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Conserved domains on  [gi|1534861485|ref|NP_001354639|]
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mitotic deacetylase-associated SANT domain protein isoform 2 [Homo sapiens]

Protein Classification

ELM2 and SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 10477696)

ELM2 and SANT/Myb-like DNA-binding domain-containing protein similar to REST corepressor 3, may act as a component of a corepressor complex that represses transcription

Gene Ontology:  GO:0003677|GO:0006355|GO:0003700
PubMed:  8882580

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ELM2 pfam01448
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown ...
 723-778 1.45e-13

ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex. The domain is usually found to the N terminus of a myb-like DNA binding domain pfam00249. ELM2 is also found associated with an ARID DNA binding domain pfam01388 in Swiss:O82364. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.


:

Pssm-ID: 460214  Cd Length: 53  Bit Score: 66.10  E-value: 1.45e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1534861485  723 INVGSRFQAEIPLMRDRALAAADPHKAD--LVWQPWEDLessreKQRQVEDLLTAACS 778
Cdd:pfam01448    1 IRVGPRYQAEIPELLPPSEEEDRYEEEDelLVWDPNHNL-----PDRKLDEYLVVARS 53
SANT super family cl21498
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 832-876 1.94e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


The actual alignment was detected with superfamily member cd11661:

Pssm-ID: 473887 [Multi-domain]  Cd Length: 46  Bit Score: 56.85  E-value: 1.94e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1534861485  832 QWKMAERKLFNKGIAIYKKDFFLVQK-LIQTKTVAQCVEFYYTYKK 876
Cdd:cd11661      1 EWSESEAKLFEEGLRKYGKDFHDIRQdFLPWKSVGELVEFYYMWKK 46
 
Name Accession Description Interval E-value
ELM2 pfam01448
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown ...
 723-778 1.45e-13

ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex. The domain is usually found to the N terminus of a myb-like DNA binding domain pfam00249. ELM2 is also found associated with an ARID DNA binding domain pfam01388 in Swiss:O82364. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.


Pssm-ID: 460214  Cd Length: 53  Bit Score: 66.10  E-value: 1.45e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1534861485  723 INVGSRFQAEIPLMRDRALAAADPHKAD--LVWQPWEDLessreKQRQVEDLLTAACS 778
Cdd:pfam01448    1 IRVGPRYQAEIPELLPPSEEEDRYEEEDelLVWDPNHNL-----PDRKLDEYLVVARS 53
SANT_MTA3_like cd11661
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family ...
 832-876 1.94e-10

Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis.


Pssm-ID: 212559 [Multi-domain]  Cd Length: 46  Bit Score: 56.85  E-value: 1.94e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1534861485  832 QWKMAERKLFNKGIAIYKKDFFLVQK-LIQTKTVAQCVEFYYTYKK 876
Cdd:cd11661      1 EWSESEAKLFEEGLRKYGKDFHDIRQdFLPWKSVGELVEFYYMWKK 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 833-875 6.80e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 38.25  E-value: 6.80e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1534861485  833 WKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYK 875
Cdd:pfam00249    4 WTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
837-876 2.78e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 36.82  E-value: 2.78e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1534861485   837 ERKLFNKGIAIY-KKDFFLVQKLIQTKTVAQCVEFYYTYKK 876
Cdd:smart00717    8 EDELLIELVKKYgKNNWEKIAKELPGRTAEQCRERWRNLLK 48
 
Name Accession Description Interval E-value
ELM2 pfam01448
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown ...
 723-778 1.45e-13

ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex. The domain is usually found to the N terminus of a myb-like DNA binding domain pfam00249. ELM2 is also found associated with an ARID DNA binding domain pfam01388 in Swiss:O82364. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.


Pssm-ID: 460214  Cd Length: 53  Bit Score: 66.10  E-value: 1.45e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1534861485  723 INVGSRFQAEIPLMRDRALAAADPHKAD--LVWQPWEDLessreKQRQVEDLLTAACS 778
Cdd:pfam01448    1 IRVGPRYQAEIPELLPPSEEEDRYEEEDelLVWDPNHNL-----PDRKLDEYLVVARS 53
SANT_MTA3_like cd11661
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family ...
 832-876 1.94e-10

Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis.


Pssm-ID: 212559 [Multi-domain]  Cd Length: 46  Bit Score: 56.85  E-value: 1.94e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1534861485  832 QWKMAERKLFNKGIAIYKKDFFLVQK-LIQTKTVAQCVEFYYTYKK 876
Cdd:cd11661      1 EWSESEAKLFEEGLRKYGKDFHDIRQdFLPWKSVGELVEFYYMWKK 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 833-875 6.80e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 38.25  E-value: 6.80e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1534861485  833 WKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYK 875
Cdd:pfam00249    4 WTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 833-875 1.13e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 37.94  E-value: 1.13e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1534861485  833 WKMAERKLFNKGIAIY-KKDFFLVQKLIQTKTVAQCVEFYYTYK 875
Cdd:cd00167      2 WTEEEDELLLEAVKKYgKNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
837-876 2.78e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 36.82  E-value: 2.78e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 1534861485   837 ERKLFNKGIAIY-KKDFFLVQKLIQTKTVAQCVEFYYTYKK 876
Cdd:smart00717    8 EDELLIELVKKYgKNNWEKIAKELPGRTAEQCRERWRNLLK 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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