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Conserved domains on  [gi|1707919338|ref|NP_001358661|]
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U3 small nucleolar ribonucleoprotein protein IMP4 isoform e [Homo sapiens]

Protein Classification

Brix domain-containing protein( domain architecture ID 10657983)

Brix domain-containing protein similar to Homo sapiens ribosome production factor 1 and U3 small nucleolar ribonucleoprotein protein IMP4

CATH:  3.40.50.10480
Gene Ontology:  GO:0019843|GO:0006364
PubMed:  11406393
SCOP:  4004748

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Brix smart00879
The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from ...
1-168 3.40e-56

The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.


:

Pssm-ID: 214879 [Multi-domain]  Cd Length: 180  Bit Score: 176.00  E-value: 3.40e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338    1 MITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH--RGTPVGLIVSHLPFGPTAYFT 78
Cdd:smart00879   1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESssKGRPLNLTIYRLPNGPTLDFK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   79 LCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDD------SHRVITFANQDDYISFRHHVY 149
Cdd:smart00879  81 ILNVSLRKELKGfktGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHkkslpgLRRVVTFSNQDDYIFFRHYRI 160
                          170       180
                   ....*....|....*....|
gi 1707919338  150 K-KTDHRNVELTEVGPRFEL 168
Cdd:smart00879 161 KfGKKKPRVELQEIGPRFTL 180
 
Name Accession Description Interval E-value
Brix smart00879
The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from ...
1-168 3.40e-56

The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.


Pssm-ID: 214879 [Multi-domain]  Cd Length: 180  Bit Score: 176.00  E-value: 3.40e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338    1 MITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH--RGTPVGLIVSHLPFGPTAYFT 78
Cdd:smart00879   1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESssKGRPLNLTIYRLPNGPTLDFK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   79 LCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDD------SHRVITFANQDDYISFRHHVY 149
Cdd:smart00879  81 ILNVSLRKELKGfktGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHkkslpgLRRVVTFSNQDDYIFFRHYRI 160
                          170       180
                   ....*....|....*....|
gi 1707919338  150 K-KTDHRNVELTEVGPRFEL 168
Cdd:smart00879 161 KfGKKKPRVELQEIGPRFTL 180
Brix pfam04427
Brix domain;
5-171 1.25e-25

Brix domain;


Pssm-ID: 461304 [Multi-domain]  Cd Length: 180  Bit Score: 97.65  E-value: 1.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   5 SRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVgalvracKANGVTDLLVVHEHRgtPVGLIVSHL-----PFGPTAYFTL 79
Cdd:pfam04427   1 GRKTSSRLRQLLKDLRSLMKPHTASFLKRNSN-------PLEDVTHLEFLSEKN--DCSLFVFGShskkrPNGPTLEFGV 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338  80 CNVVMRHDIPD-LGTMSEAKPHLITHG--FSSRLGKRVSDILRYLFPVPKDDSH---RVITFA---NQDDYISFRHHVYK 150
Cdd:pfam04427  72 ENYSLMKDLKGtGNCLKGSRPLLVFNGsfFSDPNFKLLKSLFQDLFRVPPINLKgidRVILFSaydNQPDKIWFRHYQIR 151
                         170       180
                  ....*....|....*....|....*...
gi 1707919338 151 KTDHRN-------VELTEVGPRFELKLY 171
Cdd:pfam04427 152 LKEKKKsgtklprVELVEIGPRFDLKLR 179
IMP4 COG2136
rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ...
2-169 1.79e-11

rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ribosomal structure and biogenesis]; rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 441739  Cd Length: 173  Bit Score: 60.01  E-value: 1.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   2 ITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPvGLIVSHLPFG---PTAYFT 78
Cdd:COG2136     2 ITTSRKPSQRTRSFCKDLSRVLPNSVYVNRGKKSLRDLLEEALELGADRLVIIGERKGNP-GRLRFYDVEGnelLSIGLI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338  79 LCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLG-KRVSDILRYLFPVPKD-DSHRVITFANQDD----YISFrhhvYKKT 152
Cdd:COG2136    81 LIGVKLSREIPGNVRIYNASSLVVKASEPVVSGaGELADLLSELLGFEAIeSSYDVIVLIRGDEkgifEIEF----LKSD 156
                         170
                  ....*....|....*..
gi 1707919338 153 DHRnvelteVGPRFELK 169
Cdd:COG2136   157 GGP------VGPLLRIK 167
PRK03972 PRK03972
ribosomal biogenesis protein; Validated
1-103 2.30e-05

ribosomal biogenesis protein; Validated


Pssm-ID: 179689  Cd Length: 208  Bit Score: 43.36  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   1 MITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLI---VSHLPFGPTAYF 77
Cdd:PRK03972    3 LITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTfikVGPEDWGYLGYL 82
                          90       100
                  ....*....|....*....|....*...
gi 1707919338  78 TLCNVVMRHDIP--DLGTMSEAKPHLIT 103
Cdd:PRK03972   83 YLHGIKLQREMGfrNLRPIREDMPLVIT 110
 
Name Accession Description Interval E-value
Brix smart00879
The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from ...
1-168 3.40e-56

The Brix domain is found in a number of eukaryotic proteins; Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.


Pssm-ID: 214879 [Multi-domain]  Cd Length: 180  Bit Score: 176.00  E-value: 3.40e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338    1 MITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH--RGTPVGLIVSHLPFGPTAYFT 78
Cdd:smart00879   1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESssKGRPLNLTIYRLPNGPTLDFK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   79 LCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDD------SHRVITFANQDDYISFRHHVY 149
Cdd:smart00879  81 ILNVSLRKELKGfktGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHkkslpgLRRVVTFSNQDDYIFFRHYRI 160
                          170       180
                   ....*....|....*....|
gi 1707919338  150 K-KTDHRNVELTEVGPRFEL 168
Cdd:smart00879 161 KfGKKKPRVELQEIGPRFTL 180
Brix pfam04427
Brix domain;
5-171 1.25e-25

Brix domain;


Pssm-ID: 461304 [Multi-domain]  Cd Length: 180  Bit Score: 97.65  E-value: 1.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   5 SRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVgalvracKANGVTDLLVVHEHRgtPVGLIVSHL-----PFGPTAYFTL 79
Cdd:pfam04427   1 GRKTSSRLRQLLKDLRSLMKPHTASFLKRNSN-------PLEDVTHLEFLSEKN--DCSLFVFGShskkrPNGPTLEFGV 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338  80 CNVVMRHDIPD-LGTMSEAKPHLITHG--FSSRLGKRVSDILRYLFPVPKDDSH---RVITFA---NQDDYISFRHHVYK 150
Cdd:pfam04427  72 ENYSLMKDLKGtGNCLKGSRPLLVFNGsfFSDPNFKLLKSLFQDLFRVPPINLKgidRVILFSaydNQPDKIWFRHYQIR 151
                         170       180
                  ....*....|....*....|....*...
gi 1707919338 151 KTDHRN-------VELTEVGPRFELKLY 171
Cdd:pfam04427 152 LKEKKKsgtklprVELVEIGPRFDLKLR 179
IMP4 COG2136
rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ...
2-169 1.79e-11

rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain [Translation, ribosomal structure and biogenesis]; rRNA maturation protein Rpf1, contains Brix/IMP4 (anticodon-binding) domain is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 441739  Cd Length: 173  Bit Score: 60.01  E-value: 1.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   2 ITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPvGLIVSHLPFG---PTAYFT 78
Cdd:COG2136     2 ITTSRKPSQRTRSFCKDLSRVLPNSVYVNRGKKSLRDLLEEALELGADRLVIIGERKGNP-GRLRFYDVEGnelLSIGLI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338  79 LCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLG-KRVSDILRYLFPVPKD-DSHRVITFANQDD----YISFrhhvYKKT 152
Cdd:COG2136    81 LIGVKLSREIPGNVRIYNASSLVVKASEPVVSGaGELADLLSELLGFEAIeSSYDVIVLIRGDEkgifEIEF----LKSD 156
                         170
                  ....*....|....*..
gi 1707919338 153 DHRnvelteVGPRFELK 169
Cdd:COG2136   157 GGP------VGPLLRIK 167
PRK03972 PRK03972
ribosomal biogenesis protein; Validated
1-103 2.30e-05

ribosomal biogenesis protein; Validated


Pssm-ID: 179689  Cd Length: 208  Bit Score: 43.36  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   1 MITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLI---VSHLPFGPTAYF 77
Cdd:PRK03972    3 LITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTfikVGPEDWGYLGYL 82
                          90       100
                  ....*....|....*....|....*...
gi 1707919338  78 TLCNVVMRHDIP--DLGTMSEAKPHLIT 103
Cdd:PRK03972   83 YLHGIKLQREMGfrNLRPIREDMPLVIT 110
PRK00933 PRK00933
ribosomal biogenesis protein; Validated
2-61 7.51e-05

ribosomal biogenesis protein; Validated


Pssm-ID: 234867  Cd Length: 165  Bit Score: 41.58  E-value: 7.51e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707919338   2 ITTSRDPSSRLKMFAKELKLVFpGAQRMNRGRHEVGALVRACKANgvtDLLVVHEHRGTP 61
Cdd:PRK00933    3 ITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEAR---YLLIIGEYKGNP 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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