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NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform 2 precursor [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
77-457
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 705.76
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 77 VK N I TLNFGPQHPAAHGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY S LAVE 156
Cdd:PRK06075 4 IR N Y TLNFGPQHPAAHGVLRL IL EL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY C LAVE 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 157 KLL N I RP P P RAQ W IRVLF G E IT R L L N H IMAVT THALDLGAMT P F F W L F E EREK MFEF YE R V S GARMH A AYIRPGGV HQ DL 236
Cdd:PRK06075 84 KLL G I EV P E RAQ Y IRVLF L E LN R I L S H LLWLG THALDLGAMT V F L W G F R EREK LLDL YE A V T GARMH H AYIRPGGV RR DL 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 237 P L GL MD DI YQ F SKN F SL RLD EL E E LLT N NRIW RN R TIDI GVV TA E E AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD QVE F 316
Cdd:PRK06075 164 P D GL LE DI RD F LDY F PK RLD DY E T LLT D NRIW KQ R LVGV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD ELD F 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 317 DVPVG SR GDCYDRYL C RVEEMRQSLRII A QCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ VP P G 394
Cdd:PRK06075 244 DVPVG KN GDCYDRYL V RVEEMRQSLRII E QCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR VP A G 323
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1788951021 395 AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG TRP IV 457
Cdd:PRK06075 324 EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG SLD IV 386
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
77-457
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 705.76
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 77 VK N I TLNFGPQHPAAHGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY S LAVE 156
Cdd:PRK06075 4 IR N Y TLNFGPQHPAAHGVLRL IL EL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY C LAVE 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 157 KLL N I RP P P RAQ W IRVLF G E IT R L L N H IMAVT THALDLGAMT P F F W L F E EREK MFEF YE R V S GARMH A AYIRPGGV HQ DL 236
Cdd:PRK06075 84 KLL G I EV P E RAQ Y IRVLF L E LN R I L S H LLWLG THALDLGAMT V F L W G F R EREK LLDL YE A V T GARMH H AYIRPGGV RR DL 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 237 P L GL MD DI YQ F SKN F SL RLD EL E E LLT N NRIW RN R TIDI GVV TA E E AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD QVE F 316
Cdd:PRK06075 164 P D GL LE DI RD F LDY F PK RLD DY E T LLT D NRIW KQ R LVGV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD ELD F 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 317 DVPVG SR GDCYDRYL C RVEEMRQSLRII A QCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ VP P G 394
Cdd:PRK06075 244 DVPVG KN GDCYDRYL V RVEEMRQSLRII E QCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR VP A G 323
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1788951021 395 AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG TRP IV 457
Cdd:PRK06075 324 EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG SLD IV 386
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
78-453
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 674.09
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 78 KNIT LN F GPQHP AA HGVLRLV M EL S GE M V RKC DPHIG L LHRG T EKL I E YK TY L Q AL PY F DRLDY V S M M C NE Q AY S LAVEK 157
Cdd:COG0649 5 EEMV LN M GPQHP ST HGVLRLV L EL D GE T V VDA DPHIG Y LHRG F EKL A E NR TY T Q II PY T DRLDY L S P M N NE L AY V LAVEK 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT T H ALDLGAMTPF FWL F E EREK MFEFY E R V S GARM HAA Y I R P GGV HQ DLP 237
Cdd:COG0649 85 LL G I EV P E RAQ Y IRV ILA E LN R IAS H LLWLG T Y ALDLGAMTPF LYA F R EREK ILDLF E E V T GARM THN Y F R I GGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 238 L G LMDDIYQ F SKN F SL RLDE L E E LLT N NRI WRN RT IDI GV VT AE E A LNY G FS G VM LR G SG IQW DLRK TQ PY DV YD QVE FD 317
Cdd:COG0649 165 D G FLEKVRE F LDY F PK RLDE Y E D LLT G NRI FKA RT KGV GV LS AE D A IAL G VT G PV LR A SG VDY DLRK DE PY SG YD ELD FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 318 VPVG SR GDCYDRYL C R V EEMRQSLRII A QCL N K M P P G EIKVD D A K VS PP KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:COG0649 245 VPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E G PVMAK D P K IA PP PKE EMKTSME A LIHHFKL V TEG FK VP A G EV Y 324
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1788951021 398 T A I E A P K GE F G V YLVSDG SSR PYR C KI KA P G FA H L AG L DK M S KGHMLADVVAI I G T 453
Cdd:COG0649 325 A A V E S P R GE L G F YLVSDG GTK PYR V KI RS P S FA N L QA L PE M L KGHMLADVVAI L G S 380
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
78-457
0e+00
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 610.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 78 KNIT LN F GPQHP AA HGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I E YK TY L Q AL PY F DRLDY V S MMC NE Q AY S LAVEK 157
Cdd:TIGR01962 1 EFMI LN L GPQHP ST HGVLRL IL EL D GE Y V VRA DPHIG Y LHRGTEKL A E NR TY Q Q YI PY T DRLDY L S PFS NE L AY C LAVEK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT THALDLGAMTPF FWL F E EREK MFEFY E RVS GARMH A AY I R P GGV HQ DLP 237
Cdd:TIGR01962 81 LL G I EV P R RAQ V IRV MLS E LN R ISS H LLFIG THALDLGAMTPF LYA F R EREK ILDLF E AIT GARMH S AY F R I GGV AL DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 238 LGLMDD I YQ F SKN F SL RL DEL E E LL TN NRIW RN RT IDI GVV T A EE AL NY G FS G V MLRGSGI Q WD L RK TQ PY DV YD QVE FD 317
Cdd:TIGR01962 161 ENWLEE I RE F LEQ F PK RL RDY E T LL NE NRIW KQ RT QGV GVV S A KD AL DW G LT G P MLRGSGI D WD I RK SE PY EG YD EYD FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 318 VPVG SR GDCYDRYL C RV E EMR Q S LR II A QCL N KMPPG E IK V D DA K VS PP KRAE M K TSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:TIGR01962 241 VPVG GN GDCYDRYL L RV L EMR E S IK II E QCL E KMPPG P IK A D NP K LA PP PKER M L TSME A LIHHFKL V TEG FR VP A G EV Y 320
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 398 TA IE A PKGE F G V Y LV SDG SSR PYR C KI K AP G FAHL AG L DK M SK GH M LAD VV AI I G TRPI V 457
Cdd:TIGR01962 321 VP IE S PKGE L G F Y II SDG GTK PYR L KI R AP S FAHL QA L EA M CV GH Y LAD LI AI L G SIDP V 380
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-453
3.56e-175
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 491.13
E-value: 3.56e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 194 LGAMTPF FWL F E EREK MFEFY ER VS GARM HAA Y I RPGGV HQ DLP L G LMDD I YQ F SKN F SL RLDE L E E LLT N NRI WRN RT I 273
Cdd:pfam00346 1 LGAMTPF LYA F R EREK ILDLF ER IT GARM THS Y F RPGGV AR DLP E G FLEK I RE F LDY F PK RLDE Y E D LLT R NRI FKD RT K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 274 DI GV VT AE E AL NY G FS G V MLR G SG IQ WDLRK TQ PY DV YD QVE FDVPVG SR GDCYDRYL C R V EEMRQSLRII A QCL N K M P P 353
Cdd:pfam00346 81 GV GV LS AE D AL AL G VT G P MLR A SG VP WDLRK DE PY SG YD ELD FDVPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 354 G EIKV DD A K VSP P KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T A I EAPKGE F G V YLVSDG SSR PYR C KI K AP G FA H L A 433
Cdd:pfam00346 161 G PVMA DD P K IAL P PKE EMKTSME A LIHHFKL V TEG FR VP A G EV Y V A V EAPKGE L G F YLVSDG GTK PYR V KI R AP S FA N L Q 240
250 260
....*....|....*....|
gi 1788951021 434 G L DK M S KGHMLADVVAIIG T 453
Cdd:pfam00346 241 A L PE M C KGHMLADVVAIIG S 260
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
77-457
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 705.76
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 77 VK N I TLNFGPQHPAAHGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY S LAVE 156
Cdd:PRK06075 4 IR N Y TLNFGPQHPAAHGVLRL IL EL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY C LAVE 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 157 KLL N I RP P P RAQ W IRVLF G E IT R L L N H IMAVT THALDLGAMT P F F W L F E EREK MFEF YE R V S GARMH A AYIRPGGV HQ DL 236
Cdd:PRK06075 84 KLL G I EV P E RAQ Y IRVLF L E LN R I L S H LLWLG THALDLGAMT V F L W G F R EREK LLDL YE A V T GARMH H AYIRPGGV RR DL 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 237 P L GL MD DI YQ F SKN F SL RLD EL E E LLT N NRIW RN R TIDI GVV TA E E AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD QVE F 316
Cdd:PRK06075 164 P D GL LE DI RD F LDY F PK RLD DY E T LLT D NRIW KQ R LVGV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD ELD F 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 317 DVPVG SR GDCYDRYL C RVEEMRQSLRII A QCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ VP P G 394
Cdd:PRK06075 244 DVPVG KN GDCYDRYL V RVEEMRQSLRII E QCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR VP A G 323
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1788951021 395 AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG TRP IV 457
Cdd:PRK06075 324 EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG SLD IV 386
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
78-453
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 674.09
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 78 KNIT LN F GPQHP AA HGVLRLV M EL S GE M V RKC DPHIG L LHRG T EKL I E YK TY L Q AL PY F DRLDY V S M M C NE Q AY S LAVEK 157
Cdd:COG0649 5 EEMV LN M GPQHP ST HGVLRLV L EL D GE T V VDA DPHIG Y LHRG F EKL A E NR TY T Q II PY T DRLDY L S P M N NE L AY V LAVEK 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT T H ALDLGAMTPF FWL F E EREK MFEFY E R V S GARM HAA Y I R P GGV HQ DLP 237
Cdd:COG0649 85 LL G I EV P E RAQ Y IRV ILA E LN R IAS H LLWLG T Y ALDLGAMTPF LYA F R EREK ILDLF E E V T GARM THN Y F R I GGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 238 L G LMDDIYQ F SKN F SL RLDE L E E LLT N NRI WRN RT IDI GV VT AE E A LNY G FS G VM LR G SG IQW DLRK TQ PY DV YD QVE FD 317
Cdd:COG0649 165 D G FLEKVRE F LDY F PK RLDE Y E D LLT G NRI FKA RT KGV GV LS AE D A IAL G VT G PV LR A SG VDY DLRK DE PY SG YD ELD FD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 318 VPVG SR GDCYDRYL C R V EEMRQSLRII A QCL N K M P P G EIKVD D A K VS PP KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:COG0649 245 VPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E G PVMAK D P K IA PP PKE EMKTSME A LIHHFKL V TEG FK VP A G EV Y 324
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1788951021 398 T A I E A P K GE F G V YLVSDG SSR PYR C KI KA P G FA H L AG L DK M S KGHMLADVVAI I G T 453
Cdd:COG0649 325 A A V E S P R GE L G F YLVSDG GTK PYR V KI RS P S FA N L QA L PE M L KGHMLADVVAI L G S 380
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
78-457
0e+00
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 610.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 78 KNIT LN F GPQHP AA HGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I E YK TY L Q AL PY F DRLDY V S MMC NE Q AY S LAVEK 157
Cdd:TIGR01962 1 EFMI LN L GPQHP ST HGVLRL IL EL D GE Y V VRA DPHIG Y LHRGTEKL A E NR TY Q Q YI PY T DRLDY L S PFS NE L AY C LAVEK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT THALDLGAMTPF FWL F E EREK MFEFY E RVS GARMH A AY I R P GGV HQ DLP 237
Cdd:TIGR01962 81 LL G I EV P R RAQ V IRV MLS E LN R ISS H LLFIG THALDLGAMTPF LYA F R EREK ILDLF E AIT GARMH S AY F R I GGV AL DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 238 LGLMDD I YQ F SKN F SL RL DEL E E LL TN NRIW RN RT IDI GVV T A EE AL NY G FS G V MLRGSGI Q WD L RK TQ PY DV YD QVE FD 317
Cdd:TIGR01962 161 ENWLEE I RE F LEQ F PK RL RDY E T LL NE NRIW KQ RT QGV GVV S A KD AL DW G LT G P MLRGSGI D WD I RK SE PY EG YD EYD FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 318 VPVG SR GDCYDRYL C RV E EMR Q S LR II A QCL N KMPPG E IK V D DA K VS PP KRAE M K TSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:TIGR01962 241 VPVG GN GDCYDRYL L RV L EMR E S IK II E QCL E KMPPG P IK A D NP K LA PP PKER M L TSME A LIHHFKL V TEG FR VP A G EV Y 320
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 398 TA IE A PKGE F G V Y LV SDG SSR PYR C KI K AP G FAHL AG L DK M SK GH M LAD VV AI I G TRPI V 457
Cdd:TIGR01962 321 VP IE S PKGE L G F Y II SDG GTK PYR L KI R AP S FAHL QA L EA M CV GH Y LAD LI AI L G SIDP V 380
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-453
3.56e-175
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 491.13
E-value: 3.56e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 194 LGAMTPF FWL F E EREK MFEFY ER VS GARM HAA Y I RPGGV HQ DLP L G LMDD I YQ F SKN F SL RLDE L E E LLT N NRI WRN RT I 273
Cdd:pfam00346 1 LGAMTPF LYA F R EREK ILDLF ER IT GARM THS Y F RPGGV AR DLP E G FLEK I RE F LDY F PK RLDE Y E D LLT R NRI FKD RT K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 274 DI GV VT AE E AL NY G FS G V MLR G SG IQ WDLRK TQ PY DV YD QVE FDVPVG SR GDCYDRYL C R V EEMRQSLRII A QCL N K M P P 353
Cdd:pfam00346 81 GV GV LS AE D AL AL G VT G P MLR A SG VP WDLRK DE PY SG YD ELD FDVPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 354 G EIKV DD A K VSP P KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T A I EAPKGE F G V YLVSDG SSR PYR C KI K AP G FA H L A 433
Cdd:pfam00346 161 G PVMA DD P K IAL P PKE EMKTSME A LIHHFKL V TEG FR VP A G EV Y V A V EAPKGE L G F YLVSDG GTK PYR V KI R AP S FA N L Q 240
250 260
....*....|....*....|
gi 1788951021 434 G L DK M S KGHMLADVVAIIG T 453
Cdd:pfam00346 241 A L PE M C KGHMLADVVAIIG S 260
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
80-457
1.11e-143
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 415.26
E-value: 1.11e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 80 IT LN F GPQHP AA HGV L RLV MELS GE MVRKCD P H IG L LHRGTEKL I E YKT Y L Q AL PY F DR L DY V S M M C N EQA Y SL AVE KLL 159
Cdd:PRK12322 7 ML LN V GPQHP ST HGV F RLV LKID GE IIVEAT P V IG Y LHRGTEKL A E SLQ Y T Q II PY T DR M DY L S A M T N NYV Y CH AVE TMM 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 160 NIRP P P RA QWI RV LFG E IT R LLN H IMAVT T HA LD L GA MT PF FWL F E ERE KMFEFYERVS GAR MHAA Y I R P GGV HQ D L P L G 239
Cdd:PRK12322 87 GLEV P E RA EYL RV IAM E LG R IAS H LVWWG T YL LD I GA VS PF LYA F R ERE MIINLLNELC GAR LTFN Y M R I GGV KW D A P D G 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 240 LMDDIYQ F SKNFSLR L DELEE L L T N N R I WR NR TIDI G VVT AEEA LN Y GF SGV M LR GS G IQ WDLRK TQ PY DV YD QVE FD V P 319
Cdd:PRK12322 167 WIEKVKE F VPYMREQ L AGYHD L V T G N E I FL NR VKGV G IYS AEEA IS Y SL SGV N LR CT G VN WDLRK DE PY SI YD RFD FD I P 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 320 VGS R GDC Y DRY L CR VE E MR QSL R II A Q CLNKM P P - G EIK vdd AKV sp PK raemktsmes L I hhfklytegy QV P P G AT Y T 398
Cdd:PRK12322 247 VGS V GDC W DRY V CR MQ E IE QSL K II E Q AVEQF P K e G PVL --- AKV -- PK ---------- I I ---------- KA P K G EA Y V 301
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1788951021 399 A IE A P K GE F G V Y LV SDG SSR PYR C K IKA P G F AH L AG L D K MS KG HML A DVV AI I G TRP IV 457
Cdd:PRK12322 302 R IE S P R GE I G C Y IA SDG KKK PYR L K FRR P S F YN L QI L P K LL KG ENI A NLI AI L G SID IV 360
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
62-453
4.15e-134
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 404.93
E-value: 4.15e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 62 K P P P WN D V -- DPPKD T IV knit LN F GPQHP AA HG VL R L V ME L S GE MVRKC D PH IG LL HRG T EK LI E YKTYL Q AL PY F DR L 139
Cdd:PRK13292 389 Q P L P AG D F fd RVDEE T LI ---- LN L GPQHP GT HG II R F V LK L D GE EIVDM D SD IG YH HRG A EK IG E RQHWN Q FI PY T DR I 464
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 140 DY VSMMC N EQ AY SLA VE K L LN I RP P P RA QW IRV LFG E IT R LL NH IMAVT T H A L D L GAMTP F F WL F EE REK M F EFY E RVS G 219
Cdd:PRK13292 465 DY LAGVQ N NL AY VNS VE T L CG I EV P D RA IY IRV MLS E LF R IA NH LVWLG T F A A D V GAMTP V F YT F TD REK I F DIV E MIT G 544
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 220 A RMH A A YI R P GGV HQ DLP L G LMDDIYQ F SKN F SL RL D E L E E LLT N N R I WRN R TIDI GV V T AE EA LNY G F SG VM LR GS G IQ 299
Cdd:PRK13292 545 G RMH P A WF R I GGV AE DLP E G WKEAVEA F LRW F PG RL K E Y E D LLT G N P I FKA R LKGV GV I T RD EA VEW G I SG PN LR AC G LA 624
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 300 WDLRK TQ PY DV YD QVE F D VP VGSR GDCY D RYL C R V EEMRQSLRI IA Q CLNK MP P G EIKV DD AKVSP P KRAEMKTSM ESLI 379
Cdd:PRK13292 625 WDLRK KM PY GG YD RFD F E VP TAEG GDCY A RYL V R M EEMRQSLRI VR Q AAAG MP G G RWIS DD YRYVL P QKRDTLKDI ESLI 704
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1788951021 380 HHF KLY T E G YQV P P G AT Y T AIEAPKGE F G VYL VSDG SSRP YR CK I KA P G F A H LAG L DKM S K G HML AD VV AIIG T 453
Cdd:PRK13292 705 HHF VNV T R G PAP P K G EC Y A AIEAPKGE N G YFV VSDG LNIA YR MR I RT P S F P H IQA L PLL S R G WLV AD FL AIIG S 778
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
82-453
2.10e-132
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 393.90
E-value: 2.10e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 82 LN F GP Q HP A AHG VL R L V ME L S GE MVRK C D P H IG LL HRG T EK LI E YKTYLQAL PY F DR L DY VSMMC NE QA Y S LAVEKL LN I 161
Cdd:PRK11742 194 LN L GP N HP S AHG AF R I V LQ L D GE EIVD C V P D IG YH HRG A EK MG E RQSWHSYI PY T DR I DY LGGCM NE MP Y V LAVEKL AG I 273
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 162 RP P P R AQW IRV LFG E IT R LLN H IMAVT T HAL D L GAMTP F F WL F EE R E K MFEFY E RVS G A RMH A A YI R P GGV HQ DLP L G LM 241
Cdd:PRK11742 274 TV P D R VNV IRV MLS E LF R INS H LLYIG T FIQ D V GAMTP V F FA F TD R Q K IYDVI E AIT G F RMH P A WF R I GGV AH DLP R G WD 353
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 242 DDIYQ F SKNFSL RLDE L E ELLTN N R I WRN RT IDIGVVT A E EAL NY G FS G VM LR GS GI QW D L RK TQ PY DV Y DQVE F D VPVG 321
Cdd:PRK11742 354 RLLRE F LDWMPK RLDE Y E KAALR N S I LKG RT QGVAAYN A K EAL EW G VT G AG LR AT GI DF D V RK AR PY SG Y ENFD F E VPVG 433
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 322 SR GDCYDR YLCR VEEMRQSLRII A QCL NK MP P G EI K V D DAKVS PP KRAEMKTSM E S LI H HF KLYTE G YQV P PGATYTA IE 401
Cdd:PRK11742 434 GN GDCYDR VMVK VEEMRQSLRII E QCL DN MP E G PF K A D HPLTT PP PKERTLQHI E T LI T HF LQVSW G PVM P ANESFQM IE 513
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1788951021 402 A P KG EFGV YL V SDGS SRP YR CK I KA P G FAHL AGLDKMSK G HMLA D VVAII G T 453
Cdd:PRK11742 514 A T KG INSY YL T SDGS TMS YR TR I RT P S FAHL QQIPSVIR G SLVS D LIVYL G S 565
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
82-457
1.06e-108
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 327.08
E-value: 1.06e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 82 LNFGP Q HP AA HGVLRL VME L S GE M V RK C D P H IG L LHRG T EK LI E YK T YLQAL PY FD R L DY VSM M C NE QAYSL A V EKL L NI 161
Cdd:PRK07415 13 LNFGP H HP SM HGVLRL IVT L D GE D V VD C E P V IG Y LHRG M EK IA E NR T NVMYV PY VS R W DY AAG M F NE AITVN A P EKL A NI 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 162 RP P P RA QW IRV LFG E IT R LL NH IMAVTTHAL D L GA M TPFF WL F E ERE KMFEFY E RVS G A R M - HAA Y I R P GGV HQ DLP L G L 240
Cdd:PRK07415 93 PV P K RA SY IRV IML E LN R IA NH LLWLGPFLA D V GA Q TPFF YI F R ERE MIYDLW E AAT G Q R L i NNN Y F R I GGV AA DLP Y G W 172
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 241 MDDIYQ F SKN F SLRL DE L E E L L TNN R I W R N R TIDI G VVTA EEA L N Y G F SG V MLR G SG IQ WDLRK TQP Y DV YD QVEF DV PV 320
Cdd:PRK07415 173 LEKCLD F CDY F GPKI DE Y E K L I TNN P I F R R R IEGL G TISR EEA I N W G L SG P MLR A SG VK WDLRK VDH Y EC YD DFDW DV AW 252
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 321 GSR GDC YD RY LC R V EEMR Q S LR II A Q CLNKM P P G EIKVDD AK vspp KR AE M K T S - MESLIHHF -- K LYTEGYQV P P G AT Y 397
Cdd:PRK07415 253 ETE GDC LA RY RV R I EEMR E S VK II R Q ACKGI P G G PYENLE AK ---- RM AE G K K S e WNGFDYQY va K KVAPTFKI P N G EL Y 328
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 398 TAI E AP KGE F G VYLVSDGSSR P Y R C KI K A PG F AH L AG L DKMS KG HML AD VV AI I G TRPIV 457
Cdd:PRK07415 329 VRL E SG KGE L G IFIQGNNDVT P W R W KI R A AD F NN L QI L PHLL KG AKV AD IM AI L G SIDVI 388
ndhH
CHL00017 NADH dehydrogenase subunit 7
80-457
3.81e-100
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 305.08
E-value: 3.81e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 80 ITL N F GP Q HP AA HGVLRL VME L S GE M V RK C D P HI G L LHRG T EK LI E YK T YL Q A LPY FD R L DY VSM M CN E QAYSL A V E K L L 159
Cdd:CHL00017 11 MIV N M GP H HP SM HGVLRL IVT L D GE D V ID C E P IL G Y LHRG M EK IA E NR T II Q Y LPY VT R W DY LAT M FT E AITVN A P E Q L G 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 160 NI RP P P RA QW IRV LFG E IT R LLN H IMAVTTHAL D L GA M TPFF WL F E ERE KMFEFY E RVS G A RM HAA Y I R P GGV HQ DLP L G 239
Cdd:CHL00017 91 NI QV P K RA SY IRV IML E LS R IAS H LLWLGPFMA D I GA Q TPFF YI F R ERE LIYDLF E AAT G M RM MHN Y F R I GGV AA DLP Y G 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 240 LM D DIYQ F SKN F SLRLD E LEE L L T N N R I WRN R TIDI G VVTA EEA L N Y G F SG V MLR G SGIQWDLRK TQP Y DV YD QVEFD V P 319
Cdd:CHL00017 171 WI D KCLD F CDY F LTGVA E YQK L I T R N P I FLE R VEGV G IIGG EEA I N W G L SG P MLR A SGIQWDLRK VDH Y EC YD EFDWE V Q 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 320 VGSR GD CYD RYL C R VE EM RQ S LR II A Q C L NKM P P G EIKVDD A KVSPPKRAEMKTSM E sli HH F -- K LYTEGYQVPPGAT Y 397
Cdd:CHL00017 251 WQKE GD SLA RYL V R IG EM TE S IK II Q Q A L EGI P G G PYENLE A RRFDREKDSEWNDF E --- YR F is K KPSPTFELSKQEL Y 327
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 398 TAI EAPKGE F G VY L VS D G S SR P Y R C KI KA PGF AH L AG L DKMS K GHM LAD VVA I I G TRP I V 457
Cdd:CHL00017 328 VRV EAPKGE L G IF L IG D D S VF P W R W KI RP PGF IN L QI L PQLV K RMK LAD IMT I L G SID I I 387
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
12-453
3.13e-88
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 277.24
E-value: 3.13e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 12 GV A AQVLRPGAGVRLPIQPSRGV R QWQ PD VEW aqqf GGAVMYPSKETAHWK PPP WNDVD P PKDTIVKNIT - LNF GP Q H PA 90
Cdd:COG3261 58 AA A RRERARERLGGEEGGGPPRR R LLL PD GWP ---- PLPPPPLRPPPPPRG PPP PPPEE P EMKVEGEGVH e IPV GP V H AG 133
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 91 AH -- G VL R LVM E ls GE MVRKCDPHI G LL HRG T EKL I E YKT Y L QAL PYFD R ldy VSMM C --- NEQ AY SL AVEK LLN I RP PP 165
Cdd:COG3261 134 LI ep G HF R FSV E -- GE RILDLEIRL G YV HRG I EKL A E GRD Y E QAL YLAE R --- ICGI C sva HAL AY CQ AVEK AAG I EV PP 208
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 166 RAQ WI RV LFG E IT R LLN H IMAVTTH A L D L G AM T P F FWLFEE RE KMFEFY E RVS G A R MHAAYIR PGGV HQ DL PLGLMDD I Y 245
Cdd:COG3261 209 RAQ YL RV ILL E LE R IHS H LLDLGAL A N D V G FE T L F MQCWRL RE RVLDLN E ALT G N R VLRGINV PGGV RR DL DPEQLKA I L 288
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 246 QFSKNFSLRLD EL EE L LT N NRIWRN R TIDI GV VTA E E A LNY G FS G VML R G SG IQW D L R KTQ PY DV YD QVE F D V PVGSR GD 325
Cdd:COG3261 289 ERLDELEEEVK EL VD L FL N DPSVLD R LVGT GV LSK E D A RDL G AV G PVA R A SG VDR D V R RDH PY AA YD ELD F K V VTETE GD 368
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788951021 326 C Y D R Y L C R V EE MRQ SL RI I A Q C L N K M P P G E I K V ddakvs P PKRA emktsmeslihhfklytegyq V P P G ATYTAI EAP K G 405
Cdd:COG3261 369 V Y A R A L V R L EE IFE SL DL I R Q A L E K L P E G P I R V ------ P VPGL --------------------- P P D G EGLGRV EAP R G 421
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1788951021 406 E FGV Y LVS DG SS R PY R C KI KA P G FA HLAG L DKMSK G HML AD VVA I IGT 453
Cdd:COG3261 422 E LVH Y VRT DG DG R LE R V KI RT P S FA NWPA L ELALR G NIV AD FPL I NKS 469
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
