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Conserved domains on  [gi|1476587917|ref|NP_001352821|]
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coiled-coil domain-containing protein 188 [Homo sapiens]

Protein Classification

bZIP transcription factor( domain architecture ID 229439)

basic leucine zipper (bZIP) transcription factor binds to the promoter regions of genes to control their expression

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMCO5 super family cl25931
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing ...
359-401 7.54e-05

TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing proteins 5A and 5B.


The actual alignment was detected with superfamily member pfam14992:

Pssm-ID: 464427 [Multi-domain]  Cd Length: 278  Bit Score: 43.94  E-value: 7.54e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1476587917 359 YVYVVNPTPFEGLVPPLLSRATVWKLRALLDPFLRLKVDGFLP 401
Cdd:pfam14992 236 HLQYINPDLLVDTLPKMLSRRTLWRLRCFLFPFLTLEVEDLLP 278
bZIP super family cl21462
Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and ...
158-184 2.22e-03

Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain; Basic leucine zipper (bZIP) factors comprise one of the most important classes of enhancer-type transcription factors. They act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes including cell survival, learning and memory, lipid metabolism, and cancer progression, among others. They also play important roles in responses to stimuli or stress signals such as cytokines, genotoxic agents, or physiological stresses. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.


The actual alignment was detected with superfamily member cd14700:

Pssm-ID: 473870 [Multi-domain]  Cd Length: 52  Bit Score: 35.72  E-value: 2.22e-03
                          10        20
                  ....*....|....*....|....*..
gi 1476587917 158 SAEQSFLQLEQENHSLKRQNQELREQL 184
Cdd:cd14700    25 SLETKLEQLKQENQKLKSENETLRERL 51
 
Name Accession Description Interval E-value
TMCO5 pfam14992
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing ...
359-401 7.54e-05

TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing proteins 5A and 5B.


Pssm-ID: 464427 [Multi-domain]  Cd Length: 278  Bit Score: 43.94  E-value: 7.54e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1476587917 359 YVYVVNPTPFEGLVPPLLSRATVWKLRALLDPFLRLKVDGFLP 401
Cdd:pfam14992 236 HLQYINPDLLVDTLPKMLSRRTLWRLRCFLFPFLTLEVEDLLP 278
bZIP_ATF6 cd14700
Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar ...
158-184 2.22e-03

Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain; ATF-6 is a type I membrane-bound Basic leucine zipper (bZIP) transcription factor that binds to the consensus ER stress response element (ERSE) and enhances the transcription of genes encoding glucose-regulated proteins Grp78, Grp94, and calreticulum. ATF-6 is one of three sensors of the unfolded protein response (UPR) in metazoans; the others being the kinases Ire1 and PERK. It contains an ER-lumenal domain that detects unfolded proteins. In response to ER stress, ATF-6 translocates from the ER to the Golgi with simultaneous cleavage in a process called regulated intramembrane proteolysis (Rip) to its transcriptionally competent form, which enters the nucleus and upregulates target UPR genes. The three UPR sensor branches cross-communicate to form a signaling network. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.


Pssm-ID: 269848 [Multi-domain]  Cd Length: 52  Bit Score: 35.72  E-value: 2.22e-03
                          10        20
                  ....*....|....*....|....*..
gi 1476587917 158 SAEQSFLQLEQENHSLKRQNQELREQL 184
Cdd:cd14700    25 SLETKLEQLKQENQKLKSENETLRERL 51
 
Name Accession Description Interval E-value
TMCO5 pfam14992
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing ...
359-401 7.54e-05

TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing proteins 5A and 5B.


Pssm-ID: 464427 [Multi-domain]  Cd Length: 278  Bit Score: 43.94  E-value: 7.54e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1476587917 359 YVYVVNPTPFEGLVPPLLSRATVWKLRALLDPFLRLKVDGFLP 401
Cdd:pfam14992 236 HLQYINPDLLVDTLPKMLSRRTLWRLRCFLFPFLTLEVEDLLP 278
bZIP_ATF6 cd14700
Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar ...
158-184 2.22e-03

Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain; ATF-6 is a type I membrane-bound Basic leucine zipper (bZIP) transcription factor that binds to the consensus ER stress response element (ERSE) and enhances the transcription of genes encoding glucose-regulated proteins Grp78, Grp94, and calreticulum. ATF-6 is one of three sensors of the unfolded protein response (UPR) in metazoans; the others being the kinases Ire1 and PERK. It contains an ER-lumenal domain that detects unfolded proteins. In response to ER stress, ATF-6 translocates from the ER to the Golgi with simultaneous cleavage in a process called regulated intramembrane proteolysis (Rip) to its transcriptionally competent form, which enters the nucleus and upregulates target UPR genes. The three UPR sensor branches cross-communicate to form a signaling network. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.


Pssm-ID: 269848 [Multi-domain]  Cd Length: 52  Bit Score: 35.72  E-value: 2.22e-03
                          10        20
                  ....*....|....*....|....*..
gi 1476587917 158 SAEQSFLQLEQENHSLKRQNQELREQL 184
Cdd:cd14700    25 SLETKLEQLKQENQKLKSENETLRERL 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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