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Conserved domains on  [gi|1825597415|ref|NP_001366206|]
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A-kinase anchor protein 9 isoform 4 [Homo sapiens]

Protein Classification

Smc and PACT_coil_coil domain-containing protein( domain architecture ID 13601532)

protein containing domains DUF5401, Smc, SMC_prok_B, and PACT_coil_coil

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PACT_coil_coil pfam10495
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ...
1919-2000 2.36e-25

Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.


:

Pssm-ID: 431316  Cd Length: 77  Bit Score: 101.12  E-value: 2.36e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1919 KYLRAESFRKALIYQKKYLLLLLGGFQECEDATLALLARMGGQPAFTdleviTNRPKGFTRFRSAVRVSIAISRMKFLVR 1998
Cdd:pfam10495    1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPRDD-----RPRRKPRRKLKSAALAVIAIARMKRLAR 75

                   ..
gi 1825597415 1999 RW 2000
Cdd:pfam10495   76 EW 77
Smc super family cl34174
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
231-584 1.68e-16

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 86.31  E-value: 1.68e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  231 RDDLQKQVKALEIDVEEQVSRFIELEQEknteLMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQqlk 310
Cdd:COG1196    662 SLAQKRELKELEEELAELEAQLEKLEEE----LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ--- 734
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  311 vvprFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKH 390
Cdd:COG1196    735 ----LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  391 FGAVEAKPELSLEVQLQAErdaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFK 470
Cdd:COG1196    811 ALERELESLEQRRERLEQE---IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  471 DDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLM 550
Cdd:COG1196    888 ELEEELRELESELAELKEEIE-----KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
                          330       340       350
                   ....*....|....*....|....*....|....
gi 1825597415  551 SdqecVKRNREEEIEQLNEVIEKLQQELANIGQK 584
Cdd:COG1196    963 P----VNLRAIEEYEEVEERYEELKSQREDLEEA 992
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
347-968 1.56e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 79.72  E-value: 1.56e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELE--------QALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEK 418
Cdd:TIGR02168  174 RKETERKLERTRENLDRLEDILNELErqlkslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  419 EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE---STTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVL- 494
Cdd:TIGR02168  254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLd 333
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  495 -----FGKFAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEI 564
Cdd:TIGR02168  334 elaeeLAELEEKLEELKEELESLEAELEELEAELeelesRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARL 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  565 EQLNEVIEKLQQELANIGQKTSMNA-HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 643
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  644 ELFSLKRERESVEKI----------QSIPENSVNVAIDHLS---KDKPELEVVLTE--DALKSLENQTYFKSFE-----E 703
Cdd:TIGR02168  490 RLDSLERLQENLEGFsegvkallknQSGLSGILGVLSELISvdeGYEAAIEAALGGrlQAVVVENLNAAKKAIAflkqnE 569
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  704 NGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEkVAAALVSQIQLEAvqEYA 783
Cdd:TIGR02168  570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRP--GYR 646
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  784 KFCQDNQTISSE------PERTNIQNLNQLRE-DELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEK 856
Cdd:TIGR02168  647 IVTLDGDLVRPGgvitggSAKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  857 KLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTtelfhsNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLV 936
Cdd:TIGR02168  727 QISALRKDLARLEAEVEQLEERIAQLSKELTELE------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
                          650       660       670
                   ....*....|....*....|....*....|..
gi 1825597415  937 KETNMTSLQKDLSQVRDHLAEAKEKLSILEKE 968
Cdd:TIGR02168  801 LREALDELRAELTLLNEEAANLRERLESLERR 832
Smc super family cl34174
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1279-1629 1.53e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 60.11  E-value: 1.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1279 LEQRIQEQGVEYQAAMECLQKAdrRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSM 1358
Cdd:COG1196    686 LEEELKSLKNELRSLEDLLEEL--RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1359 KDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWA 1438
Cdd:COG1196    764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1439 LEKEKAKLGRSEERdKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLE 1518
Cdd:COG1196    844 LDELEEELEELEKE-LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1519 SEKVRIREMSSTLDRERELhaqlqssdgtgqsrpplpsedllkELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKD 1598
Cdd:COG1196    923 RLEVELPELEEELEEEYED------------------------TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEER 978
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1825597415 1599 RQVHRKTLQTEQEANTEGQKKMHELQSKVED 1629
Cdd:COG1196    979 YEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
DUF5401 super family cl38662
Family of unknown function (DUF5401); This is a family of unknown function found in ...
62-372 5.89e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


The actual alignment was detected with superfamily member pfam17380:

Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 5.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   62 KRNGHILKLISKISLPTPPYSLEH--AKVTQTELMRE-----------SFRQKQEATESLKcQEELRERLHEESRA---R 125
Cdd:pfam17380  237 ERRKESFNLAEDVTTMTPEYTVRYngQTMTENEFLNQllhivqhqkavSERQQQEKFEKME-QERLRQEKEEKAREverR 315
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  126 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQEllcasNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV 205
Cdd:pfam17380  316 RKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIAMEISRMRELERLQMERQQK 390
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  206 EQQLLQETEKLMKEKL----------EVQCQAEKVRDDL----QKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQ 271
Cdd:pfam17380  391 NERVRQELEAARKVKIleeerqrkiqQQKVEMEQIRAEQeearQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE 470
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  272 ALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-----LEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS 346
Cdd:pfam17380  471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEErkqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEE 550
                          330       340
                   ....*....|....*....|....*.
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELE 372
Cdd:pfam17380  551 RRRIQEQMRKATEERSRLEAMERERE 576
 
Name Accession Description Interval E-value
PACT_coil_coil pfam10495
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ...
1919-2000 2.36e-25

Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.


Pssm-ID: 431316  Cd Length: 77  Bit Score: 101.12  E-value: 2.36e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1919 KYLRAESFRKALIYQKKYLLLLLGGFQECEDATLALLARMGGQPAFTdleviTNRPKGFTRFRSAVRVSIAISRMKFLVR 1998
Cdd:pfam10495    1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPRDD-----RPRRKPRRKLKSAALAVIAIARMKRLAR 75

                   ..
gi 1825597415 1999 RW 2000
Cdd:pfam10495   76 EW 77
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
231-584 1.68e-16

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 86.31  E-value: 1.68e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  231 RDDLQKQVKALEIDVEEQVSRFIELEQEknteLMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQqlk 310
Cdd:COG1196    662 SLAQKRELKELEEELAELEAQLEKLEEE----LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ--- 734
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  311 vvprFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKH 390
Cdd:COG1196    735 ----LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  391 FGAVEAKPELSLEVQLQAErdaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFK 470
Cdd:COG1196    811 ALERELESLEQRRERLEQE---IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  471 DDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLM 550
Cdd:COG1196    888 ELEEELRELESELAELKEEIE-----KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
                          330       340       350
                   ....*....|....*....|....*....|....
gi 1825597415  551 SdqecVKRNREEEIEQLNEVIEKLQQELANIGQK 584
Cdd:COG1196    963 P----VNLRAIEEYEEVEERYEELKSQREDLEEA 992
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
244-647 5.89e-16

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 84.34  E-value: 5.89e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  244 DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAidreherdvfqqeiQKLEQQLKVVPRFQPISEHQT 323
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS--------------RQISALRKDLARLEAEVEQLE 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  324 REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAkpeLSLE 403
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLR 823
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  404 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 480
Cdd:TIGR02168  824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  481 KESDamstqdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQ---QQLKITTDNKVIEEKNELIRDLETQIEClmsdqecvK 557
Cdd:TIGR02168  904 RELE---------------SKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEAL--------E 960
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  558 RNREEEIEQLNEVIEKLQQELANIGQkTSMNA----HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKE 633
Cdd:TIGR02168  961 NKIEDDEEEARRRLKRLENKIKELGP-VNLAAieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE---ARERFKD 1036
                          410
                   ....*....|....
gi 1825597415  634 TNFKMNQLTQELFS 647
Cdd:TIGR02168 1037 TFDQVNENFQRVFP 1050
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
347-968 1.56e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 79.72  E-value: 1.56e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELE--------QALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEK 418
Cdd:TIGR02168  174 RKETERKLERTRENLDRLEDILNELErqlkslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  419 EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE---STTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVL- 494
Cdd:TIGR02168  254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLd 333
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  495 -----FGKFAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEI 564
Cdd:TIGR02168  334 elaeeLAELEEKLEELKEELESLEAELEELEAELeelesRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARL 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  565 EQLNEVIEKLQQELANIGQKTSMNA-HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 643
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  644 ELFSLKRERESVEKI----------QSIPENSVNVAIDHLS---KDKPELEVVLTE--DALKSLENQTYFKSFE-----E 703
Cdd:TIGR02168  490 RLDSLERLQENLEGFsegvkallknQSGLSGILGVLSELISvdeGYEAAIEAALGGrlQAVVVENLNAAKKAIAflkqnE 569
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  704 NGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEkVAAALVSQIQLEAvqEYA 783
Cdd:TIGR02168  570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRP--GYR 646
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  784 KFCQDNQTISSE------PERTNIQNLNQLRE-DELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEK 856
Cdd:TIGR02168  647 IVTLDGDLVRPGgvitggSAKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  857 KLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTtelfhsNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLV 936
Cdd:TIGR02168  727 QISALRKDLARLEAEVEQLEERIAQLSKELTELE------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
                          650       660       670
                   ....*....|....*....|....*....|..
gi 1825597415  937 KETNMTSLQKDLSQVRDHLAEAKEKLSILEKE 968
Cdd:TIGR02168  801 LREALDELRAELTLLNEEAANLRERLESLERR 832
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
410-970 1.57e-09

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 63.24  E-value: 1.57e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  410 RDAIDRKEKEITNLEEQL----EQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 485
Cdd:COG0419    177 KEVIKEAKAKIEELEGQLsellEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKA 256
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  486 MSTQDQHvLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNK-VIEEKNELIRDLETQIECLMSDQecvkRNREEEI 564
Cdd:COG0419    257 RLLEIES-LELEALKIREEELRELERLLEELEEKIERLEELEREIeELEEELEGLRALLEELEELLEKL----KSLEERL 331
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  565 EQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 644
Cdd:COG0419    332 EKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  645 LFSLKRERESVEKIQSI---PENSVNVAIDHLSKDKPELEVVLTEDALKSLENQ----TYFKSFEENGKGSIINLETRLL 717
Cdd:COG0419    412 LEELEKELEELERELEEleeEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQelpeEHEKELLELYELELEELEEELS 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  718 QLESTVSAKDL--ELTQCYKQIKDMQ-EQGQFETEMLQKKIVNLQKIVEEKV-AAALVSQIQLEAVQEYAKFCQDN-QTI 792
Cdd:COG0419    492 REKEEAELREEieELEKELRELEEELiELLELEEALKEELEEKLEKLENLLEeLEELKEKLQLQQLKEELRQLEDRlQEL 571
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  793 SSEPERTNIQNLNQLREDELGSDISaltlRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQ 872
Cdd:COG0419    572 KELLEELRLLRTRKEELEELRERLK----ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAE 647
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  873 REKEKKRSPQDVE--VLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQ 950
Cdd:COG0419    648 LEELLQAALEELEekVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAE 727
                          570       580
                   ....*....|....*....|
gi 1825597415  951 VRDHLAEAKEKLSILEKEDE 970
Cdd:COG0419    728 LEELKKELEKLEKALELLEE 747
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1279-1629 1.53e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 60.11  E-value: 1.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1279 LEQRIQEQGVEYQAAMECLQKAdrRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSM 1358
Cdd:COG1196    686 LEEELKSLKNELRSLEDLLEEL--RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1359 KDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWA 1438
Cdd:COG1196    764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1439 LEKEKAKLGRSEERdKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLE 1518
Cdd:COG1196    844 LDELEEELEELEKE-LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1519 SEKVRIREMSSTLDRERELhaqlqssdgtgqsrpplpsedllkELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKD 1598
Cdd:COG1196    923 RLEVELPELEEELEEEYED------------------------TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEER 978
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1825597415 1599 RQVHRKTLQTEQEANTEGQKKMHELQSKVED 1629
Cdd:COG1196    979 YEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
PTZ00121 PTZ00121
MAEBL; Provisional
1289-1661 2.65e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 59.38  E-value: 2.65e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1289 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVElssMKDRATELQEQ 1368
Cdd:PTZ00121  1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---EAKKADEAKKK 1452
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1369 lSSEKMVVAELKSELAQTKLELETTLKAQH-KHLKELEAFRLEVKDKTDEVHllndTLASEQKKSRELQWALEKEKAKLG 1447
Cdd:PTZ00121  1453 -AEEAKKAEEAKKKAEEAKKADEAKKKAEEaKKADEAKKKAEEAKKKADEAK----KAAEAKKKADEAKKAEEAKKADEA 1527
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1448 RSEErDKEELEDLKFSLESQKQRNLQLNLLLEQQkqllnESQQKIESQRmlydaqlSEEQGRNLEL---QVLLESEKVRI 1524
Cdd:PTZ00121  1528 KKAE-EAKKADEAKKAEEKKKADELKKAEELKKA-----EEKKKAEEAK-------KAEEDKNMALrkaEEAKKAEEARI 1594
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1525 REMSSTLDRERELHA-QLQSSDGTGQSRPPLPSEDLLK----ELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDR 1599
Cdd:PTZ00121  1595 EEVMKLYEEEKKMKAeEAKKAEEAKIKAEELKKAEEEKkkveQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 1600 QVHRKTLQTEQEAN--TEGQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:PTZ00121  1675 KKAEEAKKAEEDEKkaAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
228-849 2.75e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 59.31  E-value: 2.75e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  228 EKVRDDLQKQVKALEI--DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEqaidREHERDVFQQEIQKL 305
Cdd:PRK03918   144 DESREKVVRQILGLDDyeNAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE----VLREINEISSELPEL 219
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  306 EQQLKVVprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKV 385
Cdd:PRK03918   220 REELEKL-------EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----------EKV 282
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  386 EDRKHFGAvEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFRE---ELENKNEEVQqlhmQLEIQKKESTTRLQEL 462
Cdd:PRK03918   283 KELKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLE----ELKKKLKELEKRLEEL 357
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  463 EQENKLFKDDMEKLGLAIKESDAMSTQDqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKittdnKVIEEKNEL---I 539
Cdd:PRK03918   358 EERHELYEEAKAKKEELERLKKRLTGLT-----------PEKLEKELEELEKAKEEIEEEIS-----KITARIGELkkeI 421
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  540 RDLETQIECLMSDQ-ECVKRNREEEIEQLNEVIEKLQQELANIgQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVE 618
Cdd:PRK03918   422 KELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAELKRI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  619 TAnEEMTFMKNVLKETNF-KMNQLTQELFSLKRERESVEKIQSIPENSVNvAIDHLSKDKPELEVVL--TEDALKSLENQ 695
Cdd:PRK03918   501 LA-EQLKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLdeLEEELAELLKE 578
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  696 tyfksFEENGKGSIINLETRLLQLEStVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIveEKVAAALVSQIQ 775
Cdd:PRK03918   579 -----LEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAET--EKRLEELRKELE 650
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415  776 lEAVQEYakfcqdnqtisSEPERTNIQNlnqlREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEK 849
Cdd:PRK03918   651 -ELEKKY-----------SEEEYEELRE----EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1324-1655 4.66e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.53  E-value: 4.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1324 KREQESEKpSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLssekmvvAELKSELAQTKLELETTLKAQHKHLKE 1403
Cdd:TIGR02168  218 LKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAEL-------QELEEKLEELRLEVSELEEEIEELQKE 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1404 LEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEE---RDKEELEDLKFSLESQKQRNLQLNLLLEQ 1480
Cdd:TIGR02168  290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaELEEKLEELKEELESLEAELEELEAELEE 369
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1481 QKQLLNESQQKIESQRMLYdAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQlqssdgtgqsrppLPSEDLL 1560
Cdd:TIGR02168  370 LESRLEELEEQLETLRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK-------------KLEEAEL 435
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1561 KELQKQLEEKHSRIVELLNETEkykldslQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSkVEDLQRQLEEKRQQ 1640
Cdd:TIGR02168  436 KELQAELEELEEELEELQEELE-------RLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG 507
                          330
                   ....*....|....*
gi 1825597415 1641 VYKLDLEGQRLQGIM 1655
Cdd:TIGR02168  508 VKALLKNQSGLSGIL 522
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
193-978 8.19e-08

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 57.67  E-value: 8.19e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  193 RQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQA 272
Cdd:pfam02463  205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  273 LEKQLEKMRKFLdeqaidreherdvfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKcSELLLSKEQLQR 352
Cdd:pfam02463  285 EEELKLLAKEEE--------------ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEI-EELEKELKELEI 349
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  353 DIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRkhfgaveakpELSLEVQLQAERDAIDRKEKEITNLEEQLEQFRE 432
Cdd:pfam02463  350 KREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER----------LSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  433 ELENKNEEvqqlhmqlEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDamstqdqhvlfgkfaqIIQEKEVEIDQL 512
Cdd:pfam02463  420 LLKEEKKE--------ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD----------------ELELKKSEDLLK 475
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  513 NEQVTKLQQQLKittdnkvieekneliRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSL 592
Cdd:pfam02463  476 ETQLVKLQEQLE---------------LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  593 SEEADSlkhqlDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDH 672
Cdd:pfam02463  541 YKVAIS-----TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  673 LSKDKPELEVVLTEDALKSLENQTYFKSFEenGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQ 752
Cdd:pfam02463  616 DEDDKRAKVVEGILKDTELTKLKESAKAKE--SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEE 693
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  753 KKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELGSDISALTLRISELESQVVE 832
Cdd:pfam02463  694 ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  833 MHTSLILEKEQVEIAEKNVLEKE-KKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRA 911
Cdd:pfam02463  774 KELAEEREKTEKLKVEEEKEEKLkAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415  912 ESVATK----AELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEKEDETEVQESKK 978
Cdd:pfam02463  854 EELERLeeeiTKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
347-695 5.03e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 55.11  E-value: 5.03e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfqkVEDRKHFGAVEAKPELSLEVQ-LQAERDAI----DRKEKEIT 421
Cdd:pfam15921   73 KEHIERVLEEYSHQVKDLQRRLNESNE-----------LHEKQKFYLRQSVIDLQTKLQeMQMERDAMadirRRESQSQE 141
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  422 NLEEQLEQFREELEN----KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGK 497
Cdd:pfam15921  142 DLRNQLQNTVHELEAakclKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTIHFRSLGSA 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  498 FAQIIQEKEVEIDQLNEQVTKLQQQ---LKITTDNKVieekNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKL 574
Cdd:pfam15921  222 ISKILRELDTEISYLKGRIFPVEDQleaLKSESQNKI----ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  575 QQELANIGQ----KTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL-- 648
Cdd:pfam15921  298 QSQLEIIQEqarnQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLdd 377
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415  649 ----------KRERE-SVEKIQSI----PENSVNVAIDHLSK--DKPELEVVLTEDALKSLENQ 695
Cdd:pfam15921  378 qlqklladlhKREKElSLEKEQNKrlwdRDTGNSITIDHLRRelDDRNMEVQRLEALLKAMKSE 441
PTZ00121 PTZ00121
MAEBL; Provisional
83-800 3.14e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.84  E-value: 3.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   83 LEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQL--AVELSKAEGVIDGYADEKTLFERQIQEktdiI 160
Cdd:PTZ00121  1142 AEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAARKAEEERKAEE----A 1217
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  161 DRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQvKA 240
Cdd:PTZ00121  1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE----EARMAHFARRQAAIKAEEARKADELKKAEEKK-KA 1292
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  241 LEIDVEEQVSRFIELEQ--EKNTELMDLRQQNQALEKQLEKMRKfldeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPI 318
Cdd:PTZ00121  1293 DEAKKAEEKKKADEAKKkaEEAKKADEAKKKAEEAKKKADAAKK----KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  319 SEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDiQERNEEIEKLEFRVRELEQAlLVSADTFQKVEDRKHfGAVEAKP 398
Cdd:PTZ00121  1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED-KKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKK-KAEEAKK 1445
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  399 ELSLEVQLQAERDAIDRKEK-----EITNLEEQLEQFR--EELENKNEEVQQLHMQLEiQKKESTTRLQELEQ-ENKLFK 470
Cdd:PTZ00121  1446 ADEAKKKAEEAKKAEEAKKKaeeakKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAK-KAAEAKKKADEAKKaEEAKKA 1524
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  471 DDMEKLGLAIKESDAMSTQDQHvlfgKFAQIIQEKEVeidQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLE-TQIECL 549
Cdd:PTZ00121  1525 DEAKKAEEAKKADEAKKAEEKK----KADELKKAEEL---KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEeARIEEV 1597
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  550 MSDQECVKRNREEEI----------EQLN--EVIEKLQQELANIGQKTSMNAHSLSEEADSL---------KHQLDVVIA 608
Cdd:PTZ00121  1598 MKLYEEEKKMKAEEAkkaeeakikaEELKkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENkikaaeeakKAEEDKKKA 1677
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  609 EKLALEQQVETANEEMTFMKnvlKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDA 688
Cdd:PTZ00121  1678 EEAKKAEEDEKKAAEALKKE---AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  689 LKsleNQTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKK--IVNLQK--IVEE 764
Cdd:PTZ00121  1755 EK---KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlVINDSKemEDSA 1831
                          730       740       750
                   ....*....|....*....|....*....|....*.
gi 1825597415  765 KVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTN 800
Cdd:PTZ00121  1832 IKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
62-372 5.89e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 5.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   62 KRNGHILKLISKISLPTPPYSLEH--AKVTQTELMRE-----------SFRQKQEATESLKcQEELRERLHEESRA---R 125
Cdd:pfam17380  237 ERRKESFNLAEDVTTMTPEYTVRYngQTMTENEFLNQllhivqhqkavSERQQQEKFEKME-QERLRQEKEEKAREverR 315
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  126 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQEllcasNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV 205
Cdd:pfam17380  316 RKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIAMEISRMRELERLQMERQQK 390
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  206 EQQLLQETEKLMKEKL----------EVQCQAEKVRDDL----QKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQ 271
Cdd:pfam17380  391 NERVRQELEAARKVKIleeerqrkiqQQKVEMEQIRAEQeearQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE 470
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  272 ALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-----LEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS 346
Cdd:pfam17380  471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEErkqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEE 550
                          330       340
                   ....*....|....*....|....*.
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELE 372
Cdd:pfam17380  551 RRRIQEQMRKATEERSRLEAMERERE 576
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1428-1660 9.40e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.43  E-value: 9.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1428 EQKKSRELQWALEKEKAKLGRSEERDKE-----ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQ 1502
Cdd:pfam17380  305 KEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQ 384
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1503 LSEEQGRNLELQVLLESEKVRIREMsstlDRERELHAQLQSSDGTGQSRpplpsEDLLKELQKQLEEKHSRivellnETE 1582
Cdd:pfam17380  385 MERQQKNERVRQELEAARKVKILEE----ERQRKIQQQKVEMEQIRAEQ-----EEARQREVRRLEEERAR------EME 449
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1583 KYKLDSLQTRQQMEKDRQ--VHRKTLQTEQEANTEGQKKMHELQSKVedLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQK 1660
Cdd:pfam17380  450 RVRLEEQERQQQVERLRQqeEERKRKKLELEKEKRDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKLLEKEMEERQK 527
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
348-577 1.35e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 43.08  E-value: 1.35e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   348 EQLQRDIQERNEEIEKLEFRVRELEQALLV---SADTFQKVEDRKHFGAVEAKPELslevqlQAERDAIDRKEKEITNLE 424
Cdd:smart00787   73 KELKKYISEGRDLFKEIEEETLINNPPLFKeyfSASPDVKLLMDKQFQLVKTFARL------EAKKMWYEWRMKLLEGLK 146
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   425 EQLEQFREELENKNEEVQQ-------LHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKEsdAMSTQDQHvlfgk 497
Cdd:smart00787  147 EGLDENLEGLKEDYKLLMKelellnsIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE--KLKKLLQE----- 219
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   498 faqiIQEKEVEIDQLNEQVTKLQQqlkittdnkVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQE 577
Cdd:smart00787  220 ----IMIKVKKLEELEEELQELES---------KIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
 
Name Accession Description Interval E-value
PACT_coil_coil pfam10495
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ...
1919-2000 2.36e-25

Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.


Pssm-ID: 431316  Cd Length: 77  Bit Score: 101.12  E-value: 2.36e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1919 KYLRAESFRKALIYQKKYLLLLLGGFQECEDATLALLARMGGQPAFTdleviTNRPKGFTRFRSAVRVSIAISRMKFLVR 1998
Cdd:pfam10495    1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPRDD-----RPRRKPRRKLKSAALAVIAIARMKRLAR 75

                   ..
gi 1825597415 1999 RW 2000
Cdd:pfam10495   76 EW 77
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
231-584 1.68e-16

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 86.31  E-value: 1.68e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  231 RDDLQKQVKALEIDVEEQVSRFIELEQEknteLMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQqlk 310
Cdd:COG1196    662 SLAQKRELKELEEELAELEAQLEKLEEE----LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ--- 734
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  311 vvprFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKH 390
Cdd:COG1196    735 ----LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  391 FGAVEAKPELSLEVQLQAErdaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFK 470
Cdd:COG1196    811 ALERELESLEQRRERLEQE---IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  471 DDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLM 550
Cdd:COG1196    888 ELEEELRELESELAELKEEIE-----KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
                          330       340       350
                   ....*....|....*....|....*....|....
gi 1825597415  551 SdqecVKRNREEEIEQLNEVIEKLQQELANIGQK 584
Cdd:COG1196    963 P----VNLRAIEEYEEVEERYEELKSQREDLEEA 992
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
244-647 5.89e-16

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 84.34  E-value: 5.89e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  244 DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAidreherdvfqqeiQKLEQQLKVVPRFQPISEHQT 323
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS--------------RQISALRKDLARLEAEVEQLE 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  324 REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAkpeLSLE 403
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLR 823
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  404 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 480
Cdd:TIGR02168  824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  481 KESDamstqdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQ---QQLKITTDNKVIEEKNELIRDLETQIEClmsdqecvK 557
Cdd:TIGR02168  904 RELE---------------SKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEAL--------E 960
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  558 RNREEEIEQLNEVIEKLQQELANIGQkTSMNA----HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKE 633
Cdd:TIGR02168  961 NKIEDDEEEARRRLKRLENKIKELGP-VNLAAieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE---ARERFKD 1036
                          410
                   ....*....|....
gi 1825597415  634 TNFKMNQLTQELFS 647
Cdd:TIGR02168 1037 TFDQVNENFQRVFP 1050
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
239-979 4.50e-15

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 81.68  E-value: 4.50e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  239 KALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVprfqpi 318
Cdd:COG1196    171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL------ 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  319 sehqTREVEQLANHLkektdkcselllskEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgaveakp 398
Cdd:COG1196    245 ----EEELSRLEEEL--------------EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIE-------- 298
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  399 elSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEK 475
Cdd:COG1196    299 --ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELeerETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  476 LGLAIKE--SDAMSTQDQHvlfgkfAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIEC 548
Cdd:COG1196    377 LFEALREelAELEAELAEI------RNELEELKREIESLEERLERLSERLedlkeELKELEAELEELQTELEELNEELEE 450
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  549 LMSDQECVKRNR---EEEIEQLNEVIEKLQQELANIGQKTSMnahsLSEEADSLKHQLDVVIAEKLALEQQVETANEEMT 625
Cdd:COG1196    451 LEEQLEELRDRLkelERELAELQEELQRLEKELSSLEARLDR----LEAEQRASQGVRAVLEALESGLPGVYGPVAELIK 526
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  626 F---------------MKNVLKETN---------FKMNQLTQELF-SLKRERESVEKIQSIPENSVNVAIDHLSKDKPel 680
Cdd:COG1196    527 VkekyetaleaalgnrLQAVVVENEevakkaiefLKENKAGRATFlPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPK-- 604
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  681 evvlTEDALKSLENQTYFKSFEENGKG--SIINLETRLLQLESTV-----------------SAKDLELTQCYKQIKDMQ 741
Cdd:COG1196    605 ----YEPAVRFVLGDTLVVDDLEQARRlaRKLRIKYRIVTLDGDLvepsgsitggsrnkrssLAQKRELKELEEELAELE 680
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  742 EQgQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKfcQDNQTISSEPERTNIQNLNQLRE-DELGSDISALT 820
Cdd:COG1196    681 AQ-LEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK--RELAALEEELEQLQSRLEELEEElEELEEELEELQ 757
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  821 LRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELfHSNEEs 900
Cdd:COG1196    758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI-EELEE- 835
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1825597415  901 gffnELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEKEDETEVQESKKA 979
Cdd:COG1196    836 ----EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
347-968 1.56e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 79.72  E-value: 1.56e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELE--------QALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEK 418
Cdd:TIGR02168  174 RKETERKLERTRENLDRLEDILNELErqlkslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  419 EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE---STTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVL- 494
Cdd:TIGR02168  254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLd 333
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  495 -----FGKFAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEI 564
Cdd:TIGR02168  334 elaeeLAELEEKLEELKEELESLEAELEELEAELeelesRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARL 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  565 EQLNEVIEKLQQELANIGQKTSMNA-HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 643
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  644 ELFSLKRERESVEKI----------QSIPENSVNVAIDHLS---KDKPELEVVLTE--DALKSLENQTYFKSFE-----E 703
Cdd:TIGR02168  490 RLDSLERLQENLEGFsegvkallknQSGLSGILGVLSELISvdeGYEAAIEAALGGrlQAVVVENLNAAKKAIAflkqnE 569
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  704 NGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEkVAAALVSQIQLEAvqEYA 783
Cdd:TIGR02168  570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRP--GYR 646
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  784 KFCQDNQTISSE------PERTNIQNLNQLRE-DELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEK 856
Cdd:TIGR02168  647 IVTLDGDLVRPGgvitggSAKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  857 KLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTtelfhsNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLV 936
Cdd:TIGR02168  727 QISALRKDLARLEAEVEQLEERIAQLSKELTELE------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
                          650       660       670
                   ....*....|....*....|....*....|..
gi 1825597415  937 KETNMTSLQKDLSQVRDHLAEAKEKLSILEKE 968
Cdd:TIGR02168  801 LREALDELRAELTLLNEEAANLRERLESLERR 832
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
125-829 8.53e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 77.40  E-value: 8.53e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  125 REQLAVELSKAEGVIDGYADEKTLFERQIQEKTDI-------IDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEA 197
Cdd:TIGR02168  241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEvseleeeIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  198 MKAEAGPVEQQL--LQETEKLMKEKLEvqcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE---KNTELMDLRQQNQA 272
Cdd:TIGR02168  321 LEAQLEELESKLdeLAEELAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIAS 397
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  273 LEKQLEKMRKFLdeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQR 352
Cdd:TIGR02168  398 LNNEIERLEARL--ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  353 DIQERNEEIEKLEFRVRELEqALLVSADTFQK-----VEDRKHFGA----------VEAKPELSLEVQLQAERDAIDRKE 417
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLE-RLQENLEGFSEgvkalLKNQSGLSGilgvlselisVDEGYEAAIEAALGGRLQAVVVEN 554
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  418 KEITNLE-EQLEQ-------FREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL--GLAIKESDAMS 487
Cdd:TIGR02168  555 LNAAKKAiAFLKQnelgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNA 634
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  488 TQDQHVL-----------------------FGKFAQIIQEKEVEIDQLNEQVTKLQQQLKIT--------TDNKVIEEKN 536
Cdd:TIGR02168  635 LELAKKLrpgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELekalaelrKELEELEEEL 714
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  537 ELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADslkhQLDVVIAEKLALEQQ 616
Cdd:TIGR02168  715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE----ELAEAEAEIEELEAQ 790
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  617 VETANEEMTF-------MKNVLKETNFKMNQLTQELFSLKRERESVEK-IQSIPEN---------SVNVAIDHLSKDKPE 679
Cdd:TIGR02168  791 IEQLKEELKAlrealdeLRAELTLLNEEAANLRERLESLERRIAATERrLEDLEEQieelsedieSLAAEIEELEELIEE 870
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  680 LevvltEDALKSLENQtyFKSFEEN---GKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQgqfeTEMLQKKIV 756
Cdd:TIGR02168  871 L-----ESELEALLNE--RASLEEAlalLRSELEELSEELRELESKRSELRRELEELREKLAQLELR----LEGLEVRID 939
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1825597415  757 NLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELgsdiSALTLRISELESQ 829
Cdd:TIGR02168  940 NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEY----EELKERYDFLTAQ 1008
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
191-764 1.23e-13

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 76.72  E-value: 1.23e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  191 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKvrdDLQKQVKALEIDVEEQVSRFIELEQEKntelmdlrQQN 270
Cdd:COG0419    183 AKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEI---QEEQEEEELEQEIEALEERLAELEEEK--------ERL 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  271 QALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehQTREVEQLANHLKEKTDKCSELLLSKEQL 350
Cdd:COG0419    252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIE-----------RLEELEREIEELEEELEGLRALLEELEEL 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  351 QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQ 429
Cdd:COG0419    321 LEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEeLEKELEKALERLKQLEEAIQELKEELAE 400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  430 FREELENKNE---EVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKE 506
Cdd:COG0419    401 LSAALEEIQEeleELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYE 480
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  507 VEIDQLNEQVTKLQQQLKIttdNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKts 586
Cdd:COG0419    481 LELEELEEELSREKEEAEL---REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQ-- 555
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  587 mnahSLSEEADSLkhqldvviAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL-KRERESVEKIQSIPENS 665
Cdd:COG0419    556 ----QLKEELRQL--------EDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELeERLSQLEELLQSLELSE 623
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  666 VNVAIDHLSKDKPELEvvltEDALKSLENQTYFKSFEENGKGSIINLETRLLQLESTV--SAKDLELTQCYKQIKDMQEQ 743
Cdd:COG0419    624 AENELEEAEEELESEL----EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIenEEQLEEKLEELEQLEEELEQ 699
                          570       580
                   ....*....|....*....|.
gi 1825597415  744 GQFETEMLQKKIVNLQKIVEE 764
Cdd:COG0419    700 LREELEELLKKLGEIEQLIEE 720
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
274-980 8.48e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 74.32  E-value: 8.48e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  274 EKQLEKMRKFLDE-QAIDREHERDVfqqeiQKLEQQLKVVPRFQPISEhQTREVEQ--LANHLKEKTDKCSELLLSKEQL 350
Cdd:TIGR02168  178 ERKLERTRENLDRlEDILNELERQL-----KSLERQAEKAERYKELKA-ELRELELalLVLRLEELREELEELQEELKEA 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  351 QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgavEAKPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQ 429
Cdd:TIGR02168  252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISrLEQQKQILRERLANLERQLEELEAQLEE 327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  430 FREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQI------IQ 503
Cdd:TIGR02168  328 LESKLDELAEELAELEEKLEELKEE----LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslnneIE 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  504 EKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVkRNREEEIEQLNEVIEKLQQELanigQ 583
Cdd:TIGR02168  404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEEAEQAL----D 478
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  584 KTSMNAHSLSEEADSLKhqldvviaeklALEQQVETANEEMTFMKNVLKETNFKMNQLtQELFSLKRE---------RES 654
Cdd:TIGR02168  479 AAERELAQLQARLDSLE-----------RLQENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGyeaaieaalGGR 546
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  655 VEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALK---SLENQTYFKSFEENGKGSIINLETRLLQLESTVS------- 724
Cdd:TIGR02168  547 LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvl 626
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  725 -----------------------------------------------AKDLELTQCYKQIKDMQEQ---GQFETEMLQKK 754
Cdd:TIGR02168  627 vvddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKiaeLEKALAELRKE 706
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  755 IVNLQKIVEEKVAAALVSQIQLEAVQE-YAKFCQDNQTISSEPERTNIQNLNQL-REDELGSDISALTLRISELESQVVE 832
Cdd:TIGR02168  707 LEELEEELEQLRKELEELSRQISALRKdLARLEAEVEQLEERIAQLSKELTELEaEIEELEERLEEAEEELAEAEAEIEE 786
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  833 MHTSLilekEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFhsneesgffNELEALRAE 912
Cdd:TIGR02168  787 LEAQI----EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE---------EQIEELSED 853
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1825597415  913 SVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLsileKEDETEVQESKKAC 980
Cdd:TIGR02168  854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL----RELESKRSELRREL 917
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
122-445 3.54e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 68.97  E-value: 3.54e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  122 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAE 201
Cdd:COG1196    680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQER 759
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  202 AGPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEkQLEKMR 281
Cdd:COG1196    760 LEELEEELESLEEALAKLKEEIE-ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE-ELEEEI 837
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  282 KFLDEQAIDREHERDVFQQEIQKLEQQLkvvprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEI 361
Cdd:COG1196    838 EELEEKLDELEEELEELEKELEELKEEL----------EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  362 EKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKPELSLEVQLQAERDaIDRKEKEITNLE-------EQLEQFREEL 434
Cdd:COG1196    908 EKLRERLEELEAKL-------ERLEVELPELEEELEEEYEDTLETELERE-IERLEEEIEALGpvnlraiEEYEEVEERY 979
                          330
                   ....*....|.
gi 1825597415  435 ENKNEEVQQLH 445
Cdd:COG1196    980 EELKSQREDLE 990
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
131-827 7.96e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.82  E-value: 7.96e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  131 ELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLL 210
Cdd:COG1196    240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELE 319
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  211 QETEKLM--KEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRF-----------IELEQEKNTELMDLRQQNQALEKQL 277
Cdd:COG1196    320 ELEERLEelKEKIEALKEELEERETLLEELEQLLAELEEAKEELeeklsalleelEELFEALREELAELEAELAEIRNEL 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  278 EKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQER 357
Cdd:COG1196    400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  358 NEEIEKLEFRVRELEQALLVSADTFQKVEDRK-----------HFGAVEAKPELSLEVQLQAERDAI----DRKEKEITN 422
Cdd:COG1196    480 EKELSSLEARLDRLEAEQRASQGVRAVLEALEsglpgvygpvaELIKVKEKYETALEAALGNRLQAVvvenEEVAKKAIE 559
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  423 LEEQLEQFR---------EELENKNEEVQQLHMQLEIQKKESTTRLQE--------------LEQENKLFKDDMEKLGLA 479
Cdd:COG1196    560 FLKENKAGRatflpldriKPLRSLKSDAAPGFLGLASDLIDFDPKYEPavrfvlgdtlvvddLEQARRLARKLRIKYRIV 639
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  480 IKESD------AMSTQDQHVLFGKFAQI-IQEKEVEIDQLNEQVTKLQQQLKITtdNKVIEEKNELIRDLETQIeclmsd 552
Cdd:COG1196    640 TLDGDlvepsgSITGGSRNKRSSLAQKReLKELEEELAELEAQLEKLEEELKSL--KNELRSLEDLLEELRRQL------ 711
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  553 qecvkRNREEEIEQLNEVIEKLQQELANIGQKtsmnAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLK 632
Cdd:COG1196    712 -----EELERQLEELKRELAALEEELEQLQSR----LEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  633 ETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEvVLTEDALKSLENQTYFKSFEENGKGSIINL 712
Cdd:COG1196    783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE-ELEEEIEELEEKLDELEEELEELEKELEEL 861
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  713 ETRLLQLESTVSAKDLELTQCYKQIKDMQEQgqfetemLQKKIVNLQKIVEEKvaaalvsQIQLEAVQEYAKFCQDNQTI 792
Cdd:COG1196    862 KEELEELEAEKEELEDELKELEEEKEELEEE-------LRELESELAELKEEI-------EKLRERLEELEAKLERLEVE 927
                          730       740       750
                   ....*....|....*....|....*....|....*
gi 1825597415  793 SSEPERTNIQNLNQLREDELGSDISALTLRISELE 827
Cdd:COG1196    928 LPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
83-657 1.44e-10

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 66.66  E-value: 1.44e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   83 LEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIdgyadektlfERQIQEKTDIIDR 162
Cdd:COG1196    318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL----------EELFEALREELAE 387
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  163 LEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALE 242
Cdd:COG1196    388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE-ELEEQLEELRDRLKELE 466
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  243 IDVEEQVsrfiELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQeiqkLEQQLKVVPRFQP----- 317
Cdd:COG1196    467 RELAELQ----EELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGP----VAELIKVKEKYETaleaa 538
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  318 -------ISEHQTREVEQLANHLKE-KTDKCSELLLSKEQLQRDIQERNEE------IEKLEFR---------------- 367
Cdd:COG1196    539 lgnrlqaVVVENEEVAKKAIEFLKEnKAGRATFLPLDRIKPLRSLKSDAAPgflglaSDLIDFDpkyepavrfvlgdtlv 618
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  368 VRELEQALLVSADTFQKVE---------DRKHF---GAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELE 435
Cdd:COG1196    619 VDDLEQARRLARKLRIKYRivtldgdlvEPSGSitgGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELR 698
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  436 NKNEEVQQLHMQLEIQKKEST---TRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgkfaQIIQEKEVEIDQL 512
Cdd:COG1196    699 SLEDLLEELRRQLEELERQLEelkRELAALEEELEQLQSRLEELEEELEELEEELEELQ--------ERLEELEEELESL 770
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  513 NEQVTKLQQQLKITTDNKviEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSL 592
Cdd:COG1196    771 EEALAKLKEEIEELEEKR--QALQEELEELEEELE----EAERRLDALERELESLEQRRERLEQEIEELEEEIE----EL 840
                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415  593 SEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 657
Cdd:COG1196    841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
228-617 7.37e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 64.32  E-value: 7.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  228 EKVRDDLQKqvkaleidVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQ 307
Cdd:TIGR02169  173 EKALEELEE--------VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  308 QLkvvprfqpisehqtreveqlanhlkektdkcSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKVED 387
Cdd:TIGR02169  245 QL-------------------------------ASLEEELEKLTEEISELEKRLEEIEQLLEELN----------KKIKD 283
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  388 RKHFGAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKES---TTRLQELE 463
Cdd:TIGR02169  284 LGEEEQLRVKEKIgELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRdklTEEYAELK 363
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  464 QENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEK-NELIRD 541
Cdd:TIGR02169  364 EELEDLRAELEEVDKEFAETRDELKDYREKL-EKLKREINELKRELDRLQEELQRLSEELaDLNAAIAGIEAKiNELEEE 442
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415  542 LETQIECLmsdqecvkRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQV 617
Cdd:TIGR02169  443 KEDKALEI--------KKQEWKLEQLAADLSKYEQELYDLKEEYD----RVEKELSKLQRELAEAEAQARASEERV 506
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
259-806 1.19e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 63.50  E-value: 1.19e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  259 KNTELMDLRQQNQALEKQL---EKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtreveQLANHLKE 335
Cdd:TIGR04523   31 QDTEEKQLEKKLKTIKNELknkEKELKNLDKNLNKDEEKINNSNNKIKILEQQIK-----------------DLNDKLKK 93
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  336 KTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKpelSLEVQLQAERDAIDR 415
Cdd:TIGR04523   94 NKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQK-------KENKKNIDKFLTEIK---KKEKELEKLNNKYND 163
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  416 KEKEITNLEEQLEQFREELENKNEEVQQLHMQLeIQKKESTTRLQELEQENKLFKDDMEKLGlAIKESDAMSTQDQHVLF 495
Cdd:TIGR04523  164 LKKQKEELENELNLLEKEKLNIQKNIDKIKNKL-LKLELLLSNLKKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEI 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  496 GKFAQIIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECL---------------MSDQEC 555
Cdd:TIGR04523  242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSekqkeLEQNNKKIKELEKQLNQLKSEISDLnnqkeqdwnkelkseLKNQEK 321
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  556 VKRNREEEIEQLNEVIEKLQQELANIgQKTSMNAHS----LSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVL 631
Cdd:TIGR04523  322 KLEEIQNQISQNNKIISQLNEQISQL-KKELTNSESenseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  632 KETNFKMNQLTQELFSLKRERESVEK-IQSIPE--NSVNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEengkGS 708
Cdd:TIGR04523  401 QNQEKLNQQKDEQIKKLQQEKELLEKeIERLKEtiIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS----RS 476
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  709 IINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKvaaalvSQIQLEAVQEYAKFCQD 788
Cdd:TIGR04523  477 INKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK------KEKESKISDLEDELNKD 550
                          570
                   ....*....|....*...
gi 1825597415  789 NQTISSEPERTNIQNLNQ 806
Cdd:TIGR04523  551 DFELKKENLEKEIDEKNK 568
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
410-970 1.57e-09

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 63.24  E-value: 1.57e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  410 RDAIDRKEKEITNLEEQL----EQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 485
Cdd:COG0419    177 KEVIKEAKAKIEELEGQLsellEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKA 256
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  486 MSTQDQHvLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNK-VIEEKNELIRDLETQIECLMSDQecvkRNREEEI 564
Cdd:COG0419    257 RLLEIES-LELEALKIREEELRELERLLEELEEKIERLEELEREIeELEEELEGLRALLEELEELLEKL----KSLEERL 331
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  565 EQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 644
Cdd:COG0419    332 EKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  645 LFSLKRERESVEKIQSI---PENSVNVAIDHLSKDKPELEVVLTEDALKSLENQ----TYFKSFEENGKGSIINLETRLL 717
Cdd:COG0419    412 LEELEKELEELERELEEleeEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQelpeEHEKELLELYELELEELEEELS 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  718 QLESTVSAKDL--ELTQCYKQIKDMQ-EQGQFETEMLQKKIVNLQKIVEEKV-AAALVSQIQLEAVQEYAKFCQDN-QTI 792
Cdd:COG0419    492 REKEEAELREEieELEKELRELEEELiELLELEEALKEELEEKLEKLENLLEeLEELKEKLQLQQLKEELRQLEDRlQEL 571
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  793 SSEPERTNIQNLNQLREDELGSDISaltlRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQ 872
Cdd:COG0419    572 KELLEELRLLRTRKEELEELRERLK----ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAE 647
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  873 REKEKKRSPQDVE--VLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQ 950
Cdd:COG0419    648 LEELLQAALEELEekVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAE 727
                          570       580
                   ....*....|....*....|
gi 1825597415  951 VRDHLAEAKEKLSILEKEDE 970
Cdd:COG0419    728 LEELKKELEKLEKALELLEE 747
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
191-962 2.05e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 63.19  E-value: 2.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  191 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEvqcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE---KNTELMDLR 267
Cdd:COG1196    218 LKAELRELELALLLAKLKELRKELEELEEELS---RLEEELEELQEELEEAEKEIEELKSELEELREEleeLQEELLELK 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  268 QQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS- 346
Cdd:COG1196    295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEl 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 ---KEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKhfgAVEAKPELSLEVQLQAERDAIDRKEKEITNL 423
Cdd:COG1196    375 eelFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL---EDLKEELKELEAELEELQTELEELNEELEEL 451
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  424 EEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMstqdqHVLFGKFAQIIQ 503
Cdd:COG1196    452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL-----PGVYGPVAELIK 526
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  504 EKE------------------VEIDQLNEQVTKLQQQLKI-------------------TTDNKVIEEKNELIR---DLE 543
Cdd:COG1196    527 VKEkyetaleaalgnrlqavvVENEEVAKKAIEFLKENKAgratflpldrikplrslksDAAPGFLGLASDLIDfdpKYE 606
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  544 TQIECLMSDQECVKrNREEEIEQLNEVIEK-----LQQELANIGqKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVE 618
Cdd:COG1196    607 PAVRFVLGDTLVVD-DLEQARRLARKLRIKyrivtLDGDLVEPS-GSITGGSRNKRSSLAQKRELKELEEELAELEAQLE 684
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  619 TANEEmtfmknvlketnfkMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEdaLKSLENQtyf 698
Cdd:COG1196    685 KLEEE--------------LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSR--LEELEEE--- 745
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  699 ksfEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETE---MLQKKIVNLQKIVEEKVAAALVSQIQ 775
Cdd:COG1196    746 ---LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEeleELEEELEEAERRLDALERELESLEQR 822
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  776 LEAVQEYAKFCQDNQTissepERTNIQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKE 855
Cdd:COG1196    823 RERLEQEIEELEEEIE-----ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  856 KKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFhSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELL 935
Cdd:COG1196    898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE-EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976
                          810       820
                   ....*....|....*....|....*..
gi 1825597415  936 VKETNMTSLQKDLSQVRDHLAEAKEKL 962
Cdd:COG1196    977 ERYEELKSQREDLEEAKEKLLEVIEEL 1003
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
149-995 4.10e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 62.04  E-value: 4.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  149 FERQIQEKTDIIDRLEQELLCASNRLQEleaeqqqiqeerelLSRQKEAMKAEAGPVEQQLLQETEklmKEKLEVQCQAE 228
Cdd:COG1196    170 YKERKEEAERKLERTEENLERLEDLLEE--------------LEKQLEKLERQAEKAERYQELKAE---LRELELALLLA 232
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  229 KVRdDLQKQVKALEIDVEEQVSRFIELEQekntELMDLRQQNQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKLEQQ 308
Cdd:COG1196    233 KLK-ELRKELEELEEELSRLEEELEELQE----ELEEAEKEIEELKSELEE----LREELEELQEELLELKEEIEELEGE 303
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  309 LkvvprfqpisEHQTREVEQLANHLKEKTDKcselllsKEQLQRDIQERNEEIEKLEFRVRELEQAllvsadtfqkvedR 388
Cdd:COG1196    304 I----------SLLRERLEELENELEELEER-------LEELKEKIEALKEELEERETLLEELEQL-------------L 353
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  389 KHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKesttRLQELEQENKL 468
Cdd:COG1196    354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE----RLEDLKEELKE 429
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  469 FKDDMEKLGLAikesdamstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLE 543
Cdd:COG1196    430 LEAELEELQTE----------------------LEELNEELEELEEQLEELRDRLKelereLAELQEELQRLEKELSSLE 487
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  544 TQIECLMSDQECVKRNReEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEeadSLKHQLDVVIAE-----KLALEQQVE 618
Cdd:COG1196    488 ARLDRLEAEQRASQGVR-AVLEALESGLPGVYGPVAELIKVKEKYETALEA---ALGNRLQAVVVEneevaKKAIEFLKE 563
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  619 TANEEMTF-----MKNVLKETNFKMNQLTQELFSLKRERESVEKI------QSIPENSVNVAIDHLSKDKPELEVVLTED 687
Cdd:COG1196    564 NKAGRATFlpldrIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAvrfvlgDTLVVDDLEQARRLARKLRIKYRIVTLDG 643
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  688 AL-----------KSLENQTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGqfetEMLQKKIV 756
Cdd:COG1196    644 DLvepsgsitggsRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL----EELERQLE 719
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  757 NLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLRED--ELGSDISALTLRISELESQVVEMH 834
Cdd:COG1196    720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAlaKLKEEIEELEEKRQALQEELEELE 799
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  835 TSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEesgffnELEALRAESV 914
Cdd:COG1196    800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE------ELEELEAEKE 873
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  915 ATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEkEDETEVQESKKACMFEPLPIKLSKSIA 994
Cdd:COG1196    874 ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE-VELPELEEELEEEYEDTLETELEREIE 952

                   .
gi 1825597415  995 S 995
Cdd:COG1196    953 R 953
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
131-577 1.05e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.84  E-value: 1.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  131 ELSKAEGVIDGYADEKTLferQIQEKTDIIDRLEQELlcasnrlqeleaeqqqiqeerellsrqkEAMKAEAgpveqqll 210
Cdd:TIGR02168  653 DLVRPGGVITGGSAKTNS---SILERRREIEELEEKI----------------------------EELEEKI-------- 693
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  211 QETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAID 290
Cdd:TIGR02168  694 AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  291 REhERDVFQQEIQKLEQQlkvvprfqpisehqtreVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRE 370
Cdd:TIGR02168  774 EE-ELAEAEAEIEELEAQ-----------------IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  371 LEQALLVSADTFQKVEDRkhfgAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQqlhmQLE 449
Cdd:TIGR02168  836 TERRLEDLEEQIEELSED----IESLAAEIeELEELIEELESELEALLNERASLEEALALLRSELEELSEELR----ELE 907
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  450 IQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLK-ITTD 528
Cdd:TIGR02168  908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKeLGPV 987
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1825597415  529 N----KVIEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQE 577
Cdd:TIGR02168  988 NlaaiEEYEELKERYDFLTAQKE----DLTEAKETLEEAIEEIDREARERFKD 1036
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
347-703 1.05e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.85  E-value: 1.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKhfgaveAKPELSLEVQLQAERDAIDRKEKEITNLEEQ 426
Cdd:TIGR02169  172 KEKALEELEEVEENIERLDLIIDEKRQQL-------ERLRRER------EKAERYQALLKEKREYEGYELLKEKEALERQ 238
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  427 LEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKfaqiIQEKE 506
Cdd:TIGR02169  239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS----IAEKE 314
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  507 VEIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQELANIGQK-- 584
Cdd:TIGR02169  315 RELEDAEERLAKLEAE---------IDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRAELEEVDKEfa 381
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  585 TSMNAHS--------LSEEADSLKHQLDVVIAEKLALEQQVETANEEM-------TFMKNVLKETNFKMNQLTQELFSLK 649
Cdd:TIGR02169  382 ETRDELKdyreklekLKREINELKRELDRLQEELQRLSEELADLNAAIagieakiNELEEEKEDKALEIKKQEWKLEQLA 461
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1825597415  650 RERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEdALKSLENQTYFKSFEE 703
Cdd:TIGR02169  462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-ARASEERVRGGRAVEE 514
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1279-1629 1.53e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 60.11  E-value: 1.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1279 LEQRIQEQGVEYQAAMECLQKAdrRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSM 1358
Cdd:COG1196    686 LEEELKSLKNELRSLEDLLEEL--RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1359 KDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWA 1438
Cdd:COG1196    764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1439 LEKEKAKLGRSEERdKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLE 1518
Cdd:COG1196    844 LDELEEELEELEKE-LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1519 SEKVRIREMSSTLDRERELhaqlqssdgtgqsrpplpsedllkELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKD 1598
Cdd:COG1196    923 RLEVELPELEEELEEEYED------------------------TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEER 978
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1825597415 1599 RQVHRKTLQTEQEANTEGQKKMHELQSKVED 1629
Cdd:COG1196    979 YEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
PTZ00121 PTZ00121
MAEBL; Provisional
1289-1661 2.65e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 59.38  E-value: 2.65e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1289 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVElssMKDRATELQEQ 1368
Cdd:PTZ00121  1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---EAKKADEAKKK 1452
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1369 lSSEKMVVAELKSELAQTKLELETTLKAQH-KHLKELEAFRLEVKDKTDEVHllndTLASEQKKSRELQWALEKEKAKLG 1447
Cdd:PTZ00121  1453 -AEEAKKAEEAKKKAEEAKKADEAKKKAEEaKKADEAKKKAEEAKKKADEAK----KAAEAKKKADEAKKAEEAKKADEA 1527
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1448 RSEErDKEELEDLKFSLESQKQRNLQLNLLLEQQkqllnESQQKIESQRmlydaqlSEEQGRNLEL---QVLLESEKVRI 1524
Cdd:PTZ00121  1528 KKAE-EAKKADEAKKAEEKKKADELKKAEELKKA-----EEKKKAEEAK-------KAEEDKNMALrkaEEAKKAEEARI 1594
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1525 REMSSTLDRERELHA-QLQSSDGTGQSRPPLPSEDLLK----ELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDR 1599
Cdd:PTZ00121  1595 EEVMKLYEEEKKMKAeEAKKAEEAKIKAEELKKAEEEKkkveQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 1600 QVHRKTLQTEQEAN--TEGQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:PTZ00121  1675 KKAEEAKKAEEDEKkaAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
228-849 2.75e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 59.31  E-value: 2.75e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  228 EKVRDDLQKQVKALEI--DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEqaidREHERDVFQQEIQKL 305
Cdd:PRK03918   144 DESREKVVRQILGLDDyeNAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE----VLREINEISSELPEL 219
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  306 EQQLKVVprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKV 385
Cdd:PRK03918   220 REELEKL-------EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----------EKV 282
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  386 EDRKHFGAvEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFRE---ELENKNEEVQqlhmQLEIQKKESTTRLQEL 462
Cdd:PRK03918   283 KELKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLE----ELKKKLKELEKRLEEL 357
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  463 EQENKLFKDDMEKLGLAIKESDAMSTQDqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKittdnKVIEEKNEL---I 539
Cdd:PRK03918   358 EERHELYEEAKAKKEELERLKKRLTGLT-----------PEKLEKELEELEKAKEEIEEEIS-----KITARIGELkkeI 421
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  540 RDLETQIECLMSDQ-ECVKRNREEEIEQLNEVIEKLQQELANIgQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVE 618
Cdd:PRK03918   422 KELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAELKRI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  619 TAnEEMTFMKNVLKETNF-KMNQLTQELFSLKRERESVEKIQSIPENSVNvAIDHLSKDKPELEVVL--TEDALKSLENQ 695
Cdd:PRK03918   501 LA-EQLKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLdeLEEELAELLKE 578
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  696 tyfksFEENGKGSIINLETRLLQLEStVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIveEKVAAALVSQIQ 775
Cdd:PRK03918   579 -----LEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAET--EKRLEELRKELE 650
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415  776 lEAVQEYakfcqdnqtisSEPERTNIQNlnqlREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEK 849
Cdd:PRK03918   651 -ELEKKY-----------SEEEYEELRE----EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1361-1661 2.76e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 59.34  E-value: 2.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1361 RATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTL--ASEQKKSRELQWA 1438
Cdd:COG1196    226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELleLKEEIEELEGEIS 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1439 LEKEKAKLGRSEERDKEE-LEDLKFSLESQKQRNLQLNllleqqkqllnESQQKIESQRMLYDAQLSEEQGRNLELQVLL 1517
Cdd:COG1196    306 LLRERLEELENELEELEErLEELKEKIEALKEELEERE-----------TLLEELEQLLAELEEAKEELEEKLSALLEEL 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1518 ESEKVRIREMSSTLDRER-ELHAQLQSsdgtgqsrpplpsedlLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQME 1596
Cdd:COG1196    375 EELFEALREELAELEAELaEIRNELEE----------------LKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 1597 KDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:COG1196    439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGV 503
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1302-1636 3.84e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 58.96  E-value: 3.84e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1302 RRSLLSEIQALHAQMNGRKITLKREQESekpsqelLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKS 1381
Cdd:COG1196    665 QKRELKELEEELAELEAQLEKLEEELKS-------LKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1382 ELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLgrseerdkEELEDLK 1461
Cdd:COG1196    738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL--------EEAERRL 809
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1462 FSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERElhaql 1541
Cdd:COG1196    810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE----- 884
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1542 qssdgtgqsrpplpsedLLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEAntEGQKKMH 1621
Cdd:COG1196    885 -----------------EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE--YEDTLET 945
                          330
                   ....*....|....*
gi 1825597415 1622 ELQSKVEDLQRQLEE 1636
Cdd:COG1196    946 ELEREIERLEEEIEA 960
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
100-444 4.21e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.91  E-value: 4.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  100 QKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEA 179
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  180 EQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEK 259
Cdd:TIGR02168  755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK-ALREALDELRAELTLLNEEAANLRERLESLERRI 833
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  260 NtelmDLRQQNQALEKQLEKMRkfldEQAIDREHERDVFQQEIQKLEQQLKVVprfQPISEHQTREVEQLANHLKEKTDK 339
Cdd:TIGR02168  834 A----ATERRLEDLEEQIEELS----EDIESLAAEIEELEELIEELESELEAL---LNERASLEEALALLRSELEELSEE 902
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  340 CSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFqKVEDRKHFGAVEAKPELSLEVQLQAERDaIDRKEKE 419
Cdd:TIGR02168  903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAEALENKIEDDEEEARRR-LKRLENK 980
                          330       340       350
                   ....*....|....*....|....*....|..
gi 1825597415  420 ITNL-------EEQLEQFREELENKNEEVQQL 444
Cdd:TIGR02168  981 IKELgpvnlaaIEEYEELKERYDFLTAQKEDL 1012
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
413-765 4.35e-08

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 58.49  E-value: 4.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  413 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQ 489
Cdd:TIGR04523   28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLnkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  490 DQHVLFGKFAQIIQeKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLmsdqECVKRNREEEI 564
Cdd:TIGR04523  108 INSEIKNDKEQKNK-LEVELNKLEKQKKENKKNIDkflteIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEK 182
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  565 EQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 644
Cdd:TIGR04523  183 LNIQKNIDKIKNKLLKLELLLS-NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  645 LFSLKREREsvEKIQSIPENsvNVAIDHLSKDKPELEVVLTEdaLKSLENQTY---FKSFEENGKGSIINLETRLLQLES 721
Cdd:TIGR04523  262 QNKIKKQLS--EKQKELEQN--NKKIKELEKQLNQLKSEISD--LNNQKEQDWnkeLKSELKNQEKKLEEIQNQISQNNK 335
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 1825597415  722 TVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEK 765
Cdd:TIGR04523  336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN 379
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1324-1655 4.66e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.53  E-value: 4.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1324 KREQESEKpSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLssekmvvAELKSELAQTKLELETTLKAQHKHLKE 1403
Cdd:TIGR02168  218 LKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAEL-------QELEEKLEELRLEVSELEEEIEELQKE 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1404 LEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEE---RDKEELEDLKFSLESQKQRNLQLNLLLEQ 1480
Cdd:TIGR02168  290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaELEEKLEELKEELESLEAELEELEAELEE 369
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1481 QKQLLNESQQKIESQRMLYdAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQlqssdgtgqsrppLPSEDLL 1560
Cdd:TIGR02168  370 LESRLEELEEQLETLRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK-------------KLEEAEL 435
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1561 KELQKQLEEKHSRIVELLNETEkykldslQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSkVEDLQRQLEEKRQQ 1640
Cdd:TIGR02168  436 KELQAELEELEEELEELQEELE-------RLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG 507
                          330
                   ....*....|....*
gi 1825597415 1641 VYKLDLEGQRLQGIM 1655
Cdd:TIGR02168  508 VKALLKNQSGLSGIL 522
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
191-523 5.79e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 58.16  E-value: 5.79e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  191 LSRQKeAMKAEAGPVEQQLlqetekLMKEKLEVQCQAEKVRDDLQkqvkaleiDVEEQVSRFIELEQEKNTELMDLRQQN 270
Cdd:TIGR02169  210 AERYQ-ALLKEKREYEGYE------LLKEKEALERQKEAIERQLA--------SLEEELEKLTEEISELEKRLEEIEQLL 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  271 QALEKQLEKMrkfldeqaidREHERDVFQQEIQKLEQQLKVVPRFQPISEhqtREVEQLANHLKEKTDKCSELLLSKEQL 350
Cdd:TIGR02169  275 EELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEEL 341
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  351 QRDIQERNEEIEKLEFRVRELEQALlvsADTFQKVEDrkhfgaveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQF 430
Cdd:TIGR02169  342 EREIEEERKRRDKLTEEYAELKEEL---EDLRAELEE--------------VDKEFAETRDELKDYREKLEKLKREINEL 404
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  431 REELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEID 510
Cdd:TIGR02169  405 KRELDRLQEELQRLSEELADLNAA----IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQELYDLKEEYD 479
                          330
                   ....*....|...
gi 1825597415  511 QLNEQVTKLQQQL 523
Cdd:TIGR02169  480 RVEKELSKLQREL 492
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
253-660 6.54e-08

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 57.72  E-value: 6.54e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  253 IELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQaidreherdvfQQEIQKLEQQLKVvprfqpISEHQTREVEQLANH 332
Cdd:TIGR04523  210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK-----------TTEISNTQTQLNQ------LKDEQNKIKKQLSEK 272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  333 LKEkTDKCSELLlskEQLQRDIQERNEEIEKLEfrvRELEQALLVSADTFQKVEDRKhfgaveakpELSLEVQLQAERDA 412
Cdd:TIGR04523  273 QKE-LEQNNKKI---KELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKK---------LEEIQNQISQNNKI 336
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  413 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQenklFKDDMEKLGLAIKESDAMSTQDQH 492
Cdd:TIGR04523  337 ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN----LESQINDLESKIQNQEKLNQQKDE 412
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  493 VLfGKFAQIIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREE---EI 564
Cdd:TIGR04523  413 QI-KKLQQEKELLEKEIERLKETIIKNNSEIKdltnqDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkqkEL 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  565 EQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFK--MNQLT 642
Cdd:TIGR04523  492 KSKEKELKKLNEEKKELEEKVK----DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEkeIDEKN 567
                          410
                   ....*....|....*...
gi 1825597415  643 QELFSLKRERESVEKIQS 660
Cdd:TIGR04523  568 KEIEELKQTQKSLKKKQE 585
PTZ00121 PTZ00121
MAEBL; Provisional
87-605 6.68e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 58.23  E-value: 6.68e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   87 KVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQE 166
Cdd:PTZ00121  1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  167 LLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAgpveqqllqeteklmKEKLEVQCQAEKVRddlqkqvKALEIDVE 246
Cdd:PTZ00121  1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE---------------KKKADELKKAEELK-------KAEEKKKA 1566
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  247 EQVSRfieLEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQA------IDREHERDVFQQEIQKLEQQLKVVPRFQPISE 320
Cdd:PTZ00121  1567 EEAKK---AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmkaeeAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  321 HQTREVEQLANHLKEKTDKCSELLLSKEQLQRdiqeRNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL 400
Cdd:PTZ00121  1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKK----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  401 SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNeEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 480
Cdd:PTZ00121  1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK-KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  481 KESDAMSTQDQHVLFGKFAQII--QEKEVEIDQLNEQVTKLQQQLKittDNKVIEEKNELIRDLETQIECLMSDQECVKR 558
Cdd:PTZ00121  1799 KIKDIFDNFANIIEGGKEGNLVinDSKEMEDSAIKEVADSKNMQLE---EADAFEKHKFNKNNENGEDGNKEADFNKEKD 1875
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*..
gi 1825597415  559 NREEEIEQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDV 605
Cdd:PTZ00121  1876 LKEDDEEEIEEADEIEKIDKDDIEREIP-NNNMAGKNNDIIDDKLDK 1921
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
193-978 8.19e-08

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 57.67  E-value: 8.19e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  193 RQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQA 272
Cdd:pfam02463  205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  273 LEKQLEKMRKFLdeqaidreherdvfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKcSELLLSKEQLQR 352
Cdd:pfam02463  285 EEELKLLAKEEE--------------ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEI-EELEKELKELEI 349
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  353 DIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRkhfgaveakpELSLEVQLQAERDAIDRKEKEITNLEEQLEQFRE 432
Cdd:pfam02463  350 KREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER----------LSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  433 ELENKNEEvqqlhmqlEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDamstqdqhvlfgkfaqIIQEKEVEIDQL 512
Cdd:pfam02463  420 LLKEEKKE--------ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD----------------ELELKKSEDLLK 475
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  513 NEQVTKLQQQLKittdnkvieekneliRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSL 592
Cdd:pfam02463  476 ETQLVKLQEQLE---------------LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  593 SEEADSlkhqlDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDH 672
Cdd:pfam02463  541 YKVAIS-----TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  673 LSKDKPELEVVLTEDALKSLENQTYFKSFEenGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQ 752
Cdd:pfam02463  616 DEDDKRAKVVEGILKDTELTKLKESAKAKE--SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEE 693
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  753 KKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELGSDISALTLRISELESQVVE 832
Cdd:pfam02463  694 ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  833 MHTSLILEKEQVEIAEKNVLEKE-KKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRA 911
Cdd:pfam02463  774 KELAEEREKTEKLKVEEEKEEKLkAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415  912 ESVATK----AELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEKEDETEVQESKK 978
Cdd:pfam02463  854 EELERLeeeiTKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
82-647 8.35e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 57.80  E-value: 8.35e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   82 SLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIID 161
Cdd:COG1196    398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  162 RLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVE---------------------QQLLQETEKLMKEK 220
Cdd:COG1196    478 RLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAelikvkekyetaleaalgnrlQAVVVENEEVAKKA 557
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  221 LEV--QCQAEKVRD---DLQKQVKALEIDVEEQV----SRFIELEQE---------KNTELMDLRQQNQALEKQLEKMRK 282
Cdd:COG1196    558 IEFlkENKAGRATFlplDRIKPLRSLKSDAAPGFlglaSDLIDFDPKyepavrfvlGDTLVVDDLEQARRLARKLRIKYR 637
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  283 F--LD-----------------EQAIDREHERDVFQQEIQKLEQQLKvvPRFQPISEHQtREVEQLANHLKEKTDKCSEL 343
Cdd:COG1196    638 IvtLDgdlvepsgsitggsrnkRSSLAQKRELKELEEELAELEAQLE--KLEEELKSLK-NELRSLEDLLEELRRQLEEL 714
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  344 LLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDR--KHFGAVEAKPE--LSLEVQLQAERDAIDRKEKE 419
Cdd:COG1196    715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERleELEEELESLEEalAKLKEEIEELEEKRQALQEE 794
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  420 ITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAmSTQDQHVLFGKFA 499
Cdd:COG1196    795 LEELEEELEEAERRLDALERELESLEQRRERLEQE----IEELEEEIEELEEKLDELEEELEELEK-ELEELKEELEELE 869
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  500 QIIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNE---------- 569
Cdd:COG1196    870 AEKEELEDELKELEEEKEELEEELRELESE--LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEeyedtletel 947
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  570 --VIEKLQQELANIGQktsMNAHSLsEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFS 647
Cdd:COG1196    948 erEIERLEEEIEALGP---VNLRAI-EEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFS 1023
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1370-1661 8.63e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.76  E-value: 8.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1370 SSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRS 1449
Cdd:TIGR02168  666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1450 EER------DKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGR----NLELQVLLES 1519
Cdd:TIGR02168  746 EERiaqlskELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllNEEAANLRER 825
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1520 EKVRIREMSSTLDRERELHAQLQSSDGTGQSrpplpSEDLLKELQKQLEEKHSRIVELLNEtekykldslqtRQQMEKDR 1599
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEALLNE-----------RASLEEAL 889
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1825597415 1600 QVHRKTLQTEQEantegqkKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:TIGR02168  890 ALLRSELEELSE-------ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
90-633 8.67e-08

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 57.46  E-value: 8.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   90 QTELMRESFRQKQEATES-LKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELL 168
Cdd:COG0419    222 QEEQEEEELEQEIEALEErLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIE 301
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  169 CASNRLQELEAEQQQIQEERELLSRQKEAMKAeagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQ 248
Cdd:COG0419    302 ELEEELEGLRALLEELEELLEKLKSLEERLEK-----LEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKE 376
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  249 VSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHErdvfQQEIQKLEQQLKVVPRfqpiSEHQTREVEQ 328
Cdd:COG0419    377 LEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEEL----ERELEELEEEIKKLEE----QINQLESKEL 448
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  329 LANHLKEKTDKCSELLLSkeqlqRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQA 408
Cdd:COG0419    449 MIAELAGAGEKCPVCGQE-----LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLEL 523
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  409 ERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMST 488
Cdd:COG0419    524 EEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  489 QdqhvLFGKFAQIiqEKEVEIDQLNEQVTKLQQQLKITTDNKvieEKNELIRDLETQIECLMSDQECVKRNREEEIEQLN 568
Cdd:COG0419    604 E----LEERLSQL--EELLQSLELSEAENELEEAEEELESEL---EKLNLQAELEELLQAALEELEEKVEELEAEIRREL 674
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415  569 EVIEKLQQELANIGqktsmNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKE 633
Cdd:COG0419    675 QRIENEEQLEEKLE-----ELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKE 734
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
126-661 2.13e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 56.18  E-value: 2.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  126 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQEleaeqqqiqeerellsrqkeaMKAEAGPV 205
Cdd:TIGR04523  242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ---------------------LKSEISDL 300
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  206 EQQLLQETEKLMKEKLEVQcqaEKVRDDLQKQVKaleiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfld 285
Cdd:TIGR04523  301 NNQKEQDWNKELKSELKNQ---EKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN--- 370
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  286 eQAIDREHERDVFQQEIQKLEQQLKVVprfqpisEHQTREVEQLAnhlKEKTDKCSELLLSKEQLQRDIQERNEEIEKLE 365
Cdd:TIGR04523  371 -EIEKLKKENQSYKQEIKNLESQINDL-------ESKIQNQEKLN---QQKDEQIKKLQQEKELLEKEIERLKETIIKNN 439
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  366 FRVRELEQALLVSADTFQKVEDRKhfgaveakpelslevqlQAERDAIDRKEKEITNLEEQLEQFREELENKNEEvqqlH 445
Cdd:TIGR04523  440 SEIKDLTNQDSVKELIIKNLDNTR-----------------ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE----L 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  446 MQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKesdamstqdqhvlfgkfaqiiqEKEVEIDQLNEQVTKLQQQLKI 525
Cdd:TIGR04523  499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKK----------------------EKESKISDLEDELNKDDFELKK 556
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  526 TTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDV 605
Cdd:TIGR04523  557 ENLEKEIDEKNKEIEELKQTQKSLKKKQE----EKQELIDQKEKEKKDLIKEIEEKEKKIS----SLEKELEKAKKENEK 628
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415  606 VIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLtqelfsLKRERESVEKIQSI 661
Cdd:TIGR04523  629 LSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI------IKKIKESKTKIDDI 678
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
122-467 2.25e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 56.23  E-value: 2.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  122 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQqqiqeerELLSRQKEAMKAE 201
Cdd:TIGR02169  708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI-------EELEEDLHKLEEA 780
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  202 AGPVEQQLLQEteklmkeklevqcQAEKVRDDLQKqvkaLEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR 281
Cdd:TIGR02169  781 LNDLEARLSHS-------------RIPEIQAELSK----LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  282 KfLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisEHQTrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEI 361
Cdd:TIGR02169  844 D-LKEQIKSIEKEIENLNGKKEELEEELE---------ELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  362 EKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEvQLQAERdaiDRKEKEITNLEE----QLEQFREELENK 437
Cdd:TIGR02169  913 EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAEL---QRVEEEIRALEPvnmlAIQEYEEVLKRL 988
                          330       340       350
                   ....*....|....*....|....*....|
gi 1825597415  438 NeEVQQLHMQLEIQKKESTTRLQELEQENK 467
Cdd:TIGR02169  989 D-ELKEKRAKLEEERKAILERIEEYEKKKR 1017
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
429-657 3.21e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 55.84  E-value: 3.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  429 QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVE 508
Cdd:TIGR02169  671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-----KLKERLEELEED 745
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  509 IDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECL--MSDQECVkRNREEEIEQLNEVIEKLQQELANIGQKTS 586
Cdd:TIGR02169  746 LSSLEQEIENVKSELK--ELEARIEELEEDLHKLEEALNDLeaRLSHSRI-PEIQAELSKLEEEVSRIEARLREIEQKLN 822
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415  587 ---MNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 657
Cdd:TIGR02169  823 rltLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
144-658 4.02e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 55.46  E-value: 4.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  144 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQeleaEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEV 223
Cdd:PRK03918   200 KELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  224 QCQAEKVRDDLQKQVKALE-IDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEI 302
Cdd:PRK03918   276 EELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRL 354
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  303 QKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL-LSKEQLQRDIQERNEEIEKLEFRVRELEQAL--LVSA 379
Cdd:PRK03918   355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEEIEEEISKITARIGELKKEIKELKKAIeeLKKA 434
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  380 DTFQKVEDRKhfgaVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELE---NKNEEVQQLHMQLE----IQK 452
Cdd:PRK03918   435 KGKCPVCGRE----LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlKKESELIKLKELAEqlkeLEE 510
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  453 KESTTRLQELEQENKLFKDDMEKLG-----LAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKL------QQ 521
Cdd:PRK03918   511 KLKKYNLEELEKKAEEYEKLKEKLIklkgeIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveEL 590
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  522 QLKITTDNKVIEEKNELiRDLETQIECLMSDQECVKRNREEEIEQLNEV---IEKLQQELANIGQKTSMNAH-SLSEEAD 597
Cdd:PRK03918   591 EERLKELEPFYNEYLEL-KDAEKELEREEKELKKLEEELDKAFEELAETekrLEELRKELEELEKKYSEEEYeELREEYL 669
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415  598 SLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKEtnfkMNQLTQELFSLKRERESVEKI 658
Cdd:PRK03918   670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE----REKAKKELEKLEKALERVEEL 726
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
232-543 4.22e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 55.03  E-value: 4.22e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  232 DDLQKQVKAL--EIDVEEQVSRFIELEQEK-NTELMDLRQQNQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEQQ 308
Cdd:COG4372     77 DDIRPQLRALrtELGTAQGEKRAAETEREAaRSELQKARQEREAVRQELAAARQ-----------NLAKAQQELARLTKQ 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  309 lkvvprfqpiSEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfqkvEDR 388
Cdd:COG4372    146 ----------AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQ------------EAQ 203
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  389 khfgaveakpelslevQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL-----EIQKKESttRLQELE 463
Cdd:COG4372    204 ----------------NLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIaaraeQIRERER--QLQRLE 265
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  464 QENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLE 543
Cdd:COG4372    266 TAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRRSPRRGRRQRP 345
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1302-1636 4.67e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 55.49  E-value: 4.67e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1302 RRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKS 1381
Cdd:COG1196    195 LEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1382 ELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEErDKEELEDLK 1461
Cdd:COG1196    275 ELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET-LLEELEQLL 353
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1462 FSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMlydAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQL 1541
Cdd:COG1196    354 AELEEAKEELEEKLSALLEELEELFEALREELAELE---AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1542 QSSDGTGQSRpPLPSEDLLKELQKQLEEKHSRIVElLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMH 1621
Cdd:COG1196    431 EAELEELQTE-LEELNEELEELEEQLEELRDRLKE-LERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
                          330
                   ....*....|....*
gi 1825597415 1622 ELQSKVEDLQRQLEE 1636
Cdd:COG1196    509 ALESGLPGVYGPVAE 523
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
347-695 5.03e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 55.11  E-value: 5.03e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfqkVEDRKHFGAVEAKPELSLEVQ-LQAERDAI----DRKEKEIT 421
Cdd:pfam15921   73 KEHIERVLEEYSHQVKDLQRRLNESNE-----------LHEKQKFYLRQSVIDLQTKLQeMQMERDAMadirRRESQSQE 141
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  422 NLEEQLEQFREELEN----KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGK 497
Cdd:pfam15921  142 DLRNQLQNTVHELEAakclKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTIHFRSLGSA 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  498 FAQIIQEKEVEIDQLNEQVTKLQQQ---LKITTDNKVieekNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKL 574
Cdd:pfam15921  222 ISKILRELDTEISYLKGRIFPVEDQleaLKSESQNKI----ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  575 QQELANIGQ----KTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL-- 648
Cdd:pfam15921  298 QSQLEIIQEqarnQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLdd 377
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415  649 ----------KRERE-SVEKIQSI----PENSVNVAIDHLSK--DKPELEVVLTEDALKSLENQ 695
Cdd:pfam15921  378 qlqklladlhKREKElSLEKEQNKrlwdRDTGNSITIDHLRRelDDRNMEVQRLEALLKAMKSE 441
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1280-1586 5.72e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 55.11  E-value: 5.72e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1280 EQRIQEQGVEYQAAMECLQKADRRslLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQML-------EMQ 1352
Cdd:COG1196    224 ELELALLLAKLKELRKELEELEEE--LSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLelkeeieELE 301
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1353 VELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKS 1432
Cdd:COG1196    302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1433 RELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYD---AQLSEEQGR 1509
Cdd:COG1196    382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEeleEQLEELRDR 461
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1825597415 1510 NLELQVLLESEKVRIREMSSTLDRERELHAQLQSSDGTGQsrpplPSEDLLKELQKQLEEKHSRIVELLNETEKYKL 1586
Cdd:COG1196    462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ-----GVRAVLEALESGLPGVYGPVAELIKVKEKYET 533
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
196-544 7.36e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 54.72  E-value: 7.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  196 EAMKAEA-GPVEQQL--LQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEI------DVEEQVSRFIELEQEK------- 259
Cdd:pfam15921  436 KAMKSECqGQMERQMaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmtleSSERTVSDLTASLQEKeraieat 515
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  260 NTELMDLRQQnqaLEKQLEKMRKFLDEQaidrEHERDVfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANhlkEKTDK 339
Cdd:pfam15921  516 NAEITKLRSR---VDLKLQELQHLKNEG----DHLRNV-QTECEALKLQMAEKDKVIEILRQQIENMTQLVG---QHGRT 584
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  340 CSELLLSKEQLQRDIQERNEEIEKLEF-------RVRELEQAllVSADTFQKVEdrkhfgAVEAKPELSLEVQ-LQAERD 411
Cdd:pfam15921  585 AGAMQVEKAQLEKEINDRRLELQEFKIlkdkkdaKIRELEAR--VSDLELEKVK------LVNAGSERLRAVKdIKQERD 656
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  412 AIDRKEK----EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTrlqELEQENKLFKDDMEKLGLAIKESDAMS 487
Cdd:pfam15921  657 QLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDGHAMKVAMGMQ 733
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1825597415  488 TQdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNK--VIEEKNELIRDLET 544
Cdd:pfam15921  734 KQ------------ITAKRGQIDALQSKIQFLEEAMTNANKEKhfLKEEKNKLSQELST 780
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
90-394 1.92e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.14  E-value: 1.92e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   90 QTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLavelskaEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLC 169
Cdd:TIGR02168  749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL-------EAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  170 ASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQ----------ETEKLMKEKLEVQCQAEKVRDDLQKQVK 239
Cdd:TIGR02168  822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEleelieelesELEALLNERASLEEALALLRSELEELSE 901
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  240 ALEiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAID-----------REHERDVFQQEIQKLEQQ 308
Cdd:TIGR02168  902 ELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleeaealenkIEDDEEEARRRLKRLENK 980
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  309 LKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLeFRvreleqallvsaDTFQKVedR 388
Cdd:TIGR02168  981 IK---ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER-FK------------DTFDQV--N 1042

                   ....*.
gi 1825597415  389 KHFGAV 394
Cdd:TIGR02168 1043 ENFQRV 1048
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
205-656 2.37e-06

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 52.81  E-value: 2.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  205 VEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALeIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFL 284
Cdd:pfam05557   14 LQNEKKQMELEHKRARIELERKASALARQLERESDRN-QELQKRIRLLEKREAEAEEALREQAELNRLKKKNLEALNKKL 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  285 DEQAIDREHERDV----------FQQEIQKLEQQLKvvprfqpiseHQTREVEQLANHLKEKTDKCSELllskEQLQRDI 354
Cdd:pfam05557   93 NEKESQLADAREVisclknelseLRRQIQRQELELS----------STNSELEELQERLDLQKAKAQEA----EQLRQNL 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  355 QERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKhfGAVEAKPELSLEVQLQAERDAIDRKEKEITN-LEEQLEQFREE 433
Cdd:pfam05557  159 EAQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSK--SELARIPELERELERLREHNKHLNENIENKLlLKEEVEDLKRK 236
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  434 LEnKNEEVQQLHMQLEIQKKESTTRLQELEqenKLFKDDmeklGLAIKESDAMSTQDQHVLFG-------KFAQIIQEKE 506
Cdd:pfam05557  237 LE-REEGYREELATLELEKEKLEQELKSWE---KLAQDT----GLNLRSPEDLSRRIEQLQQReitlkeeNSSLTSSARQ 308
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  507 VEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE----------------EEIEQLNEV 570
Cdd:pfam05557  309 LEKAQRELEQELAQYLKNIEDLNKKLKRHKALVRRLQRRVLLLTKERDGMRAILEsydkeltpsnyspqllERIEEAEDM 388
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  571 IEKLQQELANIGQKTSMnahsLSEEADSLKHQLDVVIAEKLALEQQVETAneEMTFMKNVLKETNFKMNQLTQELFSLKR 650
Cdd:pfam05557  389 TQDMQAHNEEMEAQLSV----AEEELGGYKQQATTLERELQALRQQESLA--DPSYSKEEVDSLRRKLETLEAERQRLRE 462

                   ....*.
gi 1825597415  651 ERESVE 656
Cdd:pfam05557  463 QKNELE 468
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
254-647 2.76e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 52.76  E-value: 2.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  254 ELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQ----L 329
Cdd:TIGR02169  685 GLKRELSSLQSELRRIENRLDELSQELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkeL 763
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  330 ANHLKEKTDKCSELLLSKEQLQRD-----IQERNEEIEKLEFRVRELEQALlvsaDTFQKVEDRKHFgaveAKPELSLEV 404
Cdd:TIGR02169  764 EARIEELEEDLHKLEEALNDLEARlshsrIPEIQAELSKLEEEVSRIEARL----REIEQKLNRLTL----EKEYLEKEI 835
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  405 Q-LQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkkestTRLQELEQEnklfKDDMEKLGLAIKES 483
Cdd:TIGR02169  836 QeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE-------SRLGDLKKE----RDELEAQLRELERK 904
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  484 damstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQIECLMSdqecvkrnreee 563
Cdd:TIGR02169  905 ------------------IEELEAQIEKKRKRLSELKAKLEALEEE--LSEIEDPKGEDEEIPEEELS------------ 952
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  564 IEQLNEVIEKLQQELANIGQkTSMNAHSLSEEA----DSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKETNFKMN 639
Cdd:TIGR02169  953 LEDVQAELQRVEEEIRALEP-VNMLAIQEYEEVlkrlDELKEKRAKLEEERKAILERIEEYEKK---KREVFMEAFEAIN 1028

                   ....*...
gi 1825597415  640 QLTQELFS 647
Cdd:TIGR02169 1029 ENFNEIFA 1036
PTZ00121 PTZ00121
MAEBL; Provisional
83-800 3.14e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.84  E-value: 3.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   83 LEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQL--AVELSKAEGVIDGYADEKTLFERQIQEktdiI 160
Cdd:PTZ00121  1142 AEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAARKAEEERKAEE----A 1217
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  161 DRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQvKA 240
Cdd:PTZ00121  1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE----EARMAHFARRQAAIKAEEARKADELKKAEEKK-KA 1292
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  241 LEIDVEEQVSRFIELEQ--EKNTELMDLRQQNQALEKQLEKMRKfldeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPI 318
Cdd:PTZ00121  1293 DEAKKAEEKKKADEAKKkaEEAKKADEAKKKAEEAKKKADAAKK----KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  319 SEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDiQERNEEIEKLEFRVRELEQAlLVSADTFQKVEDRKHfGAVEAKP 398
Cdd:PTZ00121  1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED-KKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKK-KAEEAKK 1445
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  399 ELSLEVQLQAERDAIDRKEK-----EITNLEEQLEQFR--EELENKNEEVQQLHMQLEiQKKESTTRLQELEQ-ENKLFK 470
Cdd:PTZ00121  1446 ADEAKKKAEEAKKAEEAKKKaeeakKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAK-KAAEAKKKADEAKKaEEAKKA 1524
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  471 DDMEKLGLAIKESDAMSTQDQHvlfgKFAQIIQEKEVeidQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLE-TQIECL 549
Cdd:PTZ00121  1525 DEAKKAEEAKKADEAKKAEEKK----KADELKKAEEL---KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEeARIEEV 1597
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  550 MSDQECVKRNREEEI----------EQLN--EVIEKLQQELANIGQKTSMNAHSLSEEADSL---------KHQLDVVIA 608
Cdd:PTZ00121  1598 MKLYEEEKKMKAEEAkkaeeakikaEELKkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENkikaaeeakKAEEDKKKA 1677
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  609 EKLALEQQVETANEEMTFMKnvlKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDA 688
Cdd:PTZ00121  1678 EEAKKAEEDEKKAAEALKKE---AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  689 LKsleNQTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKK--IVNLQK--IVEE 764
Cdd:PTZ00121  1755 EK---KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlVINDSKemEDSA 1831
                          730       740       750
                   ....*....|....*....|....*....|....*.
gi 1825597415  765 KVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTN 800
Cdd:PTZ00121  1832 IKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1282-1661 5.61e-06

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 51.68  E-value: 5.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1282 RIQEQGVEYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDR 1361
Cdd:COG0419    182 EAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEI 261
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1362 ATELQEQLSSEKMVVAELKSELAQTKLELETtLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEK 1441
Cdd:COG0419    262 ESLELEALKIREEELRELERLLEELEEKIER-LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1442 EKAKLGRSEERDKE----------ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNL 1511
Cdd:COG0419    341 LESELEELAEEKNElaklleerlkELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELE 420
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1512 ELQVLLESEKVRIREMSSTLDRERELHAQLQSSDGTGqSRPPLPSEDLLKELQKQLEEKHSRIVELLNETEKYKLDSLQT 1591
Cdd:COG0419    421 ELERELEELEEEIKKLEEQINQLESKELMIAELAGAG-EKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAEL 499
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 1592 RQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEE-----KRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:COG0419    500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEEleelkEKLQLQQLKEELRQLEDRLQELKEL 574
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
348-1004 5.71e-06

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 51.68  E-value: 5.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  348 EQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQkvEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQL 427
Cdd:COG0419    174 ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE--EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  428 EQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKEsdamstqdqhvlfgkfAQIIQEKEV 507
Cdd:COG0419    252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEE----------------LEGLRALLE 315
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  508 EIDQLNEQVTKLQQQL-KITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKts 586
Cdd:COG0419    316 ELEELLEKLKSLEERLeKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE-- 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  587 mnahsLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKI----QSIP 662
Cdd:COG0419    394 -----LKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCpvcgQELP 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  663 ENSVNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEEngkgsIINLETRLLQLESTVSAKDLELTQCYKQIKDMQE 742
Cdd:COG0419    469 EEHEKELLELYELELEELEEELSREKEEAELREEIEELEKE-----LRELEEELIELLELEEALKEELEEKLEKLENLLE 543
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  743 qgqfETEMLQKKIVNLQKIVEEKVAAALVSQIQlEAVQEYAKFCQDNQTISSEPERTN--IQNLNQL--REDELGSDISA 818
Cdd:COG0419    544 ----ELEELKEKLQLQQLKEELRQLEDRLQELK-ELLEELRLLRTRKEELEELRERLKelKKKLKELeeRLSQLEELLQS 618
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  819 LTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKtttelfhsnE 898
Cdd:COG0419    619 LELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE---------E 689
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  899 ESGFFNELEALRAESVATKAELASYKEKAEKLQEELlvkeTNMTSLQKDLSQVRDHLAEAKEklsILEKEDETEVQESKK 978
Cdd:COG0419    690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRK----AELEELKKELEKLEKALELLEE---LREKLGKAGLRADIL 762
                          650       660
                   ....*....|....*....|....*.
gi 1825597415  979 ACMFEPLPIKLSKSIASQTDGTLKIS 1004
Cdd:COG0419    763 RNLLAQIEAEANEILSKLSLNRYDLR 788
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
199-656 5.83e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.58  E-value: 5.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  199 KAEAGPVEQ-----QLLQETEKLMKEKLEVQCQAEKVRDDL----------QKQVKALEIDVEEQVSRFIELEQEKNTEL 263
Cdd:PRK02224   199 KEEKDLHERlngleSELAELDEEIERYEEQREQARETRDEAdevleeheerREELETLEAEIEDLRETIAETEREREELA 278
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  264 MDLRQQNQALEKQLEKMRKFLDEQAIDR------EHERDVFQQEIQKLEQQLK----VVPRFQPISEHQTREVEQLANHL 333
Cdd:PRK02224   279 EEVRDLRERLEELEEERDDLLAEAGLDDadaeavEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDADDLEERA 358
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  334 KEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFgAVEAKPEL-----SLEVQLQA 408
Cdd:PRK02224   359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE-LREERDELrereaELEATLRT 437
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  409 ERDAIDRKEK---------------------EITNLEEQLEQFREELENKNEEVQQLHMQLEIQK--KESTTRLQELEQE 465
Cdd:PRK02224   438 ARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEER 517
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  466 nklfKDDMEKLgLAIKESdamstqdqhvlfgkfaqIIQEKEVEIDQLNEQVTKL-----QQQLKITTDNKVIEEKNELIR 540
Cdd:PRK02224   518 ----REDLEEL-IAERRE-----------------TIEEKRERAEELRERAAELeaeaeEKREAAAEAEEEAEEAREEVA 575
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  541 DLETQIECLMSDQECVKRNRE--EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSlKHQLdvviAEKLAlEQQVE 618
Cdd:PRK02224   576 ELNSKLAELKERIESLERIRTllAAIADAEDEIERLREKREALAELNDERRERLAEKRER-KREL----EAEFD-EARIE 649
                          490       500       510
                   ....*....|....*....|....*....|....*...
gi 1825597415  619 TANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVE 656
Cdd:PRK02224   650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE 687
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1342-1659 6.11e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.60  E-value: 6.11e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1342 QQKQSQMLEMQVELSSMKDRATELQEQLSSekmvvAELKSELAQTKLELETTLKAQHKHL---------KELEAFRLEVK 1412
Cdd:TIGR02168  175 KETERKLERTRENLDRLEDILNELERQLKS-----LERQAEKAERYKELKAELRELELALlvlrleelrEELEELQEELK 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1413 DKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKF---SLESQKQRNLQLNLLLEQQKQLLNESQ 1489
Cdd:TIGR02168  250 EAEEELEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANeisRLEQQKQILRERLANLERQLEELEAQL 325
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1490 QKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTL----DRERELHAQLQSSdgtgqsrpplpsEDLLKELQK 1565
Cdd:TIGR02168  326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeeleSRLEELEEQLETL------------RSKVAQLEL 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1566 QLEEKHSRIVELlnETEKYKLDSLQTRQQMEK---DRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVY 1642
Cdd:TIGR02168  394 QIASLNNEIERL--EARLERLEDRRERLQQEIeelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
                          330
                   ....*....|....*..
gi 1825597415 1643 KLDLEGQRLQGIMQEFQ 1659
Cdd:TIGR02168  472 EAEQALDAAERELAQLQ 488
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
90-817 6.93e-06

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 51.51  E-value: 6.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   90 QTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLC 169
Cdd:pfam02463  189 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA 268
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  170 ASNRLQELEAEQQQIQEERELlsrQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQV 249
Cdd:pfam02463  269 QVLKENKEEEKEKKLQEEELK---LLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK 345
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  250 SRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVvprfQPISEHQTREVEQL 329
Cdd:pfam02463  346 ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA----QLLLELARQLEDLL 421
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  330 ANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgavEAKPELSLEVQLQAE 409
Cdd:pfam02463  422 KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL----QEQLELLLSRQKLEE 497
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  410 RDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ--LHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMS 487
Cdd:pfam02463  498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  488 TQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKV------IEEKNELIRDLETQIECLMSDQECVKRNRE 561
Cdd:pfam02463  578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvvegILKDTELTKLKESAKAKESGLRKGVSLEEG 657
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  562 EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDvVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQL 641
Cdd:pfam02463  658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE-IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINE 736
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  642 TQELFSLKRERESVEKIQSIPENS--VNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRLLQL 719
Cdd:pfam02463  737 ELKLLKQKIDEEEEEEEKSRLKKEekEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAEL 816
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  720 ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERT 799
Cdd:pfam02463  817 LEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEK 896
                          730
                   ....*....|....*...
gi 1825597415  800 NIQNLNQLREDELGSDIS 817
Cdd:pfam02463  897 EEKKELEEESQKLNLLEE 914
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
271-480 9.82e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 50.49  E-value: 9.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  271 QALEKQLEKMRKFLDEQaidrEHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREveqLANHLKEKTDKCSELLLSKEQL 350
Cdd:COG4942     34 AADDKQLKQIQKEIAAL----EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE---TADDLKKLRKQIADLNARLNAL 106
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  351 QRDIQERNEEIEKL---EFRVRELEQ-ALLVSADTFQK-VEDRKHFGAV-----EAKPELSLE-VQLQAERDAIDRKEKE 419
Cdd:COG4942    107 EVQEREQRRRLAEQlaaLQRSGRNPPpALLVSPEDAQRsVRLAIYYGALnparaERIDALKATlKQLAAVRAEIAAEQAE 186
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415  420 ITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 480
Cdd:COG4942    187 LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
191-375 1.01e-05

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 50.41  E-value: 1.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  191 LSRQKEAMKAEAGPVEQQLLQ---ETEKLMKEKLEVQCQAEKVRDDLqKQVKALEIDVEEQVSRFIELEQEKNTELMDLR 267
Cdd:COG4372     79 IRPQLRALRTELGTAQGEKRAaetEREAARSELQKARQEREAVRQEL-AAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  268 QQNQALEKQLEKM---RKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL 344
Cdd:COG4372    158 EQRRQLEAQAQSLqasQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1825597415  345 LSKEQLQRDIQERNEEIEKLEFRVRELEQAL 375
Cdd:COG4372    238 AQISQKAQQIAARAEQIRERERQLQRLETAQ 268
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
298-625 1.26e-05

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 223571 [Multi-domain]  Cd Length: 557  Bit Score: 50.29  E-value: 1.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  298 FQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKtdkCSELllskEQLQRDIQERNEEIEKLEFRVRELEqallv 377
Cdd:COG0497    131 EHQSLLKPELQRQLLDAFAGLEELAQEAYQEAYQAWKQA---RREL----EDLQEKERERAQRADLLQFQLEELE----- 198
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  378 sadtfqkvedrkhfgavEAKPELSLEVQLQAERDAIDRKEKeitnLEEQLEQFREELENKNEEVQQLHmqleiQKKESTT 457
Cdd:COG0497    199 -----------------ELNLQPGEDEELEEERKRLSNSEK----LAEAIQNALELLSGEDDTVSALS-----LLGRALE 252
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  458 RLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfgkfaqiiQEKEVEIDQLNEQVTKLQQQLKITTDNKV-IEEKN 536
Cdd:COG0497    253 ALEDLSEYDGKLSELAELLEEALYELEEASEELRAYL--------DELEFDPNRLEEVEERLFALKSLARKYGVtIEDLL 324
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  537 ELIRDLETQIECLmsdqecvkRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEE-ADSLKHQLDVVIAEKLALEQ 615
Cdd:COG0497    325 EYLDKIKEELAQL--------DNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKElEKEVTAELKALAMEKARFTV 396
                          330
                   ....*....|
gi 1825597415  616 QVETANEEMT 625
Cdd:COG0497    397 ELKPLEESPT 406
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
214-672 1.48e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 50.22  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  214 EKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLR-QQNQALEKQLEKMRKFLDEQAIDRE 292
Cdd:pfam12128  397 DKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKlRLNQATATPELLLQLENFDERIERA 476
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  293 HE----RDVFQQEIQKLEQQLKvvPRFQPISEHQTREvEQLANHLKEKTDKCSELLLSK-----EQLQRDIQERNEEIEK 363
Cdd:pfam12128  477 REeqeaANAEVERLQSELRQAR--KRRDQASEALRQA-SRRLEERQSALDELELQLFPQagtllHFLRKEAPDWEQSIGK 553
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  364 LefrvreLEQALLVSADTFQKVED------------RKHFGAVEAKPELSLEVQLQAERD----AIDRKEKEITNLEEQL 427
Cdd:pfam12128  554 V------ISPELLHRTDLDPEVWDgsvggelnlygvKLDLKRIDVPEWAASEEELRERLDkaeeALQSAREKQAAAEEQL 627
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  428 EQFREELEN-------------------------KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKE 482
Cdd:pfam12128  628 VQANGELEKasreetfartalknarldlrrlfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE 707
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  483 -----SDAMSTQDQHV---LFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNEL-----IRDLETQIECL 549
Cdd:pfam12128  708 qkreaRTEKQAYWQVVegaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAklkreIRTLERKIERI 787
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  550 MSDQECVKR--------------NREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAE------ 609
Cdd:pfam12128  788 AVRRQEVLRyfdwyqetwlqrrpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENlrglrc 867
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1825597415  610 ------KLALEQQVETANEEMTFMKNVLKEtnfkmnqltqelFSLKRERESvEKIQSIPENSVNVAIDH 672
Cdd:pfam12128  868 emsklaTLKEDANSEQAQGSIGERLAQLED------------LKLKRDYLS-ESVKKYVEHFKNVIADH 923
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
207-456 1.77e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 49.34  E-value: 1.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEID---VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKF 283
Cdd:COG4942     37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEiasLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRR 116
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  284 LDEQ-AIDREHERDVFQQEIQKLEQQLKVVpRFQPISEHQTREVEQLANHLKEktdkcsELLLSKEQLQRDIQERnEEIE 362
Cdd:COG4942    117 LAEQlAALQRSGRNPPPALLVSPEDAQRSV-RLAIYYGALNPARAERIDALKA------TLKQLAAVRAEIAAEQ-AELT 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  363 KLEFRVRELEQALLvsadtfQKVEDRKhfgaveaKPELSLEVQLQAERDAI-------DRKEKEITNLEEQLEQFREELE 435
Cdd:COG4942    189 TLLSEQRAQQAKLA------QLLEERK-------KTLAQLNSELSADQKKLeelraneSRLKNEIASAEAAAAKAREAAA 255
                          250       260
                   ....*....|....*....|.
gi 1825597415  436 NKNEEVQQLHMQLEIQKKEST 456
Cdd:COG4942    256 AAEAAAARARAAEAKRTGETY 276
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1298-1577 2.07e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.07  E-value: 2.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1298 QKADRRSLLSEIQALHAQMNGRKITLKR-EQESEKPSQEL--LEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKM 1374
Cdd:TIGR02169  672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELsdASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1375 VVAELKSELAQTKLELETTLKAQHKHLKELEAF-----RLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLgRS 1449
Cdd:TIGR02169  752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EY 830
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1450 EERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSS 1529
Cdd:TIGR02169  831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1530 TLDRERELHAQLQSSDGTGQSR------------PPLPSEDLLKELQKQLEEKHSRIVEL 1577
Cdd:TIGR02169  911 QIEKKRKRLSELKAKLEALEEElseiedpkgedeEIPEEELSLEDVQAELQRVEEEIRAL 970
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
235-633 3.06e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 49.33  E-value: 3.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  235 QKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQAL---------EKQLEKMRKFLDEQAIDREHERDVFQQEIQKL 305
Cdd:pfam05483  376 EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILaedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEIHDL 455
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  306 EQQLKVVPRFQpisEHQTREVEQLANHLK-------EKTDKCSELLLSKEQL--------------QRDIQERNEEIEKL 364
Cdd:pfam05483  456 EIQLTAIKTSE---EHYLKEVEDLKTELEkeklkniELTAHCDKLLLENKELtqeasdmtlelkkhQEDIINCKKQEERM 532
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  365 EFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ 443
Cdd:pfam05483  533 LKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE 612
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  444 LHMQLEIQKKESTTRLQELeqenKLFKDDMEKLGLAIKESDAmstqdqhvlfgKFAQIIQ--EKEVEIDQLNEQ-VTKLQ 520
Cdd:pfam05483  613 LHQENKALKKKGSAENKQL----NAYEIKVNKLELELASAKQ-----------KFEEIIDnyQKEIEDKKISEEkLLEEV 677
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  521 QQLKITTDNKVIEEKnelirdlETQIECLMSDQECVKRnREEEIEQLNEVIEKLQQELANIGQKTsmnaHSLSEEADSLK 600
Cdd:pfam05483  678 EKAKAIADEAVKLQK-------EIDKRCQHKIAEMVAL-MEKHKHQYDKIIEERDSELGLYKNKE----QEQSSAKAALE 745
                          410       420       430
                   ....*....|....*....|....*....|...
gi 1825597415  601 HQLDVVIAEKLALEQQVETANEEMTFMKNVLKE 633
Cdd:pfam05483  746 IELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
415-1089 3.30e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 49.20  E-value: 3.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  415 RKEKEITNLEE------QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMST 488
Cdd:pfam02463  150 MKPERRLEIEEeaagsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  489 QDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLN 568
Cdd:pfam02463  230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  569 EVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL 648
Cdd:pfam02463  310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  649 KRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQtyfkSFEENGKGSIINLETRLLQLESTVSAKDL 728
Cdd:pfam02463  390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE----ESIELKQGKLTEEKEELEKQELKLLKDEL 465
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  729 ELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKI-----------------VEEKVAAALVSQIQLEAVQEYAKFCQDNQT 791
Cdd:pfam02463  466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERsqkeskarsglkvllalIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  792 ISSEPERTN--IQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNE 869
Cdd:pfam02463  546 STAVIVEVSatADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  870 KKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKET----NMTSLQ 945
Cdd:pfam02463  626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILrrqlEIKKKE 705
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  946 KDLSQVRDHLAEAKEKLSILEKEDETEVQESKKACMFEPLPIKLSKSIASQTDGTLKISSSNQTPQILVKNAGIQINLQS 1025
Cdd:pfam02463  706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 1026 ECSSEEVTEIISQFTEKIEKMQELHAAEILDMESRHISETETLKREHYVAVQLLKEECGTLKAV 1089
Cdd:pfam02463  786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
246-483 4.00e-05

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 48.77  E-value: 4.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  246 EEQVSRFIELEQEKNTE-LMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtR 324
Cdd:PRK05771    27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE-------------E 93
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  325 EVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLE-------------------FRVRE--LEQALLVSADTFQ 383
Cdd:PRK05771    94 ELEKIEKEIKELEEEISEL----ENEIKELEQEIERLEPWGnfdldlslllgfkyvsvfvGTVPEdkLEELKLESDVENV 169
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  384 KVEDRKH-------FGAVEAKPELS--------LEVQLQAER---DAIDRKEKEITNLEEQLEQFREELENKNEEVQQLH 445
Cdd:PRK05771   170 EYISTDKgyvyvvvVVLKELSDEVEeelkklgfERLELEEEGtpsELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1825597415  446 MQ----LEIQKKESTTRLQELEqENKLF-------KDDMEKLGLAIKES 483
Cdd:PRK05771   250 LAlyeyLEIELERAEALSKFLK-TDKTFaiegwvpEDRVKKLKELIDKA 297
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
62-372 5.89e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 5.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   62 KRNGHILKLISKISLPTPPYSLEH--AKVTQTELMRE-----------SFRQKQEATESLKcQEELRERLHEESRA---R 125
Cdd:pfam17380  237 ERRKESFNLAEDVTTMTPEYTVRYngQTMTENEFLNQllhivqhqkavSERQQQEKFEKME-QERLRQEKEEKAREverR 315
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  126 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQEllcasNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV 205
Cdd:pfam17380  316 RKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIAMEISRMRELERLQMERQQK 390
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  206 EQQLLQETEKLMKEKL----------EVQCQAEKVRDDL----QKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQ 271
Cdd:pfam17380  391 NERVRQELEAARKVKIleeerqrkiqQQKVEMEQIRAEQeearQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE 470
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  272 ALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-----LEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS 346
Cdd:pfam17380  471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEErkqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEE 550
                          330       340
                   ....*....|....*....|....*.
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELE 372
Cdd:pfam17380  551 RRRIQEQMRKATEERSRLEAMERERE 576
PTZ00121 PTZ00121
MAEBL; Provisional
1289-1644 6.92e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 6.92e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1289 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQElleynIQQKQSQMLEMQVELSSMKDRATELQEQ 1368
Cdd:PTZ00121  1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE-----AAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1369 LSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAfRLEVKDKTDEVhllnDTLASEQKKSREL-QWALEKEKAKLG 1447
Cdd:PTZ00121  1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK-AAAAKKKADEA----KKKAEEKKKADEAkKKAEEAKKADEA 1449
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1448 RSEERDKEELEDLKFSLESQKQRNL-----QLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQvlLESEKV 1522
Cdd:PTZ00121  1450 KKKAEEAKKAEEAKKKAEEAKKADEakkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA--KKADEA 1527
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1523 RIREMSSTLDRERELHaQLQSSDGTGQSRPPLPSEDLLKELQKQLEEKHS----RIVELLNETEKYKLDSLQTRQQMEKD 1598
Cdd:PTZ00121  1528 KKAEEAKKADEAKKAE-EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKnmalRKAEEAKKAEEARIEEVMKLYEEEKK 1606
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1825597415 1599 RQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVYKL 1644
Cdd:PTZ00121  1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
PRK12704 PRK12704
phosphodiesterase; Provisional
347-468 9.19e-05

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 47.47  E-value: 9.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKpelslEVQLQAERDAIDRKEKEITNLEEQ 426
Cdd:PRK12704    70 RNEFEKELRERRNELQKLEKRLLQKEENL------------DRKLELLEKR-----EEELEKKEKELEQKQQELEKKEEE 132
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1825597415  427 LEQFREELENKNEEVQQL------HMQLEIQKKESTT----RLQELEQENKL 468
Cdd:PRK12704   133 LEELIEEQLQELERISGLtaeeakEILLEKVEEEARHeaavLIKEIEEEAKE 184
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
145-819 9.22e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 47.76  E-value: 9.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  145 EKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAM--------KAEAGPVEQQL------L 210
Cdd:TIGR02169  231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIaslersI 310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  211 QETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELE---QEKNTELMDLRQQNQALEKQLEKMRkflDEQ 287
Cdd:TIGR02169  311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTeeyAELKEELEDLRAELEEVDKEFAETR---DEL 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  288 AiDREHERDVFQQEIQKLEQQLKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFR 367
Cdd:TIGR02169  388 K-DYREKLEKLKREINELKRELD---RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  368 VRELEQALLVSADTFQKVEDRKHfgavEAKPELSlevQLQAERDAIDRKEKEITNLEE--------------QLEQFREE 433
Cdd:TIGR02169  464 LSKYEQELYDLKEEYDRVEKELS----KLQRELA---EAEAQARASEERVRGGRAVEEvlkasiqgvhgtvaQLGSVGER 536
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  434 ------------LEN---KNEEVQQLHMQ------------LEIQKKESTTRLQELEQEN-----------------KLF 469
Cdd:TIGR02169  537 yataievaagnrLNNvvvEDDAVAKEAIEllkrrkagratfLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyePAF 616
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  470 K---------DDMEkLGLAIKESDAMSTQDQHVL-----------FGKFAQIIQEKE-VEIDQLNEQVTKLQQQL----- 523
Cdd:TIGR02169  617 KyvfgdtlvvEDIE-AARRLMGKYRMVTLEGELFeksgamtggsrAPRGGILFSRSEpAELQRLRERLEGLKRELsslqs 695
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  524 KITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE---EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSE-EADSL 599
Cdd:TIGR02169  696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEklkERLEELEEDLSSLEQEIENVKSELKELEARIEElEEDLH 775
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  600 KHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKiqsipensvnvAIDHLskdkpE 679
Cdd:TIGR02169  776 KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK-----------EIQEL-----Q 839
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  680 LEVVLTEDALKSLENQtyfksfEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGqfetEMLQKKIVNLQ 759
Cdd:TIGR02169  840 EQRIDLKEQIKSIEKE------IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL----RELERKIEELE 909
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415  760 KIVEEKVAAALVSQIQLEAVQEYAKFCQDN-QTISSEPERTNIQNLNQLREDELGSDISAL 819
Cdd:TIGR02169  910 AQIEKKRKRLSELKAKLEALEEELSEIEDPkGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1428-1660 9.40e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.43  E-value: 9.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1428 EQKKSRELQWALEKEKAKLGRSEERDKE-----ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQ 1502
Cdd:pfam17380  305 KEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQ 384
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1503 LSEEQGRNLELQVLLESEKVRIREMsstlDRERELHAQLQSSDGTGQSRpplpsEDLLKELQKQLEEKHSRivellnETE 1582
Cdd:pfam17380  385 MERQQKNERVRQELEAARKVKILEE----ERQRKIQQQKVEMEQIRAEQ-----EEARQREVRRLEEERAR------EME 449
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1583 KYKLDSLQTRQQMEKDRQ--VHRKTLQTEQEANTEGQKKMHELQSKVedLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQK 1660
Cdd:pfam17380  450 RVRLEEQERQQQVERLRQqeEERKRKKLELEKEKRDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKLLEKEMEERQK 527
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
142-874 1.12e-04

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 47.66  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  142 YADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGpvEQQLLQETEKLMKEKL 221
Cdd:pfam02463  228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELK--LLAKEEEELKSELLKL 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  222 EVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQN----QALEKQLEKMRKFLDEQAIDREHERDV 297
Cdd:pfam02463  306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEeeeeEELEKLQEKLEQLEEELLAKKKLESER 385
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  298 FQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLV 377
Cdd:pfam02463  386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  378 SADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ--LHMQLEIQKKES 455
Cdd:pfam02463  466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAI 545
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  456 TTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKV---- 531
Cdd:pfam02463  546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvv 625
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  532 --IEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVvIAE 609
Cdd:pfam02463  626 egILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEI-KKK 704
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  610 KLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENS------------------------ 665
Cdd:pfam02463  705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEekeeekselslkekelaeerekte 784
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  666 VNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEE--NGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDM--Q 741
Cdd:pfam02463  785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLliEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEeiT 864
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  742 EQGQFETEMLQKKIVNLQKIVEEK-VAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTN--IQNLNQLREDELGSDISA 818
Cdd:pfam02463  865 KEELLQELLLKEEELEEQKLKDELeSKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKeeAEILLKYEEEPEELLLEE 944
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415  819 LTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQRE 874
Cdd:pfam02463  945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
219-469 1.15e-04

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 47.36  E-value: 1.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  219 EKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNT---ELMDLRQQNQALEKQLEKMRKFLDEQAiDREHER 295
Cdd:COG1269     47 EKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKleaELKSLEEVIKPAEKFSSEVEELTRKLE-ERLSEL 125
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  296 DVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLlskeqlqrdiqERNEEIEKLEFRVRELEQAL 375
Cdd:COG1269    126 DEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALV-----------GVIEDEVALYGENVEASVVI 194
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  376 LVSADtfqkvedRKHFGAV-EAKPELSLEVQLQAERD-----AIDRKEKEITNLEEQLEQFREELENKNEEVQ----QLH 445
Cdd:COG1269    195 VVAHG-------AEDLDKVsKILNELGFELYEVPEFDggpseLISELEEVIAEIQDELESLRSELEALAEKIAeellAVR 267
                          250       260
                   ....*....|....*....|....
gi 1825597415  446 MQLEIQKKESTTRLQeLEQENKLF 469
Cdd:COG1269    268 EILEIEKALGDVLSK-LARTEYTL 290
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
91-578 2.00e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.57  E-value: 2.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   91 TELMRESFRQKQEATEslkcqeelreRLHEESRAREQLAVELSKAEGVID-GYADEKTLfERQIQEKTDIIDRLEQELLC 169
Cdd:PRK02224   264 RETIAETEREREELAE----------EVRDLRERLEELEEERDDLLAEAGlDDADAEAV-EARREELEDRDEELRDRLEE 332
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  170 ASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQlLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQV 249
Cdd:PRK02224   333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE-LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  250 SRFIELEQEKN---TELMDLRQQNQALEKQLEKMRKFLDE-------QAI----------DREHERDVFQQEIQKLEQQL 309
Cdd:PRK02224   412 DFLEELREERDelrEREAELEATLRTARERVEEAEALLEAgkcpecgQPVegsphvetieEDRERVEELEAELEDLEEEV 491
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  310 KVVPRFQPISEhQTREVEQLANHLKEKTDKCSELLLSKEQlqrDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRK 389
Cdd:PRK02224   492 EEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRE---TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  390 HFGAVEAKpelSLEVQLQAERDAIDRKEK------EITNLEEQLEQFREELENKNEEVQQLHMQLeiqkKESTTRLQELE 463
Cdd:PRK02224   568 EEAREEVA---ELNSKLAELKERIESLERirtllaAIADAEDEIERLREKREALAELNDERRERL----AEKRERKRELE 640
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  464 QEnklFKDDmeklglAIKESDAMSTQdqhvlfgkFAQIIQEKEVEIDQLNEQVTKLQQQlkITTDNKVIEEKNELiRDLE 543
Cdd:PRK02224   641 AE---FDEA------RIEEAREDKER--------AEEYLEQVEEKLDELREERDDLQAE--IGAVENELEELEEL-RERR 700
                          490       500       510
                   ....*....|....*....|....*....|....*
gi 1825597415  544 TQIECLMSDQECVKrnreEEIEQLNEVIEKLQQEL 578
Cdd:PRK02224   701 EALENRVEALEALY----DEAEELESMYGDLRAEL 731
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1402-1661 2.37e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 46.60  E-value: 2.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1402 KELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKfslesqkqrnlqlnllleqq 1481
Cdd:TIGR02169  688 RELSSLQSELRRIENRLDELSQELSDASRKIGEI----EKEIEQLEQEEEKLKERLEELE-------------------- 743
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1482 kqllnESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERelhaqlqssdgtgqsrpplpSEDLLK 1561
Cdd:TIGR02169  744 -----EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--------------------IPEIQA 798
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1562 ELQKqLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQV 1641
Cdd:TIGR02169  799 ELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
                          250       260
                   ....*....|....*....|
gi 1825597415 1642 YKLDLEGQRLQGIMQEFQKQ 1661
Cdd:TIGR02169  878 RDLESRLGDLKKERDELEAQ 897
mukB PRK04863
chromosome partition protein MukB;
240-525 2.47e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 46.49  E-value: 2.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  240 ALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREH--ERDVFQQEIQKLEQQLKvvprf 315
Cdd:PRK04863   830 AFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSalNRLLPRLNllADETLADRVEEIREQLD----- 904
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  316 qpisehqtrEVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLEFRVRELEQAL-LVSADTF---QKVEDRKHF 391
Cdd:PRK04863   905 ---------EAEEAKRFVQQHGNALAQL----EPIVSVLQSDPEQFEQLKQDYQQAQQTQrDAKQQAFaltEVVQRRAHF 971
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  392 GAVEAKPELSLEVQLQaerDAIDRKEKEitnLEEQLEQFREELENKNEEVQQLHmQLEIQKKESTTRLQELEQEnklFKD 471
Cdd:PRK04863   972 SYEDAAEMLAKNSDLN---EKLRQRLEQ---AEQERTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQE---LKQ 1041
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415  472 DMEKLGLAI---KESDAMSTQDQ-----HVLFGKFAQI---IQEKEVEIDQLNEQVTKLQQQLKI 525
Cdd:PRK04863  1042 ELQDLGVPAdsgAEERARARRDElharlSANRSRRNQLekqLTFCEAEMDNLTKKLRKLERDYHE 1106
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1337-1640 2.58e-04

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 46.31  E-value: 2.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1337 LEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLELETTLkaqhkhlkeleafrLEVKDKTD 1416
Cdd:pfam01576  192 LEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAKKEEELQAAL--------------ARLEEETA 257
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1417 EVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDK---EELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIE 1493
Cdd:pfam01576  258 QKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALE 337
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1494 SQRMLYDAQLSEEQGRNL----ELQVLLESE---KVRIREMSSTLDRER-ELHAQLQSSDGTGQSrpplpSEDLLKELQK 1565
Cdd:pfam01576  338 EETRSHEAQLQEMRQKHTqaleELTEQLEQAkrnKASLEKAKQALESENaELQAELRSLQQAKQD-----SEHKRKKLEG 412
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 1566 QLEEKHSRivelLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQ 1640
Cdd:pfam01576  413 QLQELQSR----LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQ 483
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
232-523 3.42e-04

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 45.74  E-value: 3.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  232 DDLQKQVKALE--IDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLE-KMRKF------LDEQAIDREHERDVFQQEI 302
Cdd:COG5185    274 ANLKTQNDNLYekIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKqKSQEWpgklekLKSEIELKEEEIKALQSNI 353
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  303 QKLEQQLkvvpRFQPIS----EHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVS 378
Cdd:COG5185    354 DELHKQL----RKQGISteqfELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRS 429
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  379 ADtfQKVEDRKHFgAVEAKPELSLEVQLQAE----------RDAIDRKEKEITNLEEQLEQFREELEN----KNEEVQQL 444
Cdd:COG5185    430 RS--QIGHNVNDS-SLKINIEQLFPKGSGINesikksilelNDEIQERIKTEENKSITLEEDIKNLKHdineLTQILEKL 506
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  445 HMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMStqdqHVLFGKFAQIIQEKEVEIDQ----LNEQVTKLQ 520
Cdd:COG5185    507 ELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLS----KTSILDAEQLVQSTEIKLDElkvdLNRKRYKIH 582

                   ...
gi 1825597415  521 QQL 523
Cdd:COG5185    583 KQV 585
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
404-609 3.45e-04

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 44.28  E-value: 3.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  404 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLglaikes 483
Cdd:COG1579     10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL------- 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  484 DAMSTQDQHVLFGKFAQIIQEKEV----EIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIECLMSDQecvkrn 559
Cdd:COG1579     83 SAVKDERELRALNIEIQIAKERINsledELAELMEEIEKLEKE---------IEDLKERLERLEKNLAEAEARL------ 147
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1825597415  560 rEEEIEQLNEVIEKLQQELANIgqKTSMNAHSLSEEADSLKHQLDVVIAE 609
Cdd:COG1579    148 -EEEVAEIREEGQELSSKREEL--KEKLDPELLSEYERIRKNKKGVGVVP 194
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1376-1681 4.44e-04

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 45.48  E-value: 4.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1376 VAELKSELAQTKLELETTLKaqhkHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQwalEKEKAKLGRSEERDKE 1455
Cdd:COG1196    167 VSKYKERKEEAERKLERTEE----NLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR---ELELALLLAKLKELRK 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1456 ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAqLSEEQGRNLELQVLLESEKVRIREMSSTLDRER 1535
Cdd:COG1196    240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE-LQEELLELKEEIEELEGEISLLRERLEELENEL 318
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1536 ELHAQLQSSDgtgqsrpplpsEDLLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTE 1615
Cdd:COG1196    319 EELEERLEEL-----------KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415 1616 GQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQELEREEKRESRRILYQNLNE 1681
Cdd:COG1196    388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEE 453
46 PHA02562
endonuclease subunit; Provisional
354-584 4.55e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 45.01  E-value: 4.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  354 IQERNEEIEKLEFRVRELEQALlvsaDTFQKVEDRkhfgaveakpelslevQLQAERDAIDRKEKEITNLEEQLEQFREE 433
Cdd:PHA02562   176 IRELNQQIQTLDMKIDHIQQQI----KTYNKNIEE----------------QRKKNGENIARKQNKYDELVEEAKTIKAE 235
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  434 LENKNEEVQQLHMQLEiqkkESTTRLQELEQENKLFKDDMEKLGLAIK-----------------ESDAMS--TQDQHVL 494
Cdd:PHA02562   236 IEELTDELLNLVMDIE----DPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctqqiseGPDRITkiKDKLKEL 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  495 FGKFAQI---IQEKEVEIDQLNEQVTKLQQ-QLKITTDNKVIEEKNELIRDLETQIECLMSDqecvKRNREEEIEQLNEV 570
Cdd:PHA02562   312 QHSLEKLdtaIDELEEIMDEFNEQSKKLLElKNKISTNKQSLITLVDKAKKVKAAIEELQAE----FVDNAEELAKLQDE 387
                          250
                   ....*....|....
gi 1825597415  571 IEKLQQELANIGQK 584
Cdd:PHA02562   388 LDKIVKTKSELVKE 401
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
207-848 4.60e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 45.48  E-value: 4.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFL-- 284
Cdd:pfam15921  116 QTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILvd 195
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  285 -DEQAIDREHERDVF-----------------------------------QQEIQKLEQQLKVVPRFQpisEHQTREVEQ 328
Cdd:pfam15921  196 fEEASGKKIYEHDSMstihfrslgsaiskilreldteisylkgrifpvedQLEALKSESQNKIELLLQ---QHQDRIEQL 272
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  329 LANHLKE---KTDKCSELLLSKEQLQRDI-----QERNE------EIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAV 394
Cdd:pfam15921  273 ISEHEVEitgLTEKASSARSQANSIQSQLeiiqeQARNQnsmymrQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  395 EAKPELS---------------LEVQLQAERDAIDRKEKEITNLEEQ--------------LEQFREELENKNEEVQQLH 445
Cdd:pfam15921  353 LANSELTearterdqfsqesgnLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLE 432
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  446 MQLEIQKKESTTRLQE-----------LEQENKL---FKDDMEKLGLAIKESDA--MSTQDQHVLFGKFAQIIQEKEVEI 509
Cdd:pfam15921  433 ALLKAMKSECQGQMERqmaaiqgknesLEKVSSLtaqLESTKEMLRKVVEELTAkkMTLESSERTVSDLTASLQEKERAI 512
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  510 DQLNEQVTKLQQQLKITTDN-KVIEEKNELIRDLETQIECLmsdqecvkrnrEEEIEQLNEVIEKLQQELANIGQKTSMN 588
Cdd:pfam15921  513 EATNAEITKLRSRVDLKLQElQHLKNEGDHLRNVQTECEAL-----------KLQMAEKDKVIEILRQQIENMTQLVGQH 581
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  589 AHSLSeeadslkhqldVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLkrERESVEKIQSIPENSVNV 668
Cdd:pfam15921  582 GRTAG-----------AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL--ELEKVKLVNAGSERLRAV 648
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  669 AIDHLSKDKPELEVVLTEDALKSLENQtyFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFET 748
Cdd:pfam15921  649 KDIKQERDQLLNEVKTSRNELNSLSED--YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAM 726
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  749 emlqKKIVNLQKIVEEKVAaalvsqiQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLRED---------ELGSDISAL 819
Cdd:pfam15921  727 ----KVAMGMQKQITAKRG-------QIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQElstvateknKMAGELEVL 795
                          730       740
                   ....*....|....*....|....*....
gi 1825597415  820 TLRISELESQVVEMHTSliLEKEQVEIAE 848
Cdd:pfam15921  796 RSQERRLKEKVANMEVA--LDKASLQFAE 822
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
243-546 4.75e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.11  E-value: 4.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  243 IDVEEQVSRFIELEQEKntelmdLRQQNQALEKQLEKMRKfLDEQAIDREHERDvfQQEIQKLEQQLKVVPRFQPIS--- 319
Cdd:pfam17380  284 VSERQQQEKFEKMEQER------LRQEKEEKAREVERRRK-LEEAEKARQAEMD--RQAAIYAEQERMAMERERELErir 354
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  320 -EHQTREVEQL-ANHLKEKTDKCSELllskEQLQRDIQERNEEI-EKLEF-RVRELEQALLVSADTFQKVEDRKHFGAVE 395
Cdd:pfam17380  355 qEERKRELERIrQEEIAMEISRMREL----ERLQMERQQKNERVrQELEAaRKVKILEEERQRKIQQQKVEMEQIRAEQE 430
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  396 AKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEK 475
Cdd:pfam17380  431 EARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415  476 LGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQI 546
Cdd:pfam17380  511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQI 581
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
402-579 5.22e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 45.02  E-value: 5.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  402 LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIK 481
Cdd:COG4372     79 IRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  482 ESDAMSTQDQHVLFGKfaqiiQEKEVEIDQLNEQVTKLQ-QQLKITTDNKVIEEKNELIRDLETQieclMSDQECVKRNR 560
Cdd:COG4372    159 QRRQLEAQAQSLQASQ-----KQLQASATQLKSQVLDLKlRSAQIEQEAQNLATRANAAQARTEE----LARRAAAAQQT 229
                          170
                   ....*....|....*....
gi 1825597415  561 EEEIEQLNEVIEKLQQELA 579
Cdd:COG4372    230 AQAIQQRDAQISQKAQQIA 248
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1323-1658 5.44e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.05  E-value: 5.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1323 LKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQE---------QLSSEKMVVAELKSELAQTKLELETT 1393
Cdd:PRK03918   243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEE 322
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1394 LKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQ 1473
Cdd:PRK03918   323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1474 LNLLLEQQKQLLNESQQKIESQRM-------------LYDAQLSEEQGRNLELQVLLESEKVRiREMSSTLDRERELHAQ 1540
Cdd:PRK03918   403 IEEEISKITARIGELKKEIKELKKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRIE-KELKEIEEKERKLRKE 481
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1541 LQSSDGTGQSRPPLPSEDLLKELQKQLEEKHSRIV--ELLNETEKY-----KLDSLQTRQQMEKDRQVHRKTLQTEQEan 1613
Cdd:PRK03918   482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKSLKKELEKLEELKKKLA-- 559
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1825597415 1614 tEGQKKMHELQSKVEDLQRQLEEKR-QQVYKLDLEGQRLQGIMQEF 1658
Cdd:PRK03918   560 -ELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEY 604
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
207-465 5.45e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 45.26  E-value: 5.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  207 QQLLQETEKLMKEKLEVQCQAEKvrDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDE 286
Cdd:COG3096    812 QRLHQAFSRFIGSHLAVAFEADP--EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADE 889
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  287 QAIDREHErdvFQQEIQKLEQQLKVVPRFQpiseHQTREVEQLANHLKEKTDKCSELllsKEQLQRDIQerneeieklef 366
Cdd:COG3096    890 SLADRVEE---IRERLDEAQEAARFIQQHG----NTLSKLEPIASVLQSDPEQFEQL---KEDYAQAQQ----------- 948
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  367 RVRELEQALLVSADTFQKvedRKHFGAVEAKPELSLEVQLQAE-RDAIDRKEKEITNLEEQLEQFREELENKNeevqQLH 445
Cdd:COG3096    949 MQRQARQQAFALTEVVQR---RAHFSYSDSAEMLSENSDLNEKlRQRLEQAEAERTRAREQLRQHQAQLSQYN----QVL 1021
                          250       260
                   ....*....|....*....|
gi 1825597415  446 MQLEIQKKESTTRLQELEQE 465
Cdd:COG3096   1022 ASLKSSYDTKKELLNELQQE 1041
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
153-933 5.90e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 5.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  153 IQEKTDIIDRLEQELLCASN----RLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcQAE 228
Cdd:TIGR02169  193 IDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLE-EIE 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  229 KVRDDLQKQVKALEID-----------VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR---KFLDEQAIDREHE 294
Cdd:TIGR02169  272 QLLEELNKKIKDLGEEeqlrvkekigeLEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLaeiEELEREIEEERKR 351
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  295 RDVFQQEIQKLEQQLKVVprfqpisehqTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQA 374
Cdd:TIGR02169  352 RDKLTEEYAELKEELEDL----------RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  375 LlvsADTFQKVEDRKhfgavEAKPELslEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLH-----MQLE 449
Cdd:TIGR02169  422 L---ADLNAAIAGIE-----AKINEL--EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEkelskLQRE 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  450 IQKKEstTRLQELEQENKLFKDDMEKLGLAIKEsdamstqdqhvLFGKFAQIIQEKE------------------VEIDQ 511
Cdd:TIGR02169  492 LAEAE--AQARASEERVRGGRAVEEVLKASIQG-----------VHGTVAQLGSVGEryataievaagnrlnnvvVEDDA 558
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  512 LNEQVTKLQQQLK----------------------------------ITTDNK------------VIEEKNELIRDLETQ 545
Cdd:TIGR02169  559 VAKEAIELLKRRKagratflplnkmrderrdlsilsedgvigfavdlVEFDPKyepafkyvfgdtLVVEDIEAARRLMGK 638
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  546 IECLMSDQE-------------------CVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVV 606
Cdd:TIGR02169  639 YRMVTLEGElfeksgamtggsraprggiLFSRSEPAELQRLRERLEGLKRELSSLQSELR----RIENRLDELSQELSDA 714
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  607 IAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKREresvekiqsipensvnvaIDHLSKDKPELEVVLT- 685
Cdd:TIGR02169  715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE------------------LKELEARIEELEEDLHk 776
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  686 -EDALKSLEnQTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELtqcykqikdmqEQGQFETEMLQKKIVNLQKIVEE 764
Cdd:TIGR02169  777 lEEALNDLE-ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL-----------NRLTLEKEYLEKEIQELQEQRID 844
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  765 kvaaalvSQIQLEAVQEYakfcQDNQTISSEPERTNIQNLnQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQV 844
Cdd:TIGR02169  845 -------LKEQIKSIEKE----IENLNGKKEELEEELEEL-EAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  845 EIAEKNVLEKEKKLLELQKLLEgnEKKQREKEKKRSPQDVEVLKTTTELFHSNEEsgffnELEALraESVATKAE----- 919
Cdd:TIGR02169  913 EKKRKRLSELKAKLEALEEELS--EIEDPKGEDEEIPEEELSLEDVQAELQRVEE-----EIRAL--EPVNMLAIqeyee 983
                          890
                   ....*....|....*...
gi 1825597415  920 ----LASYKEKAEKLQEE 933
Cdd:TIGR02169  984 vlkrLDELKEKRAKLEEE 1001
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
151-771 7.22e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.96  E-value: 7.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  151 RQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELL--SRQKEAMKAEAGPVEQ---------QLLQETEKLMKE 219
Cdd:TIGR00618  246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInrARKAAPLAAHIKAVTQieqqaqrihTELQSKMRSRAK 325
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  220 KLEVQCQAEKVRDDLQKQVKAL----------EIDVEEQVSRFIELEQEKNTE--LMDLRQQNQALEKQLEKMRKFLDEq 287
Cdd:TIGR00618  326 LLMKRAAHVKQQSSIEEQRRLLqtlhsqeihiRDAHEVATSIREISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDI- 404
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  288 aIDREHERDVFQQEIQKLEQQLKVVPRFQpiSEHQTREVEQLANHLKEKTdkcSELLLSKEQLQRDIQERNEEIEKLefr 367
Cdd:TIGR00618  405 -LQREQATIDTRTSAFRDLQGQLAHAKKQ--QELQQRYAELCAAAITCTA---QCEKLEKIHLQESAQSLKEREQQL--- 475
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  368 vRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAID-----------------RKEKEITNLEEQLEQF 430
Cdd:TIGR00618  476 -QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpgpltrrmqrgeqtyaQLETSEEDVYHQLTSE 554
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  431 RE---ELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLG------------LAIKESDAMSTQDQHVLF 495
Cdd:TIGR00618  555 RKqraSLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSeaedmlaceqhaLLRKLQPEQDLQDVRLHL 634
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  496 GKFAQIIQEKEVEIDQLNEQVTKLQQQ---LKITTDNKVIEEKNELIRD-LETQIECLMSDQECVK------RNREEEIE 565
Cdd:TIGR00618  635 QQCSQELALKLTALHALQLTLTQERVRehaLSIRVLPKELLASRQLALQkMQSEKEQLTYWKEMLAqcqtllRELETHIE 714
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  566 QLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEkLALEQQVETANEEMTFMknvlkeTNFKMNQLTQEL 645
Cdd:TIGR00618  715 EYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKA-RTEAHFNNNEEVTAALQ------TGAELSHLAAEI 787
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  646 FSLKRERESVEKIQSIPENSVNVAIDHlskdkpELEVVLTEDALKSLENQTYFKSFEENGKgSIINLETRLLQLESTVSA 725
Cdd:TIGR00618  788 QFFNRLREEDTHLLKTLEAEIGQEIPS------DEDILNLQCETLVQEEEQFLSRLEEKSA-TLGEITHQLLKYEECSKQ 860
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*.
gi 1825597415  726 KDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALV 771
Cdd:TIGR00618  861 LAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANV 906
PRK12704 PRK12704
phosphodiesterase; Provisional
394-464 1.25e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 43.61  E-value: 1.25e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415  394 VEAKPELsLEVQLQAERDaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQ 464
Cdd:PRK12704    60 LEAKEEI-HKLRNEFEKE-LRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
348-577 1.35e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 43.08  E-value: 1.35e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   348 EQLQRDIQERNEEIEKLEFRVRELEQALLV---SADTFQKVEDRKHFGAVEAKPELslevqlQAERDAIDRKEKEITNLE 424
Cdd:smart00787   73 KELKKYISEGRDLFKEIEEETLINNPPLFKeyfSASPDVKLLMDKQFQLVKTFARL------EAKKMWYEWRMKLLEGLK 146
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   425 EQLEQFREELENKNEEVQQ-------LHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKEsdAMSTQDQHvlfgk 497
Cdd:smart00787  147 EGLDENLEGLKEDYKLLMKelellnsIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE--KLKKLLQE----- 219
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   498 faqiIQEKEVEIDQLNEQVTKLQQqlkittdnkVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQE 577
Cdd:smart00787  220 ----IMIKVKKLEELEEELQELES---------KIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
PTZ00121 PTZ00121
MAEBL; Provisional
315-978 1.57e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  315 FQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEfRVRELEQAllvsadtfQKVEDRKHfgAV 394
Cdd:PTZ00121  1081 FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDA--------RKAEEARK--AE 1149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  395 EAKPELSLEVQLQAERDAIDRKEKEITNLEEQLeqfREELENKNEEVQQLHmqlEIQKKESTTRLQELEQENKLFKDDME 474
Cdd:PTZ00121  1150 DAKRVEIARKAEDARKAEEARKAEDAKKAEAAR---KAEEVRKAEELRKAE---DARKAEAARKAEEERKAEEARKAEDA 1223
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  475 KLGLAIKESDAMSTQDQhvlfgkfaqiiQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLET--QIECLMSD 552
Cdd:PTZ00121  1224 KKAEAVKKAEEAKKDAE-----------EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADElkKAEEKKKA 1292
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  553 QECVKRNREEEIEQLNEVIE--KLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNV 630
Cdd:PTZ00121  1293 DEAKKAEEKKKADEAKKKAEeaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  631 LKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPEL------EVVLTEDALKSLENQtyfKSFEEN 704
Cdd:PTZ00121  1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEakkkaeEKKKADEAKKKAEEA---KKADEA 1449
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  705 GKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQfETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAK 784
Cdd:PTZ00121  1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  785 FCQDNQTISSEPERTNIQNLNQLREDE---------------LGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEK 849
Cdd:PTZ00121  1529 KAEEAKKADEAKKAEEKKKADELKKAEelkkaeekkkaeeakKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  850 NVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEK 929
Cdd:PTZ00121  1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1825597415  930 LQEELLVKETNMtslQKDLSQVRDHLAEAKEKLSILEKEDE---TEVQESKK 978
Cdd:PTZ00121  1689 KAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEenkIKAEEAKK 1737
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
86-476 1.63e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.51  E-value: 1.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   86 AKVTQTELMRESFRQKQEATES----LKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIID 161
Cdd:PRK03918   259 EKIRELEERIEELKKEIEELEEkvkeLKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  162 RLEQ--ELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVE-QQLLQETEKLMKEKLEVQCQAEKVRD---DLQ 235
Cdd:PRK03918   339 RLEElkKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITArigELK 418
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  236 KQVKALEIDVEEQVS---------RFIELEQEKN------TELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQ 300
Cdd:PRK03918   419 KEIKELKKAIEELKKakgkcpvcgRELTEEHRKElleeytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  301 -----EIQKLEQQLKVVpRFQPISEHQT--REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQ 373
Cdd:PRK03918   499 kelaeQLKELEEKLKKY-NLEELEKKAEeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  374 ALL-VSADTFQKVEDR---------KHFGAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKN---- 438
Cdd:PRK03918   578 ELEeLGFESVEELEERlkelepfynEYLELKDAEKELeREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkys 657
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 1825597415  439 ----EEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL 476
Cdd:PRK03918   658 eeeyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
270-587 1.76e-03

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 43.43  E-value: 1.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  270 NQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQ 349
Cdd:COG5185    206 IIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYE 285
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  350 LQRDIQERNEEIEKLEFRVRELEQAL--LVSADTFQKVEDRKHFGAVEAKPE--LSLEVQLQAERDAIDRKEKEITNLEE 425
Cdd:COG5185    286 KIQEAMKISQKIKTLREKWRALKSDSnkYENYVNAMKQKSQEWPGKLEKLKSeiELKEEEIKALQSNIDELHKQLRKQGI 365
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  426 QLEQFRE----------ELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKE-----SDAMSTQD 490
Cdd:COG5185    366 STEQFELmnqerekltrELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQighnvNDSSLKIN 445
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  491 QHVLFGKFAQIIQEKEVEIDQLNEQVT---------KLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE 561
Cdd:COG5185    446 IEQLFPKGSGINESIKKSILELNDEIQerikteenkSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENE 525
                          330       340
                   ....*....|....*....|....*...
gi 1825597415  562 EEIEQLNEVIEKLQQEL--ANIGQKTSM 587
Cdd:COG5185    526 RELVAQRIEIEKLEKELndLNLLSKTSI 553
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1279-1440 1.95e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 42.95  E-value: 1.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1279 LEQRIQEQGVEYQAAMECLQKADRRSllSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSM 1358
Cdd:pfam07888   78 LESRVAELKEELRQSREKVEELEEKY--KELSRSGEELAEEKDALLAQRAESEARIRELEEDIKTLTQRVLERETELERM 155
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1359 KDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWA 1438
Cdd:pfam07888  156 KERVKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEAL 235

                   ..
gi 1825597415 1439 LE 1440
Cdd:pfam07888  236 LE 237
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
313-619 1.99e-03

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 42.92  E-value: 1.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  313 PRFQPISEHQTREVEQLANHLKEKTDKCSELllskeQLQRDIQERNEEIEKLEFRVRELEQAL--LVSADTfqkvEDRKH 390
Cdd:pfam06160   52 KKWDDIVTKSLPDIEELLFEAEELNDKYRFK-----KAKKALDEIEELLDDIEEDIKQILEELdeLLESEE----KNREE 122
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  391 FGAVEAKPElSLEVQLQAER----DAIDRKEKEITNLEEQLEQFREELENKN-----EEVQQLHMQ---LEIQKKESTTR 458
Cdd:pfam06160  123 VEELKDKYR-ELRKTLLANRfsygPAIDELEKQLAEIEEEFSQFEELTESGDylearEVLEKLEEEtdaLEELMEDIPPL 201
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  459 LQELEQEnklFKDDMEKLGLAIKEsdaMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQqqlkittdnkvIEEKNEL 538
Cdd:pfam06160  202 YEELKTE---LPDQLEELKEGYRE---MEEEGYALEHLNVDKEIQQLEEQLEENLALLENLE-----------LDEAEEA 264
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  539 IRDLETQIECLMSD--------QECVKRNRE--EEIEQLNEVIEKLQQELANIGQKTSMNAHSLsEEADSLKHQLDVVIA 608
Cdd:pfam06160  265 LEEIEERIDQLYDLlekevdakKYVEKNLPEieDYLEHAEEQNKELKEELERVQQSYTLNENEL-ERVRGLEKQLEELEK 343
                          330
                   ....*....|.
gi 1825597415  609 EKLALEQQVET 619
Cdd:pfam06160  344 RYDEIVERLEE 354
PTZ00440 PTZ00440
reticulocyte binding protein 2-like protein; Provisional
207-581 2.21e-03

reticulocyte binding protein 2-like protein; Provisional


Pssm-ID: 240419 [Multi-domain]  Cd Length: 2722  Bit Score: 43.28  E-value: 2.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKalEIDVEEQVSRFIELEQEKNTELMD---LRQQNQALEKQLEKMRKF 283
Cdd:PTZ00440   594 DNIIQQIEELINEALFNKEKFINEKNDLQEKVK--YILNKFYKGDLQELLDELSHFLDDhkyLYHEAKSKEDLQTLLNTS 671
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  284 LDEQAIDREHERDVFQQEIQKLEQQLkvvprfQPISEHQTREVEQLANHLKEKTDKCSELLLSK-EQLQRDIQERNEEIE 362
Cdd:PTZ00440   672 KNEYEKLEFMKSDNIDNIIKNLKKEL------QNLLSLKENIIKKQLNNIEQDISNSLNQYTIKyNDLKSSIEEYKEEEE 745
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  363 KLEFRVRELEQALlvsaDTFQKVEDRKHFGAVEAKpelSLEVQLQAERDAIDRKEKEITNleeQLEQFREELENKNEEVQ 442
Cdd:PTZ00440   746 KLEVYKHQIINRK----NEFILHLYENDKDLPDGK---NTYEEFLQYKDTILNKENKISN---DINILKENKKNNQDLLN 815
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  443 QLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDqhvlfgKFAQIIQEKEVEIDQLNeQVTKLQQQ 522
Cdd:PTZ00440   816 SYNILIQKLEAHTEKNDEELKQLLQKFPTEDENLNLKELEKEFNENNQ------IVDNIIKDIENMNKNIN-IIKTLNIA 888
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415  523 LKITTDNK-----VIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANI 581
Cdd:PTZ00440   889 INRSNSNKqlvehLLNNKIDLKNKLEQHMKIINTDNIIQKNEKLNLLNNLNKEKEKIEKQLSDT 952
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1263-1580 2.28e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.12  E-value: 2.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1263 ELTALGTTDAVGLLNCLEQRIQEQGVEYQAAMECLQKADrrSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQ 1342
Cdd:TIGR02168  228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELE--EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1343 QKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLN 1422
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1423 DTLASEQKKSRELQ---WALEKEKAKLGRSEERDKEELEDLKFSLESQKQrnlqlnllleqqkqllnesqQKIESQRMLY 1499
Cdd:TIGR02168  386 SKVAQLELQIASLNneiERLEARLERLEDRRERLQQEIEELLKKLEEAEL--------------------KELQAELEEL 445
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1500 DAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQLQSsdgtgqsrpplpSEDLLKELQKQLEEKHSRIVELLN 1579
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA------------RLDSLERLQENLEGFSEGVKALLK 513

                   .
gi 1825597415 1580 E 1580
Cdd:TIGR02168  514 N 514
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
207-523 2.32e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 43.34  E-value: 2.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKqLEKMRKFL-- 284
Cdd:COG3096    354 QADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAA-LERAKELChl 432
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  285 -DEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKC--SELLLSKEQLQRDIQERN--- 358
Cdd:COG3096    433 pDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELarSEAWDVARELLREGPDQRhla 512
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  359 EEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKPELSlevqlQAERDAIDRKEKEItnLEEQLEQFREELENKN 438
Cdd:COG3096    513 EQVQPLRMRLSELEQRL------------RQQQSAERLLADFC-----KRQGKNLDAEELEA--LHQELEALIESLSDSV 573
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  439 EEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKE--VEIDQLNEQV 516
Cdd:COG3096    574 SNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREatVERDELGARK 653

                   ....*..
gi 1825597415  517 TKLQQQL 523
Cdd:COG3096    654 NALDEEI 660
HCR pfam07111
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ...
148-644 2.57e-03

Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.


Pssm-ID: 284517 [Multi-domain]  Cd Length: 749  Bit Score: 42.82  E-value: 2.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  148 LFERQIQEktdiIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV-----------------EQQLL 210
Cdd:pfam07111   67 LISRQLQE----LRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLraalagaemvrknleegSQREL 142
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  211 QETEKLMKEKLEVQCQAEKVR--------DDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQL---EK 279
Cdd:pfam07111  143 EEIQRLHQEQLSSLTQAHEEAlssltskaEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVtlvES 222
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  280 MRKFLDEQAIDREH--------------------ERDVFQQEIQKLEQQLKVVPRFQPISEHQ-TREVEQLANHLKEKTD 338
Cdd:pfam07111  223 LRKYVGEQVPPEVHsqtwelerqelldtmqhlqeDRADLQATVELLQVRVQSLTHMLALQEEElTRKIQPSDSLEPEFPK 302
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  339 KCSELLLSKE--------QLQRDIQERNEEIEKLEFRVRELEQALLVS----ADTFQKVEDRKHFGAVEAKPELSLEVQL 406
Cdd:pfam07111  303 KCRSLLNRWRekvfalmvQLKAQDLEHRDSVKQLRGQVAELQEQVTSQsqeqAILQRALQDKAAEVEVERMSAKGLQMEL 382
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  407 QAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkkESTTRLQELEQenklfkddmeKLGLAIKESdam 486
Cdd:pfam07111  383 SRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVE----QAVARIPSLSN----------RLSYAVRKV--- 445
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  487 stqdqHVLFGKFAQIIQEKEVEIDQ--LNEQVTKLQQQLKITTDnKVIEEKNELirDLETQIECLMSDQEcVKRNREE-- 562
Cdd:pfam07111  446 -----HTIKGLMARKVALAQLRQEScpPPPPAPPVDADLSLELE-QLREERNRL--DAELQLSAHLIQQE-VGRAREQge 516
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  563 -EIEQLNEVIEKLQQE-------LANIGQKTSM---NAHSLSEEADSLKHQLdvVIAEKLALEQQVETANEEMTFMKNVL 631
Cdd:pfam07111  517 aERQQLSEVAQQLEQElqraqesLASVGQQLEVarqGQQESTEEAASLRQEL--TQQQEIYGQALQEKVAEVETRLREQL 594
                          570
                   ....*....|...
gi 1825597415  632 KETNFKMNQLTQE 644
Cdd:pfam07111  595 SDTKRRLNEARRE 607
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
354-627 3.08e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 42.61  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  354 IQERNEEIEklEFRVRELEQALLVSADTFQKVedRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEqleqfreE 433
Cdd:PRK05771    33 IEDLKEELS--NERLRKLRSLLTKLSEALDKL--RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEK-------E 101
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  434 LENKNEEVQQLhmqleiqkkesTTRLQELEQEnklfKDDMEKLG-LAIKESDAMSTQDQHVLFGK-FAQIIQEKEVEIDQ 511
Cdd:PRK05771   102 IKELEEEISEL-----------ENEIKELEQE----IERLEPWGnFDLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDV 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  512 LNEQVTKLQQQLK---ITTDNKVIEEKNELIRDLETQI----ECLMSDQecVKRNREEEIEQLNEVIEKLQQELANIGQK 584
Cdd:PRK05771   167 ENVEYISTDKGYVyvvVVVLKELSDEVEEELKKLGFERleleEEGTPSE--LIREIKEELEEIEKERESLLEELKELAKK 244
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1825597415  585 tsmnahslseEADSLKHQLDVVIAEKLALEQQVETANEEMTFM 627
Cdd:PRK05771   245 ----------YLEELLALYEYLEIELERAEALSKFLKTDKTFA 277
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
191-933 3.20e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 42.40  E-value: 3.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  191 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDdLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQN 270
Cdd:pfam05483   83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQE-LQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLK 161
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  271 QALEKQLEKMRKFLDEqaidREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVeqlanHLKEKTDKcselllskEQL 350
Cdd:pfam05483  162 ETCARSAEKTKKYEYE----REETRQVYMDLNNNIEKMILAFEELRVQAENARLEM-----HFKLKEDH--------EKI 224
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  351 QRDIQERNEEIEKLEFRVRELeqaLLVSADTFQKVEDrkhfgaveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQF 430
Cdd:pfam05483  225 QHLEEEYKKEINDKEKQVSLL---LIQITEKENKMKD--------------LTFLLEESRDKANQLEEKTKLQDENLKEL 287
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  431 REELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEID 510
Cdd:pfam05483  288 IEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVV-TEFEATTCSLEELLR 366
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  511 QLNEQVTKLQQQLKITT-----DNKVIEEKNELIRDLETQIE----CLMSDQECVKRNREeeIEQLNEVIEKLQQELANI 581
Cdd:pfam05483  367 TEQQRLEKNEDQLKIITmelqkKSSELEEMTKFKNNKEVELEelkkILAEDEKLLDEKKQ--FEKIAEELKGKEQELIFL 444
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  582 GQKTSMNAHSLSEEADSLK----HQLDVVIAEKLALEQQvETANEEMTFMKNVLKETNFKMNQLTQEL-FSLKRERESVE 656
Cdd:pfam05483  445 LQAREKEIHDLEIQLTAIKtseeHYLKEVEDLKTELEKE-KLKNIELTAHCDKLLLENKELTQEASDMtLELKKHQEDII 523
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  657 KIQSIPENSVNvAIDHLSKD----KPELEVVLTEDALKSLENQTYFKSFEENGKgsiiNLETRLLQLESTVSAKDLELTQ 732
Cdd:pfam05483  524 NCKKQEERMLK-QIENLEEKemnlRDELESVREEFIQKGDEVKCKLDKSEENAR----SIEYEVLKKEKQMKILENKCNN 598
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  733 CYKQIKDMQ---EQGQFETEMLQKKIVNLQKivEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLRE 809
Cdd:pfam05483  599 LKKQIENKNkniEELHQENKALKKKGSAENK--QLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEE 676
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  810 DELGSDISALTLRISELESQVVEMHTSlilekEQVEIAEKNvlekekkllelqkllegnekkQREKEKKRSPQDVEV-LK 888
Cdd:pfam05483  677 VEKAKAIADEAVKLQKEIDKRCQHKIA-----EMVALMEKH---------------------KHQYDKIIEERDSELgLY 730
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 1825597415  889 TTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEE 933
Cdd:pfam05483  731 KNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKME 775
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
344-592 3.23e-03

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 42.35  E-value: 3.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  344 LLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSA--DTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEIT 421
Cdd:COG1269     30 LVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEvlDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSS 109
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  422 NLEEQ---LEQFREELENKNEEVQQLHMQLEIQKK--ESTTRLQELEQEN-KLFKDDMEKLGLAIKESDamstqdqhvLF 495
Cdd:COG1269    110 EVEELtrkLEERLSELDEELEDLEDLLEELEPLAYldFDLSLLRGLKFLLvRLGLVRREKLEALVGVIE---------DE 180
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  496 GKFAQIIQEKEVEI-----DQLNEQVTKLQQQLKIT---------TDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE 561
Cdd:COG1269    181 VALYGENVEASVVIvvahgAEDLDKVSKILNELGFElyevpefdgGPSELISELEEVIAEIQDELESLRSELEALAEKIA 260
                          250       260       270
                   ....*....|....*....|....*....|.
gi 1825597415  562 EEIEQLNEVIEKlQQELANIGQKTSMNAHSL 592
Cdd:COG1269    261 EELLAVREILEI-EKALGDVLSKLARTEYTL 290
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
127-760 3.24e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 42.73  E-value: 3.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  127 QLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSR-QKEAMKAEAGPV 205
Cdd:TIGR00606  416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKaERELSKAEKNSL 495
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  206 EQQLLQETEKLMKEKLEV--------QCQAEKVRD-DLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLR---QQNQAL 273
Cdd:TIGR00606  496 TETLKKEVKSLQNEKADLdrklrkldQEMEQLNHHtTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfPNKKQL 575
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  274 EKQLEKMRKfldEQAIDREHERDVfQQEIQKLEQQlkvvprfqpiSEHQTREVEQLANHLKEKTDKCSElLLSKEQLQRD 353
Cdd:TIGR00606  576 EDWLHSKSK---EINQTRDRLAKL-NKELASLEQN----------KNHINNELESKEEQLSSYEDKLFD-VCGSQDEESD 640
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  354 IQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREE 433
Cdd:TIGR00606  641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  434 LENKNEE------VQQLHMQLEIQK-KESTTRLQELEQENKLFKDDMEK----LG-LAIKESDAMSTQDQHVLFGKFAQI 501
Cdd:TIGR00606  721 KEKRRDEmlglapGRQSIIDLKEKEiPELRNKLQKVNRDIQRLKNDIEEqetlLGtIMPEEESAKVCLTDVTIMERFQME 800
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  502 IQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLmsdQECVKrNREEEIEQLNEVIEKLQQELANI 581
Cdd:TIGR00606  801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELN---RKLIQ-DQQEQIQHLKSKTNELKSEKLQI 876
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  582 G------QKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVlKETNFKMNQLtqELFSLKRERESV 655
Cdd:TIGR00606  877 GtnlqrrQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS-KETSNKKAQD--KVNDIKEKVKNI 953
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  656 EKIQSIPENSVNVAIDHLSKDKpelEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRLLQleSTVSAKDLELTQCYK 735
Cdd:TIGR00606  954 HGYMKDIENKIQDGKDDYLKQK---ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQ--ERWLQDNLTLRKREN 1028
                          650       660
                   ....*....|....*....|....*.
gi 1825597415  736 QIKDMQEQ-GQFETEMLQKKIVNLQK 760
Cdd:TIGR00606 1029 ELKEVEEElKQHLKEMGQMQVLQMKQ 1054
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
80-648 3.25e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.65  E-value: 3.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415   80 PYSLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRA----REQLAVELSKAEGVIDGYADEKTLFERQI-Q 154
Cdd:TIGR00618  294 PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSsieeQRRLLQTLHSQEIHIRDAHEVATSIREIScQ 373
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  155 EKTD---------IIDRLEQELLCASNRLQELEAeqQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQC 225
Cdd:TIGR00618  374 QHTLtqhihtlqqQKTTLTQKLQSLCKELDILQR--EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTA 451
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  226 QAEKVRDDLQK---QVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDR----------- 291
Cdd:TIGR00618  452 QCEKLEKIHLQesaQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdnpgpltrrmq 531
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  292 --EHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVR 369
Cdd:TIGR00618  532 rgEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  370 ELEQALLV----SADTFQKVEDRKHFGAVEAKPELSLE-VQLQAERDAIDRKEKEITNLEEQLEQFREELENKneevqql 444
Cdd:TIGR00618  612 CEQHALLRklqpEQDLQDVRLHLQQCSQELALKLTALHaLQLTLTQERVREHALSIRVLPKELLASRQLALQK------- 684
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  445 hmqLEIQKKESTTRLQELEQENKLFKDDMEKlglaIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLK 524
Cdd:TIGR00618  685 ---MQSEKEQLTYWKEMLAQCQTLLRELETH----IEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLK 757
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  525 ITTDNKVIEEKNELIRD-LETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQL 603
Cdd:TIGR00618  758 ARTEAHFNNNEEVTAALqTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRL 837
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*
gi 1825597415  604 DVVIAEKLALEQQVETaNEEMTFMKNVLKETNFKMNQLTQELFSL 648
Cdd:TIGR00618  838 EEKSATLGEITHQLLK-YEECSKQLAQLTQEQAKIIQLSDKLNGI 881
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1302-1636 3.33e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 3.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1302 RRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMK---DRATELQEQLSSEKMVVAE 1378
Cdd:TIGR02168  675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQLEERIAQLSK 754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1379 LKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEvhlLNDTLASEQKKSRELQWALEKEKAKLGRSEERdkeeLE 1458
Cdd:TIGR02168  755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ---LKEELKALREALDELRAELTLLNEEAANLRER----LE 827
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1459 DLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSeeqgrnlELQVLLESEKVRIREMSSTLDRERELH 1538
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-------ELEALLNERASLEEALALLRSELEELS 900
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1539 AQLQSSDGTgqsrpplpsedlLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMekdRQVHRKTLQTEQEANTEGQK 1618
Cdd:TIGR02168  901 EELRELESK------------RSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALENKIED 965
                          330
                   ....*....|....*...
gi 1825597415 1619 KMHELQSKVEDLQRQLEE 1636
Cdd:TIGR02168  966 DEEEARRRLKRLENKIKE 983
mukB PRK04863
chromosome partition protein MukB;
324-643 3.56e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 3.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  324 REVEQLANHLKEKTDKCSELLLSKEQL---QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKV-EDRKHFGAVEAKPE 399
Cdd:PRK04863   276 RHANERRVHLEEALELRRELYTSRRQLaaeQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVqTALRQQEKIERYQA 355
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  400 LSLEVQLQAERDAIDRKEkeitnLEEQLEQFREELENKNEEVQQLHMQL--------EIQKKESTTR--LQELEQENKLF 469
Cdd:PRK04863   356 DLEELEERLEEQNEVVEE-----ADEQQEENEARAEAAEEEVDELKSQLadyqqaldVQQTRAIQYQqaVQALERAKQLC 430
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  470 KDDmeklGLAIKESDAMstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEK-------------- 535
Cdd:PRK04863   431 GLP----DLTADNAEDW---------------LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQayqlvrkiagevsr 491
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  536 -------NELIRDLETQIecLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNaHSLSEEADSLKHQLDvviA 608
Cdd:PRK04863   492 seawdvaRELLRRLREQR--HLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKN-LDDEDELEQLQEELE---A 565
                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1825597415  609 EKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 643
Cdd:PRK04863   566 RLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
402-960 3.61e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.36  E-value: 3.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  402 LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLhmqleiqkKESTTRLQELEQENKLFKDDMEKLGLAIK 481
Cdd:PRK03918   191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL--------EELKEEIEELEKELESLEGSKRKLEEKIR 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  482 ESDAMstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQ----QLKITTDNKVIEEKNELIRDLETQIECLMSDQECVK 557
Cdd:PRK03918   263 ELEER---------------IEELKKEIEELEEKVKELKElkekAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE 327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  558 R------NREEEIEQLNEVIEKLQQELANIGQKtsmnaHSLSEEADSLKHQLDVVIAEKLALEqqVETANEEMTFMKNVL 631
Cdd:PRK03918   328 ErikeleEKEERLEELKKKLKELEKRLEELEER-----HELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAK 400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  632 KETNFKMNQLTQELFSLKRERESVEKiqsipensvnvAIDHLSKDKPELEVV---LTEDALKSLENQtYFKSFE--ENGK 706
Cdd:PRK03918   401 EEIEEEISKITARIGELKKEIKELKK-----------AIEELKKAKGKCPVCgreLTEEHRKELLEE-YTAELKriEKEL 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  707 GSIIN----LETRLLQLESTVSA--KDLELTQCYKQIKDMQEQ-GQFETEMLQKKIVNLQKIVEEkvAAALVSQI----- 774
Cdd:PRK03918   469 KEIEEkerkLRKELRELEKVLKKesELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEK--LIKLKGEIkslkk 546
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  775 QLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELgSDISALTLRISELES------QVVEMHTSLILEKEQVEIAE 848
Cdd:PRK03918   547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGF-ESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLE 625
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  849 KNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKT-TTELfhSNEESGF---FNELEALRAESVATKAELASYK 924
Cdd:PRK03918   626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREeYLEL--SRELAGLraeLEELEKRREEIKKTLEKLKEEL 703
                          570       580       590
                   ....*....|....*....|....*....|....*.
gi 1825597415  925 EKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKE 960
Cdd:PRK03918   704 EEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
mukB PRK04863
chromosome partition protein MukB;
348-524 4.14e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.25  E-value: 4.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  348 EQLQRDIQERNEEIEKLEFRVRELEQAllvsadtfqkVEDRKHFGAVEAKPELSL--EVQLQAERDAIDRKEKEITNLEE 425
Cdd:PRK04863   789 EQLRAEREELAERYATLSFDVQKLQRL----------HQAFSRFIGSHLAVAFEAdpEAELRQLNRRRVELERALADHES 858
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  426 QLEQFREELENKNEEVQQLHM---QLEIQKKES-TTRLQELEQEnklfkddmeklgLAIKESDAMSTQDQHVLFGKFAQI 501
Cdd:PRK04863   859 QEQQQRSQLEQAKEGLSALNRllpRLNLLADETlADRVEEIREQ------------LDEAEEAKRFVQQHGNALAQLEPI 926
                          170       180
                   ....*....|....*....|....*.
gi 1825597415  502 ---IQEKEVEIDQLNEQVTKLQQQLK 524
Cdd:PRK04863   927 vsvLQSDPEQFEQLKQDYQQAQQTQR 952
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
192-543 6.04e-03

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 41.82  E-value: 6.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  192 SRQKEAMKAEAGPVEQ--QLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEidveeqvsRFIELEQEKNTelmdlrQQ 269
Cdd:pfam15964  321 SSLAEAQQRESSAYEQvkQAVQMTEEANFEKTKALIQCEQLKSELERQKERLE--------KELASQQEKRA------QE 386
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  270 NQALEKQLEKMRKFLDEQAIdreherdVFQQEIQKLEQQLKVVPRFQPISEHQTREVE-QLANHLKEKTDKCSEL--LLS 346
Cdd:pfam15964  387 KEALRKEMKKEREELGATML-------ALSQNVAQLEAQVEKVTREKNSLVSQLEEAQkQLASQEMDVTKVCGEMryQLN 459
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  347 KEQLQRDIQE------RNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSL-------EVQL---QAER 410
Cdd:pfam15964  460 QTKMKKDEAEkehreyRTKTGRQLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLtellgesEHQLhltRLEK 539
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  411 DAIDR---------------KEKEITNLEEQLEQFREELENK---------------NEEVQQLHMQLEIQKKESTTRLQ 460
Cdd:pfam15964  540 ESIQQsfsneakaqalqaqqREQELTQKMQQMEAQHDKTVNEqyslltsqntfiaklKEECCTLAKKLEEITQKSRSEVE 619
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415  461 ELEQENKLFKDDMEKLGLAIKESDamstqDQHVLFGKFAQIIQEKEVEIDQlNEQVTKLQQQLKITTDNKVIEEKNELIR 540
Cdd:pfam15964  620 QLSQEKEYLQDRLEKLQKRNEELE-----EQCVQHGRMHERMKQRLRQLDK-HCQATAQQLVQLLSKQNQLFKERQNLTE 693

                   ...
gi 1825597415  541 DLE 543
Cdd:pfam15964  694 EVQ 696
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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