|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
408-929 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 781.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 408 QVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQME--------PPAGP 479
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAvppaeeeqPPAGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 480 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 559
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 560 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 639
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 640 LQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEG 719
Cdd:pfam15070 241 LQQYVAAYQQLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 720 DGLDREEEEDEeeeeeeavaVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKE 799
Cdd:pfam15070 321 DGLESEEEEEE---------APRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 800 PEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLK 879
Cdd:pfam15070 392 PEHEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1955630604 880 ERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQ 929
Cdd:pfam15070 472 QRHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
974-1019 |
3.28e-26 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 101.69 E-value: 3.28e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1955630604 974 SPRDNPTAQQIMQLLREMQNPRERPGLGSNPCIPFFYRADENDEVK 1019
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
189-908 |
2.69e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 2.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 189 RYQQLAVALDssyvtNKQLNITIEKLKQQNQEItDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQ 268
Cdd:TIGR02168 214 RYKELKAELR-----ELELALLVLRLEELREEL-EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 269 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ----QKKADRYNKELT----------KERDALRLELYKNTQSN 334
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQleelESKLDELAEELAeleekleelkEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 335 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 414
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 415 QLQMERDKYA------ENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELET----SLAELRNQMEPPAGPSEVEQ 484
Cdd:TIGR02168 448 ELEELQEELErleealEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegVKALLKNQSGLSGILGVLSE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 485 QLQAEAEhLRKELE-GLAGQLQAQVQDNE------------------GLSRLNREQEERLLELERAAELWGEQAEARRQI 545
Cdd:TIGR02168 528 LISVDEG-YEAAIEaALGGRLQAVVVENLnaakkaiaflkqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 546 LETMQND--------------RTTISRALSQNRELKEQLA-------ELQSGFVKLTNENMEITSALQSEQHVKrELGKK 604
Cdd:TIGR02168 607 LVKFDPKlrkalsyllggvlvVDDLDNALELAKKLRPGYRivtldgdLVRPGGVITGGSAKTNSSILERRREIE-ELEEK 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 605 LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEM 684
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 685 ARQELQETQERLEAATQQNQQLRAQLslmahpgeGDGLDREEeedeeeeeeeavavpqpmpSIPEDLESREAMVAFFNSA 764
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQI--------EQLKEELK-------------------ALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 765 VASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPApgtggdsvcgetHRALQGAMEKLQSRFMELMQEKADLK 844
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE------------IEELEELIEELESELEALLNERASLE 886
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630604 845 ERVEELEHRCIQLSGETDTIGEyialyqsQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQE 908
Cdd:TIGR02168 887 EALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
216-935 |
1.90e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 1.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 216 QQNQEITDQLEE--------EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQY 287
Cdd:TIGR02168 213 ERYKELKAELRElelallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 288 SRRRVGELERALSAVSTQQKKADRYNKELTKERDALRlelykntQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQK 367
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 368 KLEMTEL-------LLQQFSSrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENL--------KGESA 432
Cdd:TIGR02168 366 ELEELESrleeleeQLETLRS--KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeaelkelQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 433 MWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEPPAGPSEVEQQLQAEAEHL----------RKELEGLAG 502
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvkallknQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 503 QLQAQVQDNEGL---------SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAEL 573
Cdd:TIGR02168 524 VLSELISVDEGYeaaieaalgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 574 QSGFVKLTNE----------NMEITSALQSEQHVKRELGKK--LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQ 641
Cdd:TIGR02168 604 AKDLVKFDPKlrkalsyllgGVLVVDDLDNALELAKKLRPGyrIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 642 QYVAAYQQLTSEKEVLHNQLLlqtQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDG 721
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELR---KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 722 LDREEEEDEEEEEEEAVAVpqpmpsIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPE 801
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAE------AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 802 AaapapgtggdsvCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 881
Cdd:TIGR02168 835 A------------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1955630604 882 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQNPADEP 935
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
181-698 |
7.66e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 7.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 181 ANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALRE----------QLQVHIQTI 250
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEllaelarleqDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 251 GILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKN 330
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 331 TQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL-EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQV 409
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALaELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 410 MESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSR-----VQELETSLAELRNQMEPPAGPSEV-- 482
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagaVAVLIGVEAAYEAALEAALAAALQni 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 483 ----EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQ-------N 551
Cdd:COG1196 552 vvedDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLgrtlvaaR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 552 DRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQ 631
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630604 632 QRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEA 698
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
178-906 |
1.14e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 178 ASSANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQN---QEITDQLEEEKKECHQKQGALREQLQVHIQTIGILV 254
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLdelAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 255 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRV----GELERALSAVSTQQKKADRYNKELTKER-DALRLELYK 329
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 330 NTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEApdanqqLQQAMEERAQLEAHLGQV 409
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG------VKALLKNQSGLSGILGVL 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 410 MESVR------------------QLQMERDKYA--------ENLKGESAMW---RQRMQQMSEQVHTLREEKECSMSRVQ 460
Cdd:TIGR02168 526 SELISvdegyeaaieaalggrlqAVVVENLNAAkkaiaflkQNELGRVTFLpldSIKGTEIQGNDREILKNIEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 461 ELETSLAELRNQMEPPAGPSEVEQQLQaEAEHLRKELEglaGQLQAQVQDNEGLSRlnreqeerllelerAAELWGEQAE 540
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVLVVDDLD-NALELAKKLR---PGYRIVTLDGDLVRP--------------GGVITGGSAK 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 541 ARRQILET---MQNDRTTISRALSQNRELKEQLAELQSgfvkltnENMEITSALQSEQHVKRELGKKLGELQEKLSELKE 617
Cdd:TIGR02168 668 TNSSILERrreIEELEEKIEELEEKIAELEKALAELRK-------ELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 618 TVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLE 697
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 698 AATQQNQQLRAQlslmahpgegdgldreeeedeeeeeeeAVAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRG 777
Cdd:TIGR02168 821 NLRERLESLERR---------------------------IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 778 QLKEQRVRCRRLAHLLASAQKEPEaaapapgtggdsvcgethrALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQL 857
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELE-------------------ELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 1955630604 858 SGETDTIGEYIA-LYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLEL 906
Cdd:TIGR02168 935 EVRIDNLQERLSeEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
361-702 |
1.38e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 361 NLEELQKKLEMTELLLQqfssrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQ 440
Cdd:TIGR02168 678 EIEELEEKIEELEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 441 MSEQVHTLREEKECSMSRVQELETSLAELRNQMEppagpsEVEQ---QLQAEAEHLRKELEGLAGQLQAqvqdnegLSRL 517
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIE------ELEAqieQLKEELKALREALDELRAELTL-------LNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 518 NREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNE-------NMEITSA 590
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNErasleeaLALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 591 LQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDqylgHLQQYVAAYQQLTSEK-EVLHNQLLLQTQL-- 667
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID----NLQERLSEEYSLTLEEaEALENKIEDDEEEar 971
|
330 340 350
....*....|....*....|....*....|....*..
gi 1955630604 668 --VDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 702
Cdd:TIGR02168 972 rrLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
458-913 |
2.09e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 458 RVQELETSLAELRNQMEppagpseveqQLQAEAEHLRKELEGLAGQL----QAQVQDNEGLSRLNREQEERLLELERAAE 533
Cdd:COG1196 233 KLRELEAELEELEAELE----------ELEAELEELEAELAELEAELeelrLELEELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 534 LWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLS 613
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 614 ELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQ 693
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 694 ERLEAATQQNQQLRAQLS-------------------LMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLEsR 754
Cdd:COG1196 463 ELLAELLEEAALLEAALAelleelaeaaarllllleaEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL-E 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 755 EAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETH--RALQGAMEKLQSR 832
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASdlREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 833 FMELMQEKADL---KERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQEL 909
Cdd:COG1196 622 LLGRTLVAARLeaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
....
gi 1955630604 910 VLRL 913
Cdd:COG1196 702 EEEE 705
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
292-718 |
9.69e-11 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 65.94 E-value: 9.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 292 VGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEM 371
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 372 TELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREE 451
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 452 KECSMSRVQELETSLAELRNQMEP---PAGPSEVEQQLQAEAEHLRKE---LEGLAGQLQAQVQDNEGLSRLNREQEERL 525
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEEleeELEQLENELEAAALEERLKEArllLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 526 LELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQHVKRELgKKL 605
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG---LPPDLSPEELLELLDRIEELQELL-REA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 606 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYvAAYQQLTSEKEVLHNQLLLQTQLVDQL--QQQEAQGKAVAE 683
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELleALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|....*
gi 1955630604 684 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGE 718
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
211-908 |
3.41e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 211 IEKLKQQNQEITDQLEEEKKECHQKQgALREQLQVHIQTIGilVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRR 290
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIE-QLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 291 RVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLE 370
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 371 mtelllqqfSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLRE 450
Cdd:TIGR02169 403 ---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQ 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 451 EKECSMSRVQELETSLAELRNQM---EPPAGPSEVEQQLQAEAEH-LRKELEGLAGQ----------------------L 504
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELaeaEAQARASEERVRGGRAVEEvLKASIQGVHGTvaqlgsvgeryataievaagnrL 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 505 QAQVQDNEG-------------LSR-----LNREQEERLLELERAAELWGEQA-----------EARRQILETmqndrTT 555
Cdd:TIGR02169 550 NNVVVEDDAvakeaiellkrrkAGRatflpLNKMRDERRDLSILSEDGVIGFAvdlvefdpkyePAFKYVFGD-----TL 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 556 ISRALSQNRELKEQLAelqsgFVKLTNENME----ITS---ALQSEQHVKRELGKKLGELQEKLSELKetvelksQEAQS 628
Cdd:TIGR02169 625 VVEDIEAARRLMGKYR-----MVTLEGELFEksgaMTGgsrAPRGGILFSRSEPAELQRLRERLEGLK-------RELSS 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 629 LQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLllqtqlvDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRA 708
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 709 QLSLMahpgegdgldreeeEDEEEEEEEAVavpqpmpsipEDLESREAMVAF--FNSAVASAEEEQARLRGQLKEQRVRC 786
Cdd:TIGR02169 766 RIEEL--------------EEDLHKLEEAL----------NDLEARLSHSRIpeIQAELSKLEEEVSRIEARLREIEQKL 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 787 RRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGE 866
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQ------------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1955630604 867 YIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQE 908
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
219-851 |
4.84e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 4.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 219 QEITDQLEE-----EKKECHQKQGALREQLQVHIqtigiLVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVG 293
Cdd:COG1196 196 GELERQLEPlerqaEKAERYRELKEELKELEAEL-----LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 294 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmte 373
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE--- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 374 lllqqfssrceapDANQQLQQAMEERAQLEAhlgQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKE 453
Cdd:COG1196 348 -------------EAEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 454 cSMSRVQELETSLAELRNQMEppagpsEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAE 533
Cdd:COG1196 412 -LLERLERLEEELEELEEALA------ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 534 LWgEQAEARRQILETMQNDR------TTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGE 607
Cdd:COG1196 485 EL-AEAAARLLLLLEAEADYegflegVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAI 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 608 LQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQqeaqgkAVAEMARQ 687
Cdd:COG1196 564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA------ARLEAALR 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 688 ELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVpqpmpsipEDLESREAMVAFFNSAVAS 767
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE--------EELELEEALLAEEEEEREL 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 768 AEEEQARLRGQLKEQRVRCR-------RLAHLLASAQKEPEAAAPAPGTGGD-SVCGETHRALQGAMEKL---------- 829
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQleaereeLLEELLEEEELLEEEALEELPEPPDlEELERELERLEREIEALgpvnllaiee 789
|
650 660
....*....|....*....|....*.
gi 1955630604 830 ----QSRFMELMQEKADLKERVEELE 851
Cdd:COG1196 790 yeelEERYDFLSEQREDLEEARETLE 815
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-708 |
4.41e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 4.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 205 KQLNITIEKLKQQNQEItDQLEEEKKECHQKQGALREQLQVHIQTIgilvSEKAELQTALAHTQHAARQKEGESEDLASR 284
Cdd:PRK02224 206 ERLNGLESELAELDEEI-ERYEEQREQARETRDEADEVLEEHEERR----EELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 285 LQYSRRRVGELERALSAV-------STQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAG 357
Cdd:PRK02224 281 VRDLRERLEELEEERDDLlaeagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 358 MQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMwRQR 437
Cdd:PRK02224 361 LREEAAELESELEEAREAVEDRREEIEELEE--EIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT-LRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 438 MQQMSEQVHTLREEKEC------------------SMSRVQELETSLAELRNQMEppagpsEVEQQLQA--EAEHLRKEL 497
Cdd:PRK02224 438 ARERVEEAEALLEAGKCpecgqpvegsphvetieeDRERVEELEAELEDLEEEVE------EVEERLERaeDLVEAEDRI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 498 EGLAGQLQAQVQ-----------DNEGLSRLNreqeERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNREL 566
Cdd:PRK02224 512 ERLEERREDLEEliaerretieeKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 567 KEQLAELQSGFVKLTNENMEITS---ALQSEQHVKRELGKKLGELQEKLSELKETV-ELKSQEAQSLQQQRDQYLGHLQQ 642
Cdd:PRK02224 588 IESLERIRTLLAAIADAEDEIERlreKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEE 667
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630604 643 YVaayQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQgkavaemaRQELQETQERLEAATQQNQQLRA 708
Cdd:PRK02224 668 KL---DELREERDDLQAEIGAVENELEELEELRER--------REALENRVEALEALYDEAEELES 722
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
205-698 |
1.26e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 205 KQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALreqLQVHIQTIGILVSEKAELQTALAHTQHAAR------QKEGES 278
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---LQQHQDRIEQLISEHEVEITGLTEKASSARsqansiQSQLEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 279 EDLASRLQYSR--RRVGELERALSAVSTQQKKADRYNK----ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLV 352
Cdd:pfam15921 304 IQEQARNQNSMymRQLSDLESTVSQLRSELREAKRMYEdkieELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 353 TE--KAGMQLNLEELQKKlemtELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLgQVMESVRQLQMERDKYAENLKGE 430
Cdd:pfam15921 384 ADlhKREKELSLEKEQNK----RLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL-KAMKSECQGQMERQMAAIQGKNE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 431 SamwrqrMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQD 510
Cdd:pfam15921 459 S------LEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 511 NEGLSRLNREQEERLLELERAAELWGEQ---AEARRQILETMQNDRTTISRALSQNRELKEQLAElqsgfvKLTNENMEi 587
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEALKLQMAEKdkvIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEK------EINDRRLE- 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 588 tsaLQSEQHVKRELGKKLGELQEKLSELK-ETVEL------KSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQ 660
Cdd:pfam15921 606 ---LQEFKILKDKKDAKIRELEARVSDLElEKVKLvnagseRLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682
|
490 500 510
....*....|....*....|....*....|....*...
gi 1955630604 661 LLLQTQlvdQLQQQEAQGKAVAEMARQELQETQERLEA 698
Cdd:pfam15921 683 FRNKSE---EMETTTNKLKMQLKSAQSELEQTRNTLKS 717
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
275-711 |
6.06e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 6.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 275 EGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRynkelTKERDALRLELYKNTQSN-EDLKQEKSELEEKLRVLVT 353
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARE-----TRDEADEVLEEHEERREElETLEAEIEDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 354 EKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQ-LQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESA 432
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEaVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 433 MWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNE 512
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 513 G-LSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISralsqnrELKEQLAELQSGFVKLTNENMEITSAL 591
Cdd:PRK02224 433 AtLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVE-------ELEAELEDLEEEVEEVEERLERAEDLV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 592 QSEQHVKReLGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKE-------VLHNQLLLQ 664
Cdd:PRK02224 506 EAEDRIER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEeareevaELNSKLAEL 584
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1955630604 665 TQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQLS 711
Cdd:PRK02224 585 KERIESLERIRTLLAAIAD-AEDEIERLREKREALAELNDERRERLA 630
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-710 |
1.23e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 204 NKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIgilvSEKAELQTALAHTQHAARQKEGESEDLAS 283
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLK----DEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 284 RLQYSRRRVGELERALSAVSTQQKKADRYNKEltKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLE 363
Cdd:TIGR04523 289 QLNQLKSEISDLNNQKEQDWNKELKSELKNQE--KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 364 ELQKKL-----EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEahlgQVMESVRQLQMERDKYAENLKGESAMWRQRM 438
Cdd:TIGR04523 367 EKQNEIeklkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD----EQIKKLQQEKELLEKEIERLKETIIKNNSEI 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 439 QQMSEQVHTLREEkecsmsrVQELETSLAELRNQMEppagpseveqQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 518
Cdd:TIGR04523 443 KDLTNQDSVKELI-------IKNLDNTRESLETQLK----------VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 519 reqeerlleleraaelwgeqaearRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQhvk 598
Cdd:TIGR04523 506 ------------------------KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN--- 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 599 reLGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYlghlqqyvaayqqlTSEKEVLHNQLLLQTQLVDQLQQQEAQG 678
Cdd:TIGR04523 559 --LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK--------------EKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
490 500 510
....*....|....*....|....*....|..
gi 1955630604 679 KAVAEMARQELQETQERLEAATQQNQQLRAQL 710
Cdd:TIGR04523 623 KKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
449-881 |
1.49e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 449 REEKECSMSRVQELETSLAELRNQMEppagpseveqQLQAEAEHLRKELEglagqLQAQVQDNEGLSRLNreqeerllel 528
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLE----------RLRREREKAERYQA-----LLKEKREYEGYELLK---------- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 529 eraaelwgEQAEARRQIlETMQNDRTTISRALSQNRELKEQLA-ELQSGFVKLTNENMEITSALQSEQhvkRELGKKLGE 607
Cdd:TIGR02169 231 --------EKEALERQK-EAIERQLASLEEELEKLTEEISELEkRLEEIEQLLEELNKKIKDLGEEEQ---LRVKEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 608 LQEKLSELKETVELKSQEAQSLQQQRdqylghlQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQ 687
Cdd:TIGR02169 299 LEAEIASLERSIAEKERELEDAEERL-------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 688 ELQETQERLEAATQQNQQLRAQLSLMAHpgEGDGLDREEEEDEeeeeeeavavpqpmpsipEDLESREAMVAFFNSAVAS 767
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEKLKR--EINELKRELDRLQ------------------EELQRLSEELADLNAAIAG 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 768 AEEEQARLRGQLKEQRVRCRRLAHLLASAQKEpeaaapapgtggdsvcgethralqgaMEKLQSRFMELMQEKADLKERV 847
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAAD--------------------------LSKYEQELYDLKEEYDRVEKEL 485
|
410 420 430
....*....|....*....|....*....|....
gi 1955630604 848 EELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 881
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
307-709 |
2.00e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 307 KKADRYNKELTKERDalrlELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAP 386
Cdd:TIGR04523 138 KNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 387 DA---------------NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREE 451
Cdd:TIGR04523 214 KSlesqiselkkqnnqlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL--------SEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 452 KEcsmSRVQELETSLAELRNQMEppagpSEVEQQLQAEAEHLRKELEGLAGQLqaqVQDNEGLSRLNreqeerllelera 531
Cdd:TIGR04523 286 LE---KQLNQLKSEISDLNNQKE-----QDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLN------------- 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 532 aelwgeqaearrqilETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEK 611
Cdd:TIGR04523 342 ---------------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 612 LSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQE 691
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
410
....*....|....*...
gi 1955630604 692 TQERLEAATQQNQQLRAQ 709
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEE 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-695 |
3.24e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 211 IEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGIL------VSEKAELQTALAHTQHAARQKEGESEDLASR 284
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekeVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 285 LQYSRRRVGELERALSAVSTQ-------QKKADRYnKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAg 357
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKvkelkelKEKAEEY-IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 358 mqlNLEELQKKLEMTELLLQQFSSRCEapdANQQLQQAMEERAQLEAHLG--------QVMESVRQLQMERDKYAENLKG 429
Cdd:PRK03918 339 ---RLEELKKKLKELEKRLEELEERHE---LYEEAKAKKEELERLKKRLTgltpekleKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 430 ESAMWRQRMQQMSEQVHTLREEK-ECSM--------SRVQELETSLAELRNQMEPPAGPSEVEQQLQAEAEHLRKELEGl 500
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKgKCPVcgrelteeHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK- 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 501 agqlqaqvqdNEGLSRLNREQeerlleleraaelwgEQAEARRQILETMqnDRTTISRALSQNRELKEQLAELqSGFVKL 580
Cdd:PRK03918 492 ----------ESELIKLKELA---------------EQLKELEEKLKKY--NLEELEKKAEEYEKLKEKLIKL-KGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 581 TNENMEITSALQSEqhvKRELGKKLGELQEKLSELKEtvELKSQEAQSLQQQrDQYLGHLQQYVAAYQQLT---SEKEVL 657
Cdd:PRK03918 544 LKKELEKLEELKKK---LAELEKKLDELEEELAELLK--ELEELGFESVEEL-EERLKELEPFYNEYLELKdaeKELERE 617
|
490 500 510
....*....|....*....|....*....|....*...
gi 1955630604 658 HNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 695
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
212-655 |
3.40e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 212 EKLKQQNQEITDQLEEEKKECHQKQGALREQLQVhiqtigilvSEKAELQTALAHTQHAARQKEGE----SEDLASRLQY 287
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK---------AEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEE 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 288 SRRRVGELERALSAvstqQKKADRYNKELTKERDALRL-----------ELYKNTQSNEDLKQEKSELEEKLRV-LVTEK 355
Cdd:PTZ00121 1403 DKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAkkkaeeakkadEAKKKAEEAKKAEEAKKKAEEAKKAdEAKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 356 AGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQL-QMERDKYAENLKGESAMW 434
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkKAEEKKKADELKKAEELK 1558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 435 RQRMQQMSEQVHTLREEKECSMSRVQEL---ETSLAELRNQMEPPAGPSEVEQQLQAE-----AEHLRKELEGLAGQLQA 506
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAkkaEEARIEEVMKLYEEEKKMKAEEAKKAEeakikAEELKKAEEEKKKVEQL 1638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 507 QVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQI--LETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNEN 584
Cdd:PTZ00121 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAeeAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630604 585 MEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKE 655
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
211-500 |
4.00e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 4.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 211 IEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAhtqhaarqkEGESEDLASRLQYSRR 290
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN---------DLEARLSHSRIPEIQA 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 291 RVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLE 370
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 371 mtelllqqfssrceapDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYaenlkgesamwRQRMQQMSEQVHTLRE 450
Cdd:TIGR02169 879 ----------------DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK-----------RKRLSELKAKLEALEE 931
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1955630604 451 EkecsmsrvqelETSLAELRNQMEPPAGPSEVEQQLQAEAEHLRKELEGL 500
Cdd:TIGR02169 932 E-----------LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
257-712 |
4.52e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.15 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 257 KAELQTALahtQHAARQKEGESEDLASrlqysrrrVGELERALSAVstqqKKADRYNKELtkerDALRLELyknTQSNED 336
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 337 LKQEKSELE--EKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQL--QQAMEERAQLEahlgqvmes 412
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQAA--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 413 vrqlqmerdkYAENLkgesamwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMEPPAGPSEVEQQLQAEAE 491
Cdd:PRK11281 165 ----------LYANS--------QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQ 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 492 HLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtTISRALSQNRELKEQLA 571
Cdd:PRK11281 227 KQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--LVAQELEINLQLSQRLL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 572 ELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELKSQEAQ------SLQQQ 632
Cdd:PRK11281 296 KATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleqfEINQQ 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 633 RDQyLGHLQQYVAAYQQLTSEK--EVLHNQLLlqtQLVDqlqqqeaqgkavaemARQELQEtqerleaatQQNQQLRAQL 710
Cdd:PRK11281 376 RDA-LFQPDAYIDKLEAGHKSEvtDEVRDALL---QLLD---------------ERRELLD---------QLNKQLNNQL 427
|
..
gi 1955630604 711 SL 712
Cdd:PRK11281 428 NL 429
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
189-688 |
4.96e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 4.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 189 RYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQgalrEQLQVHIQTIGILVSEKAELQTALAHTq 268
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHP- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 269 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ----QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSEL 344
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQltseRKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 345 EEKLRVLvtekagmQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQlQMERDKYA 424
Cdd:TIGR00618 594 VRLQDLT-------EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ-ERVREHAL 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 425 ENLKGESAMWRQR------MQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEppagpsEVEQQLQAEAEHLRKELE 498
Cdd:TIGR00618 666 SIRVLPKELLASRqlalqkMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFN------EIENASSSLGSDLAARED 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 499 GLAGQLQaqvqdneglsrlnreqeerlleleraaelwgeqaEARRQILETMQndrttiSRALSQNRELKEQLAELQSGfv 578
Cdd:TIGR00618 740 ALNQSLK----------------------------------ELMHQARTVLK------ARTEAHFNNNEEVTAALQTG-- 777
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 579 kltnenmeitsalQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLH 658
Cdd:TIGR00618 778 -------------AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
490 500 510
....*....|....*....|....*....|.
gi 1955630604 659 NQL-LLQTQLVDQLQQQEAQGKAVAEMARQE 688
Cdd:TIGR00618 845 GEItHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
206-721 |
6.66e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 6.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 206 QLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRL 285
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 286 QYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELykntqsnEDLKQEKSELEEKLRVLVTEKAG-MQLNLEE 364
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL-------DDRNMEVQRLEALLKAMKSECQGqMERQMAA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 365 LQKK---LEMTELLLQQFSSrceapdANQQLQQAMEE----RAQLEAHLGQVMESVRQLQmERDKYAENLKGESAMWRQR 437
Cdd:pfam15921 453 IQGKnesLEKVSSLTAQLES------TKEMLRKVVEEltakKMTLESSERTVSDLTASLQ-EKERAIEATNAEITKLRSR 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 438 MQQMSEQVHTLREEK--------ECSMSRVQ--ELETSLAELRNQMEP----------PAGPSEVEQ-QLQAEAEHLRKE 496
Cdd:pfam15921 526 VDLKLQELQHLKNEGdhlrnvqtECEALKLQmaEKDKVIEILRQQIENmtqlvgqhgrTAGAMQVEKaQLEKEINDRRLE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 497 LEGLA----------GQLQAQVQD---------NEGLSRLNREQEERLLELERAaelwgEQAEARRQILETMQNDRTTIS 557
Cdd:pfam15921 606 LQEFKilkdkkdakiRELEARVSDlelekvklvNAGSERLRAVKDIKQERDQLL-----NEVKTSRNELNSLSEDYEVLK 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 558 RALSQNRE--------LKEQLAELQSGFVKLTN--ENMEITS--ALQSEQHVKRELGKKLGE---LQEKLSELKETVELK 622
Cdd:pfam15921 681 RNFRNKSEemetttnkLKMQLKSAQSELEQTRNtlKSMEGSDghAMKVAMGMQKQITAKRGQidaLQSKIQFLEEAMTNA 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 623 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQlllqtqlVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 702
Cdd:pfam15921 761 NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ-------ERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
|
570
....*....|....*....
gi 1955630604 703 NQQLRAQLSLMAHPGEGDG 721
Cdd:pfam15921 834 SVRLKLQHTLDVKELQGPG 852
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
289-503 |
8.12e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 8.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 289 RRRVGELERALSAVSTQQKKADRYNkelTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 368
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLA---ELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 369 LEMTELLLQQFSSRCEApDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTL 448
Cdd:COG4913 325 LDELEAQIRGNGGDRLE-QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1955630604 449 REEkecsmsrvqeletsLAELRNQmeppagpsevEQQLQAEAEHLRKELEGLAGQ 503
Cdd:COG4913 404 EEA--------------LAEAEAA----------LRDLRRELRELEAEIASLERR 434
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
180-912 |
8.58e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 8.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 180 SANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAE 259
Cdd:pfam15921 84 SHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 260 L----QTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKA-----DRYNKELTKERDALRLELYKn 330
Cdd:pfam15921 164 MledsNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSlgsaiSKILRELDTEISYLKGRIFP- 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 331 tqSNEDLKQEKSELEEKLRVLVTEKagmQLNLEEL--QKKLEMTELLLQQFSSRCEAPDANQQL----QQAMEERAQLEA 404
Cdd:pfam15921 243 --VEDQLEALKSESQNKIELLLQQH---QDRIEQLisEHEVEITGLTEKASSARSQANSIQSQLeiiqEQARNQNSMYMR 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 405 HLGQVMESVRQLQMErdkyaenLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEP-PAGPSEVE 483
Cdd:pfam15921 318 QLSDLESTVSQLRSE-------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKlLADLHKRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 484 QQLQAEAEHLRKELEGLAG------QLQAQVQD-NEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMqndrTTI 556
Cdd:pfam15921 391 KELSLEKEQNKRLWDRDTGnsitidHLRRELDDrNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKV----SSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 557 SRALSQNRE-LKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGElqekLSELKETVELKSQEAQSLQQQRDq 635
Cdd:pfam15921 467 TAQLESTKEmLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE----ITKLRSRVDLKLQELQHLKNEGD- 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 636 YLGHLQQYVAAYQQLTSEK----EVLHNQLLLQTQLVDQ-------LQQQEAQGKAVAEMARQELQETQERLEAATQQNQ 704
Cdd:pfam15921 542 HLRNVQTECEALKLQMAEKdkviEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIR 621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 705 QLRAQLSLMAhpgegdgLDREEEEDEEEEEEEAVA-VPQPMPSIPEDLESREAMVaffNSAVASAEEEQARLRGQLKEQR 783
Cdd:pfam15921 622 ELEARVSDLE-------LEKVKLVNAGSERLRAVKdIKQERDQLLNEVKTSRNEL---NSLSEDYEVLKRNFRNKSEEME 691
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 784 VRCRRLAHLLASAQKEPEAA----APAPGTGGDSV-----CGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRC 854
Cdd:pfam15921 692 TTTNKLKMQLKSAQSELEQTrntlKSMEGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEK 771
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630604 855 IQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELVLR 912
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR 829
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
442-859 |
1.64e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 52.27 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 442 SEQVHTLREEKECSMSRVQELETSLAELRNQMEPPAG-PSEVEQQLQAEAEHLRKELEGLAGQLQ---AQVQDNEGLSRL 517
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEaESDLEQDYQAASDHLNLVQTALRQQEKierYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 518 NreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNMEITSALQSEQHV 597
Cdd:PRK04863 365 E------------------EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL------DVQQTRAIQYQQAV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 598 KR-ELGKKLGEL----QEKLSELKETVELKSQEAQ----SLQQQRDQYLGHLQQYVAAYQqltsekevlhnqllLQTQLV 668
Cdd:PRK04863 421 QAlERAKQLCGLpdltADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSQFEQAYQ--------------LVRKIA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 669 DQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSLMAHpgegdglDREEEEDEEEEEEEAVAVPQPMPSIP 748
Cdd:PRK04863 487 GEVSRSEAWDVA------RELLRRLREQRHLAEQLQQLRMRLSELEQ-------RLRQQQRAERLLAEFCKRLGKNLDDE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 749 EDLES----REAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcgETHRALQG 824
Cdd:PRK04863 554 DELEQlqeeLEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEF--EDSQDVTE 631
|
410 420 430
....*....|....*....|....*....|....*
gi 1955630604 825 AMEKLQSRFMELMQEKADLKERVEELEHRCIQLSG 859
Cdd:PRK04863 632 YMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
256-717 |
1.96e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 52.26 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 256 EKAELQTALAHTQHAARQKEGESEDlasRLQYSRRRVGELERALSAVSTQ-QKKADRYNKELTKERDALRLELYKntqsn 334
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQY---RLVEMARELEELSARESDLEQDyQAASDHLNLVQTALRQQEKIERYQ----- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 335 EDLkqekSELEEKLRVLVTEKAGMQLNLEELQKKLEMTEL----LLQQFSSRCEAPDANQ----QLQQAMeeraqleahl 406
Cdd:COG3096 354 EDL----EELTERLEEQEEVVEEAAEQLAEAEARLEAAEEevdsLKSQLADYQQALDVQQtraiQYQQAV---------- 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 407 gQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmeppAGPSEVEQQL 486
Cdd:COG3096 420 -QALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKI----AGEVERSQAW 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 487 QAEAEHLRKeleglAGQLQAQVQDNEGLSRlnreqeerlleleraaelwgEQAEARRQiletmqndrttisraLSQNREL 566
Cdd:COG3096 495 QTARELLRR-----YRSQQALAQRLQQLRA--------------------QLAELEQR---------------LRQQQNA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 567 KEQLAELQSGFvkltneNMEITSALqseqhvkrelgkklgELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAA 646
Cdd:COG3096 535 ERLLEEFCQRI------GQQLDAAE---------------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630604 647 YQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAV----AEMARQELQETQERLEAAtQQNQQLRAQLSLMAHPG 717
Cdd:COG3096 594 IKELAARAPAWLAAQDALERLREQSGEALADSQEVtaamQQLLEREREATVERDELA-ARKQALESQIERLSQPG 667
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
203-697 |
2.21e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 203 TNKQLNITIEKLKQQNQEItDQLEEEKKECHQKQGAL---REQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESE 279
Cdd:COG4717 62 QGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEELeelEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 280 --DLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRL----ELYKNTQSNEDLKQEKSELEEKLRVLVT 353
Cdd:COG4717 141 laELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLateeELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 354 EKAGMQLNLEEL---------QKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYA 424
Cdd:COG4717 221 ELEELEEELEQLeneleaaalEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 425 ENLKGESAMWRQRM----QQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEppagpSEVEQQLQAEAEHLRKELEGL 500
Cdd:COG4717 301 GKEAEELQALPALEeleeEELEELLAALGLPPDLSPEELLELLDRIEELQELLR-----EAEELEEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 501 AGqlQAQVQDNEGLSRlnreqeerlleleraaelWGEQAEARRQILETMqndrttisralsqnRELKEQLAELQSGFVKL 580
Cdd:COG4717 376 LA--EAGVEDEEELRA------------------ALEQAEEYQELKEEL--------------EELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 581 tnenmeitsalqSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnq 660
Cdd:COG4717 422 ------------LEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAEL--- 485
|
490 500 510
....*....|....*....|....*....|....*..
gi 1955630604 661 lllqtqlvdqlqQQEAQGKAVAEMARQELQETQERLE 697
Cdd:COG4717 486 ------------RELAEEWAALKLALELLEEAREEYR 510
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-510 |
5.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 5.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 335 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEA---HLGQVME 411
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDAssdDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 412 SVRQLQMERDKYAE---NLKGESAMWRQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMEPPAGPSEVEQQLQ 487
Cdd:COG4913 693 QLEELEAELEELEEeldELKGEIGRLEKELEQAEEELDELQDRLEaAEDLARLELRALLEERFAAALGDAVERELRENLE 772
|
170 180
....*....|....*....|...
gi 1955630604 488 AEAEHLRKELEGLAGQLQAQVQD 510
Cdd:COG4913 773 ERIDALRARLNRAEEELERAMRA 795
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
207-708 |
5.74e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 5.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 207 LNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKaELQTALAHTQhaARQKEGESEDLASRLQ 286
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDK-EKQVSLLLIQ--ITEKENKMKDLTFLLE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 287 YSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKagmQLNLEELQ 366
Cdd:pfam05483 265 ESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK---EAQMEELN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 367 KKLEMTELLLQQF-SSRCEAPDANQQLQQAMEERAqleahlgqvmESVRQLQMERDKYAENLkgesamwrqrmqqmsEQV 445
Cdd:pfam05483 342 KAKAAHSFVVTEFeATTCSLEELLRTEQQRLEKNE----------DQLKIITMELQKKSSEL---------------EEM 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 446 HTLREEKECSMsrvQELETSLAELRNQMEPpagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqEERL 525
Cdd:pfam05483 397 TKFKNNKEVEL---EELKKILAEDEKLLDE-------KKQFEKIAEELKGKEQELIFLLQAREKEIHDL-------EIQL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 526 LELERAAELWGEQAEARRQILETMQNDRTTIS----RALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQhvkrEL 601
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDLKTELEKEKLKNIELTahcdKLLLENKELTQEASDMT---LELKKHQEDIINCKKQEE----RM 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 602 GKKLGELQEKLSELKETVELKSQEaqsLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQ-EAQGKA 680
Cdd:pfam05483 533 LKQIENLEEKEMNLRDELESVREE---FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQiENKNKN 609
|
490 500
....*....|....*....|....*...
gi 1955630604 681 VAEMArqelQETQERLEAATQQNQQLRA 708
Cdd:pfam05483 610 IEELH----QENKALKKKGSAENKQLNA 633
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
212-710 |
8.66e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 8.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 212 EKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTI-GILVSEKAELQTALAHTQHAARQKEGESEDLASRLqysrR 290
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRARLEALL----A 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 291 RVG-ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEK----AGMQLNLEEL 365
Cdd:COG4913 370 ALGlPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDAL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 366 QKKLEMT--------ELLlqqfssrcEAPDANQQLQQAME-----ERAQL---EAHLGQVMESVRQLQMerdkyaenlkg 429
Cdd:COG4913 450 AEALGLDeaelpfvgELI--------EVRPEEERWRGAIErvlggFALTLlvpPEHYAAALRWVNRLHL----------- 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 430 esamwRQRMQqmSEQVHTLREEKEcsmsRVQELETSLAELRNQMEPPAGPsEVEQQLQAEAEHLR----KEL--EGLAGQ 503
Cdd:COG4913 511 -----RGRLV--YERVRTGLPDPE----RPRLDPDSLAGKLDFKPHPFRA-WLEAELGRRFDYVCvdspEELrrHPRAIT 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 504 LQAQVQDNEGLSRLNreqeerllELERAAELW--GEQAEARRQILE----TMQNDRTTISRALSQNRELKEQLAELQSGF 577
Cdd:COG4913 579 RAGQVKGNGTRHEKD--------DRRRIRSRYvlGFDNRAKLAALEaelaELEEELAEAEERLEALEAELDALQERREAL 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 578 VKLTNENMEITSALQSEQHVkRELGKKLGELQE---KLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEK 654
Cdd:COG4913 651 QRLAEYSWDEIDVASAEREI-AELEAELERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL 729
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630604 655 EVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQL 710
Cdd:COG4913 730 DELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRA 785
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
342-690 |
8.74e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 8.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 342 SELEEKLRVLVTEKAgMQLNLEELQKKL---EMTELLLqqfssrcEAPDANQQLQQAMEERAQLEAHLGQVMEsvrQLQM 418
Cdd:TIGR02169 194 DEKRQQLERLRRERE-KAERYQALLKEKreyEGYELLK-------EKEALERQKEAIERQLASLEEELEKLTE---EISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 419 ERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEPPAgpsEVEQQLQAEAEHLRKELE 498
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE---ERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 499 GLAGQLQAQVQDNEGLS--------RLNrEQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQL 570
Cdd:TIGR02169 340 ELEREIEEERKRRDKLTeeyaelkeELE-DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 571 AElqsgfvKLTNENMEITSALQseqhvkrelgkKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQL 650
Cdd:TIGR02169 419 SE------ELADLNAAIAGIEA-----------KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1955630604 651 TSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQ 690
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
190-853 |
9.13e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.96 E-value: 9.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 190 YQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEE---EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAH 266
Cdd:PRK04863 416 YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEateELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAW 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 267 tqHAARQKEGESED---LASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKerdalrlelykNTQSNEDLKQEKSE 343
Cdd:PRK04863 496 --DVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK-----------NLDDEDELEQLQEE 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 344 LEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRC----EAPDANQQLQ----QAMEERAQLEAHLGQVMESVRQ 415
Cdd:PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawlAAQDALARLReqsgEEFEDSQDVTEYMQQLLERERE 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 416 LQMERDKYAEnlkgesamwrqRMQQMSEQVHTLREEKECSMSRVQELE-----TSLAELRNQM--------EPPAGPSE- 481
Cdd:PRK04863 643 LTVERDELAA-----------RKQALDEEIERLSQPGGSEDPRLNALAerfggVLLSEIYDDVsledapyfSALYGPARh 711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 482 --VEQQLQAEAEHLrKELEGLAGQLQAQVQDNEGL--SRLNREQEERLLELERAAELW-----------GEqaEARRQIL 546
Cdd:PRK04863 712 aiVVPDLSDAAEQL-AGLEDCPEDLYLIEGDPDSFddSVFSVEELEKAVVVKIADRQWrysrfpevplfGR--AAREKRI 788
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 547 ETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVkRELGKKLGELQEKLSELKETVelksqea 626
Cdd:PRK04863 789 EQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAEL-RQLNRRRVELERALADHESQE------- 860
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 627 qslQQQRDQYLgHLQQYVAAYQQLTSEKEVLHNQLL------LQTQLvDQLQQQEA----QGKAVAEMARQ--ELQETQE 694
Cdd:PRK04863 861 ---QQQRSQLE-QAKEGLSALNRLLPRLNLLADETLadrveeIREQL-DEAEEAKRfvqqHGNALAQLEPIvsVLQSDPE 935
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 695 RLEAATQQNQQLRAQLSLMAhpGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVASAEEEQAR 774
Cdd:PRK04863 936 QFEQLKQDYQQAQQTQRDAK--QQAFALTEVVQRRAHFSYEDAA----------EMLAKNSDLNEKLRQRLEQAEQERTR 1003
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955630604 775 LRGQLKEQRVRCRRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKAdlKERVEELEHR 853
Cdd:PRK04863 1004 AREQLRQAQAQLAQYNQVLASLKSSYDAKR------------QMLQELKQELQDLGVPADSGAEERA--RARRDELHAR 1068
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
480-710 |
9.53e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 9.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 480 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSrlnreqeerlleleraaelwgeQAEARRQILETMQNDRTTISRA 559
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD----------------------LSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 560 LSQNRELKEQLAELQSgfvKLTNENMEITSALQSEqhVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 639
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630604 640 LQQYVA-AYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQL 710
Cdd:COG3206 307 LQQEAQrILASLEAELEALQARE---ASLQAQLAQLEARLAELPE-LEAELRRLEREVEVARELYESLLQRL 374
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-474 |
1.04e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 182 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEekkechqkqgaLREQLQVHIQTIGILVSEKAELQ 261
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER-----------LKETIIKNNSEIKDLTNQDSVKE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 262 TALahtqhaarqkegesEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEK 341
Cdd:TIGR04523 454 LII--------------KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 342 SELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERD 421
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1955630604 422 kyaeNLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQME 474
Cdd:TIGR04523 600 ----DLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
435-863 |
1.05e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 435 RQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEP-PAGPSEVEQQLQAEAEHLRKELEGLAGQ--LQAQVQDN 511
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEElSARESDLEQDYQAASDHLNLVQTALRQQekIERYQEDL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 512 EGLS-RLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNMEITSA 590
Cdd:COG3096 357 EELTeRLE------------------EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DVQQTRA 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 591 LQSEQHVKR-ELGKKLGEL--------QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSekevlhnql 661
Cdd:COG3096 413 IQYQQAVQAlEKARALCGLpdltpenaEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK--------- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 662 llqtqLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSlmahpgEGDGLDREEEEDEEEEEEEAVAVP 741
Cdd:COG3096 484 -----IAGEVERSQAWQTA------RELLRRYRSQQALAQRLQQLRAQLA------ELEQRLRQQQNAERLLEEFCQRIG 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 742 QPMPS---IPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAhllasaQKEPE-AAAPAPGTGGDSVCGE 817
Cdd:COG3096 547 QQLDAaeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA------ARAPAwLAAQDALERLREQSGE 620
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1955630604 818 T---HRALQGAMEKLQSRFMELMQEKADLKERVEELE---HRCIQLSGETDT 863
Cdd:COG3096 621 AladSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPGGAEDP 672
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
271-546 |
1.51e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.97 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 271 ARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKNTQSNEDLKQEKSELEEKL 348
Cdd:pfam05557 306 ARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRaiLESYDKELTMSNYSPQLLERIEEA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 349 RVLVTEkagMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQL---QQAMEERAQLEAHLGQVMESVRQLQMERDKYAE 425
Cdd:pfam05557 386 EDMTQK---MQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQAlrqQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 426 nlkgesamwRQRMQQMSEQVHTLREEKECSMSRVqeletslaeLRNQMEPPAgpsEVEQQLQAEAEHLRKELEGLAGQLQ 505
Cdd:pfam05557 463 ---------QKNELEMELERRCLQGDYDPKKTKV---------LHLSMNPAA---EAYQQRKNQLEKLQAEIERLKRLLK 521
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1955630604 506 AQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQIL 546
Cdd:pfam05557 522 KLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRL 562
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
286-505 |
2.11e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 286 QYSRRRVGELERALSAVSTQqkkADRYNKELTKERDALR--LELYKNTQSNEDLK---QEKSELEEKLRVLVTEKAGMQL 360
Cdd:COG3206 164 QNLELRREEARKALEFLEEQ---LPELRKELEEAEAALEefRQKNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 361 NLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesamwrqrmQQ 440
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ----------QE 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630604 441 MSEQVHTLREEKECSMSRVQELETSLAELRNQMeppAGPSEVEQQ---LQAEAEHLRKELEGLAGQLQ 505
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARL---AELPELEAElrrLEREVEVARELYESLLQRLE 375
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-498 |
2.12e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 182 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQ-------NQEITDQLEEEKKECHQkqgaLREQLQVHIQTIGILV 254
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEltnseseNSEKQRELEEKQNEIEK----LKKENQSYKQEIKNLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 255 SEKAELQTALAHTQHAARQKEGESEDLASRLQysrrrvgELERALSAVSTQQKKADRYNKELTKERDALRLELykntqsn 334
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKE-------LLEKEIERLKETIIKNNSEIKDLTNQDSVKELII------- 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 335 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL-----EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQV 409
Cdd:TIGR04523 457 KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELkskekELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 410 MESVRQLQ-----MERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEP-PAGPSEVE 483
Cdd:TIGR04523 537 ESKISDLEdelnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEkEKKISSLE 616
|
330
....*....|....*.
gi 1955630604 484 QQLQ-AEAEHLRKELE 498
Cdd:TIGR04523 617 KELEkAKKENEKLSSI 632
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
598-853 |
3.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 598 KRELGKKLGELQEKLSELKETvelkSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnQLLLQTQLVDQLQQQEAQ 677
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA----HEALEDAREQIEL-LEPIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 678 GKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREeeedeeeeeeeavavpqpmpsipEDLESReam 757
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-----------------------EQLERE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 758 vaffnsaVASAEEEQARLRGQLKEQRVRCRRL-------AHLLASAQKEPEAAAPApgtggdsvCGETHRALQGAMEKLQ 830
Cdd:COG4913 347 -------IERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEA--------LEEELEALEEALAEAE 411
|
250 260
....*....|....*....|...
gi 1955630604 831 SRFMELMQEKADLKERVEELEHR 853
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERR 434
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
205-715 |
3.98e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 205 KQLNITIEKLKQQNQEITDQLEEEKKECHQKqgalreqLQVHIQTIGILVSEKAELQTALAHTQHAaRQKEGESEDLASR 284
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHER-------KQVLEKELKHLREALQQTQQSHAYLTQK-REAQEEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 285 LQYSRRRVGELERALSAVSTQQKKADRYNKELtkerdALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEE 364
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAA-----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 365 LQKKLEMTELLLQQFSSRCEAPDANQQ-------------LQQAMEERAQLEAHLGQVMESVRQ----LQMERDKYAENL 427
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVatsireiscqqhtLTQHIHTLQQQKTTLTQKLQSLCKeldiLQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 428 KGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMEPPAGPSEVEQQLQAEAEHLRKELE--GLAGQLQ 505
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRkkAVVLARL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 506 AQVQDNEGL---SRLNREQEERLLELERAAELWGEQAEARRQILET-MQNDRTTISRALSQNRELKEQLAELQSGFVKLT 581
Cdd:TIGR00618 497 LELQEEPCPlcgSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETsEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 582 ---NENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQqrdqylghlqqyVAAYQQLTSEKEVLH 658
Cdd:TIGR00618 577 qcdNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD------------VRLHLQQCSQELALK 644
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630604 659 NQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAH 715
Cdd:TIGR00618 645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ 701
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
182-875 |
5.74e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 182 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQ----------GALREQLQVHIQTIG 251
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRaeleevdkefAETRDELKDYREKLE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 252 ILVSEKAELQTALAHTQHAARQKEGESEDLASrlqysrrrvgELERALSAVstqqkkadrynKELTKERDALRLELYKNT 331
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNA----------AIAGIEAKI-----------NELEEEKEDKALEIKKQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 332 QSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLqqameeraqLEAHLGQVME 411
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEV---------LKASIQGVHG 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 412 SVRQLQMERDKYA--------------------------ENLKGESA-----MWRQRMQQMSEQVHTLREEKECSMS--- 457
Cdd:TIGR02169 526 TVAQLGSVGERYAtaievaagnrlnnvvveddavakeaiELLKRRKAgratfLPLNKMRDERRDLSILSEDGVIGFAvdl 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 458 ---------------RVQELETSLAELRNQM-------------EP----------PAGPSEVEQQLQAEAEHLRKELEG 499
Cdd:TIGR02169 606 vefdpkyepafkyvfGDTLVVEDIEAARRLMgkyrmvtlegelfEKsgamtggsraPRGGILFSRSEPAELQRLRERLEG 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 500 LAGQLQAQVQDNEGLSRLNREQEErlleleraaelwgEQAEARRQIlETMQNDRTTISRALSQNRELKEQLAE-LQSGFV 578
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQ-------------ELSDASRKI-GEIEKEIEQLEQEEEKLKERLEELEEdLSSLEQ 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 579 KLTNENMEITsalqseqhvkrELGKKLGELQEKLSELKETVE-LKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVL 657
Cdd:TIGR02169 752 EIENVKSELK-----------ELEARIEELEEDLHKLEEALNdLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 658 HNQLLLQTQLVDQ----LQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGdgldreeeedeeee 733
Cdd:TIGR02169 821 LNRLTLEKEYLEKeiqeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD-------------- 886
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 734 eeeavavpqpmpsIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGD- 812
Cdd:TIGR02169 887 -------------LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSl 953
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955630604 813 SVCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQR 875
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
208-472 |
7.59e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.97 E-value: 7.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 208 NITIEKLKQQNQEITDQLEEEKKECHQKQGALRE---------QLQVHIQTIGILVSEKAELQ----TALAHTQHAARQK 274
Cdd:PRK10929 101 NMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREisdslsqlpQQQTEARRQLNEIERRLQTLgtpnTPLAQAQLTALQA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 275 EgesedLASRlqysRRRVGELERA-LSAVSTQqkkadrynkELTKerdaLRLELYKN--TQSNEDLKQEKSELEEkLRVL 351
Cdd:PRK10929 181 E-----SAAL----KALVDELELAqLSANNRQ---------ELAR----LRSELAKKrsQQLDAYLQALRNQLNS-QRQR 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 352 VTEKAgmqlnleelqkkLEMTELLLQQFSSRCEAPDA----NQQLQQAMEERAQ-LEAHLGQVMESVRQLQMERDkyAEN 426
Cdd:PRK10929 238 EAERA------------LESTELLAEQSGDLPKSIVAqfkiNRELSQALNQQAQrMDLIASQQRQAASQTLQVRQ--ALN 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1955630604 427 LKGESAMWRQRMQQMSE----QVHTLREekecsMSRVQELETSLAELRNQ 472
Cdd:PRK10929 304 TLREQSQWLGVSNALGEalraQVARLPE-----MPKPQQLDTEMAQLRVQ 348
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
314-624 |
1.03e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 314 KELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqQLQ 393
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEISSELPELREELEKLEKEVKELEELKE------EIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 394 QAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK--GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRN 471
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 472 QMEppagpsEVEQQLQ------AEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARrqi 545
Cdd:PRK03918 322 EIN------GIEERIKeleekeERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE--- 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 546 LETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNENMEITSA---------LQSEQHVKRELGKKLGELQEKLSELK 616
Cdd:PRK03918 393 LEELEKAKEEIEEEIS---KITARIGELKKEIKELKKAIEELKKAkgkcpvcgrELTEEHRKELLEEYTAELKRIEKELK 469
|
....*...
gi 1955630604 617 ETVELKSQ 624
Cdd:PRK03918 470 EIEEKERK 477
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
213-898 |
1.22e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 213 KLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTalahTQHAARQKEGESEDLASRL---QYSR 289
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLES----SREIVKSYENELDPLKNRLkeiEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 290 RRVGELERALSAVSTQQKKADRYNKELT-----------------------------KERDALRLELYKNTQSNEDLKQE 340
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSELElkmekvfqgtdeqlndlyhnhqrtvrekeRELVDCQRELEKLNKERRLLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 341 KSELEeklrvlvTEKAGMQLNLEELQKKLEMTELLLQQFSSRCE------APDANQQLQQA-------MEERAQLEAHL- 406
Cdd:TIGR00606 342 KTELL-------VEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgferGPFSERQIKNFhtlvierQEDEAKTAAQLc 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 407 GQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLR------EEKECSMSRVQELETSLAELRNQMePPAGPS 480
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKfvikelQQLEGSSDRILELDQELRKAEREL-SKAEKN 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 481 EVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQN------DRT 554
Cdd:TIGR00606 494 SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSllgyfpNKK 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 555 TISRALSQNRELKEQLAElqsgfvKLTNENMEITSALQSEQHVKRELGKK---LGELQEKLSELKETVELKS------QE 625
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRD------RLAKLNKELASLEQNKNHINNELESKeeqLSSYEDKLFDVCGSQDEESdlerlkEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 626 AQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLeaatqQNQQ 705
Cdd:TIGR00606 648 IEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL-----KKKE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 706 LRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAvAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQA------RLRGQL 779
Cdd:TIGR00606 723 KRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimeRFQMEL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 780 KEQRvrcRRLAHLLASAQkepeaaapapGTGGDSVCGETHRALQGAMEKLQ---SRFMELMQEKADLKERVEELEHRCIQ 856
Cdd:TIGR00606 802 KDVE---RKIAQQAAKLQ----------GSDLDRTVQQVNQEKQEKQHELDtvvSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1955630604 857 LSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEE 898
Cdd:TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
618-705 |
1.27e-04 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 44.50 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 618 TVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVlhNQLL--------------LQTQLVDQLQQQEAQGKAVAE 683
Cdd:NF038305 102 TRRLSTQALQQINQQAGQQETQLQQQLNQLQAQTSPQQL--NQLLkseqkqgqalasgqLPEEQKEQLQQFKSNPQALDK 179
|
90 100
....*....|....*....|..
gi 1955630604 684 MARQELQETQERLEAATQQNQQ 705
Cdd:NF038305 180 FLAQQLTQIRTQAEEAEKQARL 201
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
282-507 |
1.37e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 282 ASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLN 361
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 362 LEELQKKLEMTELLLQQFSSRCE-----APDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQ 436
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630604 437 RMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMeppagpseveQQLQAEAEHLRKELEGLAGQLQAQ 507
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL----------AELQQEAEELEALIARLEAEAAAA 239
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
253-713 |
1.55e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 253 LVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKN 330
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlCNLLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 331 TQSNEDLKQEKSELEEKlrvlVTEKAGMQLNLEELQKKLEMTELLLQQfssrceapdanqqlqqameERAQLEAH--LGQ 408
Cdd:pfam05483 163 TCARSAEKTKKYEYERE----ETRQVYMDLNNNIEKMILAFEELRVQA-------------------ENARLEMHfkLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 409 VMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELEtslaelrnqmEPPAGPSEVEQQLQA 488
Cdd:pfam05483 220 DHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE----------EKTKLQDENLKELIE 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 489 EAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqEERLLELERAAELWGEQAEARrqiLETMQNDRTTISRALSQNRELKE 568
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKAL-------EEDLQIATKTICQLTEEKEAQ---MEELNKAKAAHSFVVTEFEATTC 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 569 QLAELqsgfvkLTNENMEITSALQSEQHVKRELGKKLGELQEkLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQ 648
Cdd:pfam05483 360 SLEEL------LRTEQQRLEKNEDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAE 432
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630604 649 QLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLM 713
Cdd:pfam05483 433 ELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKL 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
664-913 |
1.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 664 QTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgldreeeedeeeeeeeavavpqp 743
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 744 mpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRvrcRRLAHLLASAQKEPEAAAPAPGTGGDSVcgethRALQ 823
Cdd:COG4942 69 -----RRIRALEQELAALEAELAELEKEIAELRAELEAQK---EELAELLRALYRLGRQPPLALLLSPEDF-----LDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 824 GAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKL 903
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
250
....*....|
gi 1955630604 904 LELQELVLRL 913
Cdd:COG4942 216 AELQQEAEEL 225
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-451 |
1.77e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 270 AARQKEGESEDLASRLQY--SRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLK-QEKSELEE 346
Cdd:COG4913 266 AARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 347 KLRVLVTEKAGMQLNLEELQKKLEMTELLL----QQFSSRCEApdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDK 422
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAE--AAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
170 180
....*....|....*....|....*....
gi 1955630604 423 yaenLKGESAMWRQRMQQMSEQVHTLREE 451
Cdd:COG4913 424 ----LEAEIASLERRKSNIPARLLALRDA 448
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
388-707 |
1.91e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 388 ANQQLQQAMEERAQLEAHLGQVmESVRQLQMERDKYAENLKGESAMWRQRMQQMS----EQVHTLREEKECSMSRVQELE 463
Cdd:TIGR00618 154 FAQFLKAKSKEKKELLMNLFPL-DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 464 TSLAELR---NQMEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEglsRLNREQEERLLELERAAELWGEQAe 540
Cdd:TIGR00618 233 EALQQTQqshAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE---RINRARKAAPLAAHIKAVTQIEQQ- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 541 aRRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTN---ENMEITSALQSEQHVKRELGKKLGELQE--KLSEL 615
Cdd:TIGR00618 309 -AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQHihTLQQQ 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 616 KETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 695
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
330
....*....|..
gi 1955630604 696 LEAATQQNQQLR 707
Cdd:TIGR00618 468 LKEREQQLQTKE 479
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
537-710 |
2.66e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 537 EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLtnenmeitsALQSEQHVKRELGKKLGELQEKLSELK 616
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 617 ETVELKSQEAQSLQQQRDQY-LGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 695
Cdd:COG4913 316 ARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170
....*....|....*
gi 1955630604 696 LEAATQQNQQLRAQL 710
Cdd:COG4913 396 LEEELEALEEALAEA 410
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
435-642 |
4.70e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 435 RQRMQQMSEQVHTLREEKEcSMSRVQELETSLAELRNQME--PPAGPSEVEQQLQAEAEHLRKELEGLAGQ---LQAQVQ 509
Cdd:COG4913 241 HEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAalRLWFAQRRLELLEAELEELRAELARLEAElerLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 510 DNEGlsRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALsqnRELKEQLAELQSGFVKLTNENMEITS 589
Cdd:COG4913 320 ALRE--ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1955630604 590 ALQSEQHvkrELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 642
Cdd:COG4913 395 ALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
565-711 |
6.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 565 ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKR--ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH--L 640
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlsELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvI 265
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630604 641 QQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKA-VAEMARQELQETQERLEAATQQNQQLRAQLS 711
Cdd:COG3206 266 QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqLQQEAQRILASLEAELEALQAREASLQAQLA 337
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
181-705 |
7.03e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 7.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 181 ANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEIT---DQLEEEKKECHQKQGALREQLQVHIQTIGILVSEK 257
Cdd:pfam01576 524 AQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAaayDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQ 603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 258 AELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALrlelyknTQSNEDL 337
Cdd:pfam01576 604 KKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDL-------VSSKDDV 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 338 KQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTElllqqfssrceapDANQQLQQAMeeraqleahlgQVMESvrqlQ 417
Cdd:pfam01576 677 GKNVHELERSKRALEQQVEEMKTQLEELEDELQATE-------------DAKLRLEVNM-----------QALKA----Q 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 418 MERDKYAENLKGEsamwrQRMQQMSEQVHTL-------REEKECSMSRVQELETSLAELRNQMEPPA-GPSEVEQQL--- 486
Cdd:pfam01576 729 FERDLQARDEQGE-----EKRRQLVKQVRELeaeledeRKQRAQAVAAKKKLELDLKELEAQIDAANkGREEAVKQLkkl 803
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 487 QAEAEHLRKELEGL-AGQLQAQVQDNEGLSRLNreqeerlleleraaelwGEQAEARRqiletMQNDRTTISRALSQNRE 565
Cdd:pfam01576 804 QAQMKDLQRELEEArASRDEILAQSKESEKKLK-----------------NLEAELLQ-----LQEDLAASERARRQAQQ 861
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 566 LKEQLA-ELQSGFVKltnenmeiTSALQSEqhvKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYV 644
Cdd:pfam01576 862 ERDELAdEIASGASG--------KSALQDE---KRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAER 930
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630604 645 AAYQQLTSEKEVLHNQlllQTQLVDQLQQQEAQGKAVAEMARQELQ----ETQERLEAATQQNQQ 705
Cdd:pfam01576 931 STSQKSESARQQLERQ---NKELKAKLQEMEGTVKSKFKSSIAALEakiaQLEEQLEQESRERQA 992
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
294-368 |
7.82e-04 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.79 E-value: 7.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630604 294 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 368
Cdd:COG4026 132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
391-710 |
8.04e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 8.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 391 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELR 470
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 471 NQmeppagpSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEG-LSRLNREQEERLLELeraaelwGEQAEARRQILETM 549
Cdd:pfam07888 115 EE-------KDALLAQRAAHEARIRELEEDIKTLTQRVLERETeLERMKERAKKAGAQR-------KEEEAERKQLQAKL 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 550 QNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRE---LGKKLGELQEKLSELKETVELKSQEA 626
Cdd:pfam07888 181 QQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEneaLLEELRSLQERLNASERKVEGLGEEL 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 627 QSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQ----TQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 702
Cdd:pfam07888 261 SSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGrarwAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERME 340
|
....*...
gi 1955630604 703 NQQLRAQL 710
Cdd:pfam07888 341 REKLEVEL 348
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
424-680 |
8.68e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 8.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 424 AENLKGESAMWRQRMQQMSEQVHTLREekecsmsRVQELETSLAELRNQmEPPAGPSEVEQQLQAEAEHLRKELEglagQ 503
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRK-------ELEEAEAALEEFRQK-NGLVDLSEEAKLLLQQLSELESQLA----E 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 504 LQAQVQDNEglSRLNREQeerlleleraaelwgEQAEARRQILETMQNDrTTISRALSQNRELKEQLAELQSgfvKLTNE 583
Cdd:COG3206 231 ARAELAEAE--ARLAALR---------------AQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSA---RYTPN 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 584 NMEITSALQSEQHVKRELGKklgELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAA---YQQLTSEKEVLHNQ 660
Cdd:COG3206 290 HPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELeaeLRRLEREVEVAREL 366
|
250 260
....*....|....*....|
gi 1955630604 661 LLLQTQLVDQLQQQEAQGKA 680
Cdd:COG3206 367 YESLLQRLEEARLAEALTVG 386
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
255-406 |
9.77e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 9.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 255 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERAL----SAVSTQQKKADRYNKEL-----TKERDALRL 325
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIkrleLEIEEVEARIKKYEEQLgnvrnNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 326 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrcEAPDANQQLQQAMEERAQLEAH 405
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE-----ELAELEAELEELEAEREELAAK 171
|
.
gi 1955630604 406 L 406
Cdd:COG1579 172 I 172
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
483-917 |
1.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 483 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALS- 561
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 562 -----QNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSEL----KETVELKSQEAQSLQQQ 632
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 633 RDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQtQLVDQLQQQEAQGKAVAEMA-----RQELQETQERLEAATQQNQQL- 706
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLallglGGSLLSLILTIAGVLFLVLGLl 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 707 --------RAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQ 778
Cdd:COG4717 287 allflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 779 LKEQRvrcrrLAHLLASAQKEPEaaapapgtggdsvcgethralqgamEKLQSRFMELmQEKADLKERVEELEHRCIQLS 858
Cdd:COG4717 367 ELEQE-----IAALLAEAGVEDE-------------------------EELRAALEQA-EEYQELKEELEELEEQLEELL 415
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1955630604 859 GEtdtigEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDR 917
Cdd:COG4717 416 GE-----LEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
308-909 |
1.05e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 308 KADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEapd 387
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE--- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 388 anqQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK--GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETS 465
Cdd:PRK03918 239 ---EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 466 LAELRNQMEppagpsEVEQQLQ------AEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQA 539
Cdd:PRK03918 316 LSRLEEEIN------GIEERIKeleekeERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 540 EARrqiLETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNENMEITSA---------LQSEQHVKRELGKKLGELQE 610
Cdd:PRK03918 390 EKE---LEELEKAKEEIEEEIS---KITARIGELKKEIKELKKAIEELKKAkgkcpvcgrELTEEHRKELLEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 611 KLSELKETVELKSQEAQSLQQQRdqylghlqqyvaayQQLTSEKEVLHNQlllqtQLVDQLQQQEaqgKAVAEMARQELQ 690
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELE--------------KVLKKESELIKLK-----ELAEQLKELE---EKLKKYNLEELE 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 691 ETQERLEAATQQNQQLRAQLSLMAhpgegDGLDREeeedeeeeeeeavavpqpmpsipEDLESREAMVaffNSAVASAEE 770
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLK-----KELEKL-----------------------EELKKKLAEL---EKKLDELEE 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 771 EQARLRGQLKEQRVRC-----RRLAHL---------LASAQKEPEaaapapgtggdsvcgETHRALQGAMEKLQSRFMEL 836
Cdd:PRK03918 571 ELAELLKELEELGFESveeleERLKELepfyneyleLKDAEKELE---------------REEKELKKLEEELDKAFEEL 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 837 MQEKADLKE---RVEEL-------EHRciQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLEL 906
Cdd:PRK03918 636 AETEKRLEElrkELEELekkyseeEYE--ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
...
gi 1955630604 907 QEL 909
Cdd:PRK03918 714 EKL 716
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
152-501 |
1.05e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 152 ESLRQLSQQLNGLVCESATCVNGEGPASSANLKDLESRYQQLAVALdssyvtnKQLNITIEKLKQQNQEITDQLEE-EKK 230
Cdd:COG4717 163 EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL-------AELEEELEEAQEELEELEEELEQlENE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 231 ECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKAD 310
Cdd:COG4717 236 LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 311 RYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQ 390
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 391 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKyaenlkgesAMWRQRMQQMSEQVHTLREEkecsmsrVQELETSLAELR 470
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDE---------EELEEELEELEEELEELEEE-------LEELREELAELE 459
|
330 340 350
....*....|....*....|....*....|.
gi 1955630604 471 NQMEpPAGPSEVEQQLQAEAEHLRKELEGLA 501
Cdd:COG4717 460 AELE-QLEEDGELAELLQELEELKAELRELA 489
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
579-720 |
1.51e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 42.44 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 579 KLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLghLQQYVAAYQQL-TSEKEVl 657
Cdd:COG1193 508 LLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEIL--EKAREEAEEILrEARKEA- 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955630604 658 hnqlllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGD 720
Cdd:COG1193 585 -------EELIRELREAQAEEEELKE-ARKKLEELKQELEEKLEKPKKKAKPAKPPEELKVGD 639
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
535-923 |
2.21e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 535 WGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvKRELGKKLGELQEKLSE 614
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE-----KLEKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 615 LKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQE 694
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 695 RLEaatQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEA--VAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQ 772
Cdd:COG4717 217 EAQ---EELEELEEELEQLENELEAAALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 773 ARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGEThRALQGAMEKLQSRFMELMQEKADLKERVEELEH 852
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEL-LELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 853 RCIQLSGETDTIGEYIALYQ--SQRAVLKERHREKEEYISRLA---------QDKEEMKVKLLELQELVLRLVGDRNEWH 921
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQLEELLgeleelleaLDEEELEEELEELEEELEELEEELEELR 452
|
..
gi 1955630604 922 GR 923
Cdd:COG4717 453 EE 454
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
225-654 |
2.37e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 225 LEEEKKECHQKQGALreqLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERalsavst 304
Cdd:pfam07888 32 LQNRLEECLQERAEL---LQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEE------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 305 QQKKADRYNKELTKERDALRLElykntqsNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKklemtelllqqfssrcE 384
Cdd:pfam07888 102 KYKELSASSEELSEEKDALLAQ-------RAAHEARIRELEEDIKTLTQRVLERETELERMKE----------------R 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 385 APDANQQLQQAMEERAQLEAHLGQVMESVRQLQMErdkyAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELET 464
Cdd:pfam07888 159 AKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE----FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEA 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 465 SLAELRnqmeppaGPSEVEQQLQAEAEHLRKELEGLAGQlQAQVQDNEGLSRLNREQEERLLELERAAELWGEQ--AEAR 542
Cdd:pfam07888 235 LLEELR-------SLQERLNASERKVEGLGEELSSMAAQ-RDRTQAELHQARLQAAQLTLQLADASLALREGRArwAQER 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 543 RQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNEnmeitsaLQSEQHVKRelgKKLGELQEKLSELKETVELK 622
Cdd:pfam07888 307 ETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVE-------LGREKDCNR---VQLSESRRELQELKASLRVA 376
|
410 420 430
....*....|....*....|....*....|..
gi 1955630604 623 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEK 654
Cdd:pfam07888 377 QKEKEQLQAEKQELLEYIRQLEQRLETVADAK 408
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
240-635 |
2.47e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 240 REQLQVHIQTIGILVSEKAELQTALAHTQHAArqkegesEDLASRLQYSRRRVGELERALSAVS----------TQQKKA 309
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRL-------VEMARELAELNEAESDLEQDYQAASdhlnlvqtalRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 310 DRYNKELtkerDALRLELYKNTQSNEDLKQEKSELEEKLRV-------LVTEKAGMQLNLEELQKK-------------- 368
Cdd:PRK04863 351 ERYQADL----EELEERLEEQNEVVEEADEQQEENEARAEAaeeevdeLKSQLADYQQALDVQQTRaiqyqqavqalera 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 369 ---LEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLG----------QVMESVRQLQMERDKyaenlkgeSAMW- 434
Cdd:PRK04863 427 kqlCGLPDLTADNAEDWLEEFQA--KEQEATEELLSLEQKLSvaqaahsqfeQAYQLVRKIAGEVSR--------SEAWd 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 435 --RQRMQQMSEQVHTLreekecsmSRVQELETSLAELRNQMeppagpseveqQLQAEAEHLRKELEGlagQLQAQVQDNE 512
Cdd:PRK04863 497 vaRELLRRLREQRHLA--------EQLQQLRMRLSELEQRL-----------RQQQRAERLLAEFCK---RLGKNLDDED 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 513 GLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQ 592
Cdd:PRK04863 555 ELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQ 634
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1955630604 593 seqhvkrelgkklgELQEKLSELKETVELKSQEAQSLQQQRDQ 635
Cdd:PRK04863 635 --------------QLLERERELTVERDELAARKQALDEEIER 663
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
183-908 |
2.48e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 183 LKDLESRYQQLAV----------ALDSSYVTNKQLNITIEKLKQQNQEITDQLE---EEKKECHQKQGALREQLQVHIQT 249
Cdd:pfam01576 28 LKELEKKHQQLCEeknalqeqlqAETELCAEAEEMRARLAARKQELEEILHELEsrlEEEEERSQQLQNEKKKMQQHIQD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 250 I--GILVSEKAELQTALAHTQHAARQKEGES-----EDLASRLQYSRRrvgELERALSAVSTQQKKADRYNKELTKERDA 322
Cdd:pfam01576 108 LeeQLDEEEAARQKLQLEKVTTEAKIKKLEEdilllEDQNSKLSKERK---LLEERISEFTSNLAEEEEKAKSLSKLKNK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 323 -------LRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEapDANQQLQQA 395
Cdd:pfam01576 185 heamisdLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLE--EETAQKNNA 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 396 MEERAQLEAHLGQVMESVRQLQMERDKyAENLKGESAmwrqrmqqmseqvhtlreekecsmsrvQELETSLAELRNQMEP 475
Cdd:pfam01576 263 LKKIRELEAQISELQEDLESERAARNK-AEKQRRDLG---------------------------EELEALKTELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 476 PAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDnegLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTT 555
Cdd:pfam01576 315 TAAQQELRSKREQEVTELKKALEEETRSHEAQLQE---MRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQA 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 556 ISRALSQNRELKEQLAElqsgfvKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQ 635
Cdd:pfam01576 392 ELRTLQQAKQDSEHKRK------KLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSS 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 636 YLGHLQQYVAAYQQLTSEKevlhnqlllqTQLVDQLQQQEAQGKAVAEMarqeLQETQERLEAATQQNQQLRAQLSLMAH 715
Cdd:pfam01576 466 LESQLQDTQELLQEETRQK----------LNLSTRLRQLEDERNSLQEQ----LEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 716 PGEGDGLDREEEEDEEEEEEEAVAvpqpmpSIPEDLESREAmvaffnsAVASAEEEQARLRGQLKEQRV---RCRRLAHL 792
Cdd:pfam01576 532 KLEEDAGTLEALEEGKKRLQRELE------ALTQQLEEKAA-------AYDKLEKTKNRLQQELDDLLVdldHQRQLVSN 598
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 793 LASAQKEPEAAAPAPGTGGDSVCGETHRALQGAMEKlQSRFMELMQEKADLKERVEELEHRCIQLSGETDtigeyiALYQ 872
Cdd:pfam01576 599 LEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREK-ETRALSLARALEEALEAKEELERTNKQLRAEME------DLVS 671
|
730 740 750
....*....|....*....|....*....|....*.
gi 1955630604 873 SQRAVLKERHrEKEEYISRLAQDKEEMKVKLLELQE 908
Cdd:pfam01576 672 SKDDVGKNVH-ELERSKRALEQQVEEMKTQLEELED 706
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
387-646 |
2.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 387 DANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAenlkgESAMWRQRMQQMSEQ---VHTLREEkecsmsrVQELE 463
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-----ERREALQRLAEYSWDeidVASAERE-------IAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 464 TSLAELRnqmeppAGPSEVEqQLQAEAEHLRKELEGLAGQLQAQVQDNEGL-SRLNREQEERLLELERAAELWGEQAEAR 542
Cdd:COG4913 675 AELERLD------ASSDDLA-ALEEQLEELEAELEELEEELDELKGEIGRLeKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 543 RQILETM--QNDRTTISRALSQNreLKEQLAELQSGFVKLTNENMEITSALQSEQH-VKRELG---KKLGELQEKLSELK 616
Cdd:COG4913 748 RALLEERfaAALGDAVERELREN--LEERIDALRARLNRAEEELERAMRAFNREWPaETADLDadlESLPEYLALLDRLE 825
|
250 260 270
....*....|....*....|....*....|..
gi 1955630604 617 ET--VELKSQEAQSLQQQRDQYLGHLQQYVAA 646
Cdd:COG4913 826 EDglPEYEERFKELLNENSIEFVADLLSKLRR 857
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
227-653 |
2.65e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 227 EEKKECHQKQGALREQLQVHIQTIGilvSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRrrvgeLERALSAVSTQQ 306
Cdd:PLN02939 45 QQKKKRGKNIAPKQRSSNSKLQSNT---DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQR-----DEAIAAIDNEQQ 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 307 KKADRYNKELTKERDALrLELYKNTQSNE-DLKQEKSELEEKLRVLVTEKagmqlnlEELQKKLEMTELLLQQfssrcea 385
Cdd:PLN02939 117 TNSKDGEQLSDFQLEDL-VGMIQNAEKNIlLLNQARLQALEDLEKILTEK-------EALQGKINILEMRLSE------- 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 386 pdANQQLQQAMEERAQLEAhlgqvmesvrqLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETS 465
Cdd:PLN02939 182 --TDARIKLAAQEKIHVEI-----------LEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 466 LAELrnqmeppagpseveqqlqAEAEHLRKELEGLAGQLQAQVQDNEglSRLNREQEERLLELERAAELWGEQAEARRQI 545
Cdd:PLN02939 249 LIEV------------------AETEERVFKLEKERSLLDASLRELE--SKFIVAQEDVSKLSPLQYDCWWEKVENLQDL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 546 LETMQNDRTTISRALSQNRELKEQLAELQSGFvkltnenmeitsalqSEQHVKRELGKKLGELQEKLSELKETVELKSQE 625
Cdd:PLN02939 309 LDRATNQVEKAALVLDQNQDLRDKVDKLEASL---------------KEANVSKFSSYKVELLQQKLKLLEERLQASDHE 373
|
410 420
....*....|....*....|....*...
gi 1955630604 626 AQSlqqqrdqylghlqqYVAAYQQLTSE 653
Cdd:PLN02939 374 IHS--------------YIQLYQESIKE 387
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
315-720 |
2.83e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 315 ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVT--EKAGMQLNL----EELQKKLEMTELLLQQFSSRCEApdA 388
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLvqtaLRQQEKIERYQADLEELEERLEE--Q 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 389 NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQMSEQVHTLREEKECSMSR---VQELETS 465
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD----VQQTRAIQYQQAVQALERAKQLCGLPdltADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 466 LAELRNQMEPPAGPS-EVEQQLQ-AEAEHLRKE-----LEGLAGQLQAQVQDNEGLSRLNREQEERLLEleraaelwgEQ 538
Cdd:PRK04863 444 LEEFQAKEQEATEELlSLEQKLSvAQAAHSQFEqayqlVRKIAGEVSRSEAWDVARELLRRLREQRHLA---------EQ 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 539 AEARRQILETMQndrttisRALSQNRELKEQLAElqsgFVKLTNENMEITSALQSEQhvkRELGKKLGELQEKLSELKET 618
Cdd:PRK04863 515 LQQLRMRLSELE-------QRLRQQQRAERLLAE----FCKRLGKNLDDEDELEQLQ---EELEARLESLSESVSEARER 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 619 VELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlQTQLVDQLQQQeaqgkavaeMARQELQETQERLEA 698
Cdd:PRK04863 581 RMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFE-DSQDVTEYMQQ---------LLERERELTVERDEL 650
|
410 420
....*....|....*....|..
gi 1955630604 699 ATQQnQQLRAQLSLMAHPGEGD 720
Cdd:PRK04863 651 AARK-QALDEEIERLSQPGGSE 671
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
326-699 |
4.61e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 326 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQlnlEELQKKlemTELLLQQFSSRCEAPDANQQLQQAMEEraqLEAH 405
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAE---TELCAEAEEMRARLAARKQELEEILHE---LESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 406 LGQVMESVRQLQMERDKYAENLKGesamWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmeppagpsevEQQ 485
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQD----LEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQ----------NSK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 486 LQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAElwgEQAEARRQILETMQNDRTTISRALSQNRE 565
Cdd:pfam01576 150 LSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLK---KEEKGRQELEKAKRKLEGESTDLQEQIAE 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 566 LKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVEL-KSQEAQSLQQQRD---------Q 635
Cdd:pfam01576 227 LQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeRAARNKAEKQRRDlgeelealkT 306
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630604 636 YLGHLQQYVAAYQQLTS--EKEVLHnqllLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAA 699
Cdd:pfam01576 307 ELEDTLDTTAAQQELRSkrEQEVTE----LKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQA 368
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
623-869 |
4.93e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 623 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 702
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 703 NQQLRAQLSLMAhpgegdgldREEEEDEEEEEEEAVAVPQPmpsiPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQ 782
Cdd:COG4942 99 LEAQKEELAELL---------RALYRLGRQPPLALLLSPED----FLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 783 RVRCRRLAHLLASAQKEPEAAapapgtggdsvcgetHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETD 862
Cdd:COG4942 166 RAELEAERAELEALLAELEEE---------------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
....*..
gi 1955630604 863 TIGEYIA 869
Cdd:COG4942 231 RLEAEAA 237
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
475-702 |
5.29e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 475 PPAGPSEVEQQLQAEAEHLRKELEGLAGQL-QAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDR 553
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELaALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 554 TTISRALSQNRELKEQLAELQSgfVKLTNENMEITSALQSEQHVKRE--LGKKLGELQEKLSELKETVELKSQEAQSLQQ 631
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYR--LGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630604 632 QRDQYLGHLQQYVAAYQQLTSEKEvlhNQLLLQTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQ 702
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKA---ERQKLLARLEKELAELAAELAELQQ-EAEELEALIARLEAEAAA 238
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
603-711 |
5.42e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 603 KKLGELQEKLSELKETVELKSQEAQSLQQQrdqyLGHLQQYVAAYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVA 682
Cdd:PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDS----VANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQEL 125
|
90 100
....*....|....*....|....*....
gi 1955630604 683 EMARQELQETQERLEAATQQNQQLRAQLS 711
Cdd:PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLA 154
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
211-417 |
5.49e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 211 IEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQ----TIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQ 286
Cdd:COG5185 372 LSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILAtledTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELN 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 287 YSRRRVGELERalsavSTQQKKADRYNKELTKERDALrlelykntqsNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQ 366
Cdd:COG5185 452 KVMREADEESQ-----SRLEEAYDEINRSVRSKKEDL----------NEELTQIESRVSTLKATLEKLRAKLERQLEGVR 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1955630604 367 KKLEMTELLLQQFSSR--CEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQ 417
Cdd:COG5185 517 SKLDQVAESLKDFMRArgYAHILALENLIPASELIQASNAKTDGQAANLRTAV 569
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
334-517 |
6.94e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 334 NEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKlemtellLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESV 413
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 414 RQLQMERDKYAENLKGESAMWRQ-----RMQQMSEQVHTLREEKECSMSR-------VQELETSLAELRNQMEppAGPSE 481
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQ--QEAQR 313
|
170 180 190
....*....|....*....|....*....|....*.
gi 1955630604 482 VEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRL 517
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
335-710 |
7.73e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 335 EDLKQEKSELEEKLrvlvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 414
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 415 QLQMErdkyAENLKGESAMWRQRMQQMS--------EQVHTLREEkecsMSRVQELETSLAELRNQMeppagpSEVEQQL 486
Cdd:PRK04863 862 QQRSQ----LEQAKEGLSALNRLLPRLNlladetlaDRVEEIREQ----LDEAEEAKRFVQQHGNAL------AQLEPIV 927
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 487 QAeaehLRKELEGLAgQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQND--RTTISRALSQNR 564
Cdd:PRK04863 928 SV----LQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEklRQRLEQAEQERT 1002
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 565 ELKEQLAELQSGFvkltNENMEITSALQSEQHVKRELgkkLGELQEKLSELkeTVELKSQEAQSLQQQRDQylghlqqyv 644
Cdd:PRK04863 1003 RAREQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRDE--------- 1064
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630604 645 aayqqltsekevLHNQLLLQTQLVDQLQQQEAQGKAvaemarqELQETQERLEAATQQNQQLRAQL 710
Cdd:PRK04863 1065 ------------LHARLSANRSRRNQLEKQLTFCEA-------EMDNLTKKLRKLERDYHEMREQV 1111
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
302-516 |
8.89e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 302 VSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLV--------------TEKAGMQLNLEELQK 367
Cdd:PHA02562 197 IKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVmdiedpsaalnklnTAAAKIKSKIEQFQK 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 368 KLEMtelllqqFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEnlkgesamwrqRMQQMSEQVHT 447
Cdd:PHA02562 277 VIKM-------YEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE-----------IMDEFNEQSKK 338
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 448 LREEKecsmSRVQELETSLAELRNQmeppAGPSEVE-QQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSR 516
Cdd:PHA02562 339 LLELK----NKISTNKQSLITLVDK----AKKVKAAiEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
254-498 |
9.10e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 9.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 254 VSEKAELQTALAHTQHAARQkegESEDLASRLQySRRRVGELERALSAVSTQQKK--ADRYNKELTKERDALRLELYKNT 331
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQ---EKEEKAREVE-RRRKLEEAEKARQAEMDRQAAiyAEQERMAMERERELERIRQEERK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 332 QSNEDLKQEKSELE-------EKL---------RVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQA 395
Cdd:pfam17380 360 RELERIRQEEIAMEisrmrelERLqmerqqkneRVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630604 396 MEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLR-----EEKECSMSRVQELETSLAELR 470
Cdd:pfam17380 440 LEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRrkileKELEERKQAMIEEERKRKLLE 519
|
250 260
....*....|....*....|....*...
gi 1955630604 471 NQMEPPAGPSEVEQQLQAEAEHLRKELE 498
Cdd:pfam17380 520 KEMEERQKAIYEEERRREAEEERRKQQE 547
|
|
| |
