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Conserved domains on  [gi|1391723997|ref|NP_001350531|]
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NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial isoform 2 [Homo sapiens]

Protein Classification

NADH-quinone oxidoreductase subunit B family protein( domain architecture ID 10012723)

NADH-quinone oxidoreductase subunit B (NuoB) is the bacterial complex I 20 kDa subunit family protein, similar to mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
Gene Ontology:  GO:0051539|GO:0048038|GO:0008137|GO:0045271
PubMed:  23417064|1470679|33957129
SCOP:  4007641

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
63-181 4.07e-92

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 266.07  E-value: 4.07e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK06411   21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1391723997 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:PRK06411  101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVP 139
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
63-181 4.07e-92

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 266.07  E-value: 4.07e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK06411   21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1391723997 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:PRK06411  101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVP 139
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 64-181 3.49e-87

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 252.41  E-value: 3.49e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:COG0377     1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1391723997 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:COG0377    81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVP 119
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 63-181 8.61e-84

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 243.80  E-value: 8.61e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG-VVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:TIGR01957   3 LLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQM 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1391723997 142 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:TIGR01957  83 PEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIP 122
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
89-181 4.69e-27

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 98.81  E-value: 4.69e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  89 CAVEMMHMAAPRYDM-----DRFGVVFRASPR----QSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100
                  ....*....|....*....|....*.
gi 1391723997 160 YH----YSYSvVRGCDRIVPVDIYIP 181
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIP 108
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
63-181 4.07e-92

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 266.07  E-value: 4.07e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK06411   21 VLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMP 100

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1391723997 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:PRK06411  101 EPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVP 139
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 64-181 3.49e-87

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 252.41  E-value: 3.49e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:COG0377     1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1391723997 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:COG0377    81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVP 119
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 63-181 8.61e-84

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 243.80  E-value: 8.61e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG-VVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:TIGR01957   3 LLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQM 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1391723997 142 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:TIGR01957  83 PEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIP 122
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 58-181 2.83e-58

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 180.85  E-value: 2.83e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  58 SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 137
Cdd:PRK14813    9 SNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRL 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1391723997 138 YDQMPEPRYVVSMGSCANGGG-YYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:PRK14813   89 YEQMPEPRYVLSMGSCSNCGGpYWEHGYHVLKGVDRIIPVDVYVP 133
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
67-181 7.46e-57

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 179.41  E-value: 7.46e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  67 LDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 145
Cdd:PRK14819   21 VNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPR 100

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1391723997 146 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:PRK14819  101 YVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIP 136
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 62-181 9.34e-57

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 176.30  E-value: 9.34e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  62 YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:PRK14818   16 LHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQM 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1391723997 142 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:PRK14818   96 PEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVP 135
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
64-181 1.37e-55

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 173.56  E-value: 1.37e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK14816   28 VGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLYDQMA 107

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1391723997 143 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
Cdd:PRK14816  108 DPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIP 146
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 60-180 2.18e-54

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 170.47  E-value: 2.18e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  60 GEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVY 138
Cdd:PRK14815   16 GNVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRRIY 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1391723997 139 DQMPEPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYI 180
Cdd:PRK14815   96 DQMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYI 136
ndhK CHL00023
NADH dehydrogenase subunit K
 67-181 2.09e-53

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 169.50  E-value: 2.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  67 LDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 146
Cdd:CHL00023   22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKY 101

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1391723997 147 VVSMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYIP 181
Cdd:CHL00023  102 VIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLP 137
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
63-181 1.54e-52

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 178.82  E-value: 1.54e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  63 VVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGV-VFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 141
Cdd:PRK13292    8 LLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSILRLYEQM 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1391723997 142 PEPRYVVSMGSCANGGGYYHYsYSVVRGCDRIVPVDIYIP 181
Cdd:PRK13292   88 AEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIP 126
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
48-181 2.04e-44

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 144.97  E-value: 2.04e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  48 KARAVAPKPSSRGE-YVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFG---VVFraSPRQSDVMIVA 123
Cdd:PRK14820    3 DIKIVEAPEGYEGEgFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGserPSF--SPRQADMLMVM 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1391723997 124 GTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYIP 181
Cdd:PRK14820   81 GTIAKKMAPVLKQVYLQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVP 137
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 64-181 1.30e-43

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 143.24  E-value: 1.30e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRA-SPRQSDVMIVAGTLTNKMAPALRKVYDQMP 142
Cdd:PRK14814   20 LGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSfSPRQADMILVLGTITYKMAPVLRQIYDQMA 99

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1391723997 143 EPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYIP 181
Cdd:PRK14814  100 EPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVP 137
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
53-181 1.62e-42

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 140.48  E-value: 1.62e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  53 APKPSSRGEYVVAKLDDLVN----WARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVF-RASPRQSDVMIVAGTLT 127
Cdd:PRK14817    7 LPVIATRREEAEGFLQGLVSkslgWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMpRFSPRQADLLMVVGTVN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1391723997 128 NKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHySYSVVRGCDRIVPVDIYIP 181
Cdd:PRK14817   87 CKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVP 139
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
89-181 2.42e-39

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 130.68  E-value: 2.42e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 168
Cdd:COG3260    20 CEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCACSGGVFRDSYAVLG 99

                          90
                  ....*....|...
gi 1391723997 169 GCDRIVPVDIYIP 181
Cdd:COG3260   100 GVDKVIPVDVYIP 112
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
89-181 4.69e-27

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 98.81  E-value: 4.69e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391723997  89 CAVEMMHMAAPRYDM-----DRFGVVFRASPR----QSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100
                  ....*....|....*....|....*.
gi 1391723997 160 YH----YSYSvVRGCDRIVPVDIYIP 181
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIP 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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