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Conserved domains on  [gi|1908918730|ref|NP_001374115|]
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ataxin-2-like protein isoform 22 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 123-196 1.61e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 464173  Cd Length: 78  Bit Score: 83.76  E-value: 1.61e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  123 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 196
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 264-326 1.53e-17

LsmAD domain; This domain is found associated with Lsm domain.


:

Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.53e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  264 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 326
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 336-919 7.53e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 7.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  336 GRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGP-----------GSEARGINGG 404
Cdd:PHA03247  2513 SRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPrpaprpsepavTSRARRPDAP 2592

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  405 PSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRmyPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Cdd:PHA03247  2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP--SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  485 SDPGVGSISPASPKISLAPTDVpglqneqkrfqleelrkfgaqfklqpsSSPENSLDPFPPrilkeepkgkekevdgllt 564
Cdd:PHA03247  2671 GRAAQASSPPQRPRRRAARPTV---------------------------GSLTSLADPPPP------------------- 2704

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  565 sepmgspvssktesvsdkEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLikgedkdeGPVAEQVKKSTLNPNAKEFNP 644
Cdd:PHA03247  2705 ------------------PPTPEPAPHALVSATPLPPGPAAARQASPALPA--------APAPPAVPAGPATPGGPARPA 2758

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  645 TKPLlsvnksTSTPTSPGPrthstPSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAK 724
Cdd:PHA03247  2759 RPPT------TAGPPAPAP-----PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  725 GSLPPQRSDQHQPASAPPmmqaaaaagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyPSQPVFAPMLQSNP--RMLT 802
Cdd:PHA03247  2827 PLPPPTSAQPTAPPPPPG----------------PPPPSLPLGGSVAPGGDVRRRPP---SRSPAAKPAAPARPpvRRLA 2887

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  803 SGSHPQAIVSSSTPQYPSAEQPTPQAlyatvhqsyPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQHQAGQAPHLG 882
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPPQPQA---------PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA 2958

                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 1908918730  883 SGQPQQNLYHPGALTGTPPSLP-PGPSAQSPQSSFPQP 919
Cdd:PHA03247  2959 VPQPWLGALVPGRVAVPRFRVPqPAPSREAPASSTPPL 2996
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 123-196 1.61e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 83.76  E-value: 1.61e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  123 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 196
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 264-326 1.53e-17

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.53e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  264 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 326
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PHA03247 PHA03247
large tegument protein UL36; Provisional
 336-919 7.53e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 7.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  336 GRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGP-----------GSEARGINGG 404
Cdd:PHA03247  2513 SRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPrpaprpsepavTSRARRPDAP 2592

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  405 PSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRmyPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Cdd:PHA03247  2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP--SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  485 SDPGVGSISPASPKISLAPTDVpglqneqkrfqleelrkfgaqfklqpsSSPENSLDPFPPrilkeepkgkekevdgllt 564
Cdd:PHA03247  2671 GRAAQASSPPQRPRRRAARPTV---------------------------GSLTSLADPPPP------------------- 2704

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  565 sepmgspvssktesvsdkEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLikgedkdeGPVAEQVKKSTLNPNAKEFNP 644
Cdd:PHA03247  2705 ------------------PPTPEPAPHALVSATPLPPGPAAARQASPALPA--------APAPPAVPAGPATPGGPARPA 2758

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  645 TKPLlsvnksTSTPTSPGPrthstPSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAK 724
Cdd:PHA03247  2759 RPPT------TAGPPAPAP-----PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  725 GSLPPQRSDQHQPASAPPmmqaaaaagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyPSQPVFAPMLQSNP--RMLT 802
Cdd:PHA03247  2827 PLPPPTSAQPTAPPPPPG----------------PPPPSLPLGGSVAPGGDVRRRPP---SRSPAAKPAAPARPpvRRLA 2887

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  803 SGSHPQAIVSSSTPQYPSAEQPTPQAlyatvhqsyPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQHQAGQAPHLG 882
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPPQPQA---------PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA 2958

                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 1908918730  883 SGQPQQNLYHPGALTGTPPSLP-PGPSAQSPQSSFPQP 919
Cdd:PHA03247  2959 VPQPWLGALVPGRVAVPRFRVPqPAPSREAPASSTPPL 2996
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 767-1005 2.95e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 54.66  E-value: 2.95e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  767 NPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSG----SHPQAI----VSSS------TPQYPSAEQPTPQALYAT 832
Cdd:pfam09770  106 QPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTGyekyKEPEPIpdlqVDASlwgvapKKAAAPAPAPQPAAQPAS 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  833 VHQSYPHHAT------QLHAHQPQPATTPTGS---QPQSQHAAPSPVQQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSL 903
Cdd:pfam09770  186 LPAPSRKMMSleeveaAMRAQAKKPAQQPAPApaqPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTI 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  904 PPGPSAQSPQSSFPQPAAVYAIHHQQLPhgfTNMAHVTQAhvqtgitaappphpGAPHPPQVMLLHPPQSHGGPPQGAVP 983
Cdd:pfam09770  266 LQRPQSPQPDPAQPSIQPQAQQFHQQPP---PVPVQPTQI--------------LQNPNRLSAARVGYPQNPQPGVQPAP 328

                          250       260
                   ....*....|....*....|..
gi 1908918730  984 QSGVPALSASTPSPYPYIGHPQ 1005
Cdd:pfam09770  329 AHQAHRQQGSFGRQAPIITHPQ 350
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 791-928 5.82e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.56  E-value: 5.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  791 APMLQSNPRMLTSGSHPQaivssstPQYpsaEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPV 870
Cdd:TIGR01628  380 PRMRQLPMGSPMGGAMGQ-------PPY---YGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRN 449

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  871 QQHQAGQAPhlgsgqpqqnlyhpgaltgtPPSLPPGPSAQSPQSSFPQPAAVYAIHHQ 928
Cdd:TIGR01628  450 AQNAAQKPP--------------------MQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 123-196 1.61e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 83.76  E-value: 1.61e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  123 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 196
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 264-326 1.53e-17

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.53e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  264 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 326
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PHA03247 PHA03247
large tegument protein UL36; Provisional
 336-919 7.53e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.34  E-value: 7.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  336 GRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGP-----------GSEARGINGG 404
Cdd:PHA03247  2513 SRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPrpaprpsepavTSRARRPDAP 2592

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  405 PSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRmyPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 484
Cdd:PHA03247  2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP--SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  485 SDPGVGSISPASPKISLAPTDVpglqneqkrfqleelrkfgaqfklqpsSSPENSLDPFPPrilkeepkgkekevdgllt 564
Cdd:PHA03247  2671 GRAAQASSPPQRPRRRAARPTV---------------------------GSLTSLADPPPP------------------- 2704

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  565 sepmgspvssktesvsdkEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLikgedkdeGPVAEQVKKSTLNPNAKEFNP 644
Cdd:PHA03247  2705 ------------------PPTPEPAPHALVSATPLPPGPAAARQASPALPA--------APAPPAVPAGPATPGGPARPA 2758

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  645 TKPLlsvnksTSTPTSPGPrthstPSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAK 724
Cdd:PHA03247  2759 RPPT------TAGPPAPAP-----PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  725 GSLPPQRSDQHQPASAPPmmqaaaaagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyPSQPVFAPMLQSNP--RMLT 802
Cdd:PHA03247  2827 PLPPPTSAQPTAPPPPPG----------------PPPPSLPLGGSVAPGGDVRRRPP---SRSPAAKPAAPARPpvRRLA 2887

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  803 SGSHPQAIVSSSTPQYPSAEQPTPQAlyatvhqsyPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQHQAGQAPHLG 882
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPPQPQA---------PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA 2958

                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 1908918730  883 SGQPQQNLYHPGALTGTPPSLP-PGPSAQSPQSSFPQP 919
Cdd:PHA03247  2959 VPQPWLGALVPGRVAVPRFRVPqPAPSREAPASSTPPL 2996
PHA03247 PHA03247
large tegument protein UL36; Provisional
 365-993 1.99e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 1.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  365 RCSSSRGGRPGLSSLPPRGPhhldNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVgrm 444
Cdd:PHA03247  2487 RFPFAAGAAPDPGGGGPPDP----DAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAA--- 2559

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  445 yPPRSPKSAAPAPISASCP-EPPIGS-----AVPTSSASIPVTSSVSDPGVGSISPASPKISLAPTDVPGLQNEQKRFQL 518
Cdd:PHA03247  2560 -PPAAPDRSVPPPRPAPRPsEPAVTSrarrpDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEP 2638

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  519 EELRKFGAQFKLQPSSSPENSLDPFPPRILKEEPKGKEKEVDGLLTSEPMGSPVSSKTESVS--DKEDKPPLAPSGGTEG 596
Cdd:PHA03247  2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADppPPPPTPEPAPHALVSA 2718

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  597 PEQPPPPCPSQTGSPPVGLikgedkdeGPVAEQVKKSTLNPNAKEFNPTKPLlsvnksTSTPTSPGPrthstPSIPVlTA 676
Cdd:PHA03247  2719 TPLPPGPAAARQASPALPA--------APAPPAVPAGPATPGGPARPARPPT------TAGPPAPAP-----PAAPA-AG 2778

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  677 GQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVA 756
Cdd:PHA03247  2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  757 ATPYSSYIPynPQQFPGQPAMMqpmAHYPSQPVFAPMLQSNPRMLTSGSHPQAivssSTPQYPSAEQPTPQALYATVHQS 836
Cdd:PHA03247  2859 GGDVRRRPP--SRSPAAKPAAP---ARPPVRRLARPAVSRSTESFALPPDQPE----RPPQPQAPPPPQPQPQPPPPPQP 2929

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  837 YPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQHQAG---QAPHLGSGQPQQNLYHPGALTGTPPSLPPgPSAQSPQ 913
Cdd:PHA03247  2930 QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgrvAVPRFRVPQPAPSREAPASSTPPLTGHSL-SRVSSWA 3008

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  914 SSF-------PQPAAVYAIHHQQLPHGFTNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSG 986
Cdd:PHA03247  3009 SSLalheetdPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFG 3088


                   ....*..
gi 1908918730  987 VPALSAS 993
Cdd:PHA03247  3089 PPPLSAN 3095
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 767-1005 2.95e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 54.66  E-value: 2.95e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  767 NPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSG----SHPQAI----VSSS------TPQYPSAEQPTPQALYAT 832
Cdd:pfam09770  106 QPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTGyekyKEPEPIpdlqVDASlwgvapKKAAAPAPAPQPAAQPAS 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  833 VHQSYPHHAT------QLHAHQPQPATTPTGS---QPQSQHAAPSPVQQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSL 903
Cdd:pfam09770  186 LPAPSRKMMSleeveaAMRAQAKKPAQQPAPApaqPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTI 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  904 PPGPSAQSPQSSFPQPAAVYAIHHQQLPhgfTNMAHVTQAhvqtgitaappphpGAPHPPQVMLLHPPQSHGGPPQGAVP 983
Cdd:pfam09770  266 LQRPQSPQPDPAQPSIQPQAQQFHQQPP---PVPVQPTQI--------------LQNPNRLSAARVGYPQNPQPGVQPAP 328

                          250       260
                   ....*....|....*....|..
gi 1908918730  984 QSGVPALSASTPSPYPYIGHPQ 1005
Cdd:pfam09770  329 AHQAHRQQGSFGRQAPIITHPQ 350
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 805-968 2.51e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 51.58  E-value: 2.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  805 SHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQL--HAHQPQPATTPTGSQPQSQHAAPSPVQQHQAGQAPHLg 882
Cdd:pfam09770  217 APAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHpgQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPV- 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  883 SGQPQQNLYHPgaltgtppSLPPGPSAQSPQSSFPQPAAVYAIHHQQLPHGFTNMAHVtQAHvqtgitaappphpgaphP 962
Cdd:pfam09770  296 PVQPTQILQNP--------NRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPI-ITH-----------------P 349


                   ....*.
gi 1908918730  963 PQVMLL 968
Cdd:pfam09770  350 QQLAQL 355
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 785-916 2.55e-06

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 52.01  E-value: 2.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  785 PSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTP-----QYPSAEQPT-PQALYATVHQSYPHHATQLHAHQPQpATTPTGS 858
Cdd:PRK10263   740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPvapqpQYQQPQQPVaPQPQYQQPQQPVAPQPQYQQPQQPV-APQPQYQ 818

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1908918730  859 QPQSQHAAPSPVQQHQAGQAPhlgsgQPQQNLYHPGALTG----------TP-PS---LPPGPSAQSPQSSF 916
Cdd:PRK10263   819 QPQQPVAPQPQYQQPQQPVAP-----QPQDTLLHPLLMRNgdsrplhkptTPlPSldlLTPPPSEVEPVDTF 885
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 628-932 1.45e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 49.26  E-value: 1.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  628 EQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPrthSTPSIPVLTagqsGLYSPQYISYIPQIH-------MGPAVQ 700
Cdd:pfam09770   98 EQVRFNRQQPAARAAQSSAQPPASSLPQYQYASQQS---QQPSKPVRT----GYEKYKEPEPIPDLQvdaslwgVAPKKA 170

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  701 APQMYPYPVSNSVPGQQGKYR---------------GAKGSLPPQRSDQHQPASAppmmqaaaaagpplvaatPYSSYIP 765
Cdd:pfam09770  171 AAPAPAPQPAAQPASLPAPSRkmmsleeveaamraqAKKPAQQPAPAPAQPPAAP------------------PAQQAQQ 232

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  766 YnpQQFPGQPAMMQPMAHYPSQPVFAPmlqsnprmltSGSHPQAIVssstpQYPSAEQPTPqalyatvhqsyphhatqlh 845
Cdd:pfam09770  233 Q--QQFPPQIQQQQQPQQQPQQPQQHP----------GQGHPVTIL-----QRPQSPQPDP------------------- 276

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  846 aHQPQPattPTGSQPQSQHAAPSPVQQHQAGQAPHLGSgqPQQNLYHPGALTGTPPslPPGPSAQSPQSSFPQPAAVYAi 925
Cdd:pfam09770  277 -AQPSI---QPQAQQFHQQPPPVPVQPTQILQNPNRLS--AARVGYPQNPQPGVQP--APAHQAHRQQGSFGRQAPIIT- 347


                   ....*..
gi 1908918730  926 HHQQLPH 932
Cdd:pfam09770  348 HPQQLAQ 354
PHA03247 PHA03247
large tegument protein UL36; Provisional
 644-1014 7.16e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 7.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  644 PTKPLLSVNKSTSTPTSPGPrTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQ-QGKYRG 722
Cdd:PHA03247  2595 SARPRAPVDDRGDPRGPAPP-SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRaRRLGRA 2673

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  723 AKGSLPPQRSdqHQPASAPPMMQAAAAAGPPLVAATPYssyiPYNPQQFPGQPAMMQPMAHYPSQPVfAPMLQSNPRMLT 802
Cdd:PHA03247  2674 AQASSPPQRP--RRRAARPTVGSLTSLADPPPPPPTPE----PAPHALVSATPLPPGPAAARQASPA-LPAAPAPPAVPA 2746

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  803 SGSHPQAIVSSSTPQYPSA-EQPTPQALYATVhqsyPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQHQAGQAPhl 881
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGpPAPAPPAAPAAG----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP-- 2820

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  882 gSGQPQQNLYHPGALTGTPPSLPPGPSAQS------------------PQSSFPQPAAVYAIHHQQLPHGFTNMAHVTQA 943
Cdd:PHA03247  2821 -AASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrppSRSPAAKPAAPARPPVRRLARPAVSRSTESFA 2899

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1908918730  944 HVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPG 1014
Cdd:PHA03247  2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 374-672 2.23e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 45.45  E-value: 2.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  374 PGLSSLPPRGPHHLDNSS----PGPGSEARGINGGPSRMSP----KAQRPLRGAKTLSSP--SNRPSGETSVPPPPavgR 443
Cdd:PTZ00449   514 PEASGLPPKAPGDKEGEEgeheDSKESDEPKEGGKPGETKEgevgKKPGPAKEHKPSKIPtlSKKPEFPKDPKHPK---D 590

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  444 MYPPRSPKS--AAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGS--ISPASPKISLAPTDVPGLQNEQKRFQLE 519
Cdd:PTZ00449   591 PEEPKKPKRprSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQrpSSPERPEGPKIIKSPKPPKSPKPPFDPK 670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  520 ELRKFGAQFKLQPSSSPENSLDPFPPRILKEEPKGKEKEVDGLLTSEPMG-SPVSSKTESVSDKEDKPPLAPSggtegpe 598
Cdd:PTZ00449   671 FKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPlPPKLPRDEEFPFEPIGDPDAEQ------- 743

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  599 qpppPCPSQTGSPPVG---LIKGEDKDE---GPVAEQVKKSTLNPNAKEfnPTKPLLSVNKSTS-TPTSPGprTHstPSI 671
Cdd:PTZ00449   744 ----PDDIEFFTPPEEertFFHETPADTplpDILAEEFKEEDIHAETGE--PDEAMKRPDSPSEhEDKPPG--DH--PSL 813


                   .
gi 1908918730  672 P 672
Cdd:PTZ00449   814 P 814
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
846-922 3.25e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.77  E-value: 3.25e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1908918730  846 AHQPQPATTPTGSQPQSqHAAPSPVQQHQAGQAphlgSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAV 922
Cdd:PRK14971   389 APQPSAAAAASPSPSQS-SAAAQPSAPQSATQP----AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 373-772 1.05e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  373 RPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRMYPPRSPKS 452
Cdd:PHA03307    64 RFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGS 143

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  453 AAPAPisasCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASPKISLAPTDVPGLQNeqkrfqlEELRKFGAQFKLQP 532
Cdd:PHA03307   144 PGPPP----AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP-------PAAASPRPPRRSSP 212

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  533 SSSPENSLDPFPPRilkEEPKGKEKEVDGLLTSEPMGSPVSSKTESvSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPP 612
Cdd:PHA03307   213 ISASASSPAPAPGR---SAADDAGASSSDSSSSESSGCGWGPENEC-PLPRPAPITLPTRIWEASGWNGPSSRPGPASSS 288

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  613 VGlIKGEDKDEGPVAEQVKKSTLNPNAKEFNPTKPllSVNKSTSTPTSPGPRTHSTPSipvltaGQSGLYSPQYISYIPQ 692
Cdd:PHA03307   289 SS-PRERSPSPSPSSPGSGPAPSSPRASSSSSSSR--ESSSSSTSSSSESSRGAAVSP------GPSPSRSPSPSRPPPP 359

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  693 IHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAATPYSSYIPYNPQQFP 772
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEP 439
PHA03247 PHA03247
large tegument protein UL36; Provisional
 332-496 3.05e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 3.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  332 RQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHH-------------LDNSSPGPGSEA 398
Cdd:PHA03247  2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRraarptvgsltslADPPPPPPTPEP 2710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  399 RGINGGPSRMSPKAQRPLRGAK--TLSSPSNRPSGETSVPP--PPAVGRMYPPRSPKSAAPAPISASCPEP----PIGSA 470
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASpaLPAAPAPPAVPAGPATPggPARPARPPTTAGPPAPAPPAAPAAGPPRrltrPAVAS 2790

                          170       180
                   ....*....|....*....|....*.
gi 1908918730  471 VPTSSASIPVTSSVSDPGVGSISPAS 496
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPAAVLAPAA 2816
PHA03247 PHA03247
large tegument protein UL36; Provisional
 321-507 5.01e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  321 RTEEEKHSAVQRQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARG 400
Cdd:PHA03247  2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  401 INGGPSRMSPKAQRPLRGAKTLSSPSNRPSGE--TSVPPPPAvgrmyPPRSPKSAAP--APISASCPEPPIGSAVPTSSA 476
Cdd:PHA03247  2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPptTAGPPAPA-----PPAAPAAGPPrrLTRPAVASLSESRESLPSPWD 2803

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1908918730  477 SIPVTSSVSDPGVGSISPASPKISLAPTDVP 507
Cdd:PHA03247  2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 791-928 5.82e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.56  E-value: 5.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  791 APMLQSNPRMLTSGSHPQaivssstPQYpsaEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPV 870
Cdd:TIGR01628  380 PRMRQLPMGSPMGGAMGQ-------PPY---YGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRN 449

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1908918730  871 QQHQAGQAPhlgsgqpqqnlyhpgaltgtPPSLPPGPSAQSPQSSFPQPAAVYAIHHQ 928
Cdd:TIGR01628  450 AQNAAQKPP--------------------MQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
PRK10927 PRK10927
cell division protein FtsN;
817-921 5.99e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 40.05  E-value: 5.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  817 QYPSAEQpTPQALYATVH-QSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQQhQAGQAPHLGSGQPQQNLYHPGA 895
Cdd:PRK10927   138 EVPWNEQ-TPEQRQQTLQrQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQA-QPRQSKPASTQQPYQDLLQTPA 215

                           90       100
                   ....*....|....*....|....*..
gi 1908918730  896 LTGTPPSLP-PGPSAQSPQSsfPQPAA 921
Cdd:PRK10927   216 HTTAQSKPQqAAPVTRAADA--PKPTA 240
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 394-508 6.30e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 6.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  394 PGSEARGINGGPSRMSPKAQRPLRGAKTLSSPsnRPSGETSVPPPPAVGRMYPPRSP-----KSAAPAPISASCPEPPIG 468
Cdd:PRK14951   374 APAEKKTPARPEAAAPAAAPVAQAAAAPAPAA--APAAAASAPAAPPAAAPPAPVAApaaaaPAAAPAAAPAAVALAPAP 451

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1908918730  469 SAVPTSSASIPVTSSVSDPGVGSISPASPKISLAPTDVPG 508
Cdd:PRK14951   452 PAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
 634-893 6.50e-03

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 40.45  E-value: 6.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  634 TLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYipQIHMGPAVQAPQMYPYPvsnsv 713
Cdd:pfam03326  310 TLVPIAGSTGVTEVVSYGHNSTSPSSTPCPSTAVTEADHQTEPEVPWIATAHQESD--QRPIGPGPEKPTFLPPV----- 382

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  714 pgqqGKYRGAKGsLPPQRSDQHQPAsappmmQAAAAAGPPLVAATPYSSYIPYNPQQFPGQPammqpmahypsqpvfapm 793
Cdd:pfam03326  383 ----GGKQFFQG-LRDSRSTSFLTA------PEATSAISDVFQGTEVCQPKRIRALHPPGSP------------------ 433

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  794 lqSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYAT--VHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPvQ 871
Cdd:pfam03326  434 --SANRPLPSSLAPTPTGPVHEPGSSLTPATVPQPLDAApvATPEASHELQPPDEETPQPLDEDQALCGQQDASHPPP-R 510

                          250       260
                   ....*....|....*....|..
gi 1908918730  872 QHQAGQAPHLGSGQPQQNLYHP 893
Cdd:pfam03326  511 GQLDELTTTLESMTEDLNLDSP 532
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 804-922 8.73e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 8.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  804 GSHPQAIVSSSTPQYPSAeQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQ-PQSQHAAPSPVQQHQAGQAPHLG 882
Cdd:PRK07764   391 AGAPAAAAPSAAAAAPAA-APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAgNAPAGGAPSPPPAAAPSAQPAPA 469

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1908918730  883 SGQPQQNLYHPGAltGTPPSLPPGPSAQSPQSSFPQPAAV 922
Cdd:PRK07764   470 PAAAPEPTAAPAP--APPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 327-488 9.31e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 9.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  327 HSAVQRQGSGRESPSLASREGKyIPLPQRVREGPRGGVRcssSRGGRPGLSSLPPRGPHhldnSSPGPGSEARGINGGPS 406
Cdd:PHA03307   241 SSESSGCGWGPENECPLPRPAP-ITLPTRIWEASGWNGP---SSRPGPASSSSSPRERS----PSPSPSSPGSGPAPSSP 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1908918730  407 RMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRMYPPRSPKS-AAPAPISASCPEPPIGSAVPTSSASIPVTSSVS 485
Cdd:PHA03307   313 RASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPpADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA 392


                   ...
gi 1908918730  486 DPG 488
Cdd:PHA03307   393 AVA 395
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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