|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
408-935 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 769.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 408 QVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGP-- 485
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 486 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 565
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 566 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 645
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 646 LQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEG 725
Cdd:pfam15070 241 LQQYVAAYQQLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 726 DGLDREEEEDEeeeeeeavaVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKE 805
Cdd:pfam15070 321 DGLESEEEEEE---------APRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 806 PEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLK 885
Cdd:pfam15070 392 PEHEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1955630580 886 ERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQ 935
Cdd:pfam15070 472 QRHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
980-1025 |
2.35e-26 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 102.08 E-value: 2.35e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1955630580 980 SPRDNPTAQQIMQLLREMQNPRERPGLGSNPCIPFFYRADENDEVK 1025
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
216-941 |
7.15e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 7.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 216 QQNQEITDQLEE--------EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQY 287
Cdd:TIGR02168 213 ERYKELKAELRElelallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 288 SRRRVGELERALSAVSTQQKKADRYNKELTKERDALRlelykntQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQK 367
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 368 KLEMTELLLQQfsSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKG-ESAMWRQRMQQMSEQVH 446
Cdd:TIGR02168 366 ELEELESRLEE--LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 447 TLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQVQDNEGLS 521
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarldsLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 522 RLNREQEERLLELERAAELWG--------EQAEARRQILETM-QND--RTTI----SRALSQNRELKEQLAELQSGFVKL 586
Cdd:TIGR02168 524 VLSELISVDEGYEAAIEAALGgrlqavvvENLNAAKKAIAFLkQNElgRVTFlpldSIKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 587 TNE-----------------NMEITSALQSEQHVKRELGKK--LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQ 647
Cdd:TIGR02168 604 AKDlvkfdpklrkalsyllgGVLVVDDLDNALELAKKLRPGyrIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 648 QYVAAYQQLTSEKEVLHNQLLlqtQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDG 727
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELR---KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 728 LDREEEEDEEEEEEEAVAVpqpmpsIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPE 807
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAE------AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 808 AaapapgtggdsvCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 887
Cdd:TIGR02168 835 A------------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1955630580 888 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQNPADEP 941
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
189-914 |
1.87e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 1.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 189 RYQQLAVALDssyvtNKQLNITIEKLKQQNQEItDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQ 268
Cdd:TIGR02168 214 RYKELKAELR-----ELELALLVLRLEELREEL-EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 269 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ----QKKADRYNKELT----------KERDALRLELYKNTQSN 334
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQleelESKLDELAEELAeleekleelkEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 335 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 414
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 415 QLQMERDKYA------ENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPseV 488
Cdd:TIGR02168 448 ELEELQEELErleealEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV--L 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 489 EQQLQAEAEhLRKELE-GLAGQLQAQVQDNE------------------GLSRLNREQEERLLELERAAELWGEQAEARR 549
Cdd:TIGR02168 526 SELISVDEG-YEAAIEaALGGRLQAVVVENLnaakkaiaflkqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 550 QILETMQND--------------RTTISRALSQNRELKEQLA-------ELQSGFVKLTNENMEITSALQSEQHVKrELG 608
Cdd:TIGR02168 605 KDLVKFDPKlrkalsyllggvlvVDDLDNALELAKKLRPGYRivtldgdLVRPGGVITGGSAKTNSSILERRREIE-ELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 609 KKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVA 688
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 689 EMARQELQETQERLEAATQQNQQLRAQLslmahpgeGDGLDREEeedeeeeeeeavavpqpmpSIPEDLESREAMVAFFN 768
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQI--------EQLKEELK-------------------ALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 769 SAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPApgtggdsvcgetHRALQGAMEKLQSRFMELMQEKAD 848
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE------------IEELEELIEELESELEALLNERAS 884
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630580 849 LKERVEELEHRCIQLSGETDTIGEyialyqsQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQE 914
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
181-704 |
2.80e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 2.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 181 ANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALRE----------QLQVHIQTI 250
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEllaelarleqDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 251 GILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKN 330
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 331 TQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL-EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQV 409
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALaELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 410 MESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSR-----VQELETSLAELRNQMAEPPPPEPPAG 484
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagaVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 485 PSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQ-------N 557
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLgrtlvaaR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 558 DRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQ 637
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630580 638 QRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEA 704
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
178-717 |
1.08e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 178 ASSANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQN---QEITDQLEEEKKECHQKQGALREQLQVHIQTIGILV 254
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLdelAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 255 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRV----GELERALSAVSTQQKKADRYNKELTKER-DALRLELYK 329
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 330 NTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEA-----------PDANQQLQQAMEE 398
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGvkallknqsglSGILGVLSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 399 RAQLEA--------HLGQV----------------------------------------------MESVRQLQMERDKYA 424
Cdd:TIGR02168 532 DEGYEAaieaalggRLQAVvvenlnaakkaiaflkqnelgrvtflpldsikgteiqgndreilknIEGFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 425 ENLKG---------------ESAMWRQRMQQMSEQVHTL------------REEKECSMSRvQELETSLAELRNQMAEPP 477
Cdd:TIGR02168 612 PKLRKalsyllggvlvvddlDNALELAKKLRPGYRIVTLdgdlvrpggvitGGSAKTNSSI-LERRREIEELEEKIEELE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 478 PPeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQN 557
Cdd:TIGR02168 691 EK---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 558 DRTTISRALSQNR----ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQ 633
Cdd:TIGR02168 762 EIEELEERLEEAEeelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 634 SLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLR 713
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
....
gi 1955630580 714 AQLS 717
Cdd:TIGR02168 922 EKLA 925
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
438-919 |
2.40e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 438 MQQMSEQVHTLREEKECSMsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ---LQAEAEHLRKELEGLAGQL---- 510
Cdd:COG1196 195 LGELERQLEPLERQAEKAE-RYRELKEELKELEAELLLLKLRELEAELEELEAEleeLEAELEELEAELAELEAELeelr 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 511 QAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNEN 590
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 591 MEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQ 670
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 671 TQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLS-------------------LMAHPGEGDGLDRE 731
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAelleelaeaaarllllleaEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 732 EEEDEEEEEEEAVAVPQPMPSIPEDLEsREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAP 811
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAAL-EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 812 APGTGGDSVcgETHRALQGAMEKLQSRFMELMQEKADLKERVE-------ELEHRCIQLSGETDTIGEYIALYQSQRAVL 884
Cdd:COG1196 593 ARGAIGAAV--DLVASDLREADARYYVLGDTLLGRTLVAARLEaalrravTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510
....*....|....*....|....*....|....*
gi 1955630580 885 KERHREKEEYISRLAQDKEEMKVKLLELQELVLRL 919
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
361-708 |
4.15e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 4.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 361 NLEELQKKLEMTELLLQqfssrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQ 440
Cdd:TIGR02168 678 EIEELEEKIEELEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 441 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPppeppagpsEVEQQLQAEAEHLRKELEGLAGQLQAqvqdnegL 520
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---------AQIEQLKEELKALREALDELRAELTL-------L 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 521 SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNE-------NMEI 593
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNErasleeaLALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 594 TSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDqylgHLQQYVAAYQQLTSEK-EVLHNQLLLQTQ 672
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID----NLQERLSEEYSLTLEEaEALENKIEDDEE 968
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1955630580 673 L----VDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 708
Cdd:TIGR02168 969 EarrrLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
292-724 |
5.15e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 69.80 E-value: 5.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 292 VGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEM 371
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 372 TELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREE 451
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 452 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERL 531
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 532 LELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQHVKRELgKKL 611
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG---LPPDLSPEELLELLDRIEELQELL-REA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 612 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYvAAYQQLTSEKEVLHNQLLLQTQLVDQL--QQQEAQGKAVAE 689
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELleALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|....*
gi 1955630580 690 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGE 724
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
219-857 |
3.14e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 219 QEITDQLEE-----EKKECHQKQGALREQLQVHIqtigiLVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVG 293
Cdd:COG1196 196 GELERQLEPlerqaEKAERYRELKEELKELEAEL-----LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 294 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTE 373
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 374 LLLQQfssrceapdANQQLQQAMEERAQLEAhlgQVMESVRQLQMERDKYAENLKGESAMwRQRMQQMSEQVHTLREEKE 453
Cdd:COG1196 351 EELEE---------AEAELAEAEEALLEAEA---ELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 454 CSMSRVQELETSLAELRNQmAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLE 533
Cdd:COG1196 418 RLEEELEELEEALAELEEE-EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 534 LERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGE 613
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 614 LQekLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQltsekeVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQ 693
Cdd:COG1196 577 LP--LDKIRARAALAAALARGAIGAAVDLVASDLREADARYY------VLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 694 ELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVAS 773
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL----------LAEEEEERELAEAEEERLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 774 AEEEQARLRGQLKEQRVrcRRLAHLLASAQKEPEAAAPAPGTGGD-SVCGETHRALQGAMEKL--------------QSR 838
Cdd:COG1196 719 EELEEEALEEQLEAERE--ELLEELLEEEELLEEEALEELPEPPDlEELERELERLEREIEALgpvnllaieeyeelEER 796
|
650
....*....|....*....
gi 1955630580 839 FMELMQEKADLKERVEELE 857
Cdd:COG1196 797 YDFLSEQREDLEEARETLE 815
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
180-472 |
4.41e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 4.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 180 SANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKEC---HQKQGALREQLQVHIQTIGILVSE 256
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLarlEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 257 KAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ--------QKKADRYNK-------------E 315
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneeaANLRERLESlerriaaterrleD 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 316 LTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQLQQA 395
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE--ELSEELRELESKRSELRRELEEL 920
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630580 396 MEERAQLEAHLGqvmesvrQLQMERDKYAENLKGESAMwrqrMQQMSEQVHTLREEKEcsmsrvQELETSLAELRNQ 472
Cdd:TIGR02168 921 REKLAQLELRLE-------GLEVRIDNLQERLSEEYSL----TLEEAEALENKIEDDE------EEARRRLKRLENK 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
211-914 |
5.68e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 5.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 211 IEKLKQQNQEITDQLEEEKKECHQKQgALREQLQVHIQTIGilVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRR 290
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIE-QLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 291 RVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLE 370
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 371 mtelllqqfSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLRE 450
Cdd:TIGR02169 403 ---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQ 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 451 EKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQqlQAEAEHLRKELEGLAGQ--------------------- 509
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG--RAVEEVLKASIQGVHGTvaqlgsvgeryataievaagn 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 510 -LQAQVQDNEG-------------LSR-----LNREQEERLLELERAAELWGEQA-----------EARRQILETmqndr 559
Cdd:TIGR02169 548 rLNNVVVEDDAvakeaiellkrrkAGRatflpLNKMRDERRDLSILSEDGVIGFAvdlvefdpkyePAFKYVFGD----- 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 560 TTISRALSQNRELKEQLAelqsgFVKLTNENME----ITS---ALQSEQHVKRELGKKLGELQEKLSELKetvelksQEA 632
Cdd:TIGR02169 623 TLVVEDIEAARRLMGKYR-----MVTLEGELFEksgaMTGgsrAPRGGILFSRSEPAELQRLRERLEGLK-------REL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 633 QSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLllqtqlvDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQL 712
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 713 RAQLSLMahpgegdgldreeeEDEEEEEEEAVavpqpmpsipEDLESREAMVAF--FNSAVASAEEEQARLRGQLKEQRV 790
Cdd:TIGR02169 764 EARIEEL--------------EEDLHKLEEAL----------NDLEARLSHSRIpeIQAELSKLEEEVSRIEARLREIEQ 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 791 RCRRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTI 870
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQ------------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1955630580 871 GEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQE 914
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
205-704 |
1.27e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 205 KQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALreqLQVHIQTIGILVSEKAELQTALAHTQHAAR------QKEGES 278
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---LQQHQDRIEQLISEHEVEITGLTEKASSARsqansiQSQLEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 279 EDLASRLQYSR--RRVGELERALSAVSTQQKKADRYNK----ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLV 352
Cdd:pfam15921 304 IQEQARNQNSMymRQLSDLESTVSQLRSELREAKRMYEdkieELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 353 TE--KAGMQLNLEELQKKlemtELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLgQVMESVRQLQMERDKYAENLKGE 430
Cdd:pfam15921 384 ADlhKREKELSLEKEQNK----RLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL-KAMKSECQGQMERQMAAIQGKNE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 431 SamwrqrMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQ 509
Cdd:pfam15921 459 S------LEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAiEATNAEITKLRSRVDLKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 510 LQAQVQDNEGLSRLNREQEERLLELERAAELwgeqAEARRQILETMQNDRTTISRALSQNRELKEQLAElqsgfvKLTNE 589
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEALKLQMAEKDKV----IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEK------EINDR 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 590 NMEitsaLQSEQHVKRELGKKLGELQEKLSELK-ETVEL------KSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEV 662
Cdd:pfam15921 603 RLE----LQEFKILKDKKDAKIRELEARVSDLElEKVKLvnagseRLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEV 678
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1955630580 663 LHNQLLLQTQlvdQLQQQEAQGKAVAEMARQELQETQERLEA 704
Cdd:pfam15921 679 LKRNFRNKSE---EMETTTNKLKMQLKSAQSELEQTRNTLKS 717
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
203-714 |
3.32e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 203 TNKQLNITIEKLKQQNQEIT------DQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEG 276
Cdd:PRK02224 235 TRDEADEVLEEHEERREELEtleaeiEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 277 ESEDLASRLQYSRRRVGELERALSAVSTQQ-------KKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLR 349
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAeslredaDDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 350 VLVTEKAGMQLNLEELQKKLEMTElllqqfssrceapdanQQLQQAMEERAQLEAHLGQVMESVRQLQMERDkyaenlKG 429
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELR----------------EERDELREREAELEATLRTARERVEEAEALLE------AG 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 430 ESAMWRQRMQQmSEQVHTLREEKEcsmsRVQELETSLAELRNQMAEPPPP-EPPAGPSEVEQQLQAEAEHlRKELEGLAG 508
Cdd:PRK02224 453 KCPECGQPVEG-SPHVETIEEDRE----RVEELEAELEDLEEEVEEVEERlERAEDLVEAEDRIERLEER-REDLEELIA 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 509 QLQAQV-QDNEGLSRLNreqeERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLT 587
Cdd:PRK02224 527 ERRETIeEKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 588 NENMEITS---ALQSEQHVKRELGKKLGELQEKLSELKETV-ELKSQEAQSLQQQRDQYLGHLQQYVaayQQLTSEKEVL 663
Cdd:PRK02224 603 DAEDEIERlreKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKL---DELREERDDL 679
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1955630580 664 HNQLLLQTQLVDQLQQQEAQgkavaemaRQELQETQERLEAATQQNQQLRA 714
Cdd:PRK02224 680 QAEIGAVENELEELEELRER--------REALENRVEALEALYDEAEELES 722
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-716 |
8.95e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 8.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 204 NKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIgilvSEKAELQTALAHTQHAARQKEGESEDLAS 283
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLK----DEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 284 RLQYSRRRVGELERALSAVSTQQKKADRYNKEltKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLE 363
Cdd:TIGR04523 289 QLNQLKSEISDLNNQKEQDWNKELKSELKNQE--KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 364 ELQKKL-----EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEahlgqvmESVRQLQMERdkyaenlkgesamwrqrm 438
Cdd:TIGR04523 367 EKQNEIeklkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD-------EQIKKLQQEK------------------ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 439 QQMSEQVHTLREEKECSMSRVQELETSLAELRNQMaepppPEPPAGPSEVEQQLQA---EAEHLRKELEGLAGQLQAQVQ 515
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELII-----KNLDNTRESLETQLKVlsrSINKIKQNLEQKQKELKSKEK 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 516 DNEGLSRLNreqeerlleleraaelwgeqaearRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITS 595
Cdd:TIGR04523 497 ELKKLNEEK------------------------KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 596 ALQSEQhvkreLGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYlghlqqyvaayqqlTSEKEVLHNQLLLQTQLVD 675
Cdd:TIGR04523 553 ELKKEN-----LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK--------------EKEKKDLIKEIEEKEKKIS 613
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1955630580 676 QLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQL 716
Cdd:TIGR04523 614 SLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
289-472 |
1.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 289 RRRVGELERALSAVSTQQKKADRYNkelTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 368
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLA---ELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 369 LEMTELLLQQFSSRCEApDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTL 448
Cdd:COG4913 325 LDELEAQIRGNGGDRLE-QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|....
gi 1955630580 449 REEKECSMSRVQELETSLAELRNQ 472
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAE 427
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
223-703 |
1.44e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 223 DQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAV 302
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 303 stqqkkadrynkELTKERDALRLELYKNTQSNEDLKQEKSELEEklrvLVTEKAGMQLNLEELQKKLEmTELLLQQFSSR 382
Cdd:COG4717 129 ------------PLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELE-ELLEQLSLATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 383 CEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAmwRQRMQQMSEQ------VHTLREEKECSM 456
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaaLLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 457 SRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLA-GQLQAQVQDNEGLSRLNREQEERLLELE 535
Cdd:COG4717 270 SLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEElEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 536 RAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQS---------EQHVKRE 606
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeleellEALDEEE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 607 LGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnqlllqtqlvdqlqQQEAQGKA 686
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAEL---------------RELAEEWA 493
|
490
....*....|....*..
gi 1955630580 687 VAEMARQELQETQERLE 703
Cdd:COG4717 494 ALKLALELLEEAREEYR 510
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
449-887 |
1.54e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 449 REEKECSMSRVQELETSLAELRNQMaeppppeppagpseveQQLQAEAEHLRKELEglagqLQAQVQDNEGLSRLNreqe 528
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQL----------------ERLRREREKAERYQA-----LLKEKREYEGYELLK---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 529 erlleleraaelwgEQAEARRQIlETMQNDRTTISRALSQNRELKEQLA-ELQSGFVKLTNENMEITSALQSEQhvkREL 607
Cdd:TIGR02169 231 --------------EKEALERQK-EAIERQLASLEEELEKLTEEISELEkRLEEIEQLLEELNKKIKDLGEEEQ---LRV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 608 GKKLGELQEKLSELKETVELKSQEAQSLQQQRdqylghlQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAV 687
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERL-------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 688 AEMARQELQETQERLEAATQQNQQLRAQLSLMAHpgEGDGLDREEEEDEeeeeeeavavpqpmpsipEDLESREAMVAFF 767
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKR--EINELKRELDRLQ------------------EELQRLSEELADL 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 768 NSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEpeaaapapgtggdsvcgethralqgaMEKLQSRFMELMQEKA 847
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--------------------------LSKYEQELYDLKEEYD 479
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955630580 848 DLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 887
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
257-718 |
1.86e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 257 KAELQTALahtQHAARQKEGESEDLASrlqysrrrVGELERALSAVstqqKKADRYNKELtkerDALRLELyknTQSNED 336
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 337 LKQEKSELE--EKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQL--QQAMEERAQLEahlgqvmes 412
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQAA--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 413 vrqlqmerdkYAENLkgesamwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEppagpsEVEQQ 491
Cdd:PRK11281 165 ----------LYANS--------QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 492 LQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtTISRALSQNRE 571
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 572 LKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELKSQEAQ----- 633
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 634 -SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLLlqtQLVDqlqqqeaqgkavaemARQELQEtqerleaatQQNQ 710
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALL---QLLD---------------ERRELLD---------QLNK 421
|
....*...
gi 1955630580 711 QLRAQLSL 718
Cdd:PRK11281 422 QLNNQLNL 429
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
329-708 |
1.88e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 329 KNTQSNEDLKQEKSELEEKLRvlvtekaGMQLNLEELQKKL------EMTELLLQQFSSRCEapDANQQLQQAMEERAQL 402
Cdd:PRK11281 77 RQKEETEQLKQQLAQAPAKLR-------QAQAELEALKDDNdeetreTLSTLSLRQLESRLA--QTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 403 EAHLgqvmeSVRQLQMERdkyAENLKGESAmwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEp 481
Cdd:PRK11281 148 NSQL-----VSLQTQPER---AQAALYANS---QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 482 pagpsEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtT 561
Cdd:PRK11281 216 -----EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--L 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 562 ISRALSQNRELKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELK 628
Cdd:PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLA 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 629 SQEAQ------SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLL--------LQTQLVDQLQQQEAQGKAVaEMAR 692
Cdd:PRK11281 360 DRIADlrleqfEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALLqllderreLLDQLNKQLNNQLNLAINL-QLNQ 437
|
410
....*....|....*.
gi 1955630580 693 QELQETQERLEAATQQ 708
Cdd:PRK11281 438 QQLLSVSDSLQSTLTQ 453
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
185-918 |
2.22e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 185 DLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEE---KKECHQKQGALREQL-QVHIQTIGILvsekAEL 260
Cdd:pfam15921 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAkclKEDMLEDSNTQIEQLrKMMLSHEGVL----QEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 261 QTALAHTQHAARQKEGESEDLAS-------------------RLQYSRRRVGELERALSAVstqqkKADRYNK-ELTKER 320
Cdd:pfam15921 190 RSILVDFEEASGKKIYEHDSMSTmhfrslgsaiskilreldtEISYLKGRIFPVEDQLEAL-----KSESQNKiELLLQQ 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 321 DALRLElykntQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLE-MTELLLQQFSS--------RCEAPDANQQ 391
Cdd:pfam15921 265 HQDRIE-----QLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARnQNSMYMRQLSDlestvsqlRSELREAKRM 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 392 LQQAMEEraqLEAHLGQVMESVRQLQMERDKYAEnlkgESAMWRQRMQQMSEQVHtlREEKECSMSRVQELETSLAELRN 471
Cdd:pfam15921 340 YEDKIEE---LEKQLVLANSELTEARTERDQFSQ----ESGNLDDQLQKLLADLH--KREKELSLEKEQNKRLWDRDTGN 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 472 QMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQ-DNEGLSRLNREQEERLLELeraaelwgeqaEARRQ 550
Cdd:pfam15921 411 SITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgKNESLEKVSSLTAQLESTK-----------EMLRK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 551 ILETMQNDRTTISralSQNRELKEQLAELQSGFVKLTNENMEITsalqseqhvkrelgkklgelqeklsELKETVELKSQ 630
Cdd:pfam15921 480 VVEELTAKKMTLE---SSERTVSDLTASLQEKERAIEATNAEIT-------------------------KLRSRVDLKLQ 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 631 EAQSLQQQRDqYLGHLQQYVAAYQQLTSEK----EVLHNQLLLQTQLVDQ-------LQQQEAQGKAVAEMARQELQETQ 699
Cdd:pfam15921 532 ELQHLKNEGD-HLRNVQTECEALKLQMAEKdkviEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFK 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 700 ERLEAATQQNQQLRAQLSLMAhpgegdgLDREEEEDEEEEEEEAVA-VPQPMPSIPEDLESREAMVaffNSAVASAEEEQ 778
Cdd:pfam15921 611 ILKDKKDAKIRELEARVSDLE-------LEKVKLVNAGSERLRAVKdIKQERDQLLNEVKTSRNEL---NSLSEDYEVLK 680
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 779 ARLRGQLKEQRVRCRRLAHLLASAQKEPEAA----APAPGTGGDSV-----CGETHRALQGAMEKLQSRFMELMQ----- 844
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKMQLKSAQSELEQTrntlKSMEGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEEamtna 760
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630580 845 --EKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEeyisrLAQDKEEMkvKLLELQELVLR 918
Cdd:pfam15921 761 nkEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME-----VALDKASL--QFAECQDIIQR 829
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-701 |
3.11e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 3.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 211 IEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGIL------VSEKAELQTALAHTQHAARQKEGESEDLASR 284
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekeVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 285 LQYSRRRVGELERALSAVSTQ-------QKKADRYnKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAg 357
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKvkelkelKEKAEEY-IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 358 mqlNLEELQKKLEMTELLLQQFSSRCEapdANQQLQQAMEERAQLEAHLG--------QVMESVRQLQMERDKYAENLKG 429
Cdd:PRK03918 339 ---RLEELKKKLKELEKRLEELEERHE---LYEEAKAKKEELERLKKRLTgltpekleKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 430 ESAMWRQRMQQMSEQVHTLREEK-ECSMSRVQELETSLAELRNQMAE--PPPPEPPAGPSEVEQQLQAEAEHLRKELEGl 506
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAelKRIEKELKEIEEKERKLRKELRELEKVLKK- 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 507 agqlqaqvqdNEGLSRLNREQeerlleleraaelwgEQAEARRQILETMqnDRTTISRALSQNRELKEQLAELqSGFVKL 586
Cdd:PRK03918 492 ----------ESELIKLKELA---------------EQLKELEEKLKKY--NLEELEKKAEEYEKLKEKLIKL-KGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 587 TNENMEITSALQSEqhvKRELGKKLGELQEKLSELKEtvELKSQEAQSLQQQrDQYLGHLQQYVAAYQQLT---SEKEVL 663
Cdd:PRK03918 544 LKKELEKLEELKKK---LAELEKKLDELEEELAELLK--ELEELGFESVEEL-EERLKELEPFYNEYLELKdaeKELERE 617
|
490 500 510
....*....|....*....|....*....|....*...
gi 1955630580 664 HNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 701
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
307-715 |
3.11e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 307 KKADRYNKELTKERDalrlELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAP 386
Cdd:TIGR04523 138 KNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 387 DA---------------NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREE 451
Cdd:TIGR04523 214 KSlesqiselkkqnnqlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL--------SEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 452 KEcsmSRVQELETSLAELRNQmaeppppeppaGPSEVEQQLQAEAEHLRKELEGLAGQLqaqVQDNEGLSRLNreqeerl 531
Cdd:TIGR04523 286 LE---KQLNQLKSEISDLNNQ-----------KEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLN------- 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 532 leleraaelwgeqaearrqilETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKL 611
Cdd:TIGR04523 342 ---------------------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 612 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMA 691
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420
....*....|....*....|....
gi 1955630580 692 RQELQETQERLEAATQQNQQLRAQ 715
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEE 504
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
205-640 |
3.68e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 205 KQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALR---EQLQVHIQTIGILVSEKAELQTALAHTQH-------AARQK 274
Cdd:TIGR04523 71 NNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSkinSEIKNDKEQKNKLEVELNKLEKQKKENKKnidkfltEIKKK 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 275 EGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELY---KNTQSNEDLKQEKSELEEKLRVL 351
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSnlkKKIQKNKSLESQISELKKQNNQL 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 352 VTEKAGMQLNLEELQKKLEMTELLLQQFSSrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMErdkyAENLKGE- 430
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKD--EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSE----ISDLNNQk 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 431 SAMWrqrMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHlrKELEGLAGQL 510
Cdd:TIGR04523 305 EQDW---NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ--NEIEKLKKEN 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 511 QAQVQDNEGL----SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKL 586
Cdd:TIGR04523 380 QSYKQEIKNLesqiNDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNL 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630580 587 TN----ENMEITSALQSEQHVKRELGKKLGELQEKLSELKetvELKSQEAQSLQQQRD 640
Cdd:TIGR04523 460 DNtresLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK---KLNEEKKELEEKVKD 514
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
442-865 |
5.26e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.73 E-value: 5.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 442 SEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQLQ---AQVQDNE 518
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAE-----SDLEQDYQAASDHLNLVQTALRQQEKierYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 519 GLSRLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNMEITSALQ 598
Cdd:PRK04863 360 LEERLE------------------EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL------DVQQTRAIQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 599 SEQHVKR-ELGKKLGEL----QEKLSELKETVELKSQEAQ----SLQQQRDQYLGHLQQYVAAYQqltsekevlhnqllL 669
Cdd:PRK04863 416 YQQAVQAlERAKQLCGLpdltADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSQFEQAYQ--------------L 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 670 QTQLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSLMAHpgegdglDREEEEDEEEEEEEAVAVPQP 749
Cdd:PRK04863 482 VRKIAGEVSRSEAWDVA------RELLRRLREQRHLAEQLQQLRMRLSELEQ-------RLRQQQRAERLLAEFCKRLGK 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 750 MPSIPEDLES----REAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcgETH 825
Cdd:PRK04863 549 NLDDEDELEQlqeeLEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEF--EDS 626
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955630580 826 RALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSG 865
Cdd:PRK04863 627 QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
189-694 |
5.85e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 5.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 189 RYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQgalrEQLQVHIQTIGILVSEKAELQTALAHTq 268
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHP- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 269 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ----QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSEL 344
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQltseRKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 345 EEKLRVLvtekagmQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQlQMERDKYA 424
Cdd:TIGR00618 594 VRLQDLT-------EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ-ERVREHAL 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 425 ENLKGESAMWRQR------MQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGpSEVEQQLQAEAEH 498
Cdd:TIGR00618 666 SIRVLPKELLASRqlalqkMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLG-SDLAAREDALNQS 744
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 499 LRKELEGLAGQLQAQVQDNEglsrlnreqeerlleleraaelwgeqaearrqiletmqndrttisralsqnRELKEQLAE 578
Cdd:TIGR00618 745 LKELMHQARTVLKARTEAHF---------------------------------------------------NNNEEVTAA 773
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 579 LQSGfvkltnenmeitsalQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTS 658
Cdd:TIGR00618 774 LQTG---------------AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
490 500 510
....*....|....*....|....*....|....*..
gi 1955630580 659 EKEVLHNQL-LLQTQLVDQLQQQEAQGKAVAEMARQE 694
Cdd:TIGR00618 839 EKSATLGEItHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
206-727 |
6.51e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 206 QLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRL 285
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 286 QYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELykntqsnEDLKQEKSELEEKLRVLVTEKAG-MQLNLEE 364
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL-------DDRNMEVQRLEALLKAMKSECQGqMERQMAA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 365 LQKK---LEMTELLLQQFSSrceapdANQQLQQAMEE----RAQLEAHLGQVMESVRQLQmERDKYAENLKGESAMWRQR 437
Cdd:pfam15921 453 IQGKnesLEKVSSLTAQLES------TKEMLRKVVEEltakKMTLESSERTVSDLTASLQ-EKERAIEATNAEITKLRSR 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 438 MQQMSEQVHTLREEK--------ECSMSRVQE------LETSLAELRNQMAEPPPPEPPAGPSEVEQ-QLQAEAEHLRKE 502
Cdd:pfam15921 526 VDLKLQELQHLKNEGdhlrnvqtECEALKLQMaekdkvIEILRQQIENMTQLVGQHGRTAGAMQVEKaQLEKEINDRRLE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 503 LEGLA----------GQLQAQVQD---------NEGLSRLNREQEERLLELERAaelwgEQAEARRQILETMQNDRTTIS 563
Cdd:pfam15921 606 LQEFKilkdkkdakiRELEARVSDlelekvklvNAGSERLRAVKDIKQERDQLL-----NEVKTSRNELNSLSEDYEVLK 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 564 RALSQNRE--------LKEQLAELQSGFVKLTN--ENMEITS--ALQSEQHVKRELGKKLGE---LQEKLSELKETVELK 628
Cdd:pfam15921 681 RNFRNKSEemetttnkLKMQLKSAQSELEQTRNtlKSMEGSDghAMKVAMGMQKQITAKRGQidaLQSKIQFLEEAMTNA 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 629 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQlllqtqlVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 708
Cdd:pfam15921 761 NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ-------ERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
|
570
....*....|....*....
gi 1955630580 709 NQQLRAQLSLMAHPGEGDG 727
Cdd:pfam15921 834 SVRLKLQHTLDVKELQGPG 852
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
486-716 |
1.24e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 486 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSrlnreqeerlleleraaelwgeQAEARRQILETMQNDRTTISRA 565
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD----------------------LSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 566 LSQNRELKEQLAELQSgfvKLTNENMEITSALQSEqhVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 645
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630580 646 LQQYVA-AYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQL 716
Cdd:COG3206 307 LQQEAQrILASLEAELEALQARE---ASLQAQLAQLEARLAELPE-LEAELRRLEREVEVARELYESLLQRL 374
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-453 |
1.72e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 182 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEekkechqkqgaLREQLQVHIQTIGILVSEKAELQ 261
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER-----------LKETIIKNNSEIKDLTNQDSVKE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 262 TALahtqhaarqkegesEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEK 341
Cdd:TIGR04523 454 LII--------------KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 342 SELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERD 421
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
250 260 270
....*....|....*....|....*....|..
gi 1955630580 422 kyaeNLKGESAMWRQRMQQMSEQVHTLREEKE 453
Cdd:TIGR04523 600 ----DLIKEIEEKEKKISSLEKELEKAKKENE 627
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
342-696 |
2.91e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 342 SELEEKLRVLVTEKAgMQLNLEELQKKL---EMTELLLqqfssrceapdanqQLQQAMEERAQLEAHLGQVMESVRQLQM 418
Cdd:TIGR02169 194 DEKRQQLERLRRERE-KAERYQALLKEKreyEGYELLK--------------EKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 419 ERDKYAEnlkgESAMWRQRMQQMSEQVHTLREEKECSM-SRVQELETSLAELRNQMAEPPPPEPPAGpsEVEQQLQAEAE 497
Cdd:TIGR02169 259 EISELEK----RLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAE--ERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 498 HLRKELEGLAGQLQAQVQDNEGLS--------RLNrEQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQN 569
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTeeyaelkeELE-DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 570 RELKEQLAElqsgfvKLTNENMEITSALQseqhvkrelgkKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQY 649
Cdd:TIGR02169 412 QEELQRLSE------ELADLNAAIAGIEA-----------KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1955630580 650 VAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQ 696
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-504 |
3.97e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 182 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQ-------NQEITDQLEEEKKECHQkqgaLREQLQVHIQTIGILV 254
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEltnseseNSEKQRELEEKQNEIEK----LKKENQSYKQEIKNLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 255 SEKAELQTALAHTQHAARQKEGESEDLASRLQysrrrvgELERALSAVSTQQKKADRYNKELTKERDALRLELykntqsn 334
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKE-------LLEKEIERLKETIIKNNSEIKDLTNQDSVKELII------- 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 335 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL-----EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQV 409
Cdd:TIGR04523 457 KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELkskekELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 410 MESVRQLQ-----MERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMaepppPEPPAG 484
Cdd:TIGR04523 537 ESKISDLEdelnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI-----EEKEKK 611
|
330 340
....*....|....*....|.
gi 1955630580 485 PSEVEQQLQ-AEAEHLRKELE 504
Cdd:TIGR04523 612 ISSLEKELEkAKKENEKLSSI 632
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
604-859 |
4.37e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 604 KRELGKKLGELQEKLSELKETvelkSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnQLLLQTQLVDQLQQQEAQ 683
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA----HEALEDAREQIEL-LEPIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 684 GKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREeeedeeeeeeeavavpqpmpsipEDLESReam 763
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-----------------------EQLERE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 764 vaffnsaVASAEEEQARLRGQLKEQRVRCRRL-------AHLLASAQKEPEAAAPApgtggdsvCGETHRALQGAMEKLQ 836
Cdd:COG4913 347 -------IERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEA--------LEEELEALEEALAEAE 411
|
250 260
....*....|....*....|...
gi 1955630580 837 SRFMELMQEKADLKERVEELEHR 859
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERR 434
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
435-869 |
4.80e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 435 RQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQ--LQA 512
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARE-----SDLEQDYQAASDHLNLVQTALRQQekIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 513 QVQDNEGLS-RLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 591
Cdd:COG3096 352 YQEDLEELTeRLE------------------EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DV 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 592 EITSALQSEQHVKR-ELGKKLGEL--------QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSekev 662
Cdd:COG3096 408 QQTRAIQYQQAVQAlEKARALCGLpdltpenaEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK---- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 663 lhnqlllqtqLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSlmahpgEGDGLDREEEEDEEEEEEE 742
Cdd:COG3096 484 ----------IAGEVERSQAWQTA------RELLRRYRSQQALAQRLQQLRAQLA------ELEQRLRQQQNAERLLEEF 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 743 AVAVPQPMPS---IPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAhllasaQKEPE-AAAPAPGTGGD 818
Cdd:COG3096 542 CQRIGQQLDAaeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA------ARAPAwLAAQDALERLR 615
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630580 819 SVCGET---HRALQGAMEKLQSRFMELMQEKADLKERVEELE---HRCIQLSGETDT 869
Cdd:COG3096 616 EQSGEAladSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPGGAEDP 672
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
212-716 |
4.88e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 212 EKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTI-GILVSEKAELQTALAHTQHAARQKEGESEDLASRLqysrR 290
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRARLEALL----A 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 291 RVG-ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEK----AGMQLNLEEL 365
Cdd:COG4913 370 ALGlPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDAL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 366 QKKLEMT--------ELLlqqfssrcEAPDANQQLQQAME-----ERAQL---EAHLGQVMESVRQLQMER----DKYAE 425
Cdd:COG4913 450 AEALGLDeaelpfvgELI--------EVRPEEERWRGAIErvlggFALTLlvpPEHYAAALRWVNRLHLRGrlvyERVRT 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 426 NLKGESAMWRQRmQQMSEQV----HTLREEKECSMSRVQELE--TSLAELRN---------QMAEPPPPEPPAGPSEVEQ 490
Cdd:COG4913 522 GLPDPERPRLDP-DSLAGKLdfkpHPFRAWLEAELGRRFDYVcvDSPEELRRhpraitragQVKGNGTRHEKDDRRRIRS 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 491 QL------QAEAEHLRKELEGLAGQLQAQVQDNEGLSRlnreqeerlleleraaelWGEQAEARRQILETMQN---DRTT 561
Cdd:COG4913 601 RYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEA------------------ELDALQERREALQRLAEyswDEID 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 562 ISRALSQNRELKEQLAELQSGFVKLtnenmeitsalqseqhvkRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQ 641
Cdd:COG4913 663 VASAEREIAELEAELERLDASSDDL------------------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ 724
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630580 642 YLGHLQQYVAAYQQLTSEKEVLHNQLLlqtqlvDQLQQQEAQGKAVAEMARQelqeTQERLEAATQQNQQLRAQL 716
Cdd:COG4913 725 AEEELDELQDRLEAAEDLARLELRALL------EERFAAALGDAVERELREN----LEERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
541-929 |
4.95e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 541 WGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvKRELGKKLGELQEKLSE 620
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE-----KLEKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 621 LKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLhNQLLLQTQLVDQLQQQEAQGKAvaEMARQELQETQE 700
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAEEL--EELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 701 RLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEA--VAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQ 778
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 779 ARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGEThRALQGAMEKLQSRFMELMQEKADLKERVEELEH 858
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEL-LELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 859 RCIQLSGETDTIGEYIALYQ--SQRAVLKERHREKEEYISRLA---------QDKEEMKVKLLELQELVLRLVGDRNEWH 927
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQLEELLgeleelleaLDEEELEEELEELEEELEELEEELEELR 452
|
..
gi 1955630580 928 GR 929
Cdd:COG4717 453 EE 454
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
207-714 |
5.28e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 5.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 207 LNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKaELQTALAHTQhaARQKEGESEDLASRLQ 286
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDK-EKQVSLLLIQ--ITEKENKMKDLTFLLE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 287 YSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKagmQLNLEELQ 366
Cdd:pfam05483 265 ESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK---EAQMEELN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 367 KKLEMTELLLQQF-SSRCEAPDANQQLQQAMEERAqleahlgqvmESVRQLQMERDKYAENLkgesamwrqrmqqmsEQV 445
Cdd:pfam05483 342 KAKAAHSFVVTEFeATTCSLEELLRTEQQRLEKNE----------DQLKIITMELQKKSSEL---------------EEM 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 446 HTLREEKECSMsrvQELETSLAELRNQMAEppppeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnr 525
Cdd:pfam05483 397 TKFKNNKEVEL---EELKKILAEDEKLLDE-------------KKQFEKIAEELKGKEQELIFLLQAREKEIHDL----- 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 526 eqEERLLELERAAELWGEQAEARRQILETMQNDRTTIS----RALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQ 601
Cdd:pfam05483 456 --EIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTahcdKLLLENKELTQEASDMT---LELKKHQEDIINCKKQEE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 602 hvkrELGKKLGELQEKLSELKETVELKSQEaqsLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQ- 680
Cdd:pfam05483 531 ----RMLKQIENLEEKEMNLRDELESVREE---FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQi 603
|
490 500 510
....*....|....*....|....*....|....
gi 1955630580 681 EAQGKAVAEMArqelQETQERLEAATQQNQQLRA 714
Cdd:pfam05483 604 ENKNKNIEELH----QENKALKKKGSAENKQLNA 633
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
286-511 |
5.52e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 286 QYSRRRVGELERALSAVSTQqkkADRYNKELTKERDALR--LELYKNTQSNEDLK---QEKSELEEKLRVLVTEKAGMQL 360
Cdd:COG3206 164 QNLELRREEARKALEFLEEQ---LPELRKELEEAEAALEefRQKNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 361 NLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesamwrqrmQQ 440
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ----------QE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630580 441 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPeppagpsEVE-QQLQAEAEHLRKELEGLAGQLQ 511
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL-------EAElRRLEREVEVARELYESLLQRLE 375
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
208-472 |
9.14e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.59 E-value: 9.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 208 NITIEKLKQQNQEITDQLEEEKKECHQKQGALRE---------QLQVHIQTIGILVSEKAELQ----TALAHTQHAARQK 274
Cdd:PRK10929 101 NMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREisdslsqlpQQQTEARRQLNEIERRLQTLgtpnTPLAQAQLTALQA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 275 EgesedLASRlqysRRRVGELERA-LSAVSTQqkkadrynkELTKerdaLRLELYKN--TQSNEDLKQEKSELEEkLRVL 351
Cdd:PRK10929 181 E-----SAAL----KALVDELELAqLSANNRQ---------ELAR----LRSELAKKrsQQLDAYLQALRNQLNS-QRQR 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 352 VTEKAgmqlnleelqkkLEMTELLLQQFSSRCEAPDA----NQQLQQAMEERAQ-LEAHLGQVMESVRQLQMERDkyAEN 426
Cdd:PRK10929 238 EAERA------------LESTELLAEQSGDLPKSIVAqfkiNRELSQALNQQAQrMDLIASQQRQAASQTLQVRQ--ALN 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1955630580 427 LKGESAMWRQRMQQMSE----QVHTLREekecsMSRVQELETSLAELRNQ 472
Cdd:PRK10929 304 TLREQSQWLGVSNALGEalraQVARLPE-----MPKPQQLDTEMAQLRVQ 348
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
205-906 |
9.37e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 9.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 205 KQLNITIEKLKQQNQEITDQLEEEKKECHQKqgalreqLQVHIQTIGILVSEKAELQTALAHTQHAaRQKEGESEDLASR 284
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHER-------KQVLEKELKHLREALQQTQQSHAYLTQK-REAQEEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 285 LQYSRRRVGELERALSAVSTQQKKADRYNKELtkerdALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEE 364
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAA-----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 365 LQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLgqvmESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQ 444
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT----QHIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 445 VHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 524
Cdd:TIGR00618 413 DTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 525 REQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVK 604
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 605 RELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQqyvaayQQLTSEKEVLHNQLLLQTQlvDQLQQQEAQG 684
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH------ALLRKLQPEQDLQDVRLHL--QQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 685 KAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMV 764
Cdd:TIGR00618 645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 765 AFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcGETHRALQGAMEKLQSRFMELMQ 844
Cdd:TIGR00618 725 NASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLKT 803
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630580 845 EKADLKERVEE----LEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMK 906
Cdd:TIGR00618 804 LEAEIGQEIPSdediLNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
290-723 |
1.02e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 290 RRVGELERALSAVSTQQKKadryNKELTKERDAL---RLELYKNTQSNEDLKQEKSELEEKLRVLVT-----EKAGM-QL 360
Cdd:COG3096 279 ERRELSERALELRRELFGA----RRQLAEEQYRLvemARELEELSARESDLEQDYQAASDHLNLVQTalrqqEKIERyQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 361 NLEELQKKLEMtelllqqfssrceapdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQ 440
Cdd:COG3096 355 DLEELTERLEE----------------QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALD----VQQTRAIQ 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 441 MSEQVHTLREEKECSmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQL---Q 511
Cdd:COG3096 415 YQQAVQALEKARALC--GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSvADAARRQFEkayelVCKIAGEVersQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 512 AQVQDNEGLSRlnreqeerlleleraaelWGEQaEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 591
Cdd:COG3096 493 AWQTARELLRR------------------YRSQ-QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRI------GQ 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 592 EITSALqseqhvkrelgkklgELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQT 671
Cdd:COG3096 548 QLDAAE---------------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALE 612
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630580 672 QLVDQLQQQEAQGKAV----AEMARQELQETQERLEAAtQQNQQLRAQLSLMAHPG 723
Cdd:COG3096 613 RLREQSGEALADSQEVtaamQQLLEREREATVERDELA-ARKQALESQIERLSQPG 667
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
624-711 |
1.30e-04 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 44.50 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 624 TVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVlhNQLL--------------LQTQLVDQLQQQEAQGKAVAE 689
Cdd:NF038305 102 TRRLSTQALQQINQQAGQQETQLQQQLNQLQAQTSPQQL--NQLLkseqkqgqalasgqLPEEQKEQLQQFKSNPQALDK 179
|
90 100
....*....|....*....|..
gi 1955630580 690 MARQELQETQERLEAATQQNQQ 711
Cdd:NF038305 180 FLAQQLTQIRTQAEEAEKQARL 201
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
271-552 |
1.63e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.50 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 271 ARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKNTQSNEDLKQEKSELEEKL 348
Cdd:pfam05557 306 ARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRaiLESYDKELTMSNYSPQLLERIEEA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 349 RVLVTEkagMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQL---QQAMEERAQLEAHLGQVMESVRQLQMERDKYAE 425
Cdd:pfam05557 386 EDMTQK---MQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQAlrqQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 426 nlkgesamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAelrnqmaeppppeppagpSEVEQQLQAEAEHLRKELEG 505
Cdd:pfam05557 463 ---------QKNELEMELERRCLQGDYDPKKTKVLHLSMNPA------------------AEAYQQRKNQLEKLQAEIER 515
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1955630580 506 LAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQIL 552
Cdd:pfam05557 516 LKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRL 562
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
670-919 |
1.76e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 670 QTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgldreeeedeeeeeeeavavpqp 749
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 750 mpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRvrcRRLAHLLASAQKEPEAAAPAPGTGGDSVcgethRALQ 829
Cdd:COG4942 69 -----RRIRALEQELAALEAELAELEKEIAELRAELEAQK---EELAELLRALYRLGRQPPLALLLSPEDF-----LDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 830 GAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKL 909
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
250
....*....|
gi 1955630580 910 LELQELVLRL 919
Cdd:COG4942 216 AELQQEAEEL 225
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
314-630 |
2.12e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 314 KELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqQLQ 393
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEISSELPELREELEKLEKEVKELEELKE------EIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 394 QAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK--GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRN 471
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 472 QMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAE-ARR 549
Cdd:PRK03918 322 EINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEkAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 550 QILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITsalqsEQHVKRELGKKLGELQEKLSELKETVELKS 629
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-----EEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
.
gi 1955630580 630 Q 630
Cdd:PRK03918 477 K 477
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-451 |
2.13e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 270 AARQKEGESEDLASRLQY--SRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLK-QEKSELEE 346
Cdd:COG4913 266 AARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 347 KLRVLVTEKAGMQLNLEELQKKLEMTELLL----QQFSSRCEApdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDK 422
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAE--AAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
170 180
....*....|....*....|....*....
gi 1955630580 423 yaenLKGESAMWRQRMQQMSEQVHTLREE 451
Cdd:COG4913 424 ----LEAEIASLERRKSNIPARLLALRDA 448
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
213-904 |
2.37e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 213 KLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTalahTQHAARQKEGESEDLASRL---QYSR 289
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLES----SREIVKSYENELDPLKNRLkeiEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 290 RRVGELERALSAVSTQQKKADRYNKELT-----------------------------KERDALRLELYKNTQSNEDLKQE 340
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSELElkmekvfqgtdeqlndlyhnhqrtvrekeRELVDCQRELEKLNKERRLLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 341 KSELEeklrvlvTEKAGMQLNLEELQKKLEMTELLLQQFSSRCE------APDANQQLQQA-------MEERAQLEAHL- 406
Cdd:TIGR00606 342 KTELL-------VEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgferGPFSERQIKNFhtlvierQEDEAKTAAQLc 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 407 GQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLR------EEKECSMSRVQELETSLAELRNQMAEPPPPE 480
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKfvikelQQLEGSSDRILELDQELRKAERELSKAEKNS 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 481 PPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNdRT 560
Cdd:TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN-KK 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 561 TISRALSQNRELKEQLAElqsgfvKLTNENMEITSALQSEQHVKRELGKK---LGELQEKLSELKETVELKS------QE 631
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRD------RLAKLNKELASLEQNKNHINNELESKeeqLSSYEDKLFDVCGSQDEESdlerlkEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 632 AQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLeaatqQNQQ 711
Cdd:TIGR00606 648 IEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL-----KKKE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 712 LRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAvAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQA------RLRGQL 785
Cdd:TIGR00606 723 KRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimeRFQMEL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 786 KEQRvrcRRLAHLLASAQkepeaaapapGTGGDSVCGETHRALQGAMEKLQ---SRFMELMQEKADLKERVEELEHRCIQ 862
Cdd:TIGR00606 802 KDVE---RKIAQQAAKLQ----------GSDLDRTVQQVNQEKQEKQHELDtvvSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1955630580 863 LSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEE 904
Cdd:TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
489-890 |
2.85e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 489 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALS- 567
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 568 -----QNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSEL----KETVELKSQEAQSLQQQ 638
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 639 RDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQtQLVDQLQQQEAQGKAVAEMA--------------------------- 691
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgll 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 692 --------RQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLE----- 758
Cdd:COG4717 287 allflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelqle 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 759 -SREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQS 837
Cdd:COG4717 367 eLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1955630580 838 RFMELMQEKADLKERVEELEhrciqlsgETDTIGEYIALYQSQRAVLKERHRE 890
Cdd:COG4717 447 ELEELREELAELEAELEQLE--------EDGELAELLQELEELKAELRELAEE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
543-716 |
3.12e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 543 EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLtnenmeitsALQSEQHVKRELGKKLGELQEKLSELK 622
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 623 ETVELKSQEAQSLQQQRDQY-LGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 701
Cdd:COG4913 316 ARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170
....*....|....*
gi 1955630580 702 LEAATQQNQQLRAQL 716
Cdd:COG4913 396 LEEELEALEEALAEA 410
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
388-713 |
3.43e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 388 ANQQLQQAMEERAQLEAHLGQVmESVRQLQMERDKYAENLKGESAMWRQRMQQMS----EQVHTLREEKECSMSRVQELE 463
Cdd:TIGR00618 154 FAQFLKAKSKEKKELLMNLFPL-DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 464 TSLAELRnqmAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEglsRLNREQEERLLELERAAELWGE 543
Cdd:TIGR00618 233 EALQQTQ---QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE---RINRARKAAPLAAHIKAVTQIE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 544 QAeaRRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTN---ENMEITSALQSEQHVKRELGKKLGELQE--KL 618
Cdd:TIGR00618 307 QQ--AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQHihTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 619 SELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQET 698
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
330
....*....|....*
gi 1955630580 699 QERLEAATQQNQQLR 713
Cdd:TIGR00618 465 AQSLKEREQQLQTKE 479
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
294-513 |
3.49e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 294 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTE 373
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 374 LLLQQFSsrceapdanqQLQQAMEERAQLEAHLGQ--VMESVRQLQMERdKYAENLKGESAMWRQRMQQMSEQVHTLREE 451
Cdd:COG4942 104 EELAELL----------RALYRLGRQPPLALLLSPedFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630580 452 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQ 513
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelaeLQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
182-348 |
3.66e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 182 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQ----------GALREQLQVHIQTIG 251
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRaeleevdkefAETRDELKDYREKLE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 252 ILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNT 331
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
170
....*....|....*..
gi 1955630580 332 QSNEDLKQEKSELEEKL 348
Cdd:TIGR02169 476 EEYDRVEKELSKLQREL 492
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
190-859 |
3.80e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 190 YQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEE---EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAH 266
Cdd:PRK04863 416 YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEateELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAW 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 267 tqHAARQKEGESED---LASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKerdalrlelykNTQSNEDLKQEKSE 343
Cdd:PRK04863 496 --DVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK-----------NLDDEDELEQLQEE 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 344 LEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRC----EAPDANQQLQ----QAMEERAQLEAHLGQVMESVRQ 415
Cdd:PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawlAAQDALARLReqsgEEFEDSQDVTEYMQQLLERERE 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 416 LQMERDKYAEnlkgesamwrqRMQQMSEQVHTLREEKECSMSRVQELE-----TSLAELRNQMAEPPPPEPPAGPSE--- 487
Cdd:PRK04863 643 LTVERDELAA-----------RKQALDEEIERLSQPGGSEDPRLNALAerfggVLLSEIYDDVSLEDAPYFSALYGParh 711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 488 --VEQQLQAEAEHLrKELEGLAGQLQAQVQDNEGL--SRLNREQEERLLELERAAELW-----------GEqaEARRQIL 552
Cdd:PRK04863 712 aiVVPDLSDAAEQL-AGLEDCPEDLYLIEGDPDSFddSVFSVEELEKAVVVKIADRQWrysrfpevplfGR--AAREKRI 788
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 553 ETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVkRELGKKLGELQEKLSELKETVelksqea 632
Cdd:PRK04863 789 EQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAEL-RQLNRRRVELERALADHESQE------- 860
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 633 qslQQQRDQYLgHLQQYVAAYQQLTSEKEVLHNQLL------LQTQLvDQLQQQEA----QGKAVAEMARQ--ELQETQE 700
Cdd:PRK04863 861 ---QQQRSQLE-QAKEGLSALNRLLPRLNLLADETLadrveeIREQL-DEAEEAKRfvqqHGNALAQLEPIvsVLQSDPE 935
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 701 RLEAATQQNQQLRAQLSLMAhpGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVASAEEEQAR 780
Cdd:PRK04863 936 QFEQLKQDYQQAQQTQRDAK--QQAFALTEVVQRRAHFSYEDAA----------EMLAKNSDLNEKLRQRLEQAEQERTR 1003
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955630580 781 LRGQLKEQRVRCRRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKAdlKERVEELEHR 859
Cdd:PRK04863 1004 AREQLRQAQAQLAQYNQVLASLKSSYDAKR------------QMLQELKQELQDLGVPADSGAEERA--RARRDELHAR 1068
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
212-631 |
4.09e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 212 EKLKQQNQEITDQLEEEKKECHQKQGALREQLQVhiqtigilvSEKAELQTALAHTQHAARQKEGE----SEDLASRLQY 287
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK---------AEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEE 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 288 SRRRVGELERALSAvstqQKKADRYNKELTKERDALRL-----------ELYKNTQSNEDLKQEKSELEEKLRV-LVTEK 355
Cdd:PTZ00121 1403 DKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAkkkaeeakkadEAKKKAEEAKKAEEAKKKAEEAKKAdEAKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 356 AGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQL-QMERDKYAENLKGESAMW 434
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkKAEEKKKADELKKAEELK 1558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 435 RQRMQQMSEQVHTLREEKECSMSRVQEL----ETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAE--------------- 495
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAkkaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEelkkaeeekkkveql 1638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 496 ----------AEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 565
Cdd:PTZ00121 1639 kkkeaeekkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955630580 566 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSE------QHVKRELGKKLGEL-QEKLSELKETVELKSQE 631
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeekkkiAHLKKEEEKKAEEIrKEKEAVIEEELDEEDEK 1791
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
219-445 |
4.45e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 219 QEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERA 298
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 299 LSAvstQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEEL-QKKLEMTELLLQ 377
Cdd:COG4942 99 LEA---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELaALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630580 378 QFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQV 445
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
571-717 |
7.24e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 571 ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKR--ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH--L 646
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlsELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvI 265
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630580 647 QQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKA-VAEMARQELQETQERLEAATQQNQQLRAQLS 717
Cdd:COG3206 266 QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqLQQEAQRILASLEAELEALQAREASLQAQLA 337
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
294-368 |
8.45e-04 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.41 E-value: 8.45e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630580 294 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 368
Cdd:COG4026 132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
177-623 |
9.06e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 9.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 177 PASSANLKDLESRYQQL---AVALDSSYVTNKQLNITIEKLKQQNQEITDQLEE-------------------EKKECHQ 234
Cdd:PRK03918 217 PELREELEKLEKEVKELeelKEEIEELEKELESLEGSKRKLEEKIRELEERIEElkkeieeleekvkelkelkEKAEEYI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 235 KQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELE---RALSAVSTQQKKADR 311
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEerhELYEEAKAKKEELER 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 312 YNKELT-KERDALRLELykntqsnEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTElllqqfSSRCEAPDANQ 390
Cdd:PRK03918 377 LKKRLTgLTPEKLEKEL-------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK------KAKGKCPVCGR 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 391 QLQqameeraqlEAHLGQVMEsvrqlqmerdKYAENLKGESAmwrqRMQQMSEQVHTLREEK---ECSMSRVQELeTSLA 467
Cdd:PRK03918 444 ELT---------EEHRKELLE----------EYTAELKRIEK----ELKEIEEKERKLRKELrelEKVLKKESEL-IKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 468 ELRNQMAEPPPPEPPAGPSEVEQQLQaEAEHLRKELEGLAGQLQAQvqdNEGLSRLNREQEERLLELERAAELWGEQAEA 547
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAE-EYEKLKEKLIKLKGEIKSL---KKELEKLEELKKKLAELEKKLDELEEELAEL 575
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955630580 548 RRQILEtmqndrttisRALSQNRELKEQLAELQS---GFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKE 623
Cdd:PRK03918 576 LKELEE----------LGFESVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-642 |
9.07e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 9.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 270 AARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRynkeltkERDALRLELYKNTQSNEDLKQEKSELEEKLR 349
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN-------RLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 350 VLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGqvMESVRQLQMERDKyaenLKG 429
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE--DLHKLEEALNDLEARLS--HSRIPEIQAELSK----LEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 430 ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmaeppppeppagpsevEQQLQAEAEHLRKELEGLAGQ 509
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ----------------IKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 510 L---QAQVQDNEGlsrlnreqeeR----LLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsg 582
Cdd:TIGR02169 870 LeelEAALRDLES----------RlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-- 937
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630580 583 fvKLTNENMEITSALQSEQHVKRELGKKLGELQ-----------------EKLSELKETVELKSQEAQSLQQQRDQY 642
Cdd:TIGR02169 938 --DPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeyeevlKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
253-719 |
9.45e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 9.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 253 LVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKN 330
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlCNLLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 331 TQSNEDLKQEKSELEEKlrvlVTEKAGMQLNLEELQKKLEMTELLLQQfssrceapdanqqlqqameERAQLEAH--LGQ 408
Cdd:pfam05483 163 TCARSAEKTKKYEYERE----ETRQVYMDLNNNIEKMILAFEELRVQA-------------------ENARLEMHfkLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 409 VMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELEtslaelrnqmaeppppEPPAGPSEV 488
Cdd:pfam05483 220 DHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE----------------EKTKLQDEN 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 489 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqEERLLELERAAELWGEQAEARrqiLETMQNDRTTISRALSQ 568
Cdd:pfam05483 284 LKELIEKKDHLTKELEDIKMSLQRSMSTQKAL-------EEDLQIATKTICQLTEEKEAQ---MEELNKAKAAHSFVVTE 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 569 NRELKEQLAELqsgfvkLTNENMEITSALQSEQHVKRELGKKLGELQEkLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 648
Cdd:pfam05483 354 FEATTCSLEEL------LRTEQQRLEKNEDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKKILAEDEKLLDEKKQ 426
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630580 649 YVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLM 719
Cdd:pfam05483 427 FEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKL 497
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
255-406 |
1.19e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 255 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERAL----SAVSTQQKKADRYNKEL-----TKERDALRL 325
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIkrleLEIEEVEARIKKYEEQLgnvrnNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 326 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrcEAPDANQQLQQAMEERAQLEAH 405
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE-----ELAELEAELEELEAEREELAAK 171
|
.
gi 1955630580 406 L 406
Cdd:COG1579 172 I 172
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
585-726 |
1.56e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 42.44 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 585 KLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLghLQQYVAAYQQL-TSEKEVl 663
Cdd:COG1193 508 LLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEIL--EKAREEAEEILrEARKEA- 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955630580 664 hnqlllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGD 726
Cdd:COG1193 585 -------EELIRELREAQAEEEELKE-ARKKLEELKQELEEKLEKPKKKAKPAKPPEELKVGD 639
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
435-648 |
1.66e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 435 RQRMQQMSEQVHTLREEKEcSMSRVQELETSLAELRNQMAEPPPPEPPAGPseveQQLQAEAEHLRKELEGLAGQL-QAQ 513
Cdd:COG4913 241 HEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRRL----ELLEAELEELRAELARLEAELeRLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 514 VQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALsqnRELKEQLAELQSGFVKLTNENMEI 593
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1955630580 594 TSALQSEQHvkrELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 648
Cdd:COG4913 393 LEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
334-524 |
1.82e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 334 NEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKlemtellLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESV 413
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 414 RQLQMERDKYAENLKGESAMWRQ-----RMQQMSEQVHTLREEKECSMSR-------VQELETSLAELRNQMAEPPPPEP 481
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1955630580 482 PAGPSEVeQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 524
Cdd:COG3206 316 ASLEAEL-EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
391-715 |
2.58e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 391 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELR 470
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 471 NQMAEPPPPEPPAGP------------SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGL-SRLNREQEERLLELERA 537
Cdd:pfam07888 115 EEKDALLAQRAAHEArireleediktlTQRVLERETELERMKERAKKAGAQRKEEEAERKQLqAKLQQTEEELRSLSKEF 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 538 AELWGEQAEARRQILE------TMQNDRTTISRALSQNRELKEQLAELQSGF------VKLTNENMEITSAL----QSEQ 601
Cdd:pfam07888 195 QELRNSLAQRDTQVLQlqdtitTLTQKLTTAHRKEAENEALLEELRSLQERLnaserkVEGLGEELSSMAAQrdrtQAEL 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 602 HVKR-ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLtseKEVLHNQLLLQTQLVDQLQQQ 680
Cdd:pfam07888 275 HQARlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRL---EERLQEERMEREKLEVELGRE 351
|
330 340 350
....*....|....*....|....*....|....*
gi 1955630580 681 EAQGKAVAEMARQELQETQERLEAATQQNQQLRAQ 715
Cdd:pfam07888 352 KDCNRVQLSESRRELQELKASLRVAQKEKEQLQAE 386
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
315-726 |
2.66e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 315 ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVT--EKAGMQLNL----EELQKKLEMTELLLQQFSSRCEApdA 388
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLvqtaLRQQEKIERYQADLEELEERLEE--Q 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 389 NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQMSEQVHTLREEKECSMSR---VQELETS 465
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD----VQQTRAIQYQQAVQALERAKQLCGLPdltADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 466 LAELRNQmaeppPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQLQAQVQDNEGLSRLNREQEERLLEleraae 539
Cdd:PRK04863 444 LEEFQAK-----EQEATEELLSLEQKLSvAQAAHSQFEqayqlVRKIAGEVSRSEAWDVARELLRRLREQRHLA------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 540 lwgEQAEARRQILETMQndrttisRALSQNRELKEQLAElqsgFVKLTNENMEITSALQSEQhvkRELGKKLGELQEKLS 619
Cdd:PRK04863 513 ---EQLQQLRMRLSELE-------QRLRQQQRAERLLAE----FCKRLGKNLDDEDELEQLQ---EELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 620 ELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlQTQLVDQLQQQeaqgkavaeMARQELQETQ 699
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFE-DSQDVTEYMQQ---------LLERERELTV 645
|
410 420
....*....|....*....|....*..
gi 1955630580 700 ERLEAATQQnQQLRAQLSLMAHPGEGD 726
Cdd:PRK04863 646 ERDELAARK-QALDEEIERLSQPGGSE 671
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
326-705 |
3.82e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 326 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQlnlEELQKKlemTELLLQQFSSRCEAPDANQQLQQAMEEraqLEAH 405
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAE---TELCAEAEEMRARLAARKQELEEILHE---LESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 406 LGQVMESVRQLQMERDKYAENLKGesamWRQRMQQMSEQVHTLREEKECSMSRVQELE--TSLAELRNQMAEPPPPEPPA 483
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQD----LEEQLDEEEAARQKLQLEKVTTEAKIKKLEedILLLEDQNSKLSKERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 484 GPSEVEQQLqAEAEHLRKELEGLAGQLQAQVQDNEGlsRLNREQEERLLELERAAELWGEQAEARRQILEtmqndrttis 563
Cdd:pfam01576 160 RISEFTSNL-AEEEEKAKSLSKLKNKHEAMISDLEE--RLKKEEKGRQELEKAKRKLEGESTDLQEQIAE---------- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 564 ralsqnreLKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVEL-KSQEAQSLQQQRD-- 640
Cdd:pfam01576 227 --------LQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeRAARNKAEKQRRDlg 298
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630580 641 -------QYLGHLQQYVAAYQQLTS--EKEVLHnqllLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAA 705
Cdd:pfam01576 299 eelealkTELEDTLDTTAAQQELRSkrEQEVTE----LKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQA 368
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
240-641 |
3.83e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 240 REQLQVHIQTIGILVSEKAELQTALAHTQHAArqkegesEDLASRLQYSRRRVGELERALSAVS----------TQQKKA 309
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRL-------VEMARELAELNEAESDLEQDYQAASdhlnlvqtalRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 310 DRYNKELtkerDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTEL----------LLQQF 379
Cdd:PRK04863 351 ERYQADL----EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTraiqyqqavqALERA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 380 SSRCEAPDANqqLQQAMEERAQLEAHLGQVMESVRQLQmERDKYAENLKGESAMWRQRMQQMSEQVhtlreEKECSMSRV 459
Cdd:PRK04863 427 KQLCGLPDLT--ADNAEDWLEEFQAKEQEATEELLSLE-QKLSVAQAAHSQFEQAYQLVRKIAGEV-----SRSEAWDVA 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 460 QELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGlagQLQAQVQDNEGLSRLNREQEERLLELERAAE 539
Cdd:PRK04863 499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK---RLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 540 LWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvkrelgkklgELQEKLS 619
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQ--------------QLLERER 641
|
410 420
....*....|....*....|..
gi 1955630580 620 ELKETVELKSQEAQSLQQQRDQ 641
Cdd:PRK04863 642 ELTVERDELAARKQALDEEIER 663
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
335-716 |
4.09e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 335 EDLKQEKSELEEKLrvlvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 414
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 415 QLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREEKecSMSRVQELETSLAELrnQMAEPPPPEPPAGPSEVEQQLQA 494
Cdd:PRK04863 862 QQRSQLEQAKEGL--------SALNRLLPRLNLLADET--LADRVEEIREQLDEA--EEAKRFVQQHGNALAQLEPIVSV 929
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 495 eaehLRKELEGLAgQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQND--RTTISRALSQNREL 572
Cdd:PRK04863 930 ----LQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEklRQRLEQAEQERTRA 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 573 KEQLAELQSGFvkltNENMEITSALQSEQHVKRELgkkLGELQEKLSELkeTVELKSQEAQSLQQQRDQylghlqqyvaa 652
Cdd:PRK04863 1005 REQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRDE----------- 1064
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630580 653 yqqltsekevLHNQLLLQTQLVDQLQQQEAQGKAvaemarqELQETQERLEAATQQNQQLRAQL 716
Cdd:PRK04863 1065 ----------LHARLSANRSRRNQLEKQLTFCEA-------EMDNLTKKLRKLERDYHEMREQV 1111
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
174-645 |
5.42e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 174 GEGPASSANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVhiqtigil 253
Cdd:TIGR00606 405 DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILEL-------- 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 254 vseKAELQTALAHTQHAarQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKE------LTKERDALRLEL 327
Cdd:TIGR00606 477 ---DQELRKAERELSKA--EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTrtqmemLTKDKMDKDEQI 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 328 YKNTQSNED---------------------LKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSR---- 382
Cdd:TIGR00606 552 RKIKSRHSDeltsllgyfpnkkqledwlhsKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdv 631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 383 --CEAPDAN-----QQLQQAMEERAQLEAHLG-----------------QVMESVRQLQMERDKYAENLKGESAMWRQRM 438
Cdd:TIGR00606 632 cgSQDEESDlerlkEEIEKSSKQRAMLAGATAvysqfitqltdenqsccPVCQRVFQTEAELQEFISDLQSKLRLAPDKL 711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 439 QQMSEQVHTLREEKECSM-------SRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE------- 504
Cdd:TIGR00606 712 KSTESELKKKEKRRDEMLglapgrqSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdv 791
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 505 GLAGQLQAQVQDNEglsrlnreQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNREL----KEQLAELQ 580
Cdd:TIGR00606 792 TIMERFQMELKDVE--------RKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLiqdqQEQIQHLK 863
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630580 581 SGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQ--QQRDQYLGH 645
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEkdQQEKEELIS 930
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
629-875 |
5.81e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 629 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 708
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 709 NQQLRAQLSLMAhpgegdgldREEEEDEEEEEEEAVAVPQPmpsiPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQ 788
Cdd:COG4942 99 LEAQKEELAELL---------RALYRLGRQPPLALLLSPED----FLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 789 RVRCRRLAHLLASAQKEPEAAapapgtggdsvcgetHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETD 868
Cdd:COG4942 166 RAELEAERAELEALLAELEEE---------------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
....*..
gi 1955630580 869 TIGEYIA 875
Cdd:COG4942 231 RLEAEAA 237
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
609-717 |
5.90e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 609 KKLGELQEKLSELKETVELKSQEAQSLQQQrdqyLGHLQQYVAAYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVA 688
Cdd:PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDS----VANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQEL 125
|
90 100
....*....|....*....|....*....
gi 1955630580 689 EMARQELQETQERLEAATQQNQQLRAQLS 717
Cdd:PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLA 154
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
181-711 |
6.09e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 181 ANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEIT---DQLEEEKKECHQKQGALREQLQVHIQTIGILVSEK 257
Cdd:pfam01576 524 AQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAaayDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQ 603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 258 AELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALrlelyknTQSNEDL 337
Cdd:pfam01576 604 KKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDL-------VSSKDDV 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 338 KQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTElllqqfssrceapDANQQLQQAMeeraqleahlgQVMESvrqlQ 417
Cdd:pfam01576 677 GKNVHELERSKRALEQQVEEMKTQLEELEDELQATE-------------DAKLRLEVNM-----------QALKA----Q 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 418 MERDKYAENLKGEsamwrQRMQQMSEQVHtlreekecsmsrvqELETSLAELRNQMAEPPPPEPPAGP--SEVEQQLQAe 495
Cdd:pfam01576 729 FERDLQARDEQGE-----EKRRQLVKQVR--------------ELEAELEDERKQRAQAVAAKKKLELdlKELEAQIDA- 788
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 496 AEHLRKELEGLAGQLQAQVQDnegLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQ 575
Cdd:pfam01576 789 ANKGREEAVKQLKKLQAQMKD---LQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDE 865
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 576 LA-ELQSGFVKltnenmeiTSALQSEqhvKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQ 654
Cdd:pfam01576 866 LAdEIASGASG--------KSALQDE---KRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQ 934
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630580 655 QLTSEKEVLHNQlllQTQLVDQLQQQEAQGKAVAEMARQELQ----ETQERLEAATQQNQQ 711
Cdd:pfam01576 935 KSESARQQLERQ---NKELKAKLQEMEGTVKSKFKSSIAALEakiaQLEEQLEQESRERQA 992
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
211-417 |
6.73e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.33 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 211 IEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQ----TIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQ 286
Cdd:COG5185 372 LSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILAtledTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELN 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 287 YSRRRVGELERalsavSTQQKKADRYNKELTKERDALrlelykntqsNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQ 366
Cdd:COG5185 452 KVMREADEESQ-----SRLEEAYDEINRSVRSKKEDL----------NEELTQIESRVSTLKATLEKLRAKLERQLEGVR 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1955630580 367 KKLEMTELLLQQFSSR--CEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQ 417
Cdd:COG5185 517 SKLDQVAESLKDFMRArgYAHILALENLIPASELIQASNAKTDGQAANLRTAV 569
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
152-502 |
6.75e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 152 ESLRQLSQQLNGLVCESATCVNGEGPASSANLKDLESRYQQLAVALdssyvtnKQLNITIEKLKQQNQEITDQLEE-EKK 230
Cdd:COG4717 163 EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL-------AELEEELEEAQEELEELEEELEQlENE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 231 ECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKAD 310
Cdd:COG4717 236 LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 311 RYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQ 390
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 391 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKyaenlkgesAMWRQRMQQMSEQVHTLREEkecsmsrVQELETSLAELR 470
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDE---------EELEEELEELEEELEELEEE-------LEELREELAELE 459
|
330 340 350
....*....|....*....|....*....|..
gi 1955630580 471 NQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKE 502
Cdd:COG4717 460 AELEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
506-720 |
6.92e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 6.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 506 LAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILET-MQNDRTTISRALSQNRELKEQLAELQSGFV 584
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESrVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 585 KLTNEnmEITSALQSEQHVKR---------ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQ 655
Cdd:pfam07888 112 ELSEE--KDALLAQRAAHEARireleedikTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630580 656 LTSEKEVLHNQLLLQTQLVDQLQQ----------QEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMA 720
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDtittltqkltTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMA 264
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
424-662 |
8.07e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 8.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 424 AENLKGESAMWRQRMQQMSEQVHTLREekecsmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKEL 503
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRK-------ELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 504 EglagQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQndrttisRALSQN---RELKEQLAELQ 580
Cdd:COG3206 236 A----EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSA-------RYTPNHpdvIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 581 SGFVKLTNENM-EITSALQSEQHVKRELGKKLGELQEKLSELKEtvelKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSE 659
Cdd:COG3206 305 AQLQQEAQRILaSLEAELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
...
gi 1955630580 660 KEV 662
Cdd:COG3206 381 EAL 383
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
254-504 |
8.63e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 254 VSEKAELQTALAHTQHAARQkegESEDLASRLQySRRRVGELERALSAVSTQQKK--ADRYNKELTKERDALRLELYKNT 331
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQ---EKEEKAREVE-RRRKLEEAEKARQAEMDRQAAiyAEQERMAMERERELERIRQEERK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 332 QSNEDLKQEKSELE-------EKL---------RVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQA 395
Cdd:pfam17380 360 RELERIRQEEIAMEisrmrelERLqmerqqkneRVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 396 MEERAQLEAHLGQVMESVRQLQME--RDKYAENLKGESAMWR-QRMQQMSEQVHTLREEKECSMSRVQELEtslAELRNQ 472
Cdd:pfam17380 440 LEEERAREMERVRLEEQERQQQVErlRQQEEERKRKKLELEKeKRDRKRAEEQRRKILEKELEERKQAMIE---EERKRK 516
|
250 260 270
....*....|....*....|....*....|..
gi 1955630580 473 MAEPPPPEPPAGPSEVEQQLQAEAEHlRKELE 504
Cdd:pfam17380 517 LLEKEMEERQKAIYEEERRREAEEER-RKQQE 547
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
186-626 |
8.83e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 186 LESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDqleeekkechqkqgaLREQLQVHIQTIGILVSEKAELQTALA 265
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE---------------LEKQLNQLKSEISDLNNQKEQDWNKEL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 266 HTQhaARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYK-------NTQSNEDLK 338
Cdd:TIGR04523 313 KSE--LKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKlkkenqsYKQEIKNLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 339 QEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQM 418
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE--TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 419 ERDKYAENLKGESAMWRQRMQ-----------------QMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEP 481
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKelkskekelkklneekkELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630580 482 PAGPSEVEQQLQAEAEHLRKELEGLAgqlqaqvQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDrtt 561
Cdd:TIGR04523 549 KDDFELKKENLEKEIDEKNKEIEELK-------QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE--- 618
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630580 562 ISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVE 626
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMK 683
|
|
| |
