|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
1919-2000 |
2.36e-25 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 431316 Cd Length: 77 Bit Score: 101.12 E-value: 2.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1919 KYLRAESFRKALIYQKKYLLLLLGGFQECEDATLALLARMGGQPAFTdleviTNRPKGFTRFRSAVRVSIAISRMKFLVR 1998
Cdd:pfam10495 1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPRDD-----RPRRKPRRKLKSAALAVIAIARMKRLAR 75
|
..
gi 1825597415 1999 RW 2000
Cdd:pfam10495 76 EW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
231-584 |
1.68e-16 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 86.31 E-value: 1.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 231 RDDLQKQVKALEIDVEEQVSRFIELEQEknteLMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQqlk 310
Cdd:COG1196 662 SLAQKRELKELEEELAELEAQLEKLEEE----LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ--- 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 311 vvprFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKH 390
Cdd:COG1196 735 ----LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 391 FGAVEAKPELSLEVQLQAErdaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFK 470
Cdd:COG1196 811 ALERELESLEQRRERLEQE---IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 471 DDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLM 550
Cdd:COG1196 888 ELEEELRELESELAELKEEIE-----KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
|
330 340 350
....*....|....*....|....*....|....
gi 1825597415 551 SdqecVKRNREEEIEQLNEVIEKLQQELANIGQK 584
Cdd:COG1196 963 P----VNLRAIEEYEEVEERYEELKSQREDLEEA 992
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-647 |
5.89e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 5.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 244 DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAidreherdvfqqeiQKLEQQLKVVPRFQPISEHQT 323
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS--------------RQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 324 REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAkpeLSLE 403
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 404 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 480
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 481 KESDamstqdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQ---QQLKITTDNKVIEEKNELIRDLETQIEClmsdqecvK 557
Cdd:TIGR02168 904 RELE---------------SKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEAL--------E 960
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 558 RNREEEIEQLNEVIEKLQQELANIGQkTSMNA----HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKE 633
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGP-VNLAAieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE---ARERFKD 1036
|
410
....*....|....
gi 1825597415 634 TNFKMNQLTQELFS 647
Cdd:TIGR02168 1037 TFDQVNENFQRVFP 1050
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
239-979 |
4.50e-15 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 81.68 E-value: 4.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 239 KALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVprfqpi 318
Cdd:COG1196 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL------ 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 319 sehqTREVEQLANHLkektdkcselllskEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgaveakp 398
Cdd:COG1196 245 ----EEELSRLEEEL--------------EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIE-------- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 399 elSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEK 475
Cdd:COG1196 299 --ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELeerETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 476 LGLAIKE--SDAMSTQDQHvlfgkfAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIEC 548
Cdd:COG1196 377 LFEALREelAELEAELAEI------RNELEELKREIESLEERLERLSERLedlkeELKELEAELEELQTELEELNEELEE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 549 LMSDQECVKRNR---EEEIEQLNEVIEKLQQELANIGQKTSMnahsLSEEADSLKHQLDVVIAEKLALEQQVETANEEMT 625
Cdd:COG1196 451 LEEQLEELRDRLkelERELAELQEELQRLEKELSSLEARLDR----LEAEQRASQGVRAVLEALESGLPGVYGPVAELIK 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 626 F---------------MKNVLKETN---------FKMNQLTQELF-SLKRERESVEKIQSIPENSVNVAIDHLSKDKPel 680
Cdd:COG1196 527 VkekyetaleaalgnrLQAVVVENEevakkaiefLKENKAGRATFlPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPK-- 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 681 evvlTEDALKSLENQTYFKSFEENGKG--SIINLETRLLQLESTV-----------------SAKDLELTQCYKQIKDMQ 741
Cdd:COG1196 605 ----YEPAVRFVLGDTLVVDDLEQARRlaRKLRIKYRIVTLDGDLvepsgsitggsrnkrssLAQKRELKELEEELAELE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 742 EQgQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKfcQDNQTISSEPERTNIQNLNQLRE-DELGSDISALT 820
Cdd:COG1196 681 AQ-LEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK--RELAALEEELEQLQSRLEELEEElEELEEELEELQ 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 821 LRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELfHSNEEs 900
Cdd:COG1196 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI-EELEE- 835
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1825597415 901 gffnELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEKEDETEVQESKKA 979
Cdd:COG1196 836 ----EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
347-968 |
1.56e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 347 KEQLQRDIQERNEEIEKLEFRVRELE--------QALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEK 418
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELErqlkslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 419 EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE---STTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVL- 494
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLd 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 495 -----FGKFAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEI 564
Cdd:TIGR02168 334 elaeeLAELEEKLEELKEELESLEAELEELEAELeelesRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 565 EQLNEVIEKLQQELANIGQKTSMNA-HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 643
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 644 ELFSLKRERESVEKI----------QSIPENSVNVAIDHLS---KDKPELEVVLTE--DALKSLENQTYFKSFE-----E 703
Cdd:TIGR02168 490 RLDSLERLQENLEGFsegvkallknQSGLSGILGVLSELISvdeGYEAAIEAALGGrlQAVVVENLNAAKKAIAflkqnE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 704 NGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEkVAAALVSQIQLEAvqEYA 783
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRP--GYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 784 KFCQDNQTISSE------PERTNIQNLNQLRE-DELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEK 856
Cdd:TIGR02168 647 IVTLDGDLVRPGgvitggSAKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 857 KLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTtelfhsNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLV 936
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELE------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670
....*....|....*....|....*....|..
gi 1825597415 937 KETNMTSLQKDLSQVRDHLAEAKEKLSILEKE 968
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERR 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
125-829 |
8.53e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 8.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 125 REQLAVELSKAEGVIDGYADEKTLFERQIQEKTDI-------IDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEA 197
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEvseleeeIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 198 MKAEAGPVEQQL--LQETEKLMKEKLEvqcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE---KNTELMDLRQQNQA 272
Cdd:TIGR02168 321 LEAQLEELESKLdeLAEELAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 273 LEKQLEKMRKFLdeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQR 352
Cdd:TIGR02168 398 LNNEIERLEARL--ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 353 DIQERNEEIEKLEFRVRELEqALLVSADTFQK-----VEDRKHFGA----------VEAKPELSLEVQLQAERDAIDRKE 417
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLE-RLQENLEGFSEgvkalLKNQSGLSGilgvlselisVDEGYEAAIEAALGGRLQAVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 418 KEITNLE-EQLEQ-------FREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL--GLAIKESDAMS 487
Cdd:TIGR02168 555 LNAAKKAiAFLKQnelgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 488 TQDQHVL-----------------------FGKFAQIIQEKEVEIDQLNEQVTKLQQQLKIT--------TDNKVIEEKN 536
Cdd:TIGR02168 635 LELAKKLrpgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELekalaelrKELEELEEEL 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 537 ELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADslkhQLDVVIAEKLALEQQ 616
Cdd:TIGR02168 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE----ELAEAEAEIEELEAQ 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 617 VETANEEMTF-------MKNVLKETNFKMNQLTQELFSLKRERESVEK-IQSIPEN---------SVNVAIDHLSKDKPE 679
Cdd:TIGR02168 791 IEQLKEELKAlrealdeLRAELTLLNEEAANLRERLESLERRIAATERrLEDLEEQieelsedieSLAAEIEELEELIEE 870
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 680 LevvltEDALKSLENQtyFKSFEEN---GKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQgqfeTEMLQKKIV 756
Cdd:TIGR02168 871 L-----ESELEALLNE--RASLEEAlalLRSELEELSEELRELESKRSELRRELEELREKLAQLELR----LEGLEVRID 939
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1825597415 757 NLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELgsdiSALTLRISELESQ 829
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEY----EELKERYDFLTAQ 1008
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
191-764 |
1.23e-13 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 76.72 E-value: 1.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 191 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKvrdDLQKQVKALEIDVEEQVSRFIELEQEKntelmdlrQQN 270
Cdd:COG0419 183 AKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEI---QEEQEEEELEQEIEALEERLAELEEEK--------ERL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 271 QALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehQTREVEQLANHLKEKTDKCSELLLSKEQL 350
Cdd:COG0419 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIE-----------RLEELEREIEELEEELEGLRALLEELEEL 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 351 QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQ 429
Cdd:COG0419 321 LEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEeLEKELEKALERLKQLEEAIQELKEELAE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 430 FREELENKNE---EVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKE 506
Cdd:COG0419 401 LSAALEEIQEeleELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYE 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 507 VEIDQLNEQVTKLQQQLKIttdNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKts 586
Cdd:COG0419 481 LELEELEEELSREKEEAEL---REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQ-- 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 587 mnahSLSEEADSLkhqldvviAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL-KRERESVEKIQSIPENS 665
Cdd:COG0419 556 ----QLKEELRQL--------EDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELeERLSQLEELLQSLELSE 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 666 VNVAIDHLSKDKPELEvvltEDALKSLENQTYFKSFEENGKGSIINLETRLLQLESTV--SAKDLELTQCYKQIKDMQEQ 743
Cdd:COG0419 624 AENELEEAEEELESEL----EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIenEEQLEEKLEELEQLEEELEQ 699
|
570 580
....*....|....*....|.
gi 1825597415 744 GQFETEMLQKKIVNLQKIVEE 764
Cdd:COG0419 700 LREELEELLKKLGEIEQLIEE 720
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
274-980 |
8.48e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 8.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 274 EKQLEKMRKFLDE-QAIDREHERDVfqqeiQKLEQQLKVVPRFQPISEhQTREVEQ--LANHLKEKTDKCSELLLSKEQL 350
Cdd:TIGR02168 178 ERKLERTRENLDRlEDILNELERQL-----KSLERQAEKAERYKELKA-ELRELELalLVLRLEELREELEELQEELKEA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 351 QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgavEAKPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQ 429
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISrLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 430 FREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQI------IQ 503
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEE----LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslnneIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 504 EKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVkRNREEEIEQLNEVIEKLQQELanigQ 583
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEEAEQAL----D 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 584 KTSMNAHSLSEEADSLKhqldvviaeklALEQQVETANEEMTFMKNVLKETNFKMNQLtQELFSLKRE---------RES 654
Cdd:TIGR02168 479 AAERELAQLQARLDSLE-----------RLQENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGyeaaieaalGGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 655 VEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALK---SLENQTYFKSFEENGKGSIINLETRLLQLESTVS------- 724
Cdd:TIGR02168 547 LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvl 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 725 -----------------------------------------------AKDLELTQCYKQIKDMQEQ---GQFETEMLQKK 754
Cdd:TIGR02168 627 vvddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKiaeLEKALAELRKE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 755 IVNLQKIVEEKVAAALVSQIQLEAVQE-YAKFCQDNQTISSEPERTNIQNLNQL-REDELGSDISALTLRISELESQVVE 832
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQISALRKdLARLEAEVEQLEERIAQLSKELTELEaEIEELEERLEEAEEELAEAEAEIEE 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 833 MHTSLilekEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFhsneesgffNELEALRAE 912
Cdd:TIGR02168 787 LEAQI----EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE---------EQIEELSED 853
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1825597415 913 SVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLsileKEDETEVQESKKAC 980
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL----RELESKRSELRREL 917
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
122-445 |
3.54e-11 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 68.97 E-value: 3.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 122 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAE 201
Cdd:COG1196 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQER 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 202 AGPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEkQLEKMR 281
Cdd:COG1196 760 LEELEEELESLEEALAKLKEEIE-ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE-ELEEEI 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 282 KFLDEQAIDREHERDVFQQEIQKLEQQLkvvprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEI 361
Cdd:COG1196 838 EELEEKLDELEEELEELEKELEELKEEL----------EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 362 EKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKPELSLEVQLQAERDaIDRKEKEITNLE-------EQLEQFREEL 434
Cdd:COG1196 908 EKLRERLEELEAKL-------ERLEVELPELEEELEEEYEDTLETELERE-IERLEEEIEALGpvnlraiEEYEEVEERY 979
|
330
....*....|.
gi 1825597415 435 ENKNEEVQQLH 445
Cdd:COG1196 980 EELKSQREDLE 990
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
131-827 |
7.96e-11 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 67.82 E-value: 7.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 131 ELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLL 210
Cdd:COG1196 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 211 QETEKLM--KEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRF-----------IELEQEKNTELMDLRQQNQALEKQL 277
Cdd:COG1196 320 ELEERLEelKEKIEALKEELEERETLLEELEQLLAELEEAKEELeeklsalleelEELFEALREELAELEAELAEIRNEL 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 278 EKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQER 357
Cdd:COG1196 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 358 NEEIEKLEFRVRELEQALLVSADTFQKVEDRK-----------HFGAVEAKPELSLEVQLQAERDAI----DRKEKEITN 422
Cdd:COG1196 480 EKELSSLEARLDRLEAEQRASQGVRAVLEALEsglpgvygpvaELIKVKEKYETALEAALGNRLQAVvvenEEVAKKAIE 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 423 LEEQLEQFR---------EELENKNEEVQQLHMQLEIQKKESTTRLQE--------------LEQENKLFKDDMEKLGLA 479
Cdd:COG1196 560 FLKENKAGRatflpldriKPLRSLKSDAAPGFLGLASDLIDFDPKYEPavrfvlgdtlvvddLEQARRLARKLRIKYRIV 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 480 IKESD------AMSTQDQHVLFGKFAQI-IQEKEVEIDQLNEQVTKLQQQLKITtdNKVIEEKNELIRDLETQIeclmsd 552
Cdd:COG1196 640 TLDGDlvepsgSITGGSRNKRSSLAQKReLKELEEELAELEAQLEKLEEELKSL--KNELRSLEDLLEELRRQL------ 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 553 qecvkRNREEEIEQLNEVIEKLQQELANIGQKtsmnAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLK 632
Cdd:COG1196 712 -----EELERQLEELKRELAALEEELEQLQSR----LEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 633 ETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEvVLTEDALKSLENQTYFKSFEENGKGSIINL 712
Cdd:COG1196 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE-ELEEEIEELEEKLDELEEELEELEKELEEL 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 713 ETRLLQLESTVSAKDLELTQCYKQIKDMQEQgqfetemLQKKIVNLQKIVEEKvaaalvsQIQLEAVQEYAKFCQDNQTI 792
Cdd:COG1196 862 KEELEELEAEKEELEDELKELEEEKEELEEE-------LRELESELAELKEEI-------EKLRERLEELEAKLERLEVE 927
|
730 740 750
....*....|....*....|....*....|....*
gi 1825597415 793 SSEPERTNIQNLNQLREDELGSDISALTLRISELE 827
Cdd:COG1196 928 LPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
83-657 |
1.44e-10 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 66.66 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 83 LEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIdgyadektlfERQIQEKTDIIDR 162
Cdd:COG1196 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL----------EELFEALREELAE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 163 LEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALE 242
Cdd:COG1196 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE-ELEEQLEELRDRLKELE 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 243 IDVEEQVsrfiELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQeiqkLEQQLKVVPRFQP----- 317
Cdd:COG1196 467 RELAELQ----EELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGP----VAELIKVKEKYETaleaa 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 318 -------ISEHQTREVEQLANHLKE-KTDKCSELLLSKEQLQRDIQERNEE------IEKLEFR---------------- 367
Cdd:COG1196 539 lgnrlqaVVVENEEVAKKAIEFLKEnKAGRATFLPLDRIKPLRSLKSDAAPgflglaSDLIDFDpkyepavrfvlgdtlv 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 368 VRELEQALLVSADTFQKVE---------DRKHF---GAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELE 435
Cdd:COG1196 619 VDDLEQARRLARKLRIKYRivtldgdlvEPSGSitgGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELR 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 436 NKNEEVQQLHMQLEIQKKEST---TRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgkfaQIIQEKEVEIDQL 512
Cdd:COG1196 699 SLEDLLEELRRQLEELERQLEelkRELAALEEELEQLQSRLEELEEELEELEEELEELQ--------ERLEELEEELESL 770
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 513 NEQVTKLQQQLKITTDNKviEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSL 592
Cdd:COG1196 771 EEALAKLKEEIEELEEKR--QALQEELEELEEELE----EAERRLDALERELESLEQRRERLEQEIEELEEEIE----EL 840
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 593 SEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 657
Cdd:COG1196 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
228-617 |
7.37e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 7.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 228 EKVRDDLQKqvkaleidVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQ 307
Cdd:TIGR02169 173 EKALEELEE--------VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 308 QLkvvprfqpisehqtreveqlanhlkektdkcSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKVED 387
Cdd:TIGR02169 245 QL-------------------------------ASLEEELEKLTEEISELEKRLEEIEQLLEELN----------KKIKD 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 388 RKHFGAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKES---TTRLQELE 463
Cdd:TIGR02169 284 LGEEEQLRVKEKIgELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRdklTEEYAELK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 464 QENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEK-NELIRD 541
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKL-EKLKREINELKRELDRLQEELQRLSEELaDLNAAIAGIEAKiNELEEE 442
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415 542 LETQIECLmsdqecvkRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQV 617
Cdd:TIGR02169 443 KEDKALEI--------KKQEWKLEQLAADLSKYEQELYDLKEEYD----RVEKELSKLQRELAEAEAQARASEERV 506
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
259-806 |
1.19e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.50 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 259 KNTELMDLRQQNQALEKQL---EKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtreveQLANHLKE 335
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELknkEKELKNLDKNLNKDEEKINNSNNKIKILEQQIK-----------------DLNDKLKK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 336 KTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKpelSLEVQLQAERDAIDR 415
Cdd:TIGR04523 94 NKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQK-------KENKKNIDKFLTEIK---KKEKELEKLNNKYND 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 416 KEKEITNLEEQLEQFREELENKNEEVQQLHMQLeIQKKESTTRLQELEQENKLFKDDMEKLGlAIKESDAMSTQDQHVLF 495
Cdd:TIGR04523 164 LKKQKEELENELNLLEKEKLNIQKNIDKIKNKL-LKLELLLSNLKKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 496 GKFAQIIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECL---------------MSDQEC 555
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSekqkeLEQNNKKIKELEKQLNQLKSEISDLnnqkeqdwnkelkseLKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 556 VKRNREEEIEQLNEVIEKLQQELANIgQKTSMNAHS----LSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVL 631
Cdd:TIGR04523 322 KLEEIQNQISQNNKIISQLNEQISQL-KKELTNSESenseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 632 KETNFKMNQLTQELFSLKRERESVEK-IQSIPE--NSVNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEengkGS 708
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKeIERLKEtiIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS----RS 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 709 IINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKvaaalvSQIQLEAVQEYAKFCQD 788
Cdd:TIGR04523 477 INKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK------KEKESKISDLEDELNKD 550
|
570
....*....|....*...
gi 1825597415 789 NQTISSEPERTNIQNLNQ 806
Cdd:TIGR04523 551 DFELKKENLEKEIDEKNK 568
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
410-970 |
1.57e-09 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 63.24 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 410 RDAIDRKEKEITNLEEQL----EQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 485
Cdd:COG0419 177 KEVIKEAKAKIEELEGQLsellEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 486 MSTQDQHvLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNK-VIEEKNELIRDLETQIECLMSDQecvkRNREEEI 564
Cdd:COG0419 257 RLLEIES-LELEALKIREEELRELERLLEELEEKIERLEELEREIeELEEELEGLRALLEELEELLEKL----KSLEERL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 565 EQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 644
Cdd:COG0419 332 EKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 645 LFSLKRERESVEKIQSI---PENSVNVAIDHLSKDKPELEVVLTEDALKSLENQ----TYFKSFEENGKGSIINLETRLL 717
Cdd:COG0419 412 LEELEKELEELERELEEleeEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQelpeEHEKELLELYELELEELEEELS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 718 QLESTVSAKDL--ELTQCYKQIKDMQ-EQGQFETEMLQKKIVNLQKIVEEKV-AAALVSQIQLEAVQEYAKFCQDN-QTI 792
Cdd:COG0419 492 REKEEAELREEieELEKELRELEEELiELLELEEALKEELEEKLEKLENLLEeLEELKEKLQLQQLKEELRQLEDRlQEL 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 793 SSEPERTNIQNLNQLREDELGSDISaltlRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQ 872
Cdd:COG0419 572 KELLEELRLLRTRKEELEELRERLK----ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 873 REKEKKRSPQDVE--VLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQ 950
Cdd:COG0419 648 LEELLQAALEELEekVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAE 727
|
570 580
....*....|....*....|
gi 1825597415 951 VRDHLAEAKEKLSILEKEDE 970
Cdd:COG0419 728 LEELKKELEKLEKALELLEE 747
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
191-962 |
2.05e-09 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 63.19 E-value: 2.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 191 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEvqcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE---KNTELMDLR 267
Cdd:COG1196 218 LKAELRELELALLLAKLKELRKELEELEEELS---RLEEELEELQEELEEAEKEIEELKSELEELREEleeLQEELLELK 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 268 QQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS- 346
Cdd:COG1196 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEl 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 347 ---KEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKhfgAVEAKPELSLEVQLQAERDAIDRKEKEITNL 423
Cdd:COG1196 375 eelFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL---EDLKEELKELEAELEELQTELEELNEELEEL 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 424 EEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMstqdqHVLFGKFAQIIQ 503
Cdd:COG1196 452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL-----PGVYGPVAELIK 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 504 EKE------------------VEIDQLNEQVTKLQQQLKI-------------------TTDNKVIEEKNELIR---DLE 543
Cdd:COG1196 527 VKEkyetaleaalgnrlqavvVENEEVAKKAIEFLKENKAgratflpldrikplrslksDAAPGFLGLASDLIDfdpKYE 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 544 TQIECLMSDQECVKrNREEEIEQLNEVIEK-----LQQELANIGqKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVE 618
Cdd:COG1196 607 PAVRFVLGDTLVVD-DLEQARRLARKLRIKyrivtLDGDLVEPS-GSITGGSRNKRSSLAQKRELKELEEELAELEAQLE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 619 TANEEmtfmknvlketnfkMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEdaLKSLENQtyf 698
Cdd:COG1196 685 KLEEE--------------LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSR--LEELEEE--- 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 699 ksfEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETE---MLQKKIVNLQKIVEEKVAAALVSQIQ 775
Cdd:COG1196 746 ---LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEeleELEEELEEAERRLDALERELESLEQR 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 776 LEAVQEYAKFCQDNQTissepERTNIQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKE 855
Cdd:COG1196 823 RERLEQEIEELEEEIE-----ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 856 KKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFhSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELL 935
Cdd:COG1196 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE-EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976
|
810 820
....*....|....*....|....*..
gi 1825597415 936 VKETNMTSLQKDLSQVRDHLAEAKEKL 962
Cdd:COG1196 977 ERYEELKSQREDLEEAKEKLLEVIEEL 1003
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
149-995 |
4.10e-09 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 62.04 E-value: 4.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 149 FERQIQEKTDIIDRLEQELLCASNRLQEleaeqqqiqeerelLSRQKEAMKAEAGPVEQQLLQETEklmKEKLEVQCQAE 228
Cdd:COG1196 170 YKERKEEAERKLERTEENLERLEDLLEE--------------LEKQLEKLERQAEKAERYQELKAE---LRELELALLLA 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 229 KVRdDLQKQVKALEIDVEEQVSRFIELEQekntELMDLRQQNQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKLEQQ 308
Cdd:COG1196 233 KLK-ELRKELEELEEELSRLEEELEELQE----ELEEAEKEIEELKSELEE----LREELEELQEELLELKEEIEELEGE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 309 LkvvprfqpisEHQTREVEQLANHLKEKTDKcselllsKEQLQRDIQERNEEIEKLEFRVRELEQAllvsadtfqkvedR 388
Cdd:COG1196 304 I----------SLLRERLEELENELEELEER-------LEELKEKIEALKEELEERETLLEELEQL-------------L 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 389 KHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKesttRLQELEQENKL 468
Cdd:COG1196 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE----RLEDLKEELKE 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 469 FKDDMEKLGLAikesdamstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLE 543
Cdd:COG1196 430 LEAELEELQTE----------------------LEELNEELEELEEQLEELRDRLKelereLAELQEELQRLEKELSSLE 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 544 TQIECLMSDQECVKRNReEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEeadSLKHQLDVVIAE-----KLALEQQVE 618
Cdd:COG1196 488 ARLDRLEAEQRASQGVR-AVLEALESGLPGVYGPVAELIKVKEKYETALEA---ALGNRLQAVVVEneevaKKAIEFLKE 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 619 TANEEMTF-----MKNVLKETNFKMNQLTQELFSLKRERESVEKI------QSIPENSVNVAIDHLSKDKPELEVVLTED 687
Cdd:COG1196 564 NKAGRATFlpldrIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAvrfvlgDTLVVDDLEQARRLARKLRIKYRIVTLDG 643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 688 AL-----------KSLENQTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGqfetEMLQKKIV 756
Cdd:COG1196 644 DLvepsgsitggsRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL----EELERQLE 719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 757 NLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLRED--ELGSDISALTLRISELESQVVEMH 834
Cdd:COG1196 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAlaKLKEEIEELEEKRQALQEELEELE 799
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 835 TSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEesgffnELEALRAESV 914
Cdd:COG1196 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE------ELEELEAEKE 873
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 915 ATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEkEDETEVQESKKACMFEPLPIKLSKSIA 994
Cdd:COG1196 874 ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE-VELPELEEELEEEYEDTLETELEREIE 952
|
.
gi 1825597415 995 S 995
Cdd:COG1196 953 R 953
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-577 |
1.05e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 131 ELSKAEGVIDGYADEKTLferQIQEKTDIIDRLEQELlcasnrlqeleaeqqqiqeerellsrqkEAMKAEAgpveqqll 210
Cdd:TIGR02168 653 DLVRPGGVITGGSAKTNS---SILERRREIEELEEKI----------------------------EELEEKI-------- 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 211 QETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAID 290
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 291 REhERDVFQQEIQKLEQQlkvvprfqpisehqtreVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRE 370
Cdd:TIGR02168 774 EE-ELAEAEAEIEELEAQ-----------------IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 371 LEQALLVSADTFQKVEDRkhfgAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQqlhmQLE 449
Cdd:TIGR02168 836 TERRLEDLEEQIEELSED----IESLAAEIeELEELIEELESELEALLNERASLEEALALLRSELEELSEELR----ELE 907
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 450 IQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLK-ITTD 528
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKeLGPV 987
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1825597415 529 N----KVIEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQE 577
Cdd:TIGR02168 988 NlaaiEEYEELKERYDFLTAQKE----DLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
347-703 |
1.05e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 347 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKhfgaveAKPELSLEVQLQAERDAIDRKEKEITNLEEQ 426
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQL-------ERLRRER------EKAERYQALLKEKREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 427 LEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKfaqiIQEKE 506
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS----IAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 507 VEIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQELANIGQK-- 584
Cdd:TIGR02169 315 RELEDAEERLAKLEAE---------IDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRAELEEVDKEfa 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 585 TSMNAHS--------LSEEADSLKHQLDVVIAEKLALEQQVETANEEM-------TFMKNVLKETNFKMNQLTQELFSLK 649
Cdd:TIGR02169 382 ETRDELKdyreklekLKREINELKRELDRLQEELQRLSEELADLNAAIagieakiNELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 650 RERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEdALKSLENQTYFKSFEE 703
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-ARASEERVRGGRAVEE 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
1279-1629 |
1.53e-08 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 60.11 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1279 LEQRIQEQGVEYQAAMECLQKAdrRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSM 1358
Cdd:COG1196 686 LEEELKSLKNELRSLEDLLEEL--RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1359 KDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWA 1438
Cdd:COG1196 764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1439 LEKEKAKLGRSEERdKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLE 1518
Cdd:COG1196 844 LDELEEELEELEKE-LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1519 SEKVRIREMSSTLDRERELhaqlqssdgtgqsrpplpsedllkELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKD 1598
Cdd:COG1196 923 RLEVELPELEEELEEEYED------------------------TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEER 978
|
330 340 350
....*....|....*....|....*....|.
gi 1825597415 1599 RQVHRKTLQTEQEANTEGQKKMHELQSKVED 1629
Cdd:COG1196 979 YEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1289-1661 |
2.65e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1289 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVElssMKDRATELQEQ 1368
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---EAKKADEAKKK 1452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1369 lSSEKMVVAELKSELAQTKLELETTLKAQH-KHLKELEAFRLEVKDKTDEVHllndTLASEQKKSRELQWALEKEKAKLG 1447
Cdd:PTZ00121 1453 -AEEAKKAEEAKKKAEEAKKADEAKKKAEEaKKADEAKKKAEEAKKKADEAK----KAAEAKKKADEAKKAEEAKKADEA 1527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1448 RSEErDKEELEDLKFSLESQKQRNLQLNLLLEQQkqllnESQQKIESQRmlydaqlSEEQGRNLEL---QVLLESEKVRI 1524
Cdd:PTZ00121 1528 KKAE-EAKKADEAKKAEEKKKADELKKAEELKKA-----EEKKKAEEAK-------KAEEDKNMALrkaEEAKKAEEARI 1594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1525 REMSSTLDRERELHA-QLQSSDGTGQSRPPLPSEDLLK----ELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDR 1599
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAeEAKKAEEAKIKAEELKKAEEEKkkveQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 1600 QVHRKTLQTEQEAN--TEGQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKkaAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
228-849 |
2.75e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 228 EKVRDDLQKQVKALEI--DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEqaidREHERDVFQQEIQKL 305
Cdd:PRK03918 144 DESREKVVRQILGLDDyeNAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE----VLREINEISSELPEL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 306 EQQLKVVprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKV 385
Cdd:PRK03918 220 REELEKL-------EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----------EKV 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 386 EDRKHFGAvEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFRE---ELENKNEEVQqlhmQLEIQKKESTTRLQEL 462
Cdd:PRK03918 283 KELKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLE----ELKKKLKELEKRLEEL 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 463 EQENKLFKDDMEKLGLAIKESDAMSTQDqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKittdnKVIEEKNEL---I 539
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKKRLTGLT-----------PEKLEKELEELEKAKEEIEEEIS-----KITARIGELkkeI 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 540 RDLETQIECLMSDQ-ECVKRNREEEIEQLNEVIEKLQQELANIgQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVE 618
Cdd:PRK03918 422 KELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAELKRI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 619 TAnEEMTFMKNVLKETNF-KMNQLTQELFSLKRERESVEKIQSIPENSVNvAIDHLSKDKPELEVVL--TEDALKSLENQ 695
Cdd:PRK03918 501 LA-EQLKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLdeLEEELAELLKE 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 696 tyfksFEENGKGSIINLETRLLQLEStVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIveEKVAAALVSQIQ 775
Cdd:PRK03918 579 -----LEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAET--EKRLEELRKELE 650
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 776 lEAVQEYakfcqdnqtisSEPERTNIQNlnqlREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEK 849
Cdd:PRK03918 651 -ELEKKY-----------SEEEYEELRE----EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
1361-1661 |
2.76e-08 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 59.34 E-value: 2.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1361 RATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTL--ASEQKKSRELQWA 1438
Cdd:COG1196 226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELleLKEEIEELEGEIS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1439 LEKEKAKLGRSEERDKEE-LEDLKFSLESQKQRNLQLNllleqqkqllnESQQKIESQRMLYDAQLSEEQGRNLELQVLL 1517
Cdd:COG1196 306 LLRERLEELENELEELEErLEELKEKIEALKEELEERE-----------TLLEELEQLLAELEEAKEELEEKLSALLEEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1518 ESEKVRIREMSSTLDRER-ELHAQLQSsdgtgqsrpplpsedlLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQME 1596
Cdd:COG1196 375 EELFEALREELAELEAELaEIRNELEE----------------LKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 1597 KDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:COG1196 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGV 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
1302-1636 |
3.84e-08 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 58.96 E-value: 3.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1302 RRSLLSEIQALHAQMNGRKITLKREQESekpsqelLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKS 1381
Cdd:COG1196 665 QKRELKELEEELAELEAQLEKLEEELKS-------LKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1382 ELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLgrseerdkEELEDLK 1461
Cdd:COG1196 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL--------EEAERRL 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1462 FSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERElhaql 1541
Cdd:COG1196 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE----- 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1542 qssdgtgqsrpplpsedLLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEAntEGQKKMH 1621
Cdd:COG1196 885 -----------------EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE--YEDTLET 945
|
330
....*....|....*
gi 1825597415 1622 ELQSKVEDLQRQLEE 1636
Cdd:COG1196 946 ELEREIERLEEEIEA 960
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-444 |
4.21e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 4.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 100 QKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEA 179
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 180 EQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEK 259
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK-ALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 260 NtelmDLRQQNQALEKQLEKMRkfldEQAIDREHERDVFQQEIQKLEQQLKVVprfQPISEHQTREVEQLANHLKEKTDK 339
Cdd:TIGR02168 834 A----ATERRLEDLEEQIEELS----EDIESLAAEIEELEELIEELESELEAL---LNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 340 CSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFqKVEDRKHFGAVEAKPELSLEVQLQAERDaIDRKEKE 419
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAEALENKIEDDEEEARRR-LKRLENK 980
|
330 340 350
....*....|....*....|....*....|..
gi 1825597415 420 ITNL-------EEQLEQFREELENKNEEVQQL 444
Cdd:TIGR02168 981 IKELgpvnlaaIEEYEELKERYDFLTAQKEDL 1012
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
413-765 |
4.35e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.49 E-value: 4.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 413 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQ 489
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLnkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 490 DQHVLFGKFAQIIQeKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLmsdqECVKRNREEEI 564
Cdd:TIGR04523 108 INSEIKNDKEQKNK-LEVELNKLEKQKKENKKNIDkflteIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 565 EQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 644
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLS-NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 645 LFSLKREREsvEKIQSIPENsvNVAIDHLSKDKPELEVVLTEdaLKSLENQTY---FKSFEENGKGSIINLETRLLQLES 721
Cdd:TIGR04523 262 QNKIKKQLS--EKQKELEQN--NKKIKELEKQLNQLKSEISD--LNNQKEQDWnkeLKSELKNQEKKLEEIQNQISQNNK 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1825597415 722 TVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEK 765
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN 379
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1324-1655 |
4.66e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 4.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1324 KREQESEKpSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLssekmvvAELKSELAQTKLELETTLKAQHKHLKE 1403
Cdd:TIGR02168 218 LKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAEL-------QELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1404 LEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEE---RDKEELEDLKFSLESQKQRNLQLNLLLEQ 1480
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1481 QKQLLNESQQKIESQRMLYdAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQlqssdgtgqsrppLPSEDLL 1560
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK-------------KLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1561 KELQKQLEEKHSRIVELLNETEkykldslQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSkVEDLQRQLEEKRQQ 1640
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELE-------RLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG 507
|
330
....*....|....*
gi 1825597415 1641 VYKLDLEGQRLQGIM 1655
Cdd:TIGR02168 508 VKALLKNQSGLSGIL 522
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
191-523 |
5.79e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 5.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 191 LSRQKeAMKAEAGPVEQQLlqetekLMKEKLEVQCQAEKVRDDLQkqvkaleiDVEEQVSRFIELEQEKNTELMDLRQQN 270
Cdd:TIGR02169 210 AERYQ-ALLKEKREYEGYE------LLKEKEALERQKEAIERQLA--------SLEEELEKLTEEISELEKRLEEIEQLL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 271 QALEKQLEKMrkfldeqaidREHERDVFQQEIQKLEQQLKVVPRFQPISEhqtREVEQLANHLKEKTDKCSELLLSKEQL 350
Cdd:TIGR02169 275 EELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 351 QRDIQERNEEIEKLEFRVRELEQALlvsADTFQKVEDrkhfgaveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQF 430
Cdd:TIGR02169 342 EREIEEERKRRDKLTEEYAELKEEL---EDLRAELEE--------------VDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 431 REELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEID 510
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAA----IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQELYDLKEEYD 479
|
330
....*....|...
gi 1825597415 511 QLNEQVTKLQQQL 523
Cdd:TIGR02169 480 RVEKELSKLQREL 492
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
253-660 |
6.54e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 6.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 253 IELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQaidreherdvfQQEIQKLEQQLKVvprfqpISEHQTREVEQLANH 332
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK-----------TTEISNTQTQLNQ------LKDEQNKIKKQLSEK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 333 LKEkTDKCSELLlskEQLQRDIQERNEEIEKLEfrvRELEQALLVSADTFQKVEDRKhfgaveakpELSLEVQLQAERDA 412
Cdd:TIGR04523 273 QKE-LEQNNKKI---KELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKK---------LEEIQNQISQNNKI 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 413 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQenklFKDDMEKLGLAIKESDAMSTQDQH 492
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN----LESQINDLESKIQNQEKLNQQKDE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 493 VLfGKFAQIIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREE---EI 564
Cdd:TIGR04523 413 QI-KKLQQEKELLEKEIERLKETIIKNNSEIKdltnqDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkqkEL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 565 EQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFK--MNQLT 642
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVK----DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEkeIDEKN 567
|
410
....*....|....*...
gi 1825597415 643 QELFSLKRERESVEKIQS 660
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQE 585
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
87-605 |
6.68e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 6.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 87 KVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQE 166
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 167 LLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAgpveqqllqeteklmKEKLEVQCQAEKVRddlqkqvKALEIDVE 246
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE---------------KKKADELKKAEELK-------KAEEKKKA 1566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 247 EQVSRfieLEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQA------IDREHERDVFQQEIQKLEQQLKVVPRFQPISE 320
Cdd:PTZ00121 1567 EEAKK---AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmkaeeAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 321 HQTREVEQLANHLKEKTDKCSELLLSKEQLQRdiqeRNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL 400
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKK----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 401 SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNeEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 480
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK-KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 481 KESDAMSTQDQHVLFGKFAQII--QEKEVEIDQLNEQVTKLQQQLKittDNKVIEEKNELIRDLETQIECLMSDQECVKR 558
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVinDSKEMEDSAIKEVADSKNMQLE---EADAFEKHKFNKNNENGEDGNKEADFNKEKD 1875
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1825597415 559 NREEEIEQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDV 605
Cdd:PTZ00121 1876 LKEDDEEEIEEADEIEKIDKDDIEREIP-NNNMAGKNNDIIDDKLDK 1921
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ... |
193-978 |
8.19e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.67 E-value: 8.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 193 RQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQA 272
Cdd:pfam02463 205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 273 LEKQLEKMRKFLdeqaidreherdvfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKcSELLLSKEQLQR 352
Cdd:pfam02463 285 EEELKLLAKEEE--------------ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEI-EELEKELKELEI 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 353 DIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRkhfgaveakpELSLEVQLQAERDAIDRKEKEITNLEEQLEQFRE 432
Cdd:pfam02463 350 KREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER----------LSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 433 ELENKNEEvqqlhmqlEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDamstqdqhvlfgkfaqIIQEKEVEIDQL 512
Cdd:pfam02463 420 LLKEEKKE--------ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD----------------ELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 513 NEQVTKLQQQLKittdnkvieekneliRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSL 592
Cdd:pfam02463 476 ETQLVKLQEQLE---------------LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 593 SEEADSlkhqlDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDH 672
Cdd:pfam02463 541 YKVAIS-----TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 673 LSKDKPELEVVLTEDALKSLENQTYFKSFEenGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQ 752
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKE--SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEE 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 753 KKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELGSDISALTLRISELESQVVE 832
Cdd:pfam02463 694 ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 833 MHTSLILEKEQVEIAEKNVLEKE-KKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRA 911
Cdd:pfam02463 774 KELAEEREKTEKLKVEEEKEEKLkAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415 912 ESVATK----AELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLSILEKEDETEVQESKK 978
Cdd:pfam02463 854 EELERLeeeiTKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
82-647 |
8.35e-08 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 57.80 E-value: 8.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 82 SLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIID 161
Cdd:COG1196 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 162 RLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVE---------------------QQLLQETEKLMKEK 220
Cdd:COG1196 478 RLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAelikvkekyetaleaalgnrlQAVVVENEEVAKKA 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 221 LEV--QCQAEKVRD---DLQKQVKALEIDVEEQV----SRFIELEQE---------KNTELMDLRQQNQALEKQLEKMRK 282
Cdd:COG1196 558 IEFlkENKAGRATFlplDRIKPLRSLKSDAAPGFlglaSDLIDFDPKyepavrfvlGDTLVVDDLEQARRLARKLRIKYR 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 283 F--LD-----------------EQAIDREHERDVFQQEIQKLEQQLKvvPRFQPISEHQtREVEQLANHLKEKTDKCSEL 343
Cdd:COG1196 638 IvtLDgdlvepsgsitggsrnkRSSLAQKRELKELEEELAELEAQLE--KLEEELKSLK-NELRSLEDLLEELRRQLEEL 714
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 344 LLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDR--KHFGAVEAKPE--LSLEVQLQAERDAIDRKEKE 419
Cdd:COG1196 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERleELEEELESLEEalAKLKEEIEELEEKRQALQEE 794
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 420 ITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAmSTQDQHVLFGKFA 499
Cdd:COG1196 795 LEELEEELEEAERRLDALERELESLEQRRERLEQE----IEELEEEIEELEEKLDELEEELEELEK-ELEELKEELEELE 869
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 500 QIIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNE---------- 569
Cdd:COG1196 870 AEKEELEDELKELEEEKEELEEELRELESE--LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEeyedtletel 947
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 570 --VIEKLQQELANIGQktsMNAHSLsEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFS 647
Cdd:COG1196 948 erEIERLEEEIEALGP---VNLRAI-EEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFS 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1370-1661 |
8.63e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 8.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1370 SSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRS 1449
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1450 EER------DKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGR----NLELQVLLES 1519
Cdd:TIGR02168 746 EERiaqlskELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1520 EKVRIREMSSTLDRERELHAQLQSSDGTGQSrpplpSEDLLKELQKQLEEKHSRIVELLNEtekykldslqtRQQMEKDR 1599
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEALLNE-----------RASLEEAL 889
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1825597415 1600 QVHRKTLQTEQEantegqkKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:TIGR02168 890 ALLRSELEELSE-------ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
90-633 |
8.67e-08 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 57.46 E-value: 8.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 90 QTELMRESFRQKQEATES-LKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELL 168
Cdd:COG0419 222 QEEQEEEELEQEIEALEErLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 169 CASNRLQELEAEQQQIQEERELLSRQKEAMKAeagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQ 248
Cdd:COG0419 302 ELEEELEGLRALLEELEELLEKLKSLEERLEK-----LEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 249 VSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHErdvfQQEIQKLEQQLKVVPRfqpiSEHQTREVEQ 328
Cdd:COG0419 377 LEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEEL----ERELEELEEEIKKLEE----QINQLESKEL 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 329 LANHLKEKTDKCSELLLSkeqlqRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQA 408
Cdd:COG0419 449 MIAELAGAGEKCPVCGQE-----LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLEL 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 409 ERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMST 488
Cdd:COG0419 524 EEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 489 QdqhvLFGKFAQIiqEKEVEIDQLNEQVTKLQQQLKITTDNKvieEKNELIRDLETQIECLMSDQECVKRNREEEIEQLN 568
Cdd:COG0419 604 E----LEERLSQL--EELLQSLELSEAENELEEAEEELESEL---EKLNLQAELEELLQAALEELEEKVEELEAEIRREL 674
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 569 EVIEKLQQELANIGqktsmNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKE 633
Cdd:COG0419 675 QRIENEEQLEEKLE-----ELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKE 734
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
126-661 |
2.13e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 126 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQEleaeqqqiqeerellsrqkeaMKAEAGPV 205
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ---------------------LKSEISDL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 206 EQQLLQETEKLMKEKLEVQcqaEKVRDDLQKQVKaleiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfld 285
Cdd:TIGR04523 301 NNQKEQDWNKELKSELKNQ---EKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN--- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 286 eQAIDREHERDVFQQEIQKLEQQLKVVprfqpisEHQTREVEQLAnhlKEKTDKCSELLLSKEQLQRDIQERNEEIEKLE 365
Cdd:TIGR04523 371 -EIEKLKKENQSYKQEIKNLESQINDL-------ESKIQNQEKLN---QQKDEQIKKLQQEKELLEKEIERLKETIIKNN 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 366 FRVRELEQALLVSADTFQKVEDRKhfgaveakpelslevqlQAERDAIDRKEKEITNLEEQLEQFREELENKNEEvqqlH 445
Cdd:TIGR04523 440 SEIKDLTNQDSVKELIIKNLDNTR-----------------ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE----L 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 446 MQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKesdamstqdqhvlfgkfaqiiqEKEVEIDQLNEQVTKLQQQLKI 525
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKK----------------------EKESKISDLEDELNKDDFELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 526 TTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDV 605
Cdd:TIGR04523 557 ENLEKEIDEKNKEIEELKQTQKSLKKKQE----EKQELIDQKEKEKKDLIKEIEEKEKKIS----SLEKELEKAKKENEK 628
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415 606 VIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLtqelfsLKRERESVEKIQSI 661
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI------IKKIKESKTKIDDI 678
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
122-467 |
2.25e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 2.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 122 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQqqiqeerELLSRQKEAMKAE 201
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI-------EELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 202 AGPVEQQLLQEteklmkeklevqcQAEKVRDDLQKqvkaLEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR 281
Cdd:TIGR02169 781 LNDLEARLSHS-------------RIPEIQAELSK----LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 282 KfLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisEHQTrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEI 361
Cdd:TIGR02169 844 D-LKEQIKSIEKEIENLNGKKEELEEELE---------ELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 362 EKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEvQLQAERdaiDRKEKEITNLEE----QLEQFREELENK 437
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAEL---QRVEEEIRALEPvnmlAIQEYEEVLKRL 988
|
330 340 350
....*....|....*....|....*....|
gi 1825597415 438 NeEVQQLHMQLEIQKKESTTRLQELEQENK 467
Cdd:TIGR02169 989 D-ELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
429-657 |
3.21e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 429 QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVE 508
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-----KLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 509 IDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECL--MSDQECVkRNREEEIEQLNEVIEKLQQELANIGQKTS 586
Cdd:TIGR02169 746 LSSLEQEIENVKSELK--ELEARIEELEEDLHKLEEALNDLeaRLSHSRI-PEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 587 ---MNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 657
Cdd:TIGR02169 823 rltLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
144-658 |
4.02e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 4.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 144 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQeleaEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEV 223
Cdd:PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 224 QCQAEKVRDDLQKQVKALE-IDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEI 302
Cdd:PRK03918 276 EELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 303 QKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL-LSKEQLQRDIQERNEEIEKLEFRVRELEQAL--LVSA 379
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEEIEEEISKITARIGELKKEIKELKKAIeeLKKA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 380 DTFQKVEDRKhfgaVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELE---NKNEEVQQLHMQLE----IQK 452
Cdd:PRK03918 435 KGKCPVCGRE----LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlKKESELIKLKELAEqlkeLEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 453 KESTTRLQELEQENKLFKDDMEKLG-----LAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKL------QQ 521
Cdd:PRK03918 511 KLKKYNLEELEKKAEEYEKLKEKLIklkgeIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 522 QLKITTDNKVIEEKNELiRDLETQIECLMSDQECVKRNREEEIEQLNEV---IEKLQQELANIGQKTSMNAH-SLSEEAD 597
Cdd:PRK03918 591 EERLKELEPFYNEYLEL-KDAEKELEREEKELKKLEEELDKAFEELAETekrLEELRKELEELEKKYSEEEYeELREEYL 669
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415 598 SLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKEtnfkMNQLTQELFSLKRERESVEKI 658
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE----REKAKKELEKLEKALERVEEL 726
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
232-543 |
4.22e-07 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 55.03 E-value: 4.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 232 DDLQKQVKAL--EIDVEEQVSRFIELEQEK-NTELMDLRQQNQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEQQ 308
Cdd:COG4372 77 DDIRPQLRALrtELGTAQGEKRAAETEREAaRSELQKARQEREAVRQELAAARQ-----------NLAKAQQELARLTKQ 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 309 lkvvprfqpiSEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfqkvEDR 388
Cdd:COG4372 146 ----------AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQ------------EAQ 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 389 khfgaveakpelslevQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL-----EIQKKESttRLQELE 463
Cdd:COG4372 204 ----------------NLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIaaraeQIRERER--QLQRLE 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 464 QENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLE 543
Cdd:COG4372 266 TAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRRSPRRGRRQRP 345
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
1302-1636 |
4.67e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 55.49 E-value: 4.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1302 RRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKS 1381
Cdd:COG1196 195 LEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1382 ELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEErDKEELEDLK 1461
Cdd:COG1196 275 ELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET-LLEELEQLL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1462 FSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMlydAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQL 1541
Cdd:COG1196 354 AELEEAKEELEEKLSALLEELEELFEALREELAELE---AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1542 QSSDGTGQSRpPLPSEDLLKELQKQLEEKHSRIVElLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMH 1621
Cdd:COG1196 431 EAELEELQTE-LEELNEELEELEEQLEELRDRLKE-LERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
|
330
....*....|....*
gi 1825597415 1622 ELQSKVEDLQRQLEE 1636
Cdd:COG1196 509 ALESGLPGVYGPVAE 523
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
347-695 |
5.03e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 55.11 E-value: 5.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 347 KEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfqkVEDRKHFGAVEAKPELSLEVQ-LQAERDAI----DRKEKEIT 421
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNE-----------LHEKQKFYLRQSVIDLQTKLQeMQMERDAMadirRRESQSQE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 422 NLEEQLEQFREELEN----KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGK 497
Cdd:pfam15921 142 DLRNQLQNTVHELEAakclKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTIHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 498 FAQIIQEKEVEIDQLNEQVTKLQQQ---LKITTDNKVieekNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKL 574
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQleaLKSESQNKI----ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 575 QQELANIGQ----KTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL-- 648
Cdd:pfam15921 298 QSQLEIIQEqarnQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLdd 377
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 649 ----------KRERE-SVEKIQSI----PENSVNVAIDHLSK--DKPELEVVLTEDALKSLENQ 695
Cdd:pfam15921 378 qlqklladlhKREKElSLEKEQNKrlwdRDTGNSITIDHLRRelDDRNMEVQRLEALLKAMKSE 441
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
1280-1586 |
5.72e-07 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 55.11 E-value: 5.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1280 EQRIQEQGVEYQAAMECLQKADRRslLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQML-------EMQ 1352
Cdd:COG1196 224 ELELALLLAKLKELRKELEELEEE--LSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLelkeeieELE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1353 VELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKS 1432
Cdd:COG1196 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1433 RELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYD---AQLSEEQGR 1509
Cdd:COG1196 382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEeleEQLEELRDR 461
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1825597415 1510 NLELQVLLESEKVRIREMSSTLDRERELHAQLQSSDGTGQsrpplPSEDLLKELQKQLEEKHSRIVELLNETEKYKL 1586
Cdd:COG1196 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ-----GVRAVLEALESGLPGVYGPVAELIKVKEKYET 533
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
196-544 |
7.36e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 54.72 E-value: 7.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 196 EAMKAEA-GPVEQQL--LQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEI------DVEEQVSRFIELEQEK------- 259
Cdd:pfam15921 436 KAMKSECqGQMERQMaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmtleSSERTVSDLTASLQEKeraieat 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 260 NTELMDLRQQnqaLEKQLEKMRKFLDEQaidrEHERDVfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANhlkEKTDK 339
Cdd:pfam15921 516 NAEITKLRSR---VDLKLQELQHLKNEG----DHLRNV-QTECEALKLQMAEKDKVIEILRQQIENMTQLVG---QHGRT 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 340 CSELLLSKEQLQRDIQERNEEIEKLEF-------RVRELEQAllVSADTFQKVEdrkhfgAVEAKPELSLEVQ-LQAERD 411
Cdd:pfam15921 585 AGAMQVEKAQLEKEINDRRLELQEFKIlkdkkdaKIRELEAR--VSDLELEKVK------LVNAGSERLRAVKdIKQERD 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 412 AIDRKEK----EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTrlqELEQENKLFKDDMEKLGLAIKESDAMS 487
Cdd:pfam15921 657 QLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDGHAMKVAMGMQ 733
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1825597415 488 TQdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNK--VIEEKNELIRDLET 544
Cdd:pfam15921 734 KQ------------ITAKRGQIDALQSKIQFLEEAMTNANKEKhfLKEEKNKLSQELST 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
90-394 |
1.92e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 90 QTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLavelskaEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLC 169
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL-------EAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 170 ASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQ----------ETEKLMKEKLEVQCQAEKVRDDLQKQVK 239
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEleelieelesELEALLNERASLEEALALLRSELEELSE 901
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 240 ALEiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAID-----------REHERDVFQQEIQKLEQQ 308
Cdd:TIGR02168 902 ELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleeaealenkIEDDEEEARRRLKRLENK 980
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 309 LKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLeFRvreleqallvsaDTFQKVedR 388
Cdd:TIGR02168 981 IK---ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER-FK------------DTFDQV--N 1042
|
....*.
gi 1825597415 389 KHFGAV 394
Cdd:TIGR02168 1043 ENFQRV 1048
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
205-656 |
2.37e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 428520 [Multi-domain] Cd Length: 660 Bit Score: 52.81 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 205 VEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALeIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFL 284
Cdd:pfam05557 14 LQNEKKQMELEHKRARIELERKASALARQLERESDRN-QELQKRIRLLEKREAEAEEALREQAELNRLKKKNLEALNKKL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 285 DEQAIDREHERDV----------FQQEIQKLEQQLKvvprfqpiseHQTREVEQLANHLKEKTDKCSELllskEQLQRDI 354
Cdd:pfam05557 93 NEKESQLADAREVisclknelseLRRQIQRQELELS----------STNSELEELQERLDLQKAKAQEA----EQLRQNL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 355 QERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKhfGAVEAKPELSLEVQLQAERDAIDRKEKEITN-LEEQLEQFREE 433
Cdd:pfam05557 159 EAQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSK--SELARIPELERELERLREHNKHLNENIENKLlLKEEVEDLKRK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 434 LEnKNEEVQQLHMQLEIQKKESTTRLQELEqenKLFKDDmeklGLAIKESDAMSTQDQHVLFG-------KFAQIIQEKE 506
Cdd:pfam05557 237 LE-REEGYREELATLELEKEKLEQELKSWE---KLAQDT----GLNLRSPEDLSRRIEQLQQReitlkeeNSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 507 VEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE----------------EEIEQLNEV 570
Cdd:pfam05557 309 LEKAQRELEQELAQYLKNIEDLNKKLKRHKALVRRLQRRVLLLTKERDGMRAILEsydkeltpsnyspqllERIEEAEDM 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 571 IEKLQQELANIGQKTSMnahsLSEEADSLKHQLDVVIAEKLALEQQVETAneEMTFMKNVLKETNFKMNQLTQELFSLKR 650
Cdd:pfam05557 389 TQDMQAHNEEMEAQLSV----AEEELGGYKQQATTLERELQALRQQESLA--DPSYSKEEVDSLRRKLETLEAERQRLRE 462
|
....*.
gi 1825597415 651 ERESVE 656
Cdd:pfam05557 463 QKNELE 468
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-647 |
2.76e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 254 ELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQ----L 329
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkeL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 330 ANHLKEKTDKCSELLLSKEQLQRD-----IQERNEEIEKLEFRVRELEQALlvsaDTFQKVEDRKHFgaveAKPELSLEV 404
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALNDLEARlshsrIPEIQAELSKLEEEVSRIEARL----REIEQKLNRLTL----EKEYLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 405 Q-LQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkkestTRLQELEQEnklfKDDMEKLGLAIKES 483
Cdd:TIGR02169 836 QeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE-------SRLGDLKKE----RDELEAQLRELERK 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 484 damstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQIECLMSdqecvkrnreee 563
Cdd:TIGR02169 905 ------------------IEELEAQIEKKRKRLSELKAKLEALEEE--LSEIEDPKGEDEEIPEEELS------------ 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 564 IEQLNEVIEKLQQELANIGQkTSMNAHSLSEEA----DSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKETNFKMN 639
Cdd:TIGR02169 953 LEDVQAELQRVEEEIRALEP-VNMLAIQEYEEVlkrlDELKEKRAKLEEERKAILERIEEYEKK---KREVFMEAFEAIN 1028
|
....*...
gi 1825597415 640 QLTQELFS 647
Cdd:TIGR02169 1029 ENFNEIFA 1036
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
83-800 |
3.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 83 LEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQL--AVELSKAEGVIDGYADEKTLFERQIQEktdiI 160
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAARKAEEERKAEE----A 1217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 161 DRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQvKA 240
Cdd:PTZ00121 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE----EARMAHFARRQAAIKAEEARKADELKKAEEKK-KA 1292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 241 LEIDVEEQVSRFIELEQ--EKNTELMDLRQQNQALEKQLEKMRKfldeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPI 318
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKkaEEAKKADEAKKKAEEAKKKADAAKK----KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 319 SEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDiQERNEEIEKLEFRVRELEQAlLVSADTFQKVEDRKHfGAVEAKP 398
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED-KKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKK-KAEEAKK 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 399 ELSLEVQLQAERDAIDRKEK-----EITNLEEQLEQFR--EELENKNEEVQQLHMQLEiQKKESTTRLQELEQ-ENKLFK 470
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKaeeakKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAK-KAAEAKKKADEAKKaEEAKKA 1524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 471 DDMEKLGLAIKESDAMSTQDQHvlfgKFAQIIQEKEVeidQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLE-TQIECL 549
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKK----KADELKKAEEL---KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEeARIEEV 1597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 550 MSDQECVKRNREEEI----------EQLN--EVIEKLQQELANIGQKTSMNAHSLSEEADSL---------KHQLDVVIA 608
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAkkaeeakikaEELKkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENkikaaeeakKAEEDKKKA 1677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 609 EKLALEQQVETANEEMTFMKnvlKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDA 688
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKE---AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 689 LKsleNQTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKK--IVNLQK--IVEE 764
Cdd:PTZ00121 1755 EK---KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlVINDSKemEDSA 1831
|
730 740 750
....*....|....*....|....*....|....*.
gi 1825597415 765 KVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTN 800
Cdd:PTZ00121 1832 IKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
1282-1661 |
5.61e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 51.68 E-value: 5.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1282 RIQEQGVEYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDR 1361
Cdd:COG0419 182 EAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1362 ATELQEQLSSEKMVVAELKSELAQTKLELETtLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEK 1441
Cdd:COG0419 262 ESLELEALKIREEELRELERLLEELEEKIER-LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1442 EKAKLGRSEERDKE----------ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNL 1511
Cdd:COG0419 341 LESELEELAEEKNElaklleerlkELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1512 ELQVLLESEKVRIREMSSTLDRERELHAQLQSSDGTGqSRPPLPSEDLLKELQKQLEEKHSRIVELLNETEKYKLDSLQT 1591
Cdd:COG0419 421 ELERELEELEEEIKKLEEQINQLESKELMIAELAGAG-EKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAEL 499
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 1592 RQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEE-----KRQQVYKLDLEGQRLQGIMQEFQKQ 1661
Cdd:COG0419 500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEEleelkEKLQLQQLKEELRQLEDRLQELKEL 574
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
348-1004 |
5.71e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 223496 [Multi-domain] Cd Length: 908 Bit Score: 51.68 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 348 EQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQkvEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQL 427
Cdd:COG0419 174 ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE--EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 428 EQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKEsdamstqdqhvlfgkfAQIIQEKEV 507
Cdd:COG0419 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEE----------------LEGLRALLE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 508 EIDQLNEQVTKLQQQL-KITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKts 586
Cdd:COG0419 316 ELEELLEKLKSLEERLeKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE-- 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 587 mnahsLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKI----QSIP 662
Cdd:COG0419 394 -----LKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCpvcgQELP 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 663 ENSVNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEEngkgsIINLETRLLQLESTVSAKDLELTQCYKQIKDMQE 742
Cdd:COG0419 469 EEHEKELLELYELELEELEEELSREKEEAELREEIEELEKE-----LRELEEELIELLELEEALKEELEEKLEKLENLLE 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 743 qgqfETEMLQKKIVNLQKIVEEKVAAALVSQIQlEAVQEYAKFCQDNQTISSEPERTN--IQNLNQL--REDELGSDISA 818
Cdd:COG0419 544 ----ELEELKEKLQLQQLKEELRQLEDRLQELK-ELLEELRLLRTRKEELEELRERLKelKKKLKELeeRLSQLEELLQS 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 819 LTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKtttelfhsnE 898
Cdd:COG0419 619 LELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE---------E 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 899 ESGFFNELEALRAESVATKAELASYKEKAEKLQEELlvkeTNMTSLQKDLSQVRDHLAEAKEklsILEKEDETEVQESKK 978
Cdd:COG0419 690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRK----AELEELKKELEKLEKALELLEE---LREKLGKAGLRADIL 762
|
650 660
....*....|....*....|....*.
gi 1825597415 979 ACMFEPLPIKLSKSIASQTDGTLKIS 1004
Cdd:COG0419 763 RNLLAQIEAEANEILSKLSLNRYDLR 788
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
199-656 |
5.83e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 199 KAEAGPVEQ-----QLLQETEKLMKEKLEVQCQAEKVRDDL----------QKQVKALEIDVEEQVSRFIELEQEKNTEL 263
Cdd:PRK02224 199 KEEKDLHERlngleSELAELDEEIERYEEQREQARETRDEAdevleeheerREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 264 MDLRQQNQALEKQLEKMRKFLDEQAIDR------EHERDVFQQEIQKLEQQLK----VVPRFQPISEHQTREVEQLANHL 333
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDadaeavEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDADDLEERA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 334 KEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFgAVEAKPEL-----SLEVQLQA 408
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE-LREERDELrereaELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 409 ERDAIDRKEK---------------------EITNLEEQLEQFREELENKNEEVQQLHMQLEIQK--KESTTRLQELEQE 465
Cdd:PRK02224 438 ARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 466 nklfKDDMEKLgLAIKESdamstqdqhvlfgkfaqIIQEKEVEIDQLNEQVTKL-----QQQLKITTDNKVIEEKNELIR 540
Cdd:PRK02224 518 ----REDLEEL-IAERRE-----------------TIEEKRERAEELRERAAELeaeaeEKREAAAEAEEEAEEAREEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 541 DLETQIECLMSDQECVKRNRE--EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSlKHQLdvviAEKLAlEQQVE 618
Cdd:PRK02224 576 ELNSKLAELKERIESLERIRTllAAIADAEDEIERLREKREALAELNDERRERLAEKRER-KREL----EAEFD-EARIE 649
|
490 500 510
....*....|....*....|....*....|....*...
gi 1825597415 619 TANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVE 656
Cdd:PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE 687
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1342-1659 |
6.11e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1342 QQKQSQMLEMQVELSSMKDRATELQEQLSSekmvvAELKSELAQTKLELETTLKAQHKHL---------KELEAFRLEVK 1412
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKS-----LERQAEKAERYKELKAELRELELALlvlrleelrEELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1413 DKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKF---SLESQKQRNLQLNLLLEQQKQLLNESQ 1489
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANeisRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1490 QKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTL----DRERELHAQLQSSdgtgqsrpplpsEDLLKELQK 1565
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeeleSRLEELEEQLETL------------RSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1566 QLEEKHSRIVELlnETEKYKLDSLQTRQQMEK---DRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVY 1642
Cdd:TIGR02168 394 QIASLNNEIERL--EARLERLEDRRERLQQEIeelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330
....*....|....*..
gi 1825597415 1643 KLDLEGQRLQGIMQEFQ 1659
Cdd:TIGR02168 472 EAEQALDAAERELAQLQ 488
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ... |
90-817 |
6.93e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 6.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 90 QTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLC 169
Cdd:pfam02463 189 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 170 ASNRLQELEAEQQQIQEERELlsrQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQV 249
Cdd:pfam02463 269 QVLKENKEEEKEKKLQEEELK---LLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 250 SRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVvprfQPISEHQTREVEQL 329
Cdd:pfam02463 346 ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA----QLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 330 ANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgavEAKPELSLEVQLQAE 409
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL----QEQLELLLSRQKLEE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 410 RDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ--LHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMS 487
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 488 TQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKV------IEEKNELIRDLETQIECLMSDQECVKRNRE 561
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvvegILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 562 EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDvVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQL 641
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE-IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINE 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 642 TQELFSLKRERESVEKIQSIPENS--VNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRLLQL 719
Cdd:pfam02463 737 ELKLLKQKIDEEEEEEEKSRLKKEekEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAEL 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 720 ESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERT 799
Cdd:pfam02463 817 LEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEK 896
|
730
....*....|....*...
gi 1825597415 800 NIQNLNQLREDELGSDIS 817
Cdd:pfam02463 897 EEKKELEEESQKLNLLEE 914
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
271-480 |
9.82e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227278 [Multi-domain] Cd Length: 420 Bit Score: 50.49 E-value: 9.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 271 QALEKQLEKMRKFLDEQaidrEHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREveqLANHLKEKTDKCSELLLSKEQL 350
Cdd:COG4942 34 AADDKQLKQIQKEIAAL----EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE---TADDLKKLRKQIADLNARLNAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 351 QRDIQERNEEIEKL---EFRVRELEQ-ALLVSADTFQK-VEDRKHFGAV-----EAKPELSLE-VQLQAERDAIDRKEKE 419
Cdd:COG4942 107 EVQEREQRRRLAEQlaaLQRSGRNPPpALLVSPEDAQRsVRLAIYYGALnparaERIDALKATlKQLAAVRAEIAAEQAE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415 420 ITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 480
Cdd:COG4942 187 LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
191-375 |
1.01e-05 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 50.41 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 191 LSRQKEAMKAEAGPVEQQLLQ---ETEKLMKEKLEVQCQAEKVRDDLqKQVKALEIDVEEQVSRFIELEQEKNTELMDLR 267
Cdd:COG4372 79 IRPQLRALRTELGTAQGEKRAaetEREAARSELQKARQEREAVRQEL-AAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 268 QQNQALEKQLEKM---RKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL 344
Cdd:COG4372 158 EQRRQLEAQAQSLqasQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
|
170 180 190
....*....|....*....|....*....|.
gi 1825597415 345 LSKEQLQRDIQERNEEIEKLEFRVRELEQAL 375
Cdd:COG4372 238 AQISQKAQQIAARAEQIRERERQLQRLETAQ 268
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
298-625 |
1.26e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 223571 [Multi-domain] Cd Length: 557 Bit Score: 50.29 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 298 FQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKtdkCSELllskEQLQRDIQERNEEIEKLEFRVRELEqallv 377
Cdd:COG0497 131 EHQSLLKPELQRQLLDAFAGLEELAQEAYQEAYQAWKQA---RREL----EDLQEKERERAQRADLLQFQLEELE----- 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 378 sadtfqkvedrkhfgavEAKPELSLEVQLQAERDAIDRKEKeitnLEEQLEQFREELENKNEEVQQLHmqleiQKKESTT 457
Cdd:COG0497 199 -----------------ELNLQPGEDEELEEERKRLSNSEK----LAEAIQNALELLSGEDDTVSALS-----LLGRALE 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 458 RLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfgkfaqiiQEKEVEIDQLNEQVTKLQQQLKITTDNKV-IEEKN 536
Cdd:COG0497 253 ALEDLSEYDGKLSELAELLEEALYELEEASEELRAYL--------DELEFDPNRLEEVEERLFALKSLARKYGVtIEDLL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 537 ELIRDLETQIECLmsdqecvkRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEE-ADSLKHQLDVVIAEKLALEQ 615
Cdd:COG0497 325 EYLDKIKEELAQL--------DNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKElEKEVTAELKALAMEKARFTV 396
|
330
....*....|
gi 1825597415 616 QVETANEEMT 625
Cdd:COG0497 397 ELKPLEESPT 406
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
214-672 |
1.48e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 214 EKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLR-QQNQALEKQLEKMRKFLDEQAIDRE 292
Cdd:pfam12128 397 DKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKlRLNQATATPELLLQLENFDERIERA 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 293 HE----RDVFQQEIQKLEQQLKvvPRFQPISEHQTREvEQLANHLKEKTDKCSELLLSK-----EQLQRDIQERNEEIEK 363
Cdd:pfam12128 477 REeqeaANAEVERLQSELRQAR--KRRDQASEALRQA-SRRLEERQSALDELELQLFPQagtllHFLRKEAPDWEQSIGK 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 364 LefrvreLEQALLVSADTFQKVED------------RKHFGAVEAKPELSLEVQLQAERD----AIDRKEKEITNLEEQL 427
Cdd:pfam12128 554 V------ISPELLHRTDLDPEVWDgsvggelnlygvKLDLKRIDVPEWAASEEELRERLDkaeeALQSAREKQAAAEEQL 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 428 EQFREELEN-------------------------KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKE 482
Cdd:pfam12128 628 VQANGELEKasreetfartalknarldlrrlfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 483 -----SDAMSTQDQHV---LFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNEL-----IRDLETQIECL 549
Cdd:pfam12128 708 qkreaRTEKQAYWQVVegaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAklkreIRTLERKIERI 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 550 MSDQECVKR--------------NREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAE------ 609
Cdd:pfam12128 788 AVRRQEVLRyfdwyqetwlqrrpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENlrglrc 867
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1825597415 610 ------KLALEQQVETANEEMTFMKNVLKEtnfkmnqltqelFSLKRERESvEKIQSIPENSVNVAIDH 672
Cdd:pfam12128 868 emsklaTLKEDANSEQAQGSIGERLAQLED------------LKLKRDYLS-ESVKKYVEHFKNVIADH 923
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
207-456 |
1.77e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227278 [Multi-domain] Cd Length: 420 Bit Score: 49.34 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEID---VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKF 283
Cdd:COG4942 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEiasLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRR 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 284 LDEQ-AIDREHERDVFQQEIQKLEQQLKVVpRFQPISEHQTREVEQLANHLKEktdkcsELLLSKEQLQRDIQERnEEIE 362
Cdd:COG4942 117 LAEQlAALQRSGRNPPPALLVSPEDAQRSV-RLAIYYGALNPARAERIDALKA------TLKQLAAVRAEIAAEQ-AELT 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 363 KLEFRVRELEQALLvsadtfQKVEDRKhfgaveaKPELSLEVQLQAERDAI-------DRKEKEITNLEEQLEQFREELE 435
Cdd:COG4942 189 TLLSEQRAQQAKLA------QLLEERK-------KTLAQLNSELSADQKKLeelraneSRLKNEIASAEAAAAKAREAAA 255
|
250 260
....*....|....*....|.
gi 1825597415 436 NKNEEVQQLHMQLEIQKKEST 456
Cdd:COG4942 256 AAEAAAARARAAEAKRTGETY 276
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1298-1577 |
2.07e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1298 QKADRRSLLSEIQALHAQMNGRKITLKR-EQESEKPSQEL--LEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKM 1374
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELsdASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1375 VVAELKSELAQTKLELETTLKAQHKHLKELEAF-----RLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLgRS 1449
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1450 EERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSS 1529
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1530 TLDRERELHAQLQSSDGTGQSR------------PPLPSEDLLKELQKQLEEKHSRIVEL 1577
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEElseiedpkgedeEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
235-633 |
3.06e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 235 QKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQAL---------EKQLEKMRKFLDEQAIDREHERDVFQQEIQKL 305
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILaedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEIHDL 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 306 EQQLKVVPRFQpisEHQTREVEQLANHLK-------EKTDKCSELLLSKEQL--------------QRDIQERNEEIEKL 364
Cdd:pfam05483 456 EIQLTAIKTSE---EHYLKEVEDLKTELEkeklkniELTAHCDKLLLENKELtqeasdmtlelkkhQEDIINCKKQEERM 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 365 EFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ 443
Cdd:pfam05483 533 LKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 444 LHMQLEIQKKESTTRLQELeqenKLFKDDMEKLGLAIKESDAmstqdqhvlfgKFAQIIQ--EKEVEIDQLNEQ-VTKLQ 520
Cdd:pfam05483 613 LHQENKALKKKGSAENKQL----NAYEIKVNKLELELASAKQ-----------KFEEIIDnyQKEIEDKKISEEkLLEEV 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 521 QQLKITTDNKVIEEKnelirdlETQIECLMSDQECVKRnREEEIEQLNEVIEKLQQELANIGQKTsmnaHSLSEEADSLK 600
Cdd:pfam05483 678 EKAKAIADEAVKLQK-------EIDKRCQHKIAEMVAL-MEKHKHQYDKIIEERDSELGLYKNKE----QEQSSAKAALE 745
|
410 420 430
....*....|....*....|....*....|...
gi 1825597415 601 HQLDVVIAEKLALEQQVETANEEMTFMKNVLKE 633
Cdd:pfam05483 746 IELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ... |
415-1089 |
3.30e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 415 RKEKEITNLEE------QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMST 488
Cdd:pfam02463 150 MKPERRLEIEEeaagsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 489 QDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLN 568
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 569 EVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL 648
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 649 KRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQtyfkSFEENGKGSIINLETRLLQLESTVSAKDL 728
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE----ESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 729 ELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKI-----------------VEEKVAAALVSQIQLEAVQEYAKFCQDNQT 791
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERsqkeskarsglkvllalIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 792 ISSEPERTN--IQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNE 869
Cdd:pfam02463 546 STAVIVEVSatADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 870 KKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKET----NMTSLQ 945
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILrrqlEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 946 KDLSQVRDHLAEAKEKLSILEKEDETEVQESKKACMFEPLPIKLSKSIASQTDGTLKISSSNQTPQILVKNAGIQINLQS 1025
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 1026 ECSSEEVTEIISQFTEKIEKMQELHAAEILDMESRHISETETLKREHYVAVQLLKEECGTLKAV 1089
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
246-483 |
4.00e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.77 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 246 EEQVSRFIELEQEKNTE-LMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtR 324
Cdd:PRK05771 27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE-------------E 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 325 EVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLE-------------------FRVRE--LEQALLVSADTFQ 383
Cdd:PRK05771 94 ELEKIEKEIKELEEEISEL----ENEIKELEQEIERLEPWGnfdldlslllgfkyvsvfvGTVPEdkLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 384 KVEDRKH-------FGAVEAKPELS--------LEVQLQAER---DAIDRKEKEITNLEEQLEQFREELENKNEEVQQLH 445
Cdd:PRK05771 170 EYISTDKgyvyvvvVVLKELSDEVEeelkklgfERLELEEEGtpsELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1825597415 446 MQ----LEIQKKESTTRLQELEqENKLF-------KDDMEKLGLAIKES 483
Cdd:PRK05771 250 LAlyeyLEIELERAEALSKFLK-TDKTFaiegwvpEDRVKKLKELIDKA 297
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
62-372 |
5.89e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 62 KRNGHILKLISKISLPTPPYSLEH--AKVTQTELMRE-----------SFRQKQEATESLKcQEELRERLHEESRA---R 125
Cdd:pfam17380 237 ERRKESFNLAEDVTTMTPEYTVRYngQTMTENEFLNQllhivqhqkavSERQQQEKFEKME-QERLRQEKEEKAREverR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 126 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQEllcasNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV 205
Cdd:pfam17380 316 RKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIAMEISRMRELERLQMERQQK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 206 EQQLLQETEKLMKEKL----------EVQCQAEKVRDDL----QKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQ 271
Cdd:pfam17380 391 NERVRQELEAARKVKIleeerqrkiqQQKVEMEQIRAEQeearQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 272 ALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-----LEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS 346
Cdd:pfam17380 471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEErkqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEE 550
|
330 340
....*....|....*....|....*.
gi 1825597415 347 KEQLQRDIQERNEEIEKLEFRVRELE 372
Cdd:pfam17380 551 RRRIQEQMRKATEERSRLEAMERERE 576
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1289-1644 |
6.92e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 6.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1289 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQElleynIQQKQSQMLEMQVELSSMKDRATELQEQ 1368
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE-----AAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1369 LSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAfRLEVKDKTDEVhllnDTLASEQKKSREL-QWALEKEKAKLG 1447
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK-AAAAKKKADEA----KKKAEEKKKADEAkKKAEEAKKADEA 1449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1448 RSEERDKEELEDLKFSLESQKQRNL-----QLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQvlLESEKV 1522
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEakkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA--KKADEA 1527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1523 RIREMSSTLDRERELHaQLQSSDGTGQSRPPLPSEDLLKELQKQLEEKHS----RIVELLNETEKYKLDSLQTRQQMEKD 1598
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAE-EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKnmalRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1825597415 1599 RQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVYKL 1644
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
347-468 |
9.19e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 347 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKpelslEVQLQAERDAIDRKEKEITNLEEQ 426
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL------------DRKLELLEKR-----EEELEKKEKELEQKQQELEKKEEE 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1825597415 427 LEQFREELENKNEEVQQL------HMQLEIQKKESTT----RLQELEQENKL 468
Cdd:PRK12704 133 LEELIEEQLQELERISGLtaeeakEILLEKVEEEARHeaavLIKEIEEEAKE 184
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
145-819 |
9.22e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 9.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 145 EKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAM--------KAEAGPVEQQL------L 210
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIaslersI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 211 QETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELE---QEKNTELMDLRQQNQALEKQLEKMRkflDEQ 287
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTeeyAELKEELEDLRAELEEVDKEFAETR---DEL 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 288 AiDREHERDVFQQEIQKLEQQLKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFR 367
Cdd:TIGR02169 388 K-DYREKLEKLKREINELKRELD---RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 368 VRELEQALLVSADTFQKVEDRKHfgavEAKPELSlevQLQAERDAIDRKEKEITNLEE--------------QLEQFREE 433
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELS----KLQRELA---EAEAQARASEERVRGGRAVEEvlkasiqgvhgtvaQLGSVGER 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 434 ------------LEN---KNEEVQQLHMQ------------LEIQKKESTTRLQELEQEN-----------------KLF 469
Cdd:TIGR02169 537 yataievaagnrLNNvvvEDDAVAKEAIEllkrrkagratfLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyePAF 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 470 K---------DDMEkLGLAIKESDAMSTQDQHVL-----------FGKFAQIIQEKE-VEIDQLNEQVTKLQQQL----- 523
Cdd:TIGR02169 617 KyvfgdtlvvEDIE-AARRLMGKYRMVTLEGELFeksgamtggsrAPRGGILFSRSEpAELQRLRERLEGLKRELsslqs 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 524 KITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE---EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSE-EADSL 599
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEklkERLEELEEDLSSLEQEIENVKSELKELEARIEElEEDLH 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 600 KHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKiqsipensvnvAIDHLskdkpE 679
Cdd:TIGR02169 776 KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK-----------EIQEL-----Q 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 680 LEVVLTEDALKSLENQtyfksfEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGqfetEMLQKKIVNLQ 759
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKE------IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL----RELERKIEELE 909
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415 760 KIVEEKVAAALVSQIQLEAVQEYAKFCQDN-QTISSEPERTNIQNLNQLREDELGSDISAL 819
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEELSEIEDPkGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1428-1660 |
9.40e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1428 EQKKSRELQWALEKEKAKLGRSEERDKE-----ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQ 1502
Cdd:pfam17380 305 KEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQ 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1503 LSEEQGRNLELQVLLESEKVRIREMsstlDRERELHAQLQSSDGTGQSRpplpsEDLLKELQKQLEEKHSRivellnETE 1582
Cdd:pfam17380 385 MERQQKNERVRQELEAARKVKILEE----ERQRKIQQQKVEMEQIRAEQ-----EEARQREVRRLEEERAR------EME 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1583 KYKLDSLQTRQQMEKDRQ--VHRKTLQTEQEANTEGQKKMHELQSKVedLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQK 1660
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQqeEERKRKKLELEKEKRDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKLLEKEMEERQK 527
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ... |
142-874 |
1.12e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 142 YADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGpvEQQLLQETEKLMKEKL 221
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELK--LLAKEEEELKSELLKL 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 222 EVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQN----QALEKQLEKMRKFLDEQAIDREHERDV 297
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEeeeeEELEKLQEKLEQLEEELLAKKKLESER 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 298 FQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLV 377
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 378 SADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ--LHMQLEIQKKES 455
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAI 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 456 TTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKV---- 531
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvv 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 532 --IEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVvIAE 609
Cdd:pfam02463 626 egILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEI-KKK 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 610 KLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENS------------------------ 665
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEekeeekselslkekelaeerekte 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 666 VNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEE--NGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDM--Q 741
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLliEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEeiT 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 742 EQGQFETEMLQKKIVNLQKIVEEK-VAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTN--IQNLNQLREDELGSDISA 818
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELeSKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKeeAEILLKYEEEPEELLLEE 944
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415 819 LTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQRE 874
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
|
| NtpI |
COG1269 |
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion]; |
219-469 |
1.15e-04 |
|
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
Pssm-ID: 224188 [Multi-domain] Cd Length: 660 Bit Score: 47.36 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 219 EKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNT---ELMDLRQQNQALEKQLEKMRKFLDEQAiDREHER 295
Cdd:COG1269 47 EKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKleaELKSLEEVIKPAEKFSSEVEELTRKLE-ERLSEL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 296 DVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLlskeqlqrdiqERNEEIEKLEFRVRELEQAL 375
Cdd:COG1269 126 DEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALV-----------GVIEDEVALYGENVEASVVI 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 376 LVSADtfqkvedRKHFGAV-EAKPELSLEVQLQAERD-----AIDRKEKEITNLEEQLEQFREELENKNEEVQ----QLH 445
Cdd:COG1269 195 VVAHG-------AEDLDKVsKILNELGFELYEVPEFDggpseLISELEEVIAEIQDELESLRSELEALAEKIAeellAVR 267
|
250 260
....*....|....*....|....
gi 1825597415 446 MQLEIQKKESTTRLQeLEQENKLF 469
Cdd:COG1269 268 EILEIEKALGDVLSK-LARTEYTL 290
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
91-578 |
2.00e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 91 TELMRESFRQKQEATEslkcqeelreRLHEESRAREQLAVELSKAEGVID-GYADEKTLfERQIQEKTDIIDRLEQELLC 169
Cdd:PRK02224 264 RETIAETEREREELAE----------EVRDLRERLEELEEERDDLLAEAGlDDADAEAV-EARREELEDRDEELRDRLEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 170 ASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQlLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQV 249
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE-LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 250 SRFIELEQEKN---TELMDLRQQNQALEKQLEKMRKFLDE-------QAI----------DREHERDVFQQEIQKLEQQL 309
Cdd:PRK02224 412 DFLEELREERDelrEREAELEATLRTARERVEEAEALLEAgkcpecgQPVegsphvetieEDRERVEELEAELEDLEEEV 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 310 KVVPRFQPISEhQTREVEQLANHLKEKTDKCSELLLSKEQlqrDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRK 389
Cdd:PRK02224 492 EEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRE---TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 390 HFGAVEAKpelSLEVQLQAERDAIDRKEK------EITNLEEQLEQFREELENKNEEVQQLHMQLeiqkKESTTRLQELE 463
Cdd:PRK02224 568 EEAREEVA---ELNSKLAELKERIESLERirtllaAIADAEDEIERLREKREALAELNDERRERL----AEKRERKRELE 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 464 QEnklFKDDmeklglAIKESDAMSTQdqhvlfgkFAQIIQEKEVEIDQLNEQVTKLQQQlkITTDNKVIEEKNELiRDLE 543
Cdd:PRK02224 641 AE---FDEA------RIEEAREDKER--------AEEYLEQVEEKLDELREERDDLQAE--IGAVENELEELEEL-RERR 700
|
490 500 510
....*....|....*....|....*....|....*
gi 1825597415 544 TQIECLMSDQECVKrnreEEIEQLNEVIEKLQQEL 578
Cdd:PRK02224 701 EALENRVEALEALY----DEAEELESMYGDLRAEL 731
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1402-1661 |
2.37e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1402 KELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKfslesqkqrnlqlnllleqq 1481
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEI----EKEIEQLEQEEEKLKERLEELE-------------------- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1482 kqllnESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERelhaqlqssdgtgqsrpplpSEDLLK 1561
Cdd:TIGR02169 744 -----EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--------------------IPEIQA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1562 ELQKqLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQV 1641
Cdd:TIGR02169 799 ELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
250 260
....*....|....*....|
gi 1825597415 1642 YKLDLEGQRLQGIMQEFQKQ 1661
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQ 897
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
240-525 |
2.47e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 240 ALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREH--ERDVFQQEIQKLEQQLKvvprf 315
Cdd:PRK04863 830 AFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSalNRLLPRLNllADETLADRVEEIREQLD----- 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 316 qpisehqtrEVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLEFRVRELEQAL-LVSADTF---QKVEDRKHF 391
Cdd:PRK04863 905 ---------EAEEAKRFVQQHGNALAQL----EPIVSVLQSDPEQFEQLKQDYQQAQQTQrDAKQQAFaltEVVQRRAHF 971
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 392 GAVEAKPELSLEVQLQaerDAIDRKEKEitnLEEQLEQFREELENKNEEVQQLHmQLEIQKKESTTRLQELEQEnklFKD 471
Cdd:PRK04863 972 SYEDAAEMLAKNSDLN---EKLRQRLEQ---AEQERTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQE---LKQ 1041
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 472 DMEKLGLAI---KESDAMSTQDQ-----HVLFGKFAQI---IQEKEVEIDQLNEQVTKLQQQLKI 525
Cdd:PRK04863 1042 ELQDLGVPAdsgAEERARARRDElharlSANRSRRNQLekqLTFCEAEMDNLTKKLRKLERDYHE 1106
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1337-1640 |
2.58e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 426331 [Multi-domain] Cd Length: 1081 Bit Score: 46.31 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1337 LEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLELETTLkaqhkhlkeleafrLEVKDKTD 1416
Cdd:pfam01576 192 LEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAKKEEELQAAL--------------ARLEEETA 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1417 EVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDK---EELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIE 1493
Cdd:pfam01576 258 QKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1494 SQRMLYDAQLSEEQGRNL----ELQVLLESE---KVRIREMSSTLDRER-ELHAQLQSSDGTGQSrpplpSEDLLKELQK 1565
Cdd:pfam01576 338 EETRSHEAQLQEMRQKHTqaleELTEQLEQAkrnKASLEKAKQALESENaELQAELRSLQQAKQD-----SEHKRKKLEG 412
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1825597415 1566 QLEEKHSRivelLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQ 1640
Cdd:pfam01576 413 QLQELQSR----LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQ 483
|
|
| HEC1 |
COG5185 |
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ... |
232-523 |
3.42e-04 |
|
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227512 [Multi-domain] Cd Length: 622 Bit Score: 45.74 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 232 DDLQKQVKALE--IDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLE-KMRKF------LDEQAIDREHERDVFQQEI 302
Cdd:COG5185 274 ANLKTQNDNLYekIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKqKSQEWpgklekLKSEIELKEEEIKALQSNI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 303 QKLEQQLkvvpRFQPIS----EHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVS 378
Cdd:COG5185 354 DELHKQL----RKQGISteqfELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRS 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 379 ADtfQKVEDRKHFgAVEAKPELSLEVQLQAE----------RDAIDRKEKEITNLEEQLEQFREELEN----KNEEVQQL 444
Cdd:COG5185 430 RS--QIGHNVNDS-SLKINIEQLFPKGSGINesikksilelNDEIQERIKTEENKSITLEEDIKNLKHdineLTQILEKL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 445 HMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMStqdqHVLFGKFAQIIQEKEVEIDQ----LNEQVTKLQ 520
Cdd:COG5185 507 ELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLS----KTSILDAEQLVQSTEIKLDElkvdLNRKRYKIH 582
|
...
gi 1825597415 521 QQL 523
Cdd:COG5185 583 KQV 585
|
|
| COG1579 |
COG1579 |
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ... |
404-609 |
3.45e-04 |
|
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];
Pssm-ID: 224495 [Multi-domain] Cd Length: 239 Bit Score: 44.28 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 404 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLglaikes 483
Cdd:COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 484 DAMSTQDQHVLFGKFAQIIQEKEV----EIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIECLMSDQecvkrn 559
Cdd:COG1579 83 SAVKDERELRALNIEIQIAKERINsledELAELMEEIEKLEKE---------IEDLKERLERLEKNLAEAEARL------ 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1825597415 560 rEEEIEQLNEVIEKLQQELANIgqKTSMNAHSLSEEADSLKHQLDVVIAE 609
Cdd:COG1579 148 -EEEVAEIREEGQELSSKREEL--KEKLDPELLSEYERIRKNKKGVGVVP 194
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; |
1376-1681 |
4.44e-04 |
|
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 224117 [Multi-domain] Cd Length: 1163 Bit Score: 45.48 E-value: 4.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1376 VAELKSELAQTKLELETTLKaqhkHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQwalEKEKAKLGRSEERDKE 1455
Cdd:COG1196 167 VSKYKERKEEAERKLERTEE----NLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR---ELELALLLAKLKELRK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1456 ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAqLSEEQGRNLELQVLLESEKVRIREMSSTLDRER 1535
Cdd:COG1196 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE-LQEELLELKEEIEELEGEISLLRERLEELENEL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1536 ELHAQLQSSDgtgqsrpplpsEDLLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTE 1615
Cdd:COG1196 319 EELEERLEEL-----------KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1825597415 1616 GQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQELEREEKRESRRILYQNLNE 1681
Cdd:COG1196 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEE 453
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
354-584 |
4.55e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 354 IQERNEEIEKLEFRVRELEQALlvsaDTFQKVEDRkhfgaveakpelslevQLQAERDAIDRKEKEITNLEEQLEQFREE 433
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQQI----KTYNKNIEE----------------QRKKNGENIARKQNKYDELVEEAKTIKAE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 434 LENKNEEVQQLHMQLEiqkkESTTRLQELEQENKLFKDDMEKLGLAIK-----------------ESDAMS--TQDQHVL 494
Cdd:PHA02562 236 IEELTDELLNLVMDIE----DPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctqqiseGPDRITkiKDKLKEL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 495 FGKFAQI---IQEKEVEIDQLNEQVTKLQQ-QLKITTDNKVIEEKNELIRDLETQIECLMSDqecvKRNREEEIEQLNEV 570
Cdd:PHA02562 312 QHSLEKLdtaIDELEEIMDEFNEQSKKLLElKNKISTNKQSLITLVDKAKKVKAAIEELQAE----FVDNAEELAKLQDE 387
|
250
....*....|....
gi 1825597415 571 IEKLQQELANIGQK 584
Cdd:PHA02562 388 LDKIVKTKSELVKE 401
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
207-848 |
4.60e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 435022 [Multi-domain] Cd Length: 1112 Bit Score: 45.48 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFL-- 284
Cdd:pfam15921 116 QTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILvd 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 285 -DEQAIDREHERDVF-----------------------------------QQEIQKLEQQLKVVPRFQpisEHQTREVEQ 328
Cdd:pfam15921 196 fEEASGKKIYEHDSMstihfrslgsaiskilreldteisylkgrifpvedQLEALKSESQNKIELLLQ---QHQDRIEQL 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 329 LANHLKE---KTDKCSELLLSKEQLQRDI-----QERNE------EIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAV 394
Cdd:pfam15921 273 ISEHEVEitgLTEKASSARSQANSIQSQLeiiqeQARNQnsmymrQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 395 EAKPELS---------------LEVQLQAERDAIDRKEKEITNLEEQ--------------LEQFREELENKNEEVQQLH 445
Cdd:pfam15921 353 LANSELTearterdqfsqesgnLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 446 MQLEIQKKESTTRLQE-----------LEQENKL---FKDDMEKLGLAIKESDA--MSTQDQHVLFGKFAQIIQEKEVEI 509
Cdd:pfam15921 433 ALLKAMKSECQGQMERqmaaiqgknesLEKVSSLtaqLESTKEMLRKVVEELTAkkMTLESSERTVSDLTASLQEKERAI 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 510 DQLNEQVTKLQQQLKITTDN-KVIEEKNELIRDLETQIECLmsdqecvkrnrEEEIEQLNEVIEKLQQELANIGQKTSMN 588
Cdd:pfam15921 513 EATNAEITKLRSRVDLKLQElQHLKNEGDHLRNVQTECEAL-----------KLQMAEKDKVIEILRQQIENMTQLVGQH 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 589 AHSLSeeadslkhqldVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLkrERESVEKIQSIPENSVNV 668
Cdd:pfam15921 582 GRTAG-----------AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL--ELEKVKLVNAGSERLRAV 648
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 669 AIDHLSKDKPELEVVLTEDALKSLENQtyFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFET 748
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSED--YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAM 726
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 749 emlqKKIVNLQKIVEEKVAaalvsqiQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLRED---------ELGSDISAL 819
Cdd:pfam15921 727 ----KVAMGMQKQITAKRG-------QIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQElstvateknKMAGELEVL 795
|
730 740
....*....|....*....|....*....
gi 1825597415 820 TLRISELESQVVEMHTSliLEKEQVEIAE 848
Cdd:pfam15921 796 RSQERRLKEKVANMEVA--LDKASLQFAE 822
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
243-546 |
4.75e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 243 IDVEEQVSRFIELEQEKntelmdLRQQNQALEKQLEKMRKfLDEQAIDREHERDvfQQEIQKLEQQLKVVPRFQPIS--- 319
Cdd:pfam17380 284 VSERQQQEKFEKMEQER------LRQEKEEKAREVERRRK-LEEAEKARQAEMD--RQAAIYAEQERMAMERERELErir 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 320 -EHQTREVEQL-ANHLKEKTDKCSELllskEQLQRDIQERNEEI-EKLEF-RVRELEQALLVSADTFQKVEDRKHFGAVE 395
Cdd:pfam17380 355 qEERKRELERIrQEEIAMEISRMREL----ERLQMERQQKNERVrQELEAaRKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 396 AKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEK 475
Cdd:pfam17380 431 EARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415 476 LGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQI 546
Cdd:pfam17380 511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQI 581
|
|
| COG4372 |
COG4372 |
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]; |
402-579 |
5.22e-04 |
|
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 226809 [Multi-domain] Cd Length: 499 Bit Score: 45.02 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 402 LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIK 481
Cdd:COG4372 79 IRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 482 ESDAMSTQDQHVLFGKfaqiiQEKEVEIDQLNEQVTKLQ-QQLKITTDNKVIEEKNELIRDLETQieclMSDQECVKRNR 560
Cdd:COG4372 159 QRRQLEAQAQSLQASQ-----KQLQASATQLKSQVLDLKlRSAQIEQEAQNLATRANAAQARTEE----LARRAAAAQQT 229
|
170
....*....|....*....
gi 1825597415 561 EEEIEQLNEVIEKLQQELA 579
Cdd:COG4372 230 AQAIQQRDAQISQKAQQIA 248
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1323-1658 |
5.44e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1323 LKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQE---------QLSSEKMVVAELKSELAQTKLELETT 1393
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1394 LKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQ 1473
Cdd:PRK03918 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1474 LNLLLEQQKQLLNESQQKIESQRM-------------LYDAQLSEEQGRNLELQVLLESEKVRiREMSSTLDRERELHAQ 1540
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRIE-KELKEIEEKERKLRKE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1541 LQSSDGTGQSRPPLPSEDLLKELQKQLEEKHSRIV--ELLNETEKY-----KLDSLQTRQQMEKDRQVHRKTLQTEQEan 1613
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKSLKKELEKLEELKKKLA-- 559
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1825597415 1614 tEGQKKMHELQSKVEDLQRQLEEKR-QQVYKLDLEGQRLQGIMQEF 1658
Cdd:PRK03918 560 -ELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEY 604
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ... |
207-465 |
5.45e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 225638 [Multi-domain] Cd Length: 1480 Bit Score: 45.26 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 207 QQLLQETEKLMKEKLEVQCQAEKvrDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDE 286
Cdd:COG3096 812 QRLHQAFSRFIGSHLAVAFEADP--EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADE 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 287 QAIDREHErdvFQQEIQKLEQQLKVVPRFQpiseHQTREVEQLANHLKEKTDKCSELllsKEQLQRDIQerneeieklef 366
Cdd:COG3096 890 SLADRVEE---IRERLDEAQEAARFIQQHG----NTLSKLEPIASVLQSDPEQFEQL---KEDYAQAQQ----------- 948
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 367 RVRELEQALLVSADTFQKvedRKHFGAVEAKPELSLEVQLQAE-RDAIDRKEKEITNLEEQLEQFREELENKNeevqQLH 445
Cdd:COG3096 949 MQRQARQQAFALTEVVQR---RAHFSYSDSAEMLSENSDLNEKlRQRLEQAEAERTRAREQLRQHQAQLSQYN----QVL 1021
|
250 260
....*....|....*....|
gi 1825597415 446 MQLEIQKKESTTRLQELEQE 465
Cdd:COG3096 1022 ASLKSSYDTKKELLNELQQE 1041
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
153-933 |
5.90e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 153 IQEKTDIIDRLEQELLCASN----RLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcQAE 228
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLE-EIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 229 KVRDDLQKQVKALEID-----------VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR---KFLDEQAIDREHE 294
Cdd:TIGR02169 272 QLLEELNKKIKDLGEEeqlrvkekigeLEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLaeiEELEREIEEERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 295 RDVFQQEIQKLEQQLKVVprfqpisehqTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQA 374
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDL----------RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 375 LlvsADTFQKVEDRKhfgavEAKPELslEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLH-----MQLE 449
Cdd:TIGR02169 422 L---ADLNAAIAGIE-----AKINEL--EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEkelskLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 450 IQKKEstTRLQELEQENKLFKDDMEKLGLAIKEsdamstqdqhvLFGKFAQIIQEKE------------------VEIDQ 511
Cdd:TIGR02169 492 LAEAE--AQARASEERVRGGRAVEEVLKASIQG-----------VHGTVAQLGSVGEryataievaagnrlnnvvVEDDA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 512 LNEQVTKLQQQLK----------------------------------ITTDNK------------VIEEKNELIRDLETQ 545
Cdd:TIGR02169 559 VAKEAIELLKRRKagratflplnkmrderrdlsilsedgvigfavdlVEFDPKyepafkyvfgdtLVVEDIEAARRLMGK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 546 IECLMSDQE-------------------CVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVV 606
Cdd:TIGR02169 639 YRMVTLEGElfeksgamtggsraprggiLFSRSEPAELQRLRERLEGLKRELSSLQSELR----RIENRLDELSQELSDA 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 607 IAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKREresvekiqsipensvnvaIDHLSKDKPELEVVLT- 685
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE------------------LKELEARIEELEEDLHk 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 686 -EDALKSLEnQTYFKSFEENGKGSIINLETRLLQLESTVSAKDLELtqcykqikdmqEQGQFETEMLQKKIVNLQKIVEE 764
Cdd:TIGR02169 777 lEEALNDLE-ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL-----------NRLTLEKEYLEKEIQELQEQRID 844
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 765 kvaaalvSQIQLEAVQEYakfcQDNQTISSEPERTNIQNLnQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQV 844
Cdd:TIGR02169 845 -------LKEQIKSIEKE----IENLNGKKEELEEELEEL-EAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 845 EIAEKNVLEKEKKLLELQKLLEgnEKKQREKEKKRSPQDVEVLKTTTELFHSNEEsgffnELEALraESVATKAE----- 919
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELS--EIEDPKGEDEEIPEEELSLEDVQAELQRVEE-----EIRAL--EPVNMLAIqeyee 983
|
890
....*....|....*...
gi 1825597415 920 ----LASYKEKAEKLQEE 933
Cdd:TIGR02169 984 vlkrLDELKEKRAKLEEE 1001
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
151-771 |
7.22e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 7.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 151 RQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELL--SRQKEAMKAEAGPVEQ---------QLLQETEKLMKE 219
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInrARKAAPLAAHIKAVTQieqqaqrihTELQSKMRSRAK 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 220 KLEVQCQAEKVRDDLQKQVKAL----------EIDVEEQVSRFIELEQEKNTE--LMDLRQQNQALEKQLEKMRKFLDEq 287
Cdd:TIGR00618 326 LLMKRAAHVKQQSSIEEQRRLLqtlhsqeihiRDAHEVATSIREISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDI- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 288 aIDREHERDVFQQEIQKLEQQLKVVPRFQpiSEHQTREVEQLANHLKEKTdkcSELLLSKEQLQRDIQERNEEIEKLefr 367
Cdd:TIGR00618 405 -LQREQATIDTRTSAFRDLQGQLAHAKKQ--QELQQRYAELCAAAITCTA---QCEKLEKIHLQESAQSLKEREQQL--- 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 368 vRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAID-----------------RKEKEITNLEEQLEQF 430
Cdd:TIGR00618 476 -QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpgpltrrmqrgeqtyaQLETSEEDVYHQLTSE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 431 RE---ELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLG------------LAIKESDAMSTQDQHVLF 495
Cdd:TIGR00618 555 RKqraSLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSeaedmlaceqhaLLRKLQPEQDLQDVRLHL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 496 GKFAQIIQEKEVEIDQLNEQVTKLQQQ---LKITTDNKVIEEKNELIRD-LETQIECLMSDQECVK------RNREEEIE 565
Cdd:TIGR00618 635 QQCSQELALKLTALHALQLTLTQERVRehaLSIRVLPKELLASRQLALQkMQSEKEQLTYWKEMLAqcqtllRELETHIE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 566 QLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEkLALEQQVETANEEMTFMknvlkeTNFKMNQLTQEL 645
Cdd:TIGR00618 715 EYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKA-RTEAHFNNNEEVTAALQ------TGAELSHLAAEI 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 646 FSLKRERESVEKIQSIPENSVNVAIDHlskdkpELEVVLTEDALKSLENQTYFKSFEENGKgSIINLETRLLQLESTVSA 725
Cdd:TIGR00618 788 QFFNRLREEDTHLLKTLEAEIGQEIPS------DEDILNLQCETLVQEEEQFLSRLEEKSA-TLGEITHQLLKYEECSKQ 860
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1825597415 726 KDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALV 771
Cdd:TIGR00618 861 LAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANV 906
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
394-464 |
1.25e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 1.25e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1825597415 394 VEAKPELsLEVQLQAERDaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQ 464
Cdd:PRK12704 60 LEAKEEI-HKLRNEFEKE-LRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
348-577 |
1.35e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 348 EQLQRDIQERNEEIEKLEFRVRELEQALLV---SADTFQKVEDRKHFGAVEAKPELslevqlQAERDAIDRKEKEITNLE 424
Cdd:smart00787 73 KELKKYISEGRDLFKEIEEETLINNPPLFKeyfSASPDVKLLMDKQFQLVKTFARL------EAKKMWYEWRMKLLEGLK 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 425 EQLEQFREELENKNEEVQQ-------LHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKEsdAMSTQDQHvlfgk 497
Cdd:smart00787 147 EGLDENLEGLKEDYKLLMKelellnsIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE--KLKKLLQE----- 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 498 faqiIQEKEVEIDQLNEQVTKLQQqlkittdnkVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQE 577
Cdd:smart00787 220 ----IMIKVKKLEELEEELQELES---------KIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
315-978 |
1.57e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 315 FQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEfRVRELEQAllvsadtfQKVEDRKHfgAV 394
Cdd:PTZ00121 1081 FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDA--------RKAEEARK--AE 1149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 395 EAKPELSLEVQLQAERDAIDRKEKEITNLEEQLeqfREELENKNEEVQQLHmqlEIQKKESTTRLQELEQENKLFKDDME 474
Cdd:PTZ00121 1150 DAKRVEIARKAEDARKAEEARKAEDAKKAEAAR---KAEEVRKAEELRKAE---DARKAEAARKAEEERKAEEARKAEDA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 475 KLGLAIKESDAMSTQDQhvlfgkfaqiiQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLET--QIECLMSD 552
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAE-----------EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADElkKAEEKKKA 1292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 553 QECVKRNREEEIEQLNEVIE--KLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNV 630
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEeaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 631 LKETNFKMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPEL------EVVLTEDALKSLENQtyfKSFEEN 704
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEakkkaeEKKKADEAKKKAEEA---KKADEA 1449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 705 GKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQfETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAK 784
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 785 FCQDNQTISSEPERTNIQNLNQLREDE---------------LGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEK 849
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEelkkaeekkkaeeakKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 850 NVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEK 929
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1825597415 930 LQEELLVKETNMtslQKDLSQVRDHLAEAKEKLSILEKEDE---TEVQESKK 978
Cdd:PTZ00121 1689 KAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEenkIKAEEAKK 1737
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
86-476 |
1.63e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 86 AKVTQTELMRESFRQKQEATES----LKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIID 161
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEkvkeLKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 162 RLEQ--ELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVE-QQLLQETEKLMKEKLEVQCQAEKVRD---DLQ 235
Cdd:PRK03918 339 RLEElkKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITArigELK 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 236 KQVKALEIDVEEQVS---------RFIELEQEKN------TELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQ 300
Cdd:PRK03918 419 KEIKELKKAIEELKKakgkcpvcgRELTEEHRKElleeytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 301 -----EIQKLEQQLKVVpRFQPISEHQT--REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQ 373
Cdd:PRK03918 499 kelaeQLKELEEKLKKY-NLEELEKKAEeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 374 ALL-VSADTFQKVEDR---------KHFGAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKN---- 438
Cdd:PRK03918 578 ELEeLGFESVEELEERlkelepfynEYLELKDAEKELeREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkys 657
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1825597415 439 ----EEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL 476
Cdd:PRK03918 658 eeeyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
|
| HEC1 |
COG5185 |
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ... |
270-587 |
1.76e-03 |
|
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227512 [Multi-domain] Cd Length: 622 Bit Score: 43.43 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 270 NQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQ 349
Cdd:COG5185 206 IIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 350 LQRDIQERNEEIEKLEFRVRELEQAL--LVSADTFQKVEDRKHFGAVEAKPE--LSLEVQLQAERDAIDRKEKEITNLEE 425
Cdd:COG5185 286 KIQEAMKISQKIKTLREKWRALKSDSnkYENYVNAMKQKSQEWPGKLEKLKSeiELKEEEIKALQSNIDELHKQLRKQGI 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 426 QLEQFRE----------ELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKE-----SDAMSTQD 490
Cdd:COG5185 366 STEQFELmnqerekltrELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQighnvNDSSLKIN 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 491 QHVLFGKFAQIIQEKEVEIDQLNEQVT---------KLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE 561
Cdd:COG5185 446 IEQLFPKGSGINESIKKSILELNDEIQerikteenkSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENE 525
|
330 340
....*....|....*....|....*...
gi 1825597415 562 EEIEQLNEVIEKLQQEL--ANIGQKTSM 587
Cdd:COG5185 526 RELVAQRIEIEKLEKELndLNLLSKTSI 553
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1279-1440 |
1.95e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 429718 [Multi-domain] Cd Length: 488 Bit Score: 42.95 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1279 LEQRIQEQGVEYQAAMECLQKADRRSllSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSM 1358
Cdd:pfam07888 78 LESRVAELKEELRQSREKVEELEEKY--KELSRSGEELAEEKDALLAQRAESEARIRELEEDIKTLTQRVLERETELERM 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1359 KDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWA 1438
Cdd:pfam07888 156 KERVKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEAL 235
|
..
gi 1825597415 1439 LE 1440
Cdd:pfam07888 236 LE 237
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
313-619 |
1.99e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.92 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 313 PRFQPISEHQTREVEQLANHLKEKTDKCSELllskeQLQRDIQERNEEIEKLEFRVRELEQAL--LVSADTfqkvEDRKH 390
Cdd:pfam06160 52 KKWDDIVTKSLPDIEELLFEAEELNDKYRFK-----KAKKALDEIEELLDDIEEDIKQILEELdeLLESEE----KNREE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 391 FGAVEAKPElSLEVQLQAER----DAIDRKEKEITNLEEQLEQFREELENKN-----EEVQQLHMQ---LEIQKKESTTR 458
Cdd:pfam06160 123 VEELKDKYR-ELRKTLLANRfsygPAIDELEKQLAEIEEEFSQFEELTESGDylearEVLEKLEEEtdaLEELMEDIPPL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 459 LQELEQEnklFKDDMEKLGLAIKEsdaMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQqqlkittdnkvIEEKNEL 538
Cdd:pfam06160 202 YEELKTE---LPDQLEELKEGYRE---MEEEGYALEHLNVDKEIQQLEEQLEENLALLENLE-----------LDEAEEA 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 539 IRDLETQIECLMSD--------QECVKRNRE--EEIEQLNEVIEKLQQELANIGQKTSMNAHSLsEEADSLKHQLDVVIA 608
Cdd:pfam06160 265 LEEIEERIDQLYDLlekevdakKYVEKNLPEieDYLEHAEEQNKELKEELERVQQSYTLNENEL-ERVRGLEKQLEELEK 343
|
330
....*....|.
gi 1825597415 609 EKLALEQQVET 619
Cdd:pfam06160 344 RYDEIVERLEE 354
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
207-581 |
2.21e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 43.28 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKalEIDVEEQVSRFIELEQEKNTELMD---LRQQNQALEKQLEKMRKF 283
Cdd:PTZ00440 594 DNIIQQIEELINEALFNKEKFINEKNDLQEKVK--YILNKFYKGDLQELLDELSHFLDDhkyLYHEAKSKEDLQTLLNTS 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 284 LDEQAIDREHERDVFQQEIQKLEQQLkvvprfQPISEHQTREVEQLANHLKEKTDKCSELLLSK-EQLQRDIQERNEEIE 362
Cdd:PTZ00440 672 KNEYEKLEFMKSDNIDNIIKNLKKEL------QNLLSLKENIIKKQLNNIEQDISNSLNQYTIKyNDLKSSIEEYKEEEE 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 363 KLEFRVRELEQALlvsaDTFQKVEDRKHFGAVEAKpelSLEVQLQAERDAIDRKEKEITNleeQLEQFREELENKNEEVQ 442
Cdd:PTZ00440 746 KLEVYKHQIINRK----NEFILHLYENDKDLPDGK---NTYEEFLQYKDTILNKENKISN---DINILKENKKNNQDLLN 815
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 443 QLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDqhvlfgKFAQIIQEKEVEIDQLNeQVTKLQQQ 522
Cdd:PTZ00440 816 SYNILIQKLEAHTEKNDEELKQLLQKFPTEDENLNLKELEKEFNENNQ------IVDNIIKDIENMNKNIN-IIKTLNIA 888
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1825597415 523 LKITTDNK-----VIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANI 581
Cdd:PTZ00440 889 INRSNSNKqlvehLLNNKIDLKNKLEQHMKIINTDNIIQKNEKLNLLNNLNKEKEKIEKQLSDT 952
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1263-1580 |
2.28e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1263 ELTALGTTDAVGLLNCLEQRIQEQGVEYQAAMECLQKADrrSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQ 1342
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELE--EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1343 QKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLN 1422
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1423 DTLASEQKKSRELQ---WALEKEKAKLGRSEERDKEELEDLKFSLESQKQrnlqlnllleqqkqllnesqQKIESQRMLY 1499
Cdd:TIGR02168 386 SKVAQLELQIASLNneiERLEARLERLEDRRERLQQEIEELLKKLEEAEL--------------------KELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1500 DAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQLQSsdgtgqsrpplpSEDLLKELQKQLEEKHSRIVELLN 1579
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA------------RLDSLERLQENLEGFSEGVKALLK 513
|
.
gi 1825597415 1580 E 1580
Cdd:TIGR02168 514 N 514
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ... |
207-523 |
2.32e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 225638 [Multi-domain] Cd Length: 1480 Bit Score: 43.34 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 207 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKqLEKMRKFL-- 284
Cdd:COG3096 354 QADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAA-LERAKELChl 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 285 -DEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKC--SELLLSKEQLQRDIQERN--- 358
Cdd:COG3096 433 pDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELarSEAWDVARELLREGPDQRhla 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 359 EEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKPELSlevqlQAERDAIDRKEKEItnLEEQLEQFREELENKN 438
Cdd:COG3096 513 EQVQPLRMRLSELEQRL------------RQQQSAERLLADFC-----KRQGKNLDAEELEA--LHQELEALIESLSDSV 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 439 EEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKE--VEIDQLNEQV 516
Cdd:COG3096 574 SNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREatVERDELGARK 653
|
....*..
gi 1825597415 517 TKLQQQL 523
Cdd:COG3096 654 NALDEEI 660
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
148-644 |
2.57e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.82 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 148 LFERQIQEktdiIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV-----------------EQQLL 210
Cdd:pfam07111 67 LISRQLQE----LRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLraalagaemvrknleegSQREL 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 211 QETEKLMKEKLEVQCQAEKVR--------DDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQL---EK 279
Cdd:pfam07111 143 EEIQRLHQEQLSSLTQAHEEAlssltskaEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVtlvES 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 280 MRKFLDEQAIDREH--------------------ERDVFQQEIQKLEQQLKVVPRFQPISEHQ-TREVEQLANHLKEKTD 338
Cdd:pfam07111 223 LRKYVGEQVPPEVHsqtwelerqelldtmqhlqeDRADLQATVELLQVRVQSLTHMLALQEEElTRKIQPSDSLEPEFPK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 339 KCSELLLSKE--------QLQRDIQERNEEIEKLEFRVRELEQALLVS----ADTFQKVEDRKHFGAVEAKPELSLEVQL 406
Cdd:pfam07111 303 KCRSLLNRWRekvfalmvQLKAQDLEHRDSVKQLRGQVAELQEQVTSQsqeqAILQRALQDKAAEVEVERMSAKGLQMEL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 407 QAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkkESTTRLQELEQenklfkddmeKLGLAIKESdam 486
Cdd:pfam07111 383 SRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVE----QAVARIPSLSN----------RLSYAVRKV--- 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 487 stqdqHVLFGKFAQIIQEKEVEIDQ--LNEQVTKLQQQLKITTDnKVIEEKNELirDLETQIECLMSDQEcVKRNREE-- 562
Cdd:pfam07111 446 -----HTIKGLMARKVALAQLRQEScpPPPPAPPVDADLSLELE-QLREERNRL--DAELQLSAHLIQQE-VGRAREQge 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 563 -EIEQLNEVIEKLQQE-------LANIGQKTSM---NAHSLSEEADSLKHQLdvVIAEKLALEQQVETANEEMTFMKNVL 631
Cdd:pfam07111 517 aERQQLSEVAQQLEQElqraqesLASVGQQLEVarqGQQESTEEAASLRQEL--TQQQEIYGQALQEKVAEVETRLREQL 594
|
570
....*....|...
gi 1825597415 632 KETNFKMNQLTQE 644
Cdd:pfam07111 595 SDTKRRLNEARRE 607
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
354-627 |
3.08e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 354 IQERNEEIEklEFRVRELEQALLVSADTFQKVedRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEqleqfreE 433
Cdd:PRK05771 33 IEDLKEELS--NERLRKLRSLLTKLSEALDKL--RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEK-------E 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 434 LENKNEEVQQLhmqleiqkkesTTRLQELEQEnklfKDDMEKLG-LAIKESDAMSTQDQHVLFGK-FAQIIQEKEVEIDQ 511
Cdd:PRK05771 102 IKELEEEISEL-----------ENEIKELEQE----IERLEPWGnFDLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 512 LNEQVTKLQQQLK---ITTDNKVIEEKNELIRDLETQI----ECLMSDQecVKRNREEEIEQLNEVIEKLQQELANIGQK 584
Cdd:PRK05771 167 ENVEYISTDKGYVyvvVVVLKELSDEVEEELKKLGFERleleEEGTPSE--LIREIKEELEEIEKERESLLEELKELAKK 244
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1825597415 585 tsmnahslseEADSLKHQLDVVIAEKLALEQQVETANEEMTFM 627
Cdd:PRK05771 245 ----------YLEELLALYEYLEIELERAEALSKFLKTDKTFA 277
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
191-933 |
3.20e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 191 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDdLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQN 270
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQE-LQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 271 QALEKQLEKMRKFLDEqaidREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVeqlanHLKEKTDKcselllskEQL 350
Cdd:pfam05483 162 ETCARSAEKTKKYEYE----REETRQVYMDLNNNIEKMILAFEELRVQAENARLEM-----HFKLKEDH--------EKI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 351 QRDIQERNEEIEKLEFRVRELeqaLLVSADTFQKVEDrkhfgaveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQF 430
Cdd:pfam05483 225 QHLEEEYKKEINDKEKQVSLL---LIQITEKENKMKD--------------LTFLLEESRDKANQLEEKTKLQDENLKEL 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 431 REELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEID 510
Cdd:pfam05483 288 IEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVV-TEFEATTCSLEELLR 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 511 QLNEQVTKLQQQLKITT-----DNKVIEEKNELIRDLETQIE----CLMSDQECVKRNREeeIEQLNEVIEKLQQELANI 581
Cdd:pfam05483 367 TEQQRLEKNEDQLKIITmelqkKSSELEEMTKFKNNKEVELEelkkILAEDEKLLDEKKQ--FEKIAEELKGKEQELIFL 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 582 GQKTSMNAHSLSEEADSLK----HQLDVVIAEKLALEQQvETANEEMTFMKNVLKETNFKMNQLTQEL-FSLKRERESVE 656
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKtseeHYLKEVEDLKTELEKE-KLKNIELTAHCDKLLLENKELTQEASDMtLELKKHQEDII 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 657 KIQSIPENSVNvAIDHLSKD----KPELEVVLTEDALKSLENQTYFKSFEENGKgsiiNLETRLLQLESTVSAKDLELTQ 732
Cdd:pfam05483 524 NCKKQEERMLK-QIENLEEKemnlRDELESVREEFIQKGDEVKCKLDKSEENAR----SIEYEVLKKEKQMKILENKCNN 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 733 CYKQIKDMQ---EQGQFETEMLQKKIVNLQKivEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLRE 809
Cdd:pfam05483 599 LKKQIENKNkniEELHQENKALKKKGSAENK--QLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEE 676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 810 DELGSDISALTLRISELESQVVEMHTSlilekEQVEIAEKNvlekekkllelqkllegnekkQREKEKKRSPQDVEV-LK 888
Cdd:pfam05483 677 VEKAKAIADEAVKLQKEIDKRCQHKIA-----EMVALMEKH---------------------KHQYDKIIEERDSELgLY 730
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1825597415 889 TTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEE 933
Cdd:pfam05483 731 KNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKME 775
|
|
| NtpI |
COG1269 |
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion]; |
344-592 |
3.23e-03 |
|
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
Pssm-ID: 224188 [Multi-domain] Cd Length: 660 Bit Score: 42.35 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 344 LLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSA--DTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEIT 421
Cdd:COG1269 30 LVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEvlDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 422 NLEEQ---LEQFREELENKNEEVQQLHMQLEIQKK--ESTTRLQELEQEN-KLFKDDMEKLGLAIKESDamstqdqhvLF 495
Cdd:COG1269 110 EVEELtrkLEERLSELDEELEDLEDLLEELEPLAYldFDLSLLRGLKFLLvRLGLVRREKLEALVGVIE---------DE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 496 GKFAQIIQEKEVEI-----DQLNEQVTKLQQQLKIT---------TDNKVIEEKNELIRDLETQIECLMSDQECVKRNRE 561
Cdd:COG1269 181 VALYGENVEASVVIvvahgAEDLDKVSKILNELGFElyevpefdgGPSELISELEEVIAEIQDELESLRSELEALAEKIA 260
|
250 260 270
....*....|....*....|....*....|.
gi 1825597415 562 EEIEQLNEVIEKlQQELANIGQKTSMNAHSL 592
Cdd:COG1269 261 EELLAVREILEI-EKALGDVLSKLARTEYTL 290
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
127-760 |
3.24e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 127 QLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSR-QKEAMKAEAGPV 205
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKaERELSKAEKNSL 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 206 EQQLLQETEKLMKEKLEV--------QCQAEKVRD-DLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLR---QQNQAL 273
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLdrklrkldQEMEQLNHHtTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfPNKKQL 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 274 EKQLEKMRKfldEQAIDREHERDVfQQEIQKLEQQlkvvprfqpiSEHQTREVEQLANHLKEKTDKCSElLLSKEQLQRD 353
Cdd:TIGR00606 576 EDWLHSKSK---EINQTRDRLAKL-NKELASLEQN----------KNHINNELESKEEQLSSYEDKLFD-VCGSQDEESD 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 354 IQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREE 433
Cdd:TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 434 LENKNEE------VQQLHMQLEIQK-KESTTRLQELEQENKLFKDDMEK----LG-LAIKESDAMSTQDQHVLFGKFAQI 501
Cdd:TIGR00606 721 KEKRRDEmlglapGRQSIIDLKEKEiPELRNKLQKVNRDIQRLKNDIEEqetlLGtIMPEEESAKVCLTDVTIMERFQME 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 502 IQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLmsdQECVKrNREEEIEQLNEVIEKLQQELANI 581
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELN---RKLIQ-DQQEQIQHLKSKTNELKSEKLQI 876
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 582 G------QKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVlKETNFKMNQLtqELFSLKRERESV 655
Cdd:TIGR00606 877 GtnlqrrQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS-KETSNKKAQD--KVNDIKEKVKNI 953
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 656 EKIQSIPENSVNVAIDHLSKDKpelEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRLLQleSTVSAKDLELTQCYK 735
Cdd:TIGR00606 954 HGYMKDIENKIQDGKDDYLKQK---ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQ--ERWLQDNLTLRKREN 1028
|
650 660
....*....|....*....|....*.
gi 1825597415 736 QIKDMQEQ-GQFETEMLQKKIVNLQK 760
Cdd:TIGR00606 1029 ELKEVEEElKQHLKEMGQMQVLQMKQ 1054
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
80-648 |
3.25e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 80 PYSLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRA----REQLAVELSKAEGVIDGYADEKTLFERQI-Q 154
Cdd:TIGR00618 294 PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSsieeQRRLLQTLHSQEIHIRDAHEVATSIREIScQ 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 155 EKTD---------IIDRLEQELLCASNRLQELEAeqQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQC 225
Cdd:TIGR00618 374 QHTLtqhihtlqqQKTTLTQKLQSLCKELDILQR--EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTA 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 226 QAEKVRDDLQK---QVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDR----------- 291
Cdd:TIGR00618 452 QCEKLEKIHLQesaQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdnpgpltrrmq 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 292 --EHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVR 369
Cdd:TIGR00618 532 rgEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 370 ELEQALLV----SADTFQKVEDRKHFGAVEAKPELSLE-VQLQAERDAIDRKEKEITNLEEQLEQFREELENKneevqql 444
Cdd:TIGR00618 612 CEQHALLRklqpEQDLQDVRLHLQQCSQELALKLTALHaLQLTLTQERVREHALSIRVLPKELLASRQLALQK------- 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 445 hmqLEIQKKESTTRLQELEQENKLFKDDMEKlglaIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLK 524
Cdd:TIGR00618 685 ---MQSEKEQLTYWKEMLAQCQTLLRELETH----IEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLK 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 525 ITTDNKVIEEKNELIRD-LETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQL 603
Cdd:TIGR00618 758 ARTEAHFNNNEEVTAALqTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRL 837
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1825597415 604 DVVIAEKLALEQQVETaNEEMTFMKNVLKETNFKMNQLTQELFSL 648
Cdd:TIGR00618 838 EEKSATLGEITHQLLK-YEECSKQLAQLTQEQAKIIQLSDKLNGI 881
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1302-1636 |
3.33e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1302 RRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMK---DRATELQEQLSSEKMVVAE 1378
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1379 LKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEvhlLNDTLASEQKKSRELQWALEKEKAKLGRSEERdkeeLE 1458
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ---LKEELKALREALDELRAELTLLNEEAANLRER----LE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1459 DLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSeeqgrnlELQVLLESEKVRIREMSSTLDRERELH 1538
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-------ELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 1539 AQLQSSDGTgqsrpplpsedlLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMekdRQVHRKTLQTEQEANTEGQK 1618
Cdd:TIGR02168 901 EELRELESK------------RSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALENKIED 965
|
330
....*....|....*...
gi 1825597415 1619 KMHELQSKVEDLQRQLEE 1636
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKE 983
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
324-643 |
3.56e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 324 REVEQLANHLKEKTDKCSELLLSKEQL---QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKV-EDRKHFGAVEAKPE 399
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLaaeQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVqTALRQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 400 LSLEVQLQAERDAIDRKEkeitnLEEQLEQFREELENKNEEVQQLHMQL--------EIQKKESTTR--LQELEQENKLF 469
Cdd:PRK04863 356 DLEELEERLEEQNEVVEE-----ADEQQEENEARAEAAEEEVDELKSQLadyqqaldVQQTRAIQYQqaVQALERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 470 KDDmeklGLAIKESDAMstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEK-------------- 535
Cdd:PRK04863 431 GLP----DLTADNAEDW---------------LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQayqlvrkiagevsr 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 536 -------NELIRDLETQIecLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNaHSLSEEADSLKHQLDvviA 608
Cdd:PRK04863 492 seawdvaRELLRRLREQR--HLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKN-LDDEDELEQLQEELE---A 565
|
330 340 350
....*....|....*....|....*....|....*
gi 1825597415 609 EKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 643
Cdd:PRK04863 566 RLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
402-960 |
3.61e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 402 LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLhmqleiqkKESTTRLQELEQENKLFKDDMEKLGLAIK 481
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL--------EELKEEIEELEKELESLEGSKRKLEEKIR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 482 ESDAMstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQ----QLKITTDNKVIEEKNELIRDLETQIECLMSDQECVK 557
Cdd:PRK03918 263 ELEER---------------IEELKKEIEELEEKVKELKElkekAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 558 R------NREEEIEQLNEVIEKLQQELANIGQKtsmnaHSLSEEADSLKHQLDVVIAEKLALEqqVETANEEMTFMKNVL 631
Cdd:PRK03918 328 ErikeleEKEERLEELKKKLKELEKRLEELEER-----HELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 632 KETNFKMNQLTQELFSLKRERESVEKiqsipensvnvAIDHLSKDKPELEVV---LTEDALKSLENQtYFKSFE--ENGK 706
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKELKK-----------AIEELKKAKGKCPVCgreLTEEHRKELLEE-YTAELKriEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 707 GSIIN----LETRLLQLESTVSA--KDLELTQCYKQIKDMQEQ-GQFETEMLQKKIVNLQKIVEEkvAAALVSQI----- 774
Cdd:PRK03918 469 KEIEEkerkLRKELRELEKVLKKesELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEK--LIKLKGEIkslkk 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 775 QLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELgSDISALTLRISELES------QVVEMHTSLILEKEQVEIAE 848
Cdd:PRK03918 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGF-ESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 849 KNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKT-TTELfhSNEESGF---FNELEALRAESVATKAELASYK 924
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREeYLEL--SRELAGLraeLEELEKRREEIKKTLEKLKEEL 703
|
570 580 590
....*....|....*....|....*....|....*.
gi 1825597415 925 EKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKE 960
Cdd:PRK03918 704 EEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
348-524 |
4.14e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 348 EQLQRDIQERNEEIEKLEFRVRELEQAllvsadtfqkVEDRKHFGAVEAKPELSL--EVQLQAERDAIDRKEKEITNLEE 425
Cdd:PRK04863 789 EQLRAEREELAERYATLSFDVQKLQRL----------HQAFSRFIGSHLAVAFEAdpEAELRQLNRRRVELERALADHES 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 426 QLEQFREELENKNEEVQQLHM---QLEIQKKES-TTRLQELEQEnklfkddmeklgLAIKESDAMSTQDQHVLFGKFAQI 501
Cdd:PRK04863 859 QEQQQRSQLEQAKEGLSALNRllpRLNLLADETlADRVEEIREQ------------LDEAEEAKRFVQQHGNALAQLEPI 926
|
170 180
....*....|....*....|....*.
gi 1825597415 502 ---IQEKEVEIDQLNEQVTKLQQQLK 524
Cdd:PRK04863 927 vsvLQSDPEQFEQLKQDYQQAQQTQR 952
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
192-543 |
6.04e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 41.82 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 192 SRQKEAMKAEAGPVEQ--QLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEidveeqvsRFIELEQEKNTelmdlrQQ 269
Cdd:pfam15964 321 SSLAEAQQRESSAYEQvkQAVQMTEEANFEKTKALIQCEQLKSELERQKERLE--------KELASQQEKRA------QE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 270 NQALEKQLEKMRKFLDEQAIdreherdVFQQEIQKLEQQLKVVPRFQPISEHQTREVE-QLANHLKEKTDKCSEL--LLS 346
Cdd:pfam15964 387 KEALRKEMKKEREELGATML-------ALSQNVAQLEAQVEKVTREKNSLVSQLEEAQkQLASQEMDVTKVCGEMryQLN 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 347 KEQLQRDIQE------RNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSL-------EVQL---QAER 410
Cdd:pfam15964 460 QTKMKKDEAEkehreyRTKTGRQLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLtellgesEHQLhltRLEK 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 411 DAIDR---------------KEKEITNLEEQLEQFREELENK---------------NEEVQQLHMQLEIQKKESTTRLQ 460
Cdd:pfam15964 540 ESIQQsfsneakaqalqaqqREQELTQKMQQMEAQHDKTVNEqyslltsqntfiaklKEECCTLAKKLEEITQKSRSEVE 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1825597415 461 ELEQENKLFKDDMEKLGLAIKESDamstqDQHVLFGKFAQIIQEKEVEIDQlNEQVTKLQQQLKITTDNKVIEEKNELIR 540
Cdd:pfam15964 620 QLSQEKEYLQDRLEKLQKRNEELE-----EQCVQHGRMHERMKQRLRQLDK-HCQATAQQLVQLLSKQNQLFKERQNLTE 693
|
...
gi 1825597415 541 DLE 543
Cdd:pfam15964 694 EVQ 696
|
|
|