----NQIQEFKKRD 719
Cdd:PRK04778 236 KAGYRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 720 AQVIADMEAQVHKLREELinvnsqrkQQLVELGLLREEEKQRAtREHEIVVNKLKAESEKMKIELKKTHAA--ETEMTLE 797
Cdd:PRK04778 316 PDFLEHAKEQNKELKEEI--------DRVKQSYTLNESELESV-RQLEKQLESLEKQYDEITERIAEQEIAysELQEELE 386
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1212619496 798 KANSKLKQIEKEytqklakssqiIAELQTTISSLKEEnsqqQLAAERRLQDVRQKFEDEKKQLIRDN 864
Cdd:PRK04778 387 EILKQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSN 438
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
365-933 |
5.73e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 5.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 365 EMEQEKFDLQKqhtenIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARvQQLTGEAENsnlQRQKLIQEKAELERC 444
Cdd:pfam01576 6 EMQAKEEELQK-----VKERQQKAESELKELEKKHQQLCEEKNALQEQLQAE-TELCAEAEE---MRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 445 YQITCSELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADiNLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 524
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKM----QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 525 LQRKQ----------QLRDQENKFQMeKSHLKHIYEKKAHDLQSEL---DKGKEDTQKKIHKFEEALKEKEEQLTRvtev 591
Cdd:pfam01576 152 KERKLleeriseftsNLAEEEEKAKS-LSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLEGESTDLQEQIAE---- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 592 qrLQAQQADAALEEFKRQVELNSEKVYAEmKEQMEKVEAdltrSKSLREKQS-----KEFLWQLEDIRQRYEQQIVELKL 666
Cdd:pfam01576 227 --LQAQIAELRAQLAKKEEELQAALARLE-EETAQKNNA----LKKIRELEAqiselQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 667 EHEQEKTHLL--QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVN--- 741
Cdd:pfam01576 300 ELEALKTELEdtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEkak 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 742 ----SQRKQQLVELGLL--REEEKQRATREHEIVVNKLKA---ESEKMKIEL-KKTHAAETEmtLEKANSKLKQIEKEYT 811
Cdd:pfam01576 380 qaleSENAELQAELRTLqqAKQDSEHKRKKLEGQLQELQArlsESERQRAELaEKLSKLQSE--LESVSSLLNEAEGKNI 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 812 QKLAKSSQIIAELQTTISSLKEENSQQ--------QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVR 883
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKlnlstrlrQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1212619496 884 CAEKKLQHKELESQEQITYIRQEYETKLKGL-----MPASLRQELEDTISSLKSQ 933
Cdd:pfam01576 538 GTLEALEEGKKRLQRELEALTQQLEEKAAAYdklekTKNRLQQELDDLLVDLDHQ 592
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
254-855 |
6.16e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 6.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 254 EKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHET------EETIRKLEKKVQTLIRDCQ 327
Cdd:TIGR00618 276 EAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRaahvkqQSSIEEQRRLLQTLHSQEI 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 328 VIRETKEDQIAELKKICEQSTEslnndwekkLHNAVAEMEQEKFDLQK-QHTENIQELLEDTNVRLNKMESEYMAQTQST 406
Cdd:TIGR00618 356 HIRDAHEVATSIREISCQQHTL---------TQHIHTLQQQKTTLTQKlQSLCKELDILQREQATIDTRTSAFRDLQGQL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 407 NHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTL--HKEKDHLVNDYEQNMKLLQTKY 484
Cdd:TIGR00618 427 AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHlqETRKKAVVLARLLELQEEPCPL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 485 DADINLLKQE--HALSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDL 556
Cdd:TIGR00618 507 CGSCIHPNPArqDIDNPGPLTRRMQRGEQTYAQLETSEEDvyhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 557 QSeLDKGKEDTQKKIHKFEEALKEKEEQLTRvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSK 636
Cdd:TIGR00618 587 PN-LQNITVRLQDLTEKLSEAEDMLACEQHA--LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 637 SLREKQSKEFLWQledIRQRYEQqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFK 716
Cdd:TIGR00618 664 ALSIRVLPKELLA---SRQLALQ-----KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 717 KRD---AQVIADMEAQVHKLREELINVNSQRKQQL-VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAET 792
Cdd:TIGR00618 736 AREdalNQSLKELMHQARTVLKARTEAHFNNNEEVtAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSD 815
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1212619496 793 EMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLkEENSQQQLAAERRLQDVRQKFED 855
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQLTQEQAKIIQLSDK 877
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
597-834 |
6.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 597 QQADAALEEFKRqvelnsekvYAEMKEQMEKVEADLTRSKSLREKQSKefLWQLEDIRQRYEQQIVELKLEHEQEKTHLL 676
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 677 QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQ---QLVELGL 753
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 754 LREEEKQRATREHEivvnKLKAESEKMKIELKKTHAAETEM--TLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSL 831
Cdd:COG4913 374 PLPASAEEFAALRA----EAAALLEALEEELEALEEALAEAeaALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
...
gi 1212619496 832 KEE 834
Cdd:COG4913 450 AEA 452
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
556-774 |
8.04e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 8.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 556 LQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtevqrlqaQQADAALEEFKRQ---VELNSE-----KVYAEMKEQMEK 627
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKEL-----------EEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 628 VEADLTRSKSLR---EKQSKEFLWQLEDIR-----QRYEQQIVELKLEHEQEKTHLLQQHNAekdslVRDHEREIENLEK 699
Cdd:COG3206 231 ARAELAEAEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1212619496 700 QLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkQQLVELgllrEEEKQRATREHEIVVNKLK 774
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE-AELRRL----EREVEVARELYESLLQRLE 375
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
313-675 |
9.00e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.90 E-value: 9.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 313 RKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEK--KLHNAVAEMEQEKFDLQKqhtENIQELLEDTNV 390
Cdd:PLN02939 48 KKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSsdDDHNRASMQRDEAIAAID---NEQQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 391 RLNKMESEYMAQTQSTNHMIKEL-EARVQQLtGEAEnsnlqrqKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHL 469
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAEKNILLLnQARLQAL-EDLE-------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 470 VNDYEQNMKLLqtkydadiNLLKQEHALSASKASSMIEEL----EQNVcQLKQQLQESELQRKQQLRDQENKFQMEKSHl 545
Cdd:PLN02939 197 EILEEQLEKLR--------NELLIRGATEGLCVHSLSKELdvlkEENM-LLKDDIQFLKAELIEVAETEERVFKLEKER- 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 546 kHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE---EFKRQVE-----LNSEKV 617
Cdd:PLN02939 267 -SLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDqnqDLRDKVDkleasLKEANV 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1212619496 618 YAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLedirQRYEQQIVEL-----KLEHEQEKTHL 675
Cdd:PLN02939 346 SKFSSYKVELLQQKLKLLEERLQASDHEIHSYI----QLYQESIKEFqdtlsKLKEESKKRSL 404
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
340-927 |
1.05e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 340 LKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEaRVQQ 419
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR-EALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 420 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALS 498
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRiHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 499 ASKASSMIEELEQNVCQLKQQLQESELQR-KQQLRDQENKFQMEKSHLKHIYEKKA---------HDLQSELDKGKEDTQ 568
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRlLQTLHSQEIHIRDAHEVATSIREISCqqhtltqhiHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 569 KKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLW 648
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 649 QLEDIRQRYEqqivELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhenQIQEFKKRDAQVIADMEA 728
Cdd:TIGR00618 477 TKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ---RGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 729 QVHKLREELINVNSQRK---QQLVELGLLREEEKQRA---TREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSK 802
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQeiqQSFSILTQCDNRSKEDIpnlQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 803 LKQIEKEYTQKLAKSSQIIAELQTT------------ISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL------IRDN 864
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTltqervrehalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLaqcqtlLREL 709
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1212619496 865 DQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELEDTI 927
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA 772
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
255-668 |
1.41e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 255 KELD---MKTKMMEAKFHEEKLKLQQKHDADVQKIlERKNNEIEELKTLyRSKQHETEETIRKLEKKVQTLIRDCQVIRE 331
Cdd:pfam15921 419 RELDdrnMEVQRLEALLKAMKSECQGQMERQMAAI-QGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSER 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 332 TKEDQIAELKKIcEQSTESLNNDWEKKlhnavaemeQEKFDLQKQHTENIQEllEDTNVRLNKMESEYMA-QTQSTNHMI 410
Cdd:pfam15921 497 TVSDLTASLQEK-ERAIEATNAEITKL---------RSRVDLKLQELQHLKN--EGDHLRNVQTECEALKlQMAEKDKVI 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 411 KELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVK--------------ARRNTLHKEKDHLVNDYEQN 476
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdakireleARVSDLELEKVKLVNAGSER 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 477 MKLLQTKYDADINLLkQEHALSASKASSMIEE---LEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKA 553
Cdd:pfam15921 645 LRAVKDIKQERDQLL-NEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDG 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 554 HDLQSELDKGKEDT---------QKKIHKFEEALKE--KEEQLTRvTEVQRLQAQQADAALEEFKRQVELNSekvyaeMK 622
Cdd:pfam15921 724 HAMKVAMGMQKQITakrgqidalQSKIQFLEEAMTNanKEKHFLK-EEKNKLSQELSTVATEKNKMAGELEV------LR 796
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1212619496 623 EQMEKVEADLTRSKSLREKQSKEFLwQLEDIRQRYEQQIVELKLEH 668
Cdd:pfam15921 797 SQERRLKEKVANMEVALDKASLQFA-ECQDIIQRQEQESVRLKLQH 841
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-786 |
1.53e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 436 QEKAELERCYQitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKydadinllkqehalsASKASSMIEELEQNVCQ 515
Cdd:TIGR02169 671 SEPAELQRLRE----RLEGLKRELSSLQSELRRI----ENRLDELSQE---------------LSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 516 LKQQlQESELQRKQQLRDQENKFQMEKSHLKhiyekkahDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVtevqrlQ 595
Cdd:TIGR02169 728 LEQE-EEKLKERLEELEEDLSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARLSHS------R 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 596 AQQADAALEEFKRQVelnsekvyAEMKEQMEKVEADLTRSKSLREkqskeflwQLEDIRQRYEQQIVELKL--EHEQEKT 673
Cdd:TIGR02169 793 IPEIQAELSKLEEEV--------SRIEARLREIEQKLNRLTLEKE--------YLEKEIQELQEQRIDLKEqiKSIEKEI 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 674 HLLQQHNAEKDSLVRDHEREIENLEKQ---LRAANMEHENQIQEFKKRdaqvIADMEAQVHKLREELINVNSQR---KQQ 747
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRlgdLKKERDELEAQLRELERK----IEELEAQIEKKRKRLSELKAKLealEEE 932
|
330 340 350
....*....|....*....|....*....|....*....
gi 1212619496 748 LVELGLLREEEKQRAtrEHEIVVNKLKAESEKMKIELKK 786
Cdd:TIGR02169 933 LSEIEDPKGEDEEIP--EEELSLEDVQAELQRVEEEIRA 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
691-952 |
2.19e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 691 EREIENLEKQLRAAnMEHENQIQEFKKRDAQVIAdmeAQVHKLREELINVNSQRKQQLVELgllREEEKQRATREHEIVV 770
Cdd:COG1196 199 ERQLEPLERQAEKA-ERYRELKEELKELEAELLL---LKLRELEAELEELEAELEELEAEL---EELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 771 NKLKAESEKMKIELKKTHAAETEMTLEKANSKL---KQIEKEYTQKLAKSSQIIAELQTTISSLKE---ENSQQQLAAER 844
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIarlEERRRELEERLEELEEELAELEEELEELEEeleELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 845 RLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQvrcAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELE 924
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL---LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260
....*....|....*....|....*...
gi 1212619496 925 DTISSLKSQVNFLQKRASILQEELTTYQ 952
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEE 456
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
724-954 |
2.20e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 724 ADMEAQVHKLREELiNVNSQRKQQLVELGLlREEEKQRATReheiVVNKLKAESEKMKIELKKTHAAET----EMTLEKA 799
Cdd:COG3206 114 ASREAAIERLRKNL-TVEPVKGSNVIEISY-TSPDPELAAA----VANALAEAYLEQNLELRREEARKAleflEEQLPEL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 800 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLK-EENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQD-ELEN 877
Cdd:COG3206 188 RKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQQ 267
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1212619496 878 RSNQVRCAEKKLQhkELESQEQITYIR-QEYETKLKGLMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 954
Cdd:COG3206 268 LRAQLAELEAELA--ELSARYTPNHPDvIALRAQIAALR-AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
496-725 |
3.19e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 496 ALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHI--YEKKAHDLQSELDKGKE---DTQKK 570
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELAALEAelaELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 571 IHKFEEALKEKEEQL-TRVTEVQRLQAQQADAAL------EEFKRQVELnSEKVYAEMKEQMEKVEADLTRSKSLREKQS 643
Cdd:COG4942 92 IAELRAELEAQKEELaELLRALYRLGRQPPLALLlspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 644 KEfLWQLEDIRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 723
Cdd:COG4942 171 AE-RAELEALLAELEEERAALEAL-KAERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 1212619496 724 AD 725
Cdd:COG4942 245 AA 246
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
517-671 |
6.26e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 6.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 517 KQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 596
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1212619496 597 QQADAALEEFKRQvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDIRQRYEQQIVELKLEHEQE 671
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
601-947 |
1.09e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 601 AALEEFKrQVELNSEK---VYAEMKEQMEKVEadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEheqekthllq 677
Cdd:TIGR02169 174 KALEELE-EVEENIERldlIIDEKRQQLERLR---------REREKAERYQALLKEKREYEGYELLKEKE---------- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 678 qhnaekdslvrDHEREIENLEKQLRAANMEHEN---QIQEFKKRDA---QVIADMEAQVHKL-REELINVNSQRKQQLVE 750
Cdd:TIGR02169 234 -----------ALERQKEAIERQLASLEEELEKlteEISELEKRLEeieQLLEELNKKIKDLgEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 751 LGLLR--EEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAnsKLKQIEKEYTQKLAKSSQIIAELQTTI 828
Cdd:TIGR02169 303 IASLErsIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD--KLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 829 SSLKEENSQQQLAAE-------------RRLQDVRQKFEDEKKQL---IRDNDQAIKVLQDELENRSNQVRCAEKKLQhk 892
Cdd:TIGR02169 381 AETRDELKDYREKLEklkreinelkrelDRLQEELQRLSEELADLnaaIAGIEAKINELEEEKEDKALEIKKQEWKLE-- 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1212619496 893 elESQEQITYIRQEYETKLKGLmpaslrQELEDTISSLKSQVNFLQKRASILQEE 947
Cdd:TIGR02169 459 --QLAADLSKYEQELYDLKEEY------DRVEKELSKLQRELAEAEAQARASEER 505
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
501-641 |
1.26e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.97 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 501 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQ-MEKSHLKhiYEKKAHDLQSELDKGKEDTQKKIHK-FEEAL 578
Cdd:PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKeAEKLKEE--LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1212619496 579 KEKEEQLTRVTEVQRLQ-----AQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 641
Cdd:PRK00409 584 KEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
599-911 |
1.29e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 45.77 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 599 ADAALEEFKRQVELNSEKVYAEMKEQMEKVeadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKT----- 673
Cdd:NF033838 52 GNESQKEHAKEVESHLEKILSEIQKSLDKR----------KHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTsktkk 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 674 ------HLLQQHNAEKDSLVRDHEREIENLEKQLRAANME-HENQIQEFKKRDAQVIADMEAQVHKLREELINVN---SQ 743
Cdd:NF033838 122 eldaafEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEakePR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 744 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK----------EYTQK 813
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrgvlgepatpDKKEN 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 814 LAKSSQIIAELQTTIS-SLKEEnsQQQLAAERRLQDVRQKFEDEKKQLIRD-NDQAIKVLQDELENRSNQVRCAEKKL-- 889
Cdd:NF033838 282 DAKSSDSSVGEETLPSpSLKPE--KKVAEAEKKVEEAKKKAKDQKEEDRRNyPTNTYKTLELEIAESDVKVKEAELELvk 359
|
330 340
....*....|....*....|...
gi 1212619496 890 -QHKELESQEQITYIRQEYETKL 911
Cdd:NF033838 360 eEAKEPRNEEKIKQAKAKVESKK 382
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
239-947 |
1.32e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 239 KSSSFHDDHFLSRIREKELDMKTKMMEAKFH-EEKLKLQQKHDADVQKILERKNNEIEELktlyrskQHETEETIRKLEK 317
Cdd:pfam05483 66 KDSDFENSEGLSRLYSKLYKEAEKIKKWKVSiEAELKQKENKLQENRKIIEAQRKAIQEL-------QFENEKVSLKLEE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 318 KVQT---LIRDCQVIRETkedqIAELKKICEQSTESlnndwEKKLHNAVAEMEQEKFDLQkQHTENIQELLEDTNVRLNK 394
Cdd:pfam05483 139 EIQEnkdLIKENNATRHL----CNLLKETCARSAEK-----TKKYEYEREETRQVYMDLN-NNIEKMILAFEELRVQAEN 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 395 MESEYMAQTQSTNHMIKELEARVQQLTGEAENsnlQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYE 474
Cdd:pfam05483 209 ARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK---QVSLLLIQITEKENKMKDLTFLLEESRDKANQL-EEKTKLQDENL 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 475 QNMKLLQTKYDADINLLKQEHALSASKASSMIEELE---QNVCQLKQQlQESELQRKQQLRDQENKFQMEKSHLKHIYEK 551
Cdd:pfam05483 285 KELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQiatKTICQLTEE-KEAQMEELNKAKAAHSFVVTEFEATTCSLEE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 552 KAHDLQSELDKGKEdtQKKIHKFEEALKEKE-EQLTRVTEVQRLQAQQADAALEEfkRQVELNSEKVYAEMKEQMEKVEA 630
Cdd:pfam05483 364 LLRTEQQRLEKNED--QLKIITMELQKKSSElEEMTKFKNNKEVELEELKKILAE--DEKLLDEKKQFEKIAEELKGKEQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 631 DLTRSKSLREKQSKEFLWQLEDIR---QRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANME 707
Cdd:pfam05483 440 ELIFLLQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 708 HE-NQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQL--VELGLLREEEKQRATREHEIVVNKLKAESEKMKIEL 784
Cdd:pfam05483 520 EDiINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGdeVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNL 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 785 KKTHAAETEMT--LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE-----NSQQQLAAERRLQDVRQKFEDEK 857
Cdd:pfam05483 600 KKQIENKNKNIeeLHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiiDNYQKEIEDKKISEEKLLEEVEK 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 858 KQLIRDndQAIKvLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYET--KLKGLMPASLRQELEDTISSLKSQVN 935
Cdd:pfam05483 680 AKAIAD--EAVK-LQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGlyKNKEQEQSSAKAALEIELSNIKAELL 756
|
730
....*....|..
gi 1212619496 936 FLQKRASILQEE 947
Cdd:pfam05483 757 SLKKQLEIEKEE 768
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-861 |
1.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 649 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKD-----SLVRDHEREIENLEKQLRAANMEH---ENQIQEFKKRDA 720
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalaRRIRALEQELAALEAELAELEKEIaelRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 721 QVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAN 800
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1212619496 801 SKLKQIEKEYTQKLAKSS-------QIIAELQTTISSLKEE-NSQQQLAAERRLQDVRQKFEDEKKQLI 861
Cdd:COG4942 188 AALEALKAERQKLLARLEkelaelaAELAELQQEAEELEALiARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
389-847 |
2.36e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 389 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEK 466
Cdd:COG3096 237 ALRENRMTLEAIRVTQSDRDLFKHLITEATNYVAADymRHAN-ERRELSERALELRRELFGARRQLAEEQYRLVEMAREL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 467 DHLvndyEQNMKLLQTKYDAD---INLLkqehaLSASKASSMIEELEQNVCQLKQQLQESELQRKqqlrdqenkfqmEKS 543
Cdd:COG3096 316 EEL----SARESDLEQDYQAAsdhLNLV-----QTALRQQEKIERYQEDLEELTERLEEQEEVVE------------EAA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 544 HLKHIYEKKAHDLQSELDKGKedTQkkIHKFEEALkekEEQLTRVtevqrLQAQQADAALEEFKRQVEL------NSEKV 617
Cdd:COG3096 375 EQLAEAEARLEAAEEEVDSLK--SQ--LADYQQAL---DVQQTRA-----IQYQQAVQALEKARALCGLpdltpeNAEDY 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 618 YAEMKEQMEKVEADLtrsKSLREKQSKEflwqlEDIRQRYEQ--QIVELKLEH-----------EQEKTHLLQQHNAEKD 684
Cdd:COG3096 443 LAAFRAKEQQATEEV---LELEQKLSVA-----DAARRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 685 SLVRDHEREIENLEKQLRAAnmehENQIQEFKKRDAQVIADmeaqvhklREELINVNSQRKQQLVELG-LLREEEKQRAT 763
Cdd:COG3096 515 QQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIGQQLDA--------AEELEELLAELEAQLEELEeQAAEAVEQRSE 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 764 REHEivvnkLKAESEKMKiELKKTHAAetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 843
Cdd:COG3096 583 LRQQ-----LEQLRARIK-ELAARAPA-----WLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
....
gi 1212619496 844 RRLQ 847
Cdd:COG3096 652 RKQA 655
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
307-946 |
2.69e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.04 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 307 ETEETIRKLEKKVQTLIRDCQ----VIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKfdlQKQHTENIQ 382
Cdd:TIGR01612 1023 EKEKATNDIEQKIEDANKNIPnieiAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIK---EKLKHYNFD 1099
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 383 ELLEDTNVR----LNKMESEYMAQTQSTNHMIKELEarvqQLTGEAENSnLQRQKLIQEKAELERCYQITCSELQEVKAR 458
Cdd:TIGR01612 1100 DFGKEENIKyadeINKIKDDIKNLDQKIDHHIKALE----EIKKKSENY-IDEIKAQINDLEDVADKAISNDDPEEIEKK 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 459 RNTLHKEKDHLVNDYEQNMKLLQ--TKYDADINLLKQEHALSAS------------------KASSMIEELEQNVCQLKQ 518
Cdd:TIGR01612 1175 IENIVTKIDKKKNIYDEIKKLLNeiAEIEKDKTSLEEVKGINLSygknlgklflekideekkKSEHMIKAMEAYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 519 QLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR--LQA 596
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKnlLDA 1334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 597 QQADAALEEFKRQV-------ELNS-EKVYAEMKEQMEKVE-------ADLTRSKSLREKQSKEFlwQLEDIRQRYEQQI 661
Cdd:TIGR01612 1335 QKHNSDINLYLNEIaniynilKLNKiKKIIDEVKEYTKEIEennknikDELDKSEKLIKKIKDDI--NLEECKSKIESTL 1412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 662 VELKLEHEQEKTHLLQQHNAEKDSlvrdhereieNLEKQLRAANMEHENQIQEFKKrdaqviadmeaqvhklreelINVN 741
Cdd:TIGR01612 1413 DDKDIDECIKKIKELKNHILSEES----------NIDTYFKNADENNENVLLLFKN--------------------IEMA 1462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 742 SQRKQQLVELgllreeEKQRATREHEIVVNKLKAESEKMKieLKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSS--- 818
Cdd:TIGR01612 1463 DNKSQHILKI------KKDNATNDHDFNINELKEHIDKSK--GCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSala 1534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 819 ------QIIAELQTTISSLKEENSQQQLAAERRLQDVRQ------KFEDEKKQLIRDNDQAIKVLQ--DELENRSNQVRC 884
Cdd:TIGR01612 1535 iknkfaKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEikkekfRIEDDAAKNDKSNKAAIDIQLslENFENKFLKISD 1614
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1212619496 885 AEKKLQH--KELESQEQ----ITYIRQEYETKLKGLMPASLRQELEdtisSLKSQVNFLQKRASILQE 946
Cdd:TIGR01612 1615 IKKKINDclKETESIEKkissFSIDSQDTELKENGDNLNSLQEFLE----SLKDQKKNIEDKKKELDE 1678
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
278-760 |
3.92e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 278 KHDADVQKILERKNNEIEELKTLYrskqhetEETIRKLEKKVQTLIRDCQVIReTKEDQIAELKKICEQSTESLNNDWEK 357
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY-------EDKIEELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLLADLHK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 358 KLHNAVAEMEQEK--FDLQKQHTENIQEL---LEDTNVRLNKME-------------------------------SEYMA 401
Cdd:pfam15921 389 REKELSLEKEQNKrlWDRDTGNSITIDHLrreLDDRNMEVQRLEallkamksecqgqmerqmaaiqgkneslekvSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 402 QTQSTNHMIKELearVQQLTGEA---ENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDyEQNMK 478
Cdd:pfam15921 469 QLESTKEMLRKV---VEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLR 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 479 LLQTKYDAdinlLKqehaLSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEKK 552
Cdd:pfam15921 545 NVQTECEA----LK----LQMAEKDKVIEILRQQIENMTQLVGQhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKK 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 553 AHDLQsELDKGKEDTQKKIHKFEEAlkeKEEQLTRVTEVQrlqaQQADAALEEFKR-QVELNSekvyaeMKEQMEKVEAD 631
Cdd:pfam15921 617 DAKIR-ELEARVSDLELEKVKLVNA---GSERLRAVKDIK----QERDQLLNEVKTsRNELNS------LSEDYEVLKRN 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 632 LTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLE-----HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANM 706
Cdd:pfam15921 683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMegsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANK 762
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1212619496 707 EhenqiQEFKKRDAqviadmeaqvHKLREELINVNSQRKQQLVELGLLREEEKQ 760
Cdd:pfam15921 763 E-----KHFLKEEK----------NKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
620-949 |
4.39e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 620 EMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLL-QQHNAEKDSLVRDHEREIENLE 698
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKgFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 699 KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELinvnSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESE 778
Cdd:COG5185 260 EQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 779 KMKIELKKTHAAETEMTLEKANSKLKQIE-KEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEK 857
Cdd:COG5185 336 TGIQNLTAEIEQGQESLTENLEAIKEEIEnIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 858 KQLIRDNDQ---AIKVLQDELENRSNQVRCAEKKLQHKELESQEqITYIRQEYETKLKGLMPASLRQELEDTISSLKSQV 934
Cdd:COG5185 416 KAADRQIEElqrQIEQATSSNEEVSKLLNELISELNKVMREADE-ESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRV 494
|
330
....*....|....*
gi 1212619496 935 NFLQKRASILQEELT 949
Cdd:COG5185 495 STLKATLEKLRAKLE 509
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
250-469 |
6.80e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 250 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQK----ILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTL--- 322
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKkngeNIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIedp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 323 ------IRDCQVIRETKEDQIAELKK------ICEQSTESLNNDWEKklhnaVAEMEQEKFDLQKQHteniqELLEDTNV 390
Cdd:PHA02562 254 saalnkLNTAAAKIKSKIEQFQKVIKmyekggVCPTCTQQISEGPDR-----ITKIKDKLKELQHSL-----EKLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 391 RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEaENSNLQRQKLIQE--------KAELERCYQitcsELQEVKARRNTL 462
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLLELKNKISTNKQSLITL-VDKAKKVKAAIEElqaefvdnAEELAKLQD----ELDKIVKTKSEL 398
|
....*..
gi 1212619496 463 HKEKDHL 469
Cdd:PHA02562 399 VKEKYHR 405
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
249-937 |
7.14e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 249 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 328
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 329 iretkEDQIAELKKiceqsteslnndwekklhnavaeMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQtqstnh 408
Cdd:TIGR00606 268 -----DNEIKALKS-----------------------RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRT------ 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 409 mIKELEARVQQLTGEAENSNLQRQKLIQEKAELER---CYQITCSELQEVKARRNTLHKE-KDHLVNDYEQNMKLLQTKY 484
Cdd:TIGR00606 314 -VREKERELVDCQRELEKLNKERRLLNQEKTELLVeqgRLQLQADRHQEHIRARDSLIQSlATRLELDGFERGPFSERQI 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 485 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKfqmekshlKHIYEKKAHDLQSELDKGK 564
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK--------KEILEKKQEELKFVIKELQ 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 565 --EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQ 642
Cdd:TIGR00606 465 qlEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 643 SKEFlWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQV 722
Cdd:TIGR00606 545 MDKD-EQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE--INQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 723 IA------------DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIV-----VNKLKAESEKMKIELK 785
Cdd:TIGR00606 622 SSyedklfdvcgsqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCpvcqrVFQTEAELQEFISDLQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 786 -KTHAAETEmtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEKKQL--IR 862
Cdd:TIGR00606 702 sKLRLAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLgtIM 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 863 DNDQAIKVLQDE---LENRSNQVRCAEKKLQHKELESQ-----EQITYIRQEYETK--------LKGLMPASLRQELEDT 926
Cdd:TIGR00606 779 PEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQgsdldRTVQQVNQEKQEKqheldtvvSKIELNRKLIQDQQEQ 858
|
730
....*....|.
gi 1212619496 927 ISSLKSQVNFL 937
Cdd:TIGR00606 859 IQHLKSKTNEL 869
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
280-674 |
8.04e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 8.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 280 DADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEqsteslnndwekKL 359
Cdd:TIGR00606 686 VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN------------KL 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 360 HNAVAEMEQEKFDLQKQHTE-----NIQELLEDTNVRLNKMESEYMaQTQSTNHMIKELEAR---------VQQLTGEAE 425
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLlgtimPEEESAKVCLTDVTIMERFQM-ELKDVERKIAQQAAKlqgsdldrtVQQVNQEKQ 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 426 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLlkQEHALSASKASSM 505
Cdd:TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV--QSLIREIKDAKEQ 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 506 IEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKaHDLQSELDKGKEDTQKK----IHKFEEALKEK 581
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM-KDIENKIQDGKDDYLKQketeLNTVNAQLEEC 989
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 582 EEQLTRVTEVQRLQAQQADAA-LEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLE---DIRQRY 657
Cdd:TIGR00606 990 EKHQEKINEDMRLMRQDIDTQkIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEeniDLIKRN 1069
|
410
....*....|....*..
gi 1212619496 658 EQQIVELKLEHEQEKTH 674
Cdd:TIGR00606 1070 HVLALGRQKGYEKEIKH 1086
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
398-766 |
9.52e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 9.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 398 EYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNM 477
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 478 KLLQTKYDADINLLKQEHALSASKASSMIEELEQnvcqlkQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ 557
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE------KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 558 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 637
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 638 LREKQSKEFLWQLEDiRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 717
Cdd:pfam02463 401 SEEEKEAQLLLELAR-QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1212619496 718 RDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREH 766
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
250-834 |
9.88e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 9.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 250 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTlyrsKQHETEETIRKLEKKVQTLIRDcqvi 329
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ----QIKDLNDKLKKNKDKINKLNSD---- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 330 retkedqiaeLKKICEQSteSLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNvRLNKMESEYmaqtQSTNHM 409
Cdd:TIGR04523 105 ----------LSKINSEI--KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEK-ELEKLNNKY----NDLKKQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 410 IKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDaDIN 489
Cdd:TIGR04523 168 KEELENELNLLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ-EIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 490 LLKQEHALSASKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSEL-------DK 562
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELkselknqEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 563 GKEDTQKKIHKFEEA---LKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVE-LNSEK-VYAEMKEQMEKVEADLTRSKS 637
Cdd:TIGR04523 322 KLEEIQNQISQNNKIisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEkLKKENqSYKQEIKNLESQINDLESKIQ 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 638 LREKQSKEFLWQLEDIRQRY---EQQIVELKLEHEQEKTHL--LQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQI 712
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKellEKEIERLKETIIKNNSEIkdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 713 QEFK------KRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKK 786
Cdd:TIGR04523 482 QNLEqkqkelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEK 561
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1212619496 787 ---------THAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE 834
Cdd:TIGR04523 562 eideknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
478-948 |
1.05e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 478 KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ 557
Cdd:TIGR00606 169 KALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 558 --SELDKGKEDTQKKIHKFEEALKEKEEqltrvTEVQRlqaqqadaalEEFKRQVELNSEKVYAEMKEQMEKVEADltRS 635
Cdd:TIGR00606 249 plKNRLKEIEHNLSKIMKLDNEIKALKS-----RKKQM----------EKDNSELELKMEKVFQGTDEQLNDLYHN--HQ 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 636 KSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEH----ENQ 711
Cdd:TIGR00606 312 RTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERgpfsERQ 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 712 IQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELgllrEEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAE 791
Cdd:TIGR00606 392 IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI----RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 792 TEMtlekanSKLKQIEKEYTQKLAKSSQIiaelqttissLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQaikvl 871
Cdd:TIGR00606 468 GSS------DRILELDQELRKAERELSKA----------EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ----- 526
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1212619496 872 qdelENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPA-SLRQELEDTISSLKSQVNFLQKRASILQEEL 948
Cdd:TIGR00606 527 ----LNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL 600
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
397-809 |
1.06e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 397 SEYMAQTQSTNHMIKELEArvqqltgEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhkEKDHLVNDYEQN 476
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQK-------TIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLL--KKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 477 MKLLQTKYDAdinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQrkqqlrdqENKFQMEKS-HLKHIYEKKAHD 555
Cdd:COG5022 877 VELAERQLQE-----LKIDVKSISSLKLVNLELESEIIELKKSLSSDLIE--------NLEFKTELIaRLKKLLNNIDLE 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 556 LQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKV-----YAEMKEQMEKVEA 630
Cdd:COG5022 944 EGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSkqygaLQESTKQLKELPV 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 631 DLTRSKSL--REKQSKEFLWQLEDIR----------QRYEQQIVELKLEHEQEKTHLLQQHNAEKdslVRDHEREIEnlE 698
Cdd:COG5022 1024 EVAELQSAskIISSESTELSILKPLQklkgllllenNQLQARYKALKLRRENSLLDDKQLYQLES---TENLLKTIN--V 1098
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 699 KQLRAANMEHENQIQEFKKRDAQVIA-DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAES 777
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFIVAQMIKlNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS 1178
|
410 420 430
....*....|....*....|....*....|..
gi 1212619496 778 EKmkielKKTHAAETEMTLEKANSKLKQIEKE 809
Cdd:COG5022 1179 EK-----RLYQSALYDEKSKLSSSEVNDLKNE 1205
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
506-737 |
1.23e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 506 IEELEQNVCQLKQQLQ-----ESELQRKQQLRDQENKFQMEKSHLKH-IYEKKAHDLQSELDKGKEDTQKKIHKFEEALK 579
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 580 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVElnsekvyaemkeqmekveaDLTRSKSLREKQSKEFLWQLEDIRQRYEQ 659
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIE-------------------RLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1212619496 660 QIVELKLEHEQEKtHLLQQHNAEKDSLvRDHEREIENLEKQLRAANMEHENQIQEFKKRDaqviADMEAQVHKLREEL 737
Cdd:COG4913 378 SAEEFAALRAEAA-ALLEALEEELEAL-EEALAEAEAALRDLRRELRELEAEIASLERRK----SNIPARLLALRDAL 449
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
566-715 |
1.47e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.17 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 566 DTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAAL--EEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQs 643
Cdd:COG2268 211 ETEIAIAQANREAEEAELEQEREIETARIAEAEAELAKkkAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAERE- 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1212619496 644 KEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEF 715
Cdd:COG2268 290 REIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAEGKRALAEAWNKLGDAAILLM 361
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-891 |
1.64e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 558 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 637
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 638 LREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKthllQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 717
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK----EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 718 RDAQVIADMEAQVHKLREELINV--NSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMT 795
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKElkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 796 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL-IRDNDQAIKVLQDE 874
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELeLKKSEDLLKETQLV 480
|
330
....*....|....*..
gi 1212619496 875 LENRSNQVRCAEKKLQH 891
Cdd:pfam02463 481 KLQEQLELLLSRQKLEE 497
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
327-906 |
1.73e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 327 QVIRETKEDQIAELKKICEQST---ESLNNDWEKKLHNAVAEMEQ--EKFDLQKQHTENIQELLEDTNVRLNKMESEYMA 401
Cdd:pfam01576 319 QELRSKREQEVTELKKALEEETrshEAQLQEMRQKHTQALEELTEqlEQAKRNKANLEKAKQALESENAELQAELRTLQQ 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 402 QTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQ 481
Cdd:pfam01576 399 AKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 482 TKYDADINLLKQEHALSASKASSM---------IEELEQNVCQLKQQLQES--------------ELQRKQQLRDQENKF 538
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQeqleeeeeaKRNVERQLSTLQAQLSDMkkkleedagtlealEEGKKRLQRELEALT 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 539 QM--EKSHLKHIYEKKAHDLQSELDKGKEDTQ----------KKIHKFEEALKE-------------KEEQLTRVTEVQR 593
Cdd:pfam01576 559 QQleEKAAAYDKLEKTKNRLQQELDDLLVDLDhqrqlvsnleKKQKKFDQMLAEekaisaryaeerdRAEAEAREKETRA 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 594 LQAQQADAALEEFKRQVELNSEKVYAEM------KEQMEKVEADLTRSKSLREKQSKEFLWQL----------EDIRQRY 657
Cdd:pfam01576 639 LSLARALEEALEAKEELERTNKQLRAEMedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLeeledelqatEDAKLRL 718
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 658 EQQIVELKLEHEQEKTHLLQQHNAEKDSL---VRDHEREIEN---------------------LEKQLRAANMEHENQIQ 713
Cdd:pfam01576 719 EVNMQALKAQFERDLQARDEQGEEKRRQLvkqVRELEAELEDerkqraqavaakkkleldlkeLEAQIDAANKGREEAVK 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 714 EFKKrdaqviadMEAQVHKLREELINVNSQRKQQLVelgLLREEEKQRATREHEIVV---NKLKAESEKMKIELKKTHAA 790
Cdd:pfam01576 799 QLKK--------LQAQMKDLQRELEEARASRDEILA---QSKESEKKLKNLEAELLQlqeDLAASERARRQAQQERDELA 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 791 ETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE---------ENSQQQLAAERRLQdvrQKFEDEKKQLI 861
Cdd:pfam01576 868 DEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDrlrkstlqvEQLTTELAAERSTS---QKSESARQQLE 944
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 1212619496 862 RDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQE 906
Cdd:pfam01576 945 RQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRE 989
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
302-833 |
2.24e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 302 RSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLN-NDWEKKLHNAVAEMEQEKFDL------Q 374
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGsQDEESDLERLKEEIEKSSKQRamlagaT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 375 KQHTENIQELLEDTNV------RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQIT 448
Cdd:TIGR00606 663 AVYSQFITQLTDENQSccpvcqRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 449 CSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTkYDADINLLK--QEHALSASKASSMIEELEQNVCQLKQQLQESELQ 526
Cdd:TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-IMPEEESAKvcLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 527 RKQQlrdQENKFQMEKSHLKHIYEKKAHDLQseldKGKEDTQKKIHKFEEALKE-KEEQLTRVTEVQRlqAQQADAALEE 605
Cdd:TIGR00606 822 RTVQ---QVNQEKQEKQHELDTVVSKIELNR----KLIQDQQEQIQHLKSKTNElKSEKLQIGTNLQR--RQQFEEQLVE 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 606 FKRQVElnseKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNA---E 682
Cdd:TIGR00606 893 LSTEVQ----SLIREIKDAKEQDSPLETFLEKDQQEK-EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKiqdG 967
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 683 KDSLVRDHEREIENLEKQLRaanmEHENQIQEFKKRDAQVIADMEAQvhKLREELINVNSQRKQQLVELGLLREEEKQRA 762
Cdd:TIGR00606 968 KDDYLKQKETELNTVNAQLE----ECEKHQEKINEDMRLMRQDIDTQ--KIQERWLQDNLTLRKRENELKEVEEELKQHL 1041
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1212619496 763 TREHEIVVNKLKAESEKMKIELK-------KTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE 833
Cdd:TIGR00606 1042 KEMGQMQVLQMKQEHQKLEENIDlikrnhvLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
385-626 |
2.31e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 385 LEDTNVRLNKME---SEYMAQTQSTNHMIKELEARVQQLTGEAENSN-LQRQKLIQEKAELE-------------RCYQI 447
Cdd:PRK04863 839 LRQLNRRRVELEralADHESQEQQQRSQLEQAKEGLSALNRLLPRLNlLADETLADRVEEIReqldeaeeakrfvQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 448 TCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQT---KYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 524
Cdd:PRK04863 919 ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDakqQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 525 LQR---KQQLRDQENKFQMekshlkhiYEKKAHDLQSELDKGKEDTQKKIHKF-----------EEALKEKEEQL----- 585
Cdd:PRK04863 999 QERtraREQLRQAQAQLAQ--------YNQVLASLKSSYDAKRQMLQELKQELqdlgvpadsgaEERARARRDELharls 1070
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1212619496 586 ---TRVTEVQRlQAQQADAALEEFKRQVELnSEKVYAEMKEQME 626
Cdd:PRK04863 1071 anrSRRNQLEK-QLTFCEAEMDNLTKKLRK-LERDYHEMREQVV 1112
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
508-783 |
2.36e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 508 ELEQNVCQLkQQLQESELQRKQQLrDQENKFQMEKSHLK-HIYEKKAHDLQSELDKGKEDtQKKIHKFEEALKEKEEQLT 586
Cdd:COG3096 851 ELAQHRAQE-QQLRQQLDQLKEQL-QLLNKLLPQANLLAdETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEPLVA 927
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 587 RV----TEVQRLQA--QQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQ 660
Cdd:COG3096 928 VLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKL-RARLEQAEEARREAREQ 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 661 ivelkLEHEQEKthlLQQHNAEKDSLVRDHereienlekqlRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREEL--- 737
Cdd:COG3096 1007 -----LRQAQAQ---YSQYNQVLASLKSSR-----------DAKQQTLQELEQELEELGVQADAEAEERARIRRDELhee 1067
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1212619496 738 INVNSQRKQQLvelgllreeEKQRATREHEI--VVNKLKAESEKMKIE 783
Cdd:COG3096 1068 LSQNRSRRSQL---------EKQLTRCEAEMdsLQKRLRKAERDYKQE 1106
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
396-747 |
2.50e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 396 ESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL--QEVKARRNTLHKEKDHLVNDY 473
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 474 EQNM-KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQL-QESELQRKQQLRDQEN--KFQMEKSHLKHIY 549
Cdd:pfam17380 347 ERELeRIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVrQELEAARKVKILEEERqrKIQQQKVEMEQIR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 550 EKKAHDLQSELDKGKEDTQKKIHKFeealkeKEEQLTRVTEVQRLQAQQAdaalEEFKRQVELNsekvyaemKEQMEKVE 629
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAREMERV------RLEEQERQQQVERLRQQEE----ERKRKKLELE--------KEKRDRKR 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 630 ADLTRSKSLREkqskeflwQLEDIRQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 709
Cdd:pfam17380 489 AEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*...
gi 1212619496 710 NQIQEFKKRDAQVIADMEAqVHKLREELINVNSQRKQQ 747
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEA-MEREREMMRQIVESEKAR 588
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
592-747 |
2.53e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 592 QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKV-EADLTRSKSLREKQSKEFlwqlEDIRQRYEQqivelkLEHEQ 670
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRErNQQRQEARREREELQREE----ERLVQKEEQ------LDARA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 671 EKTHLLQQHNAEKDSLVRDHEREIENLEKQL-----RAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRK 745
Cdd:PRK12705 98 EKLDNLENQLEEREKALSARELELEELEKQLdnelyRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
..
gi 1212619496 746 QQ 747
Cdd:PRK12705 178 AQ 179
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
649-798 |
2.55e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 649 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHERE-------IENLEKQLRAANMEHENQIQEFKKRDAQ 721
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKElrerrneLQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 722 V------IADMEAQVHKLREELINVNSQRKQQLVEL-GLLREEEKQratreheIVVNKLKAESEKMKIELKKTHAAETEM 794
Cdd:PRK12704 112 LekkekeLEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAKE-------ILLEKVEEEARHEAAVLIKEIEEEAKE 184
|
....
gi 1212619496 795 TLEK 798
Cdd:PRK12704 185 EADK 188
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
250-861 |
2.67e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 250 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETE---ETIRKLEKKVQTLIRDC 326
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQrlsEELADLNAAIAGIEAKI 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 327 QVIRETKEDQIAELKKIcEQSTESLNNDWEK------KLHNAVAEMEQEKFDLQKQHTEniqelLEDTNVRLNKMESEYM 400
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQ-EWKLEQLAADLSKyeqelyDLKEEYDRVEKELSKLQRELAE-----AEAQARASEERVRGGR 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 401 AQTQSTNHMIKELEARVQQLTG---------EAENSNLQRQKLIQEKAELERCYQI---------TCSELQEVKARRNTL 462
Cdd:TIGR02169 511 AVEEVLKASIQGVHGTVAQLGSvgeryataiEVAAGNRLNNVVVEDDAVAKEAIELlkrrkagraTFLPLNKMRDERRDL 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 463 HKEKDHLVNDYEQNMKLLQTKYDA-------------DINLLKQ---------------EHALSASKASSMIEELEQNVC 514
Cdd:TIGR02169 591 SILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvveDIEAARRlmgkyrmvtlegelfEKSGAMTGGSRAPRGGILFSR 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 515 QLKQQLQESElQRKQQLRDQENKFQMEKSHLkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRL 594
Cdd:TIGR02169 671 SEPAELQRLR-ERLEGLKRELSSLQSELRRI----ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 595 QAQQADAALEEFKRQVELNSEKVY-----AEMKEQMEKVEADLTRSkslREKQSKEFLWQLEDIRQRYEQQIVEL--KLE 667
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEEleedlHKLEEALNDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREIeqKLN 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 668 HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAanmehenqIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkqq 747
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN--------LNGKKEELEEELEELEAALRDLESRLGDLKKER--- 891
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 748 lvelgllreEEKQRATREHEIVVNKLKAEsekmkIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQI------- 820
Cdd:TIGR02169 892 ---------DELEAQLRELERKIEELEAQ-----IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsledvq 957
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 1212619496 821 --IAELQTTISSLKEENS---QQQLAAERR---LQDVRQKFEDEKKQLI 861
Cdd:TIGR02169 958 aeLQRVEEEIRALEPVNMlaiQEYEEVLKRldeLKEKRAKLEEERKAIL 1006
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
501-860 |
2.75e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 501 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKE 580
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 581 KEEQLTRVTEVQRLQAQQADA--ALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflwqLEDIRQRYE 658
Cdd:COG4717 155 LEELRELEEELEELEAELAELqeELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE----LEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 659 QQIVELKLEHEQEK----------------------------------------------------THLLQQHNAEKDSL 686
Cdd:COG4717 231 QLENELEAAALEERlkearlllliaaallallglggsllsliltiagvlflvlgllallflllareKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 687 VRDHEREIENLEKQLRAANMEHENQIQEFKK--RDAQVIADMEAQVHKLREEL-INVNSQRKQQLVELG----------- 752
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLEllDRIEELQELLREAEELEEELqLEELEQEIAALLAEAgvedeeelraa 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 753 LLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELqttisslk 832
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL-------- 462
|
410 420
....*....|....*....|....*...
gi 1212619496 833 eensqQQLAAERRLQDVRQKFEDEKKQL 860
Cdd:COG4717 463 -----EQLEEDGELAELLQELEELKAEL 485
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-522 |
2.89e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 251 RIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELktlyRSKQHETEETIRKLEKKVQTLIRDCQVIR 330
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 331 ETKEDQIAELKkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMI 410
Cdd:TIGR02168 803 EALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 411 KE---LEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDAD 487
Cdd:TIGR02168 880 NErasLEEALALLRSELEELSEELRELESKRSELRR-------ELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
250 260 270
....*....|....*....|....*....|....*
gi 1212619496 488 INLLKQEHALSASKASSMIEELEQNVCQLKQQLQE 522
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
389-767 |
3.14e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 389 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERcyqitcselqEVKARRNTLHKEK 466
Cdd:PRK04863 238 ALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADymRHAN-ERRVHLEEALELRR----------ELYTSRRQLAAEQ 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 467 DHLVN------DYEQNMKLLQTKY-DADINL-LKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKF 538
Cdd:PRK04863 307 YRLVEmarelaELNEAESDLEQDYqAASDHLnLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 539 QMEKSHLK------------HIYEKKA---HDLQSELDKGKED------TQKKIHKFEEALKEKEEQLTRvtevQRLQAQ 597
Cdd:PRK04863 387 AAEEEVDElksqladyqqalDVQQTRAiqyQQAVQALERAKQLcglpdlTADNAEDWLEEFQAKEQEATE----ELLSLE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 598 Q----ADAALEEFkrqvelnsEKVYAEMKeqmeKVEADLTRSKSLRekqskeflWQLEDIRQRYEQQivelkleHEQEKT 673
Cdd:PRK04863 463 QklsvAQAAHSQF--------EQAYQLVR----KIAGEVSRSEAWD--------VARELLRRLREQR-------HLAEQL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 674 HLLQQHNAEkdsLVRDHEREiENLEKQLRAANMEHENQIQEFKKRDaQVIADMEAQVHKLREELINVNSQR---KQQLVE 750
Cdd:PRK04863 516 QQLRMRLSE---LEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDELE-QLQEELEARLESLSESVSEARERRmalRQQLEQ 590
|
410
....*....|....*..
gi 1212619496 751 LGLLREEEKQRATREHE 767
Cdd:PRK04863 591 LQARIQRLAARAPAWLA 607
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
562-783 |
3.93e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 562 KGKEDTQKKIHKFEEALKEKEEQLTRVTEVQrLQAQQADAALEEFKRqvELNSEKVYAEMKEQMEKVEADLTRSKSLREK 641
Cdd:PLN02939 163 TEKEALQGKINILEMRLSETDARIKLAAQEK-IHVEILEEQLEKLRN--ELLIRGATEGLCVHSLSKELDVLKEENMLLK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 642 QSKEFLWQLEDIRQRYEQQIVELKLEH--------EQEKTHLLQQHNAEK-DSLVRDHERE-IENLEKQLRAANMEHEN- 710
Cdd:PLN02939 240 DDIQFLKAELIEVAETEERVFKLEKERslldaslrELESKFIVAQEDVSKlSPLQYDCWWEkVENLQDLLDRATNQVEKa 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 711 -----QIQEFKKRDAQVIADM-EAQVHKLREELINVnSQRKQQLVELGLLREEEK--------QRATREHEIVVNKLKAE 776
Cdd:PLN02939 320 alvldQNQDLRDKVDKLEASLkEANVSKFSSYKVEL-LQQKLKLLEERLQASDHEihsyiqlyQESIKEFQDTLSKLKEE 398
|
....*..
gi 1212619496 777 SEKMKIE 783
Cdd:PLN02939 399 SKKRSLE 405
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
501-862 |
4.15e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.99 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 501 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEKkahdLQSELdkgkedtQKKIHKFEEALKE 580
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRE----LRKTL-------LANRFSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 581 KEEQLtrvtevqrlqaqqaDAALEEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 653
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 654 RQRYEQQivelkleheQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEH-ENQIQEFKKRDAQVIADMEA---- 728
Cdd:pfam06160 217 KEGYREM---------EEEGYALEHLNVDKE--IQQLEEQLEENLALLENLELDEaEEALEEIEERIDQLYDLLEKevda 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 729 --QVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEivvnklkaesekmkiELKKTHAAETEmtLEKANSKLKQI 806
Cdd:pfam06160 286 kkYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNEN---------------ELERVRGLEKQ--LEELEKRYDEI 348
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1212619496 807 EKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAErRLQDVRQKFEDEKKQLIR 862
Cdd:pfam06160 349 VERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKE-SLQSLRKDELEAREKLDE 403
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
357-939 |
5.02e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 357 KKLHNAVAEMEQEKFDLQKQHT--ENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKL 434
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 435 IQEKAELERcyqitcsELQEVKARRNTLHKEkdhlVNDYEQNMKLLQTKYDaDINLLKQEHALSASKASSMIEELEQNVC 514
Cdd:TIGR04523 123 EVELNKLEK-------QKKENKKNIDKFLTE----IKKKEKELEKLNNKYN-DLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 515 QLKQQLQESEL---------QRKQQLRDQENKFQMEKSHLKHIYEKKAHDL----------QSELDKGKEDTQKKIHKFE 575
Cdd:TIGR04523 191 KIKNKLLKLELllsnlkkkiQKNKSLESQISELKKQNNQLKDNIEKKQQEInektteisntQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 576 EALKEKEEQLTRVTEVQRlQAQQADAALEEFKRQVELNSEKvyaEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQ 655
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEK-QLNQLKSEISDLNNQKEQDWNK---ELKSELKNQEKKLEEIQN-QISQNNKIISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 656 RYEQQIVELKLEHeQEKTHLLQQHNAEKDSLVRDHE---REIENLEKQLRAANMEHENQIQEFKKRDAQvIADMEAQVHK 732
Cdd:TIGR04523 346 QLKKELTNSESEN-SEKQRELEEKQNEIEKLKKENQsykQEIKNLESQINDLESKIQNQEKLNQQKDEQ-IKKLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 733 LREELINVNSQRKQQLVELGLLREEEKQRatrehEIVVNKLKAESEKMKIELKkthaaETEMTLEKANSKLKQIEKEYTQ 812
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVK-----ELIIKNLDNTRESLETQLK-----VLSRSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 813 KLAKSSQIIAE---LQTTISSLKEENS---QQQLAAERRLQDVRQKFEDEKKQLIRDnDQAIKVLQDELENRSNQVRCAE 886
Cdd:TIGR04523 494 KEKELKKLNEEkkeLEEKVKDLTKKISslkEKIEKLESEKKEKESKISDLEDELNKD-DFELKKENLEKEIDEKNKEIEE 572
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1212619496 887 KKLQHKELE-SQEQITYIRQEYETKLKGLMpaSLRQELEDTISSLKSQVNFLQK 939
Cdd:TIGR04523 573 LKQTQKSLKkKQEEKQELIDQKEKEKKDLI--KEIEEKEKKISSLEKELEKAKK 624
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
516-905 |
5.44e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 516 LKQQLQESELQRKQQLRDQE-NKFQMEKSHLKHIYEKKAHDLQ-SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR 593
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEaANRQREKEKERYKRDREQWERQrRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 594 LQAQQADAALE--EFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK---QSKEFLWQLEDIRQRYEQQIVELKleH 668
Cdd:pfam07888 112 ELSEEKDALLAqrAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKagaQRKEEEAERKQLQAKLQQTEEELR--S 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 669 EQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANM-EHENQIQEFKKRDAQVIADM-EAQVHKLREELINVNSQRKQ 746
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRkEAENEALLEELRSLQERLNAsERKVEGLGEELSSMAAQRDR 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 747 QLVELGLLREEEKQratreheiVVNKLKAESEKMKiELKKTHAAETEMTLEKAnsklkQIEKEYTQKLAkssqiiAELQT 826
Cdd:pfam07888 270 TQAELHQARLQAAQ--------LTLQLADASLALR-EGRARWAQERETLQQSA-----EADKDRIEKLS------AELQR 329
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1212619496 827 TISSLKEENSQqqlaaerrlqdvRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQ 905
Cdd:pfam07888 330 LEERLQEERME------------REKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQ 396
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
603-811 |
5.75e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 603 LEEFKRQVELNSEKVYAEMKEQMEKVEadltrskslrekqskeflwQLEDIRQRYEQQIVELK--------LEHEQEKTH 674
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEIS-------------------ELENEIKELEQEIERLEpwgnfdldLSLLLGFKY 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 675 LlqqhnaekdsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELiNVNSQRKQQLVELGLL 754
Cdd:PRK05771 145 V----------SVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTP 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1212619496 755 RE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHaAETEMTLEKANSKLKQIEKEYT 811
Cdd:PRK05771 214 SElireikEELEEIEKERESLLEELKELAKKYLEELLALY-EYLEIELERAEALSKFLKTDKT 275
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
506-911 |
6.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 506 IEELEQNVCQLKQQLQE--SELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQ-SELDKGKEDTQKKIHKFEEALKEKE 582
Cdd:COG4717 73 LKELEEELKEAEEKEEEyaELQEELEELEEELEELEAELEELREELEKLEKLLQlLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 583 EQLTRVTEVQRlQAQQADAALEEFKRQVELNSEKVYAEMKEQMEkveadltrskslrekqskEFLWQLEDIRQRYEQQIV 662
Cdd:COG4717 153 ERLEELRELEE-ELEELEAELAELQEELEELLEQLSLATEEELQ------------------DLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 663 ELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAA------------NMEHENQIQEFKKRDAQVIADMEAQV 730
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 731 HKLREELINvNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEY 810
Cdd:COG4717 294 AREKASLGK-EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 811 TQKLAKSS-----------QIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENrs 879
Cdd:COG4717 373 AALLAEAGvedeeelraalEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEE-- 450
|
410 420 430
....*....|....*....|....*....|..
gi 1212619496 880 NQVRCAEKKLQHKELESQEQITYIRQEYETKL 911
Cdd:COG4717 451 LREELAELEAELEQLEEDGELAELLQELEELK 482
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
744-952 |
6.48e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 744 RKQQLVELGLLREEEK----QRATREHEIV---VNKLKAESEKMKI---ELKKTHAAETEMTLEKANSKLKQIEKEYTQK 813
Cdd:PRK05771 26 HELGVVHIEDLKEELSnerlRKLRSLLTKLseaLDKLRSYLPKLNPlreEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 814 LAKssqiIAELQTTISSLKEENSQQQ--------LAAERRLQDVRQKF----EDEKKQLIRDNDQAIKVLQDELENRSNQ 881
Cdd:PRK05771 106 EEE----ISELENEIKELEQEIERLEpwgnfdldLSLLLGFKYVSVFVgtvpEDKLEELKLESDVENVEYISTDKGYVYV 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1212619496 882 VRCAEKKLQHKELESQEQITYIRQEYETKLKglmPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQ 952
Cdd:PRK05771 182 VVVVLKELSDEVEEELKKLGFERLELEEEGT---PSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
781-940 |
6.52e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 781 KIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQI------------IAELQTTISSLKEE-----NSQQQLAA- 842
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrlaeyswdeidVASAEREIAELEAElerldASSDDLAAl 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 843 ERRLQDVRQKFEDEKKQLIRDNDQAIKvLQDELENRSNQVRCAEKKLQHKE-LESQEQITYIRQEYETKLKGLMPASLRQ 921
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGR-LEKELEQAEEELDELQDRLEAAEdLARLELRALLEERFAAALGDAVERELRE 769
|
170
....*....|....*....
gi 1212619496 922 ELEDTISSLKSQVNFLQKR 940
Cdd:COG4913 770 NLEERIDALRARLNRAEEE 788
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
315-890 |
7.04e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 7.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 315 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndwekklhnavAEMEQEKFDLQKQHTENIQELledtnvrlNK 394
Cdd:pfam05557 32 LEKKASALKRQLDRESDRNQELQKRIRLLEKREAEA-------------EEALREQAELNRLKKKYLEAL--------NK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 395 MESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKeKDHLVNDYE 474
Cdd:pfam05557 91 KLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK-QQSSLAEAE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 475 QNMKLLQTKydadinLLKQEHALSASKASSmieeleqnvcqlKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAH 554
Cdd:pfam05557 170 QRIKELEFE------IQSQEQDSEIVKNSK------------SELARIPELEKELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 555 DLQSELDKgKEDTQKKIHKFE---EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQveLNSEKVYAEMKEQMEKVEAD 631
Cdd:pfam05557 232 DLKRKLER-EEKYREEAATLElekEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQL--QQREIVLKEENSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 632 LTRSKSLREKQSKEFLWQLEDIRQRYEQQivELKLEHEQEKTHLLQQHNAEKDSLVR--DHEREIENLEKQLRAANMEHE 709
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRH--KALVRRLQRRVLLLTKERDGYRAILEsyDKELTMSNYSPQLLERIEEAE 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 710 NQIQEFKKRDAQviadMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 789
Cdd:pfam05557 387 DMTQKMQAHNEE----MEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 790 AETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSlkeeNSQQQLAAE-RRLQDVRQKFEDEKKQLIRDNDQAI 868
Cdd:pfam05557 463 QKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRK----NQLEKLQAEiERLKRLLKKLEDDLEQVLRLPETTS 538
|
570 580
....*....|....*....|..
gi 1212619496 869 KVLQDELENRSNQVRCAEKKLQ 890
Cdd:pfam05557 539 TMNFKEVLDLRKELESAELKNQ 560
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
572-913 |
7.18e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.13 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 572 HKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQmEKVEADLTRSKSLREKQSKEFLWQLE 651
Cdd:pfam09731 53 EDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEE-KEATKDAAEAKAQLPKSEQEKEKALE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 652 DIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKrdaqVIADMEAQVH 731
Cdd:pfam09731 132 EVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALAEKLKE----VINLAKQSEE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 732 KLREELINVNSQRKQQLVELGLLREEEKQRATREhEIVVNKLKAESEKMKIELKkthaAETEMTLEKANSKLKQIEKEYT 811
Cdd:pfam09731 208 EAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSL-AKLVDQYKELVASERIVFQ----QELVSIFPDIIPVLKEDNLLSN 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 812 QKLAKssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKvlqdelenrsnqvRCAEKKLQH 891
Cdd:pfam09731 283 DDLNS---LIAHAHREIDQLSKKLAELKKREEKHIERALEKQKEELDKLAEELSARLE-------------EVRAADEAQ 346
|
330 340
....*....|....*....|..
gi 1212619496 892 KELESQEQITYIRQEYETKLKG 913
Cdd:pfam09731 347 LRLEFEREREEIRESYEEKLRT 368
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
537-954 |
7.44e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 40.27 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 537 KFQMEKSHLKHIYEKKAHDLQSELDKGKED---TQKKIHKFEEALKEKEEQLTRVTEVQR----LQAQQADAALEEFKRQ 609
Cdd:pfam15964 217 KWRLELEKLKLLYEAKTEVLESQVKSLRKDlaeSQKTCEDLKERLKHKESLVAASTSSRVgglcLKCAQHEAVLAQTHTN 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 610 VELNSekVYAEMKEQMEKVEADLTRSKSLREKQSKEFlwqledirQRYEQ--QIVELKLEHEQEKTHLLQQHNAEKDSLV 687
Cdd:pfam15964 297 VHMQT--IERLTKERDDLMSALVSVRSSLAEAQQRES--------SAYEQvkQAVQMTEEANFEKTKALIQCEQLKSELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 688 RDHEREIENLEKQLRAANMEHENQIQEFKKRD----------AQVIADMEAQVHKLREELINVNSQRKQQLVELGlLREE 757
Cdd:pfam15964 367 RQKERLEKELASQQEKRAQEKEALRKEMKKEReelgatmlalSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLA-SQEM 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 758 EKQRATREHEIVVNKLKAESEKMKIELKKtHAAETEMTLEKANSKLKQIE---KEYTQKLAKSSQIIAELQTTISSLKEE 834
Cdd:pfam15964 446 DVTKVCGEMRYQLNQTKMKKDEAEKEHRE-YRTKTGRQLEIKDQEIEKLGlelSESKQRLEQAQQDAARAREECLKLTEL 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 835 NSQqqlaAERRLQDVRQkfEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQE-YETKLKG 913
Cdd:pfam15964 525 LGE----SEHQLHLTRL--EKESIQQSFSNEAKAQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNtFIAKLKE 598
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1212619496 914 LMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 954
Cdd:pfam15964 599 EC-CTLAKKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKR 638
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
253-443 |
7.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 253 REKELDMKTKMMEAKfhEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHE---TEETIRKLEKKVQTLIRDCQVI 329
Cdd:COG4942 25 AEAELEQLQQEIAEL--EKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 330 RETKEDQIAELKKICEQSTESL---NNDWEK-----KLHNAVAEMEQEKFDLQKQHTENIQEL---LEDTNVRLNKMESE 398
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllsPEDFLDavrrlQYLKYLAPARREQAEELRADLAELAALraeLEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1212619496 399 YMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELER 443
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
683-935 |
8.57e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.03 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 683 KDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRA 762
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDE 1076
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 763 TREHEIV--------------------VNKLKAESEKMKIELKKTHAAETE-MTLEKANSKLKQIEKEYTQKLAKSSQII 821
Cdd:PTZ00108 1077 DDEEELGaavsydyllsmpiwsltkekVEKLNAELEKKEKELEKLKNTTPKdMWLEDLDKFEEALEEQEEVEEKEIAKEQ 1156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1212619496 822 AELQTTISSLKEENSQQQLAAERRlqdvrqkfedeKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQIT 901
Cdd:PTZ00108 1157 RLKSKTKGKASKLRKPKLKKKEKK-----------KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQ 1225
|
250 260 270
....*....|....*....|....*....|....
gi 1212619496 902 YIRQEYETKLKGlmPASLRQELEDTISSLKSQVN 935
Cdd:PTZ00108 1226 EDDEEQKTKPKK--SSVKRLKSKKNNSSKSSEDN 1257
|
|
| |
