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Conserved domains on  [gi|1433354039|ref|NP_001351986|]
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uncharacterized protein C9orf85 isoform 4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2039 super family cl10906
Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 ...
 14-69 1.62e-23

Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.


The actual alignment was detected with superfamily member pfam10217:

Pssm-ID: 463003  Cd Length: 89  Bit Score: 84.26  E-value: 1.62e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1433354039 14 QKHQNTFSFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKK 69
Cdd:pfam10217  1 QKHQNRVAFKNNRHDKSKKTKKINALPISGVCQRCKDIIEWKKKYGKYKPLTQPGK 56
 
Name Accession Description Interval E-value
DUF2039 pfam10217
Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 ...
 14-69 1.62e-23

Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.


Pssm-ID: 463003  Cd Length: 89  Bit Score: 84.26  E-value: 1.62e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1433354039 14 QKHQNTFSFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKK 69
Cdd:pfam10217  1 QKHQNRVAFKNNRHDKSKKTKKINALPISGVCQRCKDIIEWKKKYGKYKPLTQPGK 56
 
Name Accession Description Interval E-value
DUF2039 pfam10217
Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 ...
 14-69 1.62e-23

Uncharacterized conserved protein (DUF2039); This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.


Pssm-ID: 463003  Cd Length: 89  Bit Score: 84.26  E-value: 1.62e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1433354039 14 QKHQNTFSFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKK 69
Cdd:pfam10217  1 QKHQNRVAFKNNRHDKSKKTKKINALPISGVCQRCKDIIEWKKKYGKYKPLTQPGK 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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