|
Name |
Accession |
Description |
Interval |
E-value |
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
1-244 |
1.63e-37 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 142.79 E-value: 1.63e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1 MKQLCLCAAASFASQDWGKSDERLLQAVENNDAPRVAALIARKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNV 80
Cdd:COG0666 34 LLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNGDLEIVKLLLEAGADV 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 81 MSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIA 160
Cdd:COG0666 114 NARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGADVNARDNDGETPLHLA 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 161 AQMCHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAAHYGALAGDKLILHLLQE 240
Cdd:COG0666 194 AENGHLEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTALLLAAAAGAALIVKLLLL 273
|
....
gi 1988312894 241 AAQR 244
Cdd:COG0666 274 ALLL 277
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
19-265 |
1.98e-35 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 137.01 E-value: 1.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 19 KSDERLLQAVENNDAPRVAALIARKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYG 98
Cdd:COG0666 19 LLLALLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 99 HPQCLKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAA 178
Cdd:COG0666 99 DLEIVKLLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGAD 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 179 ANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAAHYGALAGDKLILHLLQEAAQRPSPPSALTEDDSGE 258
Cdd:COG0666 179 VNARDNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTALLL 258
|
....*..
gi 1988312894 259 ASSQNSM 265
Cdd:COG0666 259 AAAAGAA 265
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
24-223 |
3.92e-29 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 118.52 E-value: 3.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 24 LLQAVENNDAPRVAALIArKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCL 103
Cdd:COG0666 91 LHAAARNGDLEIVKLLLE-AGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIV 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 104 KQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQD 183
Cdd:COG0666 170 KLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKD 249
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1988312894 184 LQGRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAA 223
Cdd:COG0666 250 KDGLTALLLAAAAGAALIVKLLLLALLLLAAALLDLLTLL 289
|
|
| ANKYR |
COG0666 |
Ankyrin repeat [Signal transduction mechanisms]; |
36-241 |
4.29e-26 |
|
Ankyrin repeat [Signal transduction mechanisms];
Pssm-ID: 440430 [Multi-domain] Cd Length: 289 Bit Score: 109.66 E-value: 4.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 36 VAALIARKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDV 115
Cdd:COG0666 3 LLLLLLLLLLAALLLLLLLALLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 116 VDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALMLACE 195
Cdd:COG0666 83 KDDGGNTLLHAAARNGDLEIVKLLLEAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1988312894 196 GASPETVEVLLQGGAQPGITDALGQDAAHYGALAGDKLILHLLQEA 241
Cdd:COG0666 163 NGNLEIVKLLLEAGADVNARDNDGETPLHLAAENGHLEIVKLLLEA 208
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
296-1072 |
1.16e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.06 E-value: 1.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 296 EEIVRLRQERGRLLQKIRGLEQHKER---------RQQESPEASSLHiLERQVQELQQLLVERQEEKESLGREVESLQSR 366
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQIlrerlanleRQLEELEAQLEE-LESKLDELAEELAELEEKLEELKEELESLEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 367 LSLLENERENTSYDVTTLQDE----EGELPDLPGAEVLLSRQLSpSAQEHLASLQEQVAVLTRQNQELMEKvqiLENFEK 442
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQletlRSKVAQLELQIASLNNEIE-RLEARLERLEDRRERLQQEIEELLKK---LEEAEL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 443 DETQMEVEALAEVIplalyDSLRAEFDQLRRQHAEALQALRQQETREVPREEGAAcgesevagatatkngpthmELNGsv 522
Cdd:TIGR02168 436 KELQAELEELEEEL-----EELQEELERLEEALEELREELEEAEQALDAAERELA-------------------QLQA-- 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 523 apetKVNGAETIDEEAAGDETMEARTMEAEATGAEATGAEATGAKVTEtkptgaevremettEEEANMETkptgaqatdt 602
Cdd:TIGR02168 490 ----RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE--------------GYEAAIEA---------- 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 603 ettgVEAMGVEATKTKAEEAEMQAYgvgAGQAEPPVTGTTNMEATGSRATGMESTGVSATGVENPGVEATVPGISAGPIL 682
Cdd:TIGR02168 542 ----ALGGRLQAVVVENLNAAKKAI---AFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 683 HPGAAEASEKLQVeletrIRGLEEALRQREREAAAELE-----AALGKC-----EAAEAEAGRLRERVREAEGSGASGGG 752
Cdd:TIGR02168 615 RKALSYLLGGVLV-----VDDLDNALELAKKLRPGYRIvtldgDLVRPGgvitgGSAKTNSSILERRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 753 GGDTTQLRAALEQAREDLRDRDSRLRELEAAsacLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATA 832
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKE---LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 833 RATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREasealrqsvvpasEHRRLQEEALELRGRAASLEQEV 912
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA-------------ELTLLNEEAANLRERLESLERRI 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 913 VATGKEAARLRAELERERvcsvalsehERIVGtLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQL 992
Cdd:TIGR02168 834 AATERRLEDLEEQIEELS---------EDIES-LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 993 ATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEALRDQVKDLQQQLQE 1072
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
91-183 |
3.31e-20 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 86.32 E-value: 3.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 91 LHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVLCSfKAHLNPQDrSGATPLIIAAQMCHTDLCR 170
Cdd:pfam12796 1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD-NGRTALHYAARSGHLEIVK 78
|
90
....*....|...
gi 1988312894 171 LLLQQGAAANDQD 183
Cdd:pfam12796 79 LLLEKGADINVKD 91
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
765-1102 |
1.54e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.00 E-value: 1.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 765 QAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAA 844
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 845 ELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVvpASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRA 924
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL--EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 925 ELERERVCSVALSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRT 1004
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1005 EAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEALRDQVKDLQQQLQEAARDHSSVVALY 1084
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
330
....*....|....*...
gi 1988312894 1085 RSHLLYAIQGQMDEDVQR 1102
Cdd:COG1196 537 EAALEAALAAALQNIVVE 554
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
58-150 |
4.84e-17 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 77.08 E-value: 4.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 58 FHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLLQaSCVVDVVDsSGWTALHHAAAGGCLSCSE 137
Cdd:pfam12796 1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD-NGRTALHYAARSGHLEIVK 78
|
90
....*....|...
gi 1988312894 138 VLCSFKAHLNPQD 150
Cdd:pfam12796 79 LLLEKGADINVKD 91
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
799-1091 |
1.29e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 1.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 799 EEARGLRAELAQREeaRLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREAS 878
Cdd:COG1196 213 ERYRELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 879 EALRQSVV-PASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVcsvALSEHERIVGTLQANVAQLEGQL 957
Cdd:COG1196 291 YELLAELArLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE---ELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 958 EELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEV 1037
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1038 FNLKEALKEQPAALATPEVEALR------DQVKDLQQQLQEAARDHSSVVALYRSHLLYA 1091
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEeaalleAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
809-1073 |
3.32e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 3.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 809 AQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQsvvpa 888
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA----- 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 889 sEHRRLQEealelrgRAASLEQEVVATGKEAARLRAELERERVcsvALSEHERIVGTLQANVAQLEGQLEELGRRHEKTS 968
Cdd:TIGR02168 741 -EVEQLEE-------RIAQLSKELTELEAEIEELEERLEEAEE---ELAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 969 AEVFQVQREAL-------FMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLK 1041
Cdd:TIGR02168 810 AELTLLNEEAAnlrerleSLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
250 260 270
....*....|....*....|....*....|..
gi 1988312894 1042 EALKEQPAALATpEVEALRDQVKDLQQQLQEA 1073
Cdd:TIGR02168 890 ALLRSELEELSE-ELRELESKRSELRRELEEL 920
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
730-1069 |
6.00e-15 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 79.70 E-value: 6.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 730 EAEAGRLRERVREAEGSGASGGGGGDTTQL----RAALEQAREDLRDRDSRLRELeaasacLDEARASRLLAEEEARGLR 805
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGLddadAEAVEARREELEDRDEELRDR------LEECRVAAQAHNEEAESLR 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 806 AELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSV 885
Cdd:PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 886 VPASEHRRLQEEALElrgraasleqevvatgkEAARLRAE----------LERERVCsvALSEHERIVGTLQANVAQLEG 955
Cdd:PRK02224 429 AELEATLRTARERVE-----------------EAEALLEAgkcpecgqpvEGSPHVE--TIEEDRERVEELEAELEDLEE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 956 QLEELGRRHEKTSAEVfQVQREALFMKSERHAAEAQLATAE-------QQLRGLRTEA-----------ERARQAQSRAQ 1017
Cdd:PRK02224 490 EVEEVEERLERAEDLV-EAEDRIERLEERREDLEELIAERRetieekrERAEELRERAaeleaeaeekrEAAAEAEEEAE 568
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1988312894 1018 EALDKAKEKDKKITELSKEVFNLkEALKEQPAALA--TPEVEALRDQVKDLQQQ 1069
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESL-ERIRTLLAAIAdaEDEIERLREKREALAEL 621
|
|
| PHA02875 |
PHA02875 |
ankyrin repeat protein; Provisional |
39-214 |
1.36e-13 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165206 [Multi-domain] Cd Length: 413 Bit Score: 74.26 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 39 LIARKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGS---NVMSADGAgyNALHLAAKYGHPQCLKQLLQASCVVDV 115
Cdd:PHA02875 53 LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKfadDVFYKDGM--TPLHLATILKKLDIMKLLIARGADPDI 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 116 VDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALM-LAC 194
Cdd:PHA02875 131 PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALcYAI 210
|
170 180
....*....|....*....|
gi 1988312894 195 EGASPETVEVLLQGGAQPGI 214
Cdd:PHA02875 211 ENNKIDIVRLFIKRGADCNI 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
755-1080 |
2.59e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 2.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 755 DTTQLRAALEQAREDL----RDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLA 830
Cdd:TIGR02169 668 FSRSEPAELQRLRERLeglkRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 831 taratgeqqrtaaaELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPA------SEHRRLQEEALELRGR 904
Cdd:TIGR02169 748 --------------SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiqAELSKLEEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 905 AASLEQEVVATGKEAARLRAELERERVCSVALSEHERivgTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSE 984
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK---SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 985 RHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEkdkkitelskevfNLKEALKEQPAALATPEVEALRDQVK 1064
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE-------------ELSEIEDPKGEDEEIPEEELSLEDVQ 957
|
330
....*....|....*.
gi 1988312894 1065 DLQQQLQEAARDHSSV 1080
Cdd:TIGR02169 958 AELQRVEEEIRALEPV 973
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
294-881 |
1.04e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 294 AYEEIVRLRQERGRLLQKIRGLEQHKERRQQESPEASSLHILERQVQELQQLLVERQEEKESLGREVESLQSRLSLLENE 373
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 374 RENTSYDVTTLQDEEGELPDlpgAEVLLSRQLSpSAQEHLASLQEQVAVLTRQNQELMEKVQILENFEKDETQMEVEALA 453
Cdd:COG1196 297 LARLEQDIARLEERRRELEE---RLEELEEELA-ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 454 EVIP-LALYDSLRAEFDQLRRQHAEALQALRQQETREVPREEGAACGESEVAGATATKNgpthmELNGSVAPETKVNGAE 532
Cdd:COG1196 373 ELAEaEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA-----ELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 533 TIDEEAAGDETMEARTMEAEATGAEATGAEATGAKVTETkpTGAEVREMETTEEEANMETKPTGAQATDTETTGVEAMGV 612
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL--AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 613 EATKTKAEEAEMQAYGVGAGQAEPPVTGTTNMEATGSRATGMESTGVSATgvenpgveatvpgISAGPILHPGAAEASEK 692
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT-------------FLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 693 LQVELETRIRGLEEALRQREREAAAELEAALGKCEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRD 772
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 773 RDSRLRELEAASAclDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDA 852
Cdd:COG1196 673 ALLEAEAELEELA--ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
570 580
....*....|....*....|....*....
gi 1988312894 853 AEARVAELPAACEEARQGLAELREASEAL 881
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
729-1072 |
2.50e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.71 E-value: 2.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 729 AEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRdRDSRLRELEAASACLDEARASRLLAEEEARglRAEL 808
Cdd:PTZ00121 1092 ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEAR-KAEDARKAEEARKAEDAKRVEIARKAEDAR--KAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 809 AQR-EEAR-LEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVV 886
Cdd:PTZ00121 1169 ARKaEDAKkAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEE 1248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 887 PASEHRRLQEEAlelrgRAASLEQEVVATGKEAARLRAEL----ERERVCSVALSEHERivgtlqaNVAQLEGQLEELGR 962
Cdd:PTZ00121 1249 RNNEEIRKFEEA-----RMAHFARRQAAIKAEEARKADELkkaeEKKKADEAKKAEEKK-------KADEAKKKAEEAKK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 963 RHE-KTSAEVFQVQREALFMKSE--RHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFN 1039
Cdd:PTZ00121 1317 ADEaKKKAEEAKKKADAAKKKAEeaKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
330 340 350
....*....|....*....|....*....|...
gi 1988312894 1040 LKEALKEQPAALATPEVEALRDQVKDLQQQLQE 1072
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
|
| PLN03192 |
PLN03192 |
Voltage-dependent potassium channel; Provisional |
51-210 |
3.00e-12 |
|
Voltage-dependent potassium channel; Provisional
Pssm-ID: 215625 [Multi-domain] Cd Length: 823 Bit Score: 71.05 E-value: 3.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 51 DPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAG 130
Cdd:PLN03192 522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 131 GCLSCSEVLCSFKAHLNPQdrSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLLQGGA 210
Cdd:PLN03192 602 KHHKIFRILYHFASISDPH--AAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
24-117 |
3.19e-12 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 63.60 E-value: 3.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 24 LLQAVENNDAPRVAALIaRKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSnvMSADGAGYNALHLAAKYGHPQCL 103
Cdd:pfam12796 1 LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHAD--VNLKDNGRTALHYAARSGHLEIV 77
|
90
....*....|....
gi 1988312894 104 KQLLQASCVVDVVD 117
Cdd:pfam12796 78 KLLLEKGADINVKD 91
|
|
| PHA03095 |
PHA03095 |
ankyrin-like protein; Provisional |
34-193 |
5.08e-12 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 69.67 E-value: 5.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 34 PRVAALIARKGLVPTKLDPEGKSAFHlAAMRGAASCLEV---MIAHGSNVMSADGAGYNALHLAAKYGHP--QCLKQLLQ 108
Cdd:PHA03095 132 PKVIRLLLRKGADVNALDLYGMTPLA-VLLKSRNANVELlrlLIDAGADVYAVDDRFRSLLHHHLQSFKPraRIVRELIR 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 109 ASCVVDVVDSSGWTALHHAAAGGclSCSEVLCSF----KAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDL 184
Cdd:PHA03095 211 AGCDPAATDMLGNTPLHSMATGS--SCKRSLVLPlliaGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSS 288
|
....*....
gi 1988312894 185 QGRTALMLA 193
Cdd:PHA03095 289 DGNTPLSLM 297
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
686-1099 |
7.92e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 7.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 686 AAEASEKLQVELETRIRGLEEALRQREREAAAELEAALGKCEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQ 765
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 766 AREDLRDRDSRLRELEAASACLDEARASRLLAEEEArgLRAELAQREEARLEQSRELEVLREQLAT-ARATGEQQRTAAA 844
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE--EEALLELLAELLEEAALLEAALAELLEElAEAAARLLLLLEA 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 845 ELGRARDAAEARVAELPAACEEARQGLAELREASEALRQsVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRA 924
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA-ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 925 ELERERVCSVALSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREAL----FMKSERHAAEAQLATAEQQLR 1000
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEaalrRAVTLAGRLREVTLEGEGGSA 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1001 GLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEALRDQVKDLQQQLQEAARDHSSV 1080
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
410
....*....|....*....
gi 1988312894 1081 VALYRSHLLYAIQGQMDED 1099
Cdd:COG1196 739 EELLEEEELLEEEALEELP 757
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
337-930 |
1.15e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 337 RQVQELQQLLVERQEEKESLGREVESLQSRLSLLENERENTSYDVTTLQDEEGELpdlpGAEVLLSRQLSPSAQEHLASL 416
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 417 QEQVAVLTRQNQELMEKVQILENFEKDETQMEVEALAEViplalyDSLRAEFDQLRRQHAEALQALRQQETREVPREEGA 496
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEEL------EEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 497 ACGESEVAGATATkngpthmelngsvapETKVNGAETIDEEAAGDETMEARTMEAEATGAEATGAEATGAKVTETKPTGA 576
Cdd:COG1196 382 EELAEELLEALRA---------------AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 577 EVREMETTEEEANMETKP---TGAQATDTETTGVEAMGVEATKTKAEEAEMQAYGVGAGQAEppvtgttnmeATGSRATG 653
Cdd:COG1196 447 AAEEEAELEEEEEALLELlaeLLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE----------GVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 654 MESTGVSATGVENPGVEATVPgisagPILHPGAAEASEKLQVELETRIRGLEEALRQREREAAAELEAalgkceAAEAEA 733
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYE-----AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL------DKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 734 GRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREE 813
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 814 ARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAElpaaceEARQGLAELREASEALRQSVVPASEHRR 893
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE------AEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580 590
....*....|....*....|....*....|....*..
gi 1988312894 894 LQEEALELRGRAASLEQEVVATGKEAARLRAELERER 930
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
762-995 |
4.30e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 67.63 E-value: 4.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 762 ALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQsrELEVLREQLATARAtgeqqrt 841
Cdd:COG4913 239 RAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEA--ELEELRAELARLEA------- 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 842 AAAELGRARDAAEARVAELPAACEEA-RQGLAELREASEALRQsvvpasEHRRLQEEALELRGRAASLEQEVVATGKEAA 920
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLER------ELEERERRRARLEALLAALGLPLPASAEEFA 383
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1988312894 921 RLRAELERervcsvALSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATA 995
Cdd:COG4913 384 ALRAEAAA------LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
727-1073 |
4.42e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 4.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 727 EAAEAEAGRLRERVREAEgsgasgggggdttQLRAALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRA 806
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAE-------------ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 807 ELAQREEAR-LEQSRELEVLREQLATAR--ATGEQQRTAAAELGRA---RDAAEARVAELPAACEEARQGLAELREASEA 880
Cdd:PTZ00121 1241 EAKKAEEERnNEEIRKFEEARMAHFARRqaAIKAEEARKADELKKAeekKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 881 LRQS---------VVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSV-ALSEHERIVGTLQANV 950
Cdd:PTZ00121 1321 KKKAeeakkkadaAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAkKKAEEKKKADEAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 951 AQLEGQLEELGRRHE--------KTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRG--LRTEAERARQAQS------ 1014
Cdd:PTZ00121 1401 EEDKKKADELKKAAAakkkadeaKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAeeAKKKAEEAKKADEakkkae 1480
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1988312894 1015 ---RAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEALRDQVKDLQQQLQEA 1073
Cdd:PTZ00121 1481 eakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
685-1065 |
4.72e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 4.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 685 GAAEASEKLQVELETRIRGLEEALRQREREAAAEleaalgkcEAAEAEAGRLRERVREAEGSGASGGGggdttqlRAALE 764
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE--------EARKAEDARKAEEARKAEDAKRVEIA-------RKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 765 QAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARglRAELAQR--EEARLEQSRELEVLREQLATARAtgEQQRta 842
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR--KAEAARKaeEERKAEEARKAEDAKKAEAVKKA--EEAK-- 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 843 aaelgraRDAAEARVAELPAACEEARQgLAELREASEALRQSVVPASEHRRLQE--EALELRGRAASLEQEVVATGKEAA 920
Cdd:PTZ00121 1237 -------KDAEEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKAEEARKADElkKAEEKKKADEAKKAEEKKKADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 921 RlRAELERERvcsvalSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLR 1000
Cdd:PTZ00121 1309 K-KAEEAKKA------DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1988312894 1001 GLRTEAERARqaqsRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEALRDQVKD 1065
Cdd:PTZ00121 1382 AAKKKAEEKK----KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
806-1116 |
8.17e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 8.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 806 AELAQREEARLEQSRELE--VLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALrq 883
Cdd:TIGR02168 209 AEKAERYKELKAELRELElaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL-- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 884 svvpasehrrlQEEALELRGRAASLEQEVVATGKEAARLRAELERervCSVALSEHERIVGTLQANVAQLEGQLEELGRR 963
Cdd:TIGR02168 287 -----------QKELYALANEISRLEQQKQILRERLANLERQLEE---LEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 964 HEKTSAEVfqvqrealfmkserHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEK----DKKITELSKEVFN 1039
Cdd:TIGR02168 353 LESLEAEL--------------EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEierlEARLERLEDRRER 418
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1988312894 1040 LKEALKEQPAALATPEVEALRDQVKDLQQQLQEAARDHSSVVAlyrshLLYAIQGQMDEDVQRILSQILQMQRLQAQ 1116
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE-----ALEELREELEEAEQALDAAERELAQLQAR 490
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
473-1081 |
1.39e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 473 RQHAEALQALRQQETREVPREEGAACGESEVAGATATKNGPTHMELNGSVAPETKVNGAETIDEEAAGDEtmEARTMEAE 552
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD--ELKKAEEK 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 553 ATGAEATGAEATgAKVTETKPTGAEVREMETTEEEANMETKPTGAQATDTETTGVEAmgvEATKTKAEEAEMQAygvgAG 632
Cdd:PTZ00121 1290 KKADEAKKAEEK-KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA---EAAKAEAEAAADEA----EA 1361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 633 QAEPPVTGTTNMEATGSRATGMESTGVSATGVENPGVEATVPGISAGPIlhpGAAEASEKLQVELETR---IRGLEEALR 709
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL---KKAAAAKKKADEAKKKaeeKKKADEAKK 1438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 710 QREREAAAELEAALGKCEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAR---EDLRDRDSRLRELEAASAC 786
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKkkaDEAKKAAEAKKKADEAKKA 1518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 787 LDEARASRLLAEEEARGLRaELAQREEAR-LEQSRELEVLRE-----QLATARATGEQQRTAAAELGRARDAAEARVAEL 860
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKAD-EAKKAEEKKkADELKKAEELKKaeekkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 861 PAACEEARQGLAE-LREASEALrqsvVPASEHRRLQEEALELRGRAASLEQEVvatgKEAARLRAELERERVCSVAL--- 936
Cdd:PTZ00121 1598 MKLYEEEKKMKAEeAKKAEEAK----IKAEELKKAEEEKKKVEQLKKKEAEEK----KKAEELKKAEEENKIKAAEEakk 1669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 937 SEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREAlfmKSERHAAEaQLATAEQQLRGLRTEAERARQAQSRA 1016
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKE---AEEKKKAE-ELKKAEEENKIKAEEAKKEAEEDKKK 1745
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1988312894 1017 QEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEALRDQVKDLQQQLQEAARDHSSVV 1081
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANI 1810
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
302-1073 |
1.42e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 302 RQERGRLLQKIRGLEQHKERRQQESPEASSLHILERQVQELQQLLVERQEEKESLGREVESLQSRLSLLENERENtsydv 381
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN----- 1251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 382 ttlqdEEGELPDLPGAEVLLSRQLSPSAQEhlaslqeqvavlTRQNQEL--MEKVQILENFEKDETQMEVEAL---AEVI 456
Cdd:PTZ00121 1252 -----EEIRKFEEARMAHFARRQAAIKAEE------------ARKADELkkAEEKKKADEAKKAEEKKKADEAkkkAEEA 1314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 457 PLAlyDSLRAEFDQLRRQhAEALQalRQQETREVPREEGAACGESEVAGATATKNGPTHMELNGSVApETKVNGAETIDE 536
Cdd:PTZ00121 1315 KKA--DEAKKKAEEAKKK-ADAAK--KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA-KKKADAAKKKAE 1388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 537 EAAGDETMEARTMEAEATGAEATGAEATGAKVTETKPTGAEVREMETTEEEANMETKptgaqATDTETTGVEAMGVEATK 616
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK-----ADEAKKKAEEAKKAEEAK 1463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 617 TKAEEAEmqaygvgagQAEppvtgttNMEATGSRATGMESTGVSATGVENPGVEATvpgisagpilhpGAAEASEKLQve 696
Cdd:PTZ00121 1464 KKAEEAK---------KAD-------EAKKKAEEAKKADEAKKKAEEAKKKADEAK------------KAAEAKKKAD-- 1513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 697 letRIRGLEEALRQREREAAAeleaalgkcEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAalEQAREDLRDRDSR 776
Cdd:PTZ00121 1514 ---EAKKAEEAKKADEAKKAE---------EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA--EEAKKAEEDKNMA 1579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 777 LRELEAASAcLDEARASRL--LAEEEARGLRAELAQREEARL--EQSRELEVLREQLATARATGEQQRTAAAELGRARDA 852
Cdd:PTZ00121 1580 LRKAEEAKK-AEEARIEEVmkLYEEEKKMKAEEAKKAEEAKIkaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 853 AEARVAELPAACEEARQGLAELREASEALRQSvvpASEHRRLQEEALELRGRAASLEQEVvatgKEAARLRAELERERVc 932
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA---AEALKKEAEEAKKAEELKKKEAEEK----KKAEELKKAEEENKI- 1730
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 933 svalseherivgtlqaNVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLR-GLRTEAERARQ 1011
Cdd:PTZ00121 1731 ----------------KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEeELDEEDEKRRM 1794
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1988312894 1012 aqsraqealdkakEKDKKITELSKEVFNLKEALKEQPAALATP---EVEALRDQVKDLQQQLQEA 1073
Cdd:PTZ00121 1795 -------------EVDKKIKDIFDNFANIIEGGKEGNLVINDSkemEDSAIKEVADSKNMQLEEA 1846
|
|
| Ank_2 |
pfam12796 |
Ankyrin repeats (3 copies); |
157-238 |
2.01e-10 |
|
Ankyrin repeats (3 copies);
Pssm-ID: 463710 [Multi-domain] Cd Length: 91 Bit Score: 58.20 E-value: 2.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 157 LIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDalGQDAAHYGALAGDKLILH 236
Cdd:pfam12796 1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN--GRTALHYAARSGHLEIVK 78
|
..
gi 1988312894 237 LL 238
Cdd:pfam12796 79 LL 80
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
694-1116 |
2.01e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.85 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 694 QVELETRIRGLEEALRQREREAaaeleaalGKCEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRDR 773
Cdd:COG4913 250 QIELLEPIRELAERYAAARERL--------AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 774 DSRLRELEAASACLDEARASRLlaEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAE----LGRA 849
Cdd:COG4913 322 REELDELEAQIRGNGGDRLEQL--EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAlleaLEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 850 RDAAEARVAELPAACEEARQGLAELREASEAL--RQSVVPASEHRRLQ-----------------------------EEA 898
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLerRKSNIPARLLALRDalaealgldeaelpfvgelievrpeeerwRGA 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 899 LE--LRGRAASLeqeVVATGKEAA------------RLRAELERERVCSVALS--EHERIVGTLQ--------------- 947
Cdd:COG4913 480 IErvLGGFALTL---LVPPEHYAAalrwvnrlhlrgRLVYERVRTGLPDPERPrlDPDSLAGKLDfkphpfrawleaelg 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 948 --------ANVAQL---------EGQLEELGRRHEK------TSAEVF----QVQREALfmKSERHAAEAQLATAEQQLR 1000
Cdd:COG4913 557 rrfdyvcvDSPEELrrhpraitrAGQVKGNGTRHEKddrrriRSRYVLgfdnRAKLAAL--EAELAELEEELAEAEERLE 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1001 GLRTEaERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEqpAALATPEVEALRDQVKDLQQQLQEAARdhssv 1080
Cdd:COG4913 635 ALEAE-LDALQERREALQRLAEYSWDEIDVASAEREIAELEAELER--LDASSDDLAALEEQLEELEAELEELEE----- 706
|
490 500 510
....*....|....*....|....*....|....*.
gi 1988312894 1081 valyRSHLLYAIQGQMDEDVQRILSQILQMQRLQAQ 1116
Cdd:COG4913 707 ----ELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
|
| PLN03192 |
PLN03192 |
Voltage-dependent potassium channel; Provisional |
42-207 |
2.01e-09 |
|
Voltage-dependent potassium channel; Provisional
Pssm-ID: 215625 [Multi-domain] Cd Length: 823 Bit Score: 61.81 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 42 RKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDvvDSSGW 121
Cdd:PLN03192 546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAG 623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 122 TALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDLQgrtalmlacEGASPET 201
Cdd:PLN03192 624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD---------DDFSPTE 694
|
....*.
gi 1988312894 202 VEVLLQ 207
Cdd:PLN03192 695 LRELLQ 700
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
797-1053 |
6.99e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 6.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 797 AEEEARGLRAELAQREEARleqsRELEVLREQ---LATARATGEQQRTAAAELGRARDAAEARVAElpaaceEARQGLAE 873
Cdd:COG4913 223 TFEAADALVEHFDDLERAH----EALEDAREQielLEPIRELAERYAAARERLAELEYLRAALRLW------FAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 874 LREASEALRQsvvpasEHRRLQEEALELRGRAASLEQEVVATgkEAARLRAELERERVCSVALSEHERIVGTLQANVAQL 953
Cdd:COG4913 293 LEAELEELRA------ELARLEAELERLEARLDALREELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 954 EGQLEELGRRHEkTSAEVFQVQREalfmkserhAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDkakEKDKKITEL 1033
Cdd:COG4913 365 EALLAALGLPLP-ASAEEFAALRA---------EAAALLEALEEELEALEEALAEAEAALRDLRRELR---ELEAEIASL 431
|
250 260
....*....|....*....|
gi 1988312894 1034 SKEVFNLKEALKEQPAALAT 1053
Cdd:COG4913 432 ERRKSNIPARLLALRDALAE 451
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
51-221 |
1.15e-08 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 58.82 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 51 DPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAG 130
Cdd:PHA02874 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 131 GCLSCSEVLCSFKAHLNPQDRSGATPLIIAaqMCHTDLCRLLLQQGAAANDQDLQGRTALMLACE-GASPETVEVLLQGG 209
Cdd:PHA02874 201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNA--IIHNRSAIELLINNASINDQDIDGSTPLHHAINpPCDIDIIDILLYHK 278
|
170
....*....|..
gi 1988312894 210 AQPGITDALGQD 221
Cdd:PHA02874 279 ADISIKDNKGEN 290
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
871-1076 |
1.50e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 871 LAELREASEALRQSVVPASEHRRLQEEALELRGRAASLEQEvvatgkeaaRLRAELERERVcsvALSEHERIVGTLQANV 950
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLE---------ELREELEELQE---ELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 951 AQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERA----RQAQSRAQEALDKAKEK 1026
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqlEELESKLDELAEELAEL 342
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1027 DKKITELSKEVFNLKEALKEQPAalatpEVEALRDQVKDLQQQLQEAARD 1076
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEA-----ELEELESRLEELEEQLETLRSK 387
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
797-1079 |
2.27e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 797 AEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEqqrtaaaelgrARDAAEARVAELPAACEEARQgLAELRE 876
Cdd:PTZ00121 1092 ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE-----------ARKAEDARKAEEARKAEDAKR-VEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 877 ASEALRQSVVPASEHRRLQEE---ALELRgRAASLEQEVVATGKEAARlRAELEReRVCSVALSEHERIVGTL------- 946
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAarkAEEVR-KAEELRKAEDARKAEAAR-KAEEER-KAEEARKAEDAKKAEAVkkaeeak 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 947 ----QANVAQLEGQLEELgRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRT--EAERARQAQSRAQEAl 1020
Cdd:PTZ00121 1237 kdaeEAKKAEEERNNEEI-RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaeEKKKADEAKKKAEEA- 1314
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1988312894 1021 DKAKEKDKKITELSKEVFNLKEALKE--QPAALATPEVEALRDQVKDLQQQlQEAARDHSS 1079
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEakKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKE 1374
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
687-1069 |
2.85e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 687 AEASEKLQVELETRIRGLEEALRQREREAaaeleaalgkcEAAEAEAGRLRERVREAEGSGASGGGGGDTtqLRAALEQA 766
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAA-----------QAHNEEAESLREDADDLEERAEELREEAAE--LESELEEA 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 767 REDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQ-------- 838
Cdd:PRK02224 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcp 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 839 ---QRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQEEALEL-------RGRAASL 908
Cdd:PRK02224 456 ecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLeeliaerRETIEEK 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 909 EQEVVATGKEAARLRAELERERvcSVALSEHERIVGTLQAnVAQLEGQLEELGRRhektsaevfqvqREALFMKSERHAA 988
Cdd:PRK02224 536 RERAEELRERAAELEAEAEEKR--EAAAEAEEEAEEAREE-VAELNSKLAELKER------------IESLERIRTLLAA 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 989 EAQLATAEQQLRglrteaERARQAQSRAQEALDKAKEKDKKITELSKEV--FNLKEALK-----EQPAALATPEVEALRD 1061
Cdd:PRK02224 601 IADAEDEIERLR------EKREALAELNDERRERLAEKRERKRELEAEFdeARIEEAREdkeraEEYLEQVEEKLDELRE 674
|
....*...
gi 1988312894 1062 QVKDLQQQ 1069
Cdd:PRK02224 675 ERDDLQAE 682
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
706-1075 |
2.93e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 58.43 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 706 EALRQREREAAAELeaalgkcEAAEAEAGRLRERVReaegsgasgggggdttqLRAALEQAREDLRDRDSRLRE----LE 781
Cdd:COG3096 316 EELSARESDLEQDY-------QAASDHLNLVQTALR-----------------QQEKIERYQEDLEELTERLEEqeevVE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 782 AASACLDEARASRLLAEEEARGLRAELAQREEA-RLEQSRELEVLREQLATARAtgeQQRTAAAELgrARDAAEARVAEL 860
Cdd:COG3096 372 EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAlDVQQTRAIQYQQAVQALEKA---RALCGLPDL--TPENAEDYLAAF 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 861 PAACEEARQGLAElreaseaLRQSVVPASEHRRLQEEALEL---------RGRAASLEQEVVatgKEAARLRAELERERV 931
Cdd:COG3096 447 RAKEQQATEEVLE-------LEQKLSVADAARRQFEKAYELvckiageveRSQAWQTARELL---RRYRSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 932 CSVALSEHERivgtLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAE--RA 1009
Cdd:COG3096 517 LRAQLAELEQ----RLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEqlRA 592
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1988312894 1010 RQAQSRAQE-ALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEA--LRDQVKDLQQQLQEAAR 1075
Cdd:COG3096 593 RIKELAARApAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREAtvERDELAARKQALESQIE 661
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
770-1112 |
3.03e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 58.43 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 770 LRDRDSRLRELEAASAC---LDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLA---TARATGEQQRTAA 843
Cdd:PRK04863 275 MRHANERRVHLEEALELrreLYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvqTALRQQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 844 AELgrarDAAEARVAELPAACEEARQGLAELREASEALRQSV-------------VPASEHRRLQ--------EEALELR 902
Cdd:PRK04863 355 ADL----EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVdelksqladyqqaLDVQQTRAIQyqqavqalERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 903 GRAA-------SLEQEVVATGKEAARLRAELERE-RVCSVALSEHE-------RIVGTLQANVAQLEGQleELGRRHEKT 967
Cdd:PRK04863 431 GLPDltadnaeDWLEEFQAKEQEATEELLSLEQKlSVAQAAHSQFEqayqlvrKIAGEVSRSEAWDVAR--ELLRRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 968 SAEVFQVQrealfmkserhAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQ 1047
Cdd:PRK04863 509 RHLAEQLQ-----------QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEA 577
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1988312894 1048 PAalatpEVEALRDQVKDLQQQLQEAARD----HSSVVALYRshlLYAIQGQMDEDVQRILSQILQMQR 1112
Cdd:PRK04863 578 RE-----RRMALRQQLEQLQARIQRLAARapawLAAQDALAR---LREQSGEEFEDSQDVTEYMQQLLE 638
|
|
| PHA03100 |
PHA03100 |
ankyrin repeat protein; Provisional |
70-238 |
3.35e-08 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 57.37 E-value: 3.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 70 LEVMIAHGSNVMSADGAGYNALHLAA--KYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAGGC--LSCSEVLCSFKAH 145
Cdd:PHA03100 89 VKLLLEYGANVNAPDNNGITPLLYAIskKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKidLKILKLLIDKGVD 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 146 LNPQDRsgatpliiaaqmchtdlCRLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAAHY 225
Cdd:PHA03100 169 INAKNR-----------------VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI 231
|
170
....*....|...
gi 1988312894 226 GALAGDKLILHLL 238
Cdd:PHA03100 232 AILNNNKEIFKLL 244
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
73-127 |
3.97e-08 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 50.81 E-value: 3.97e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1988312894 73 MIAHGS-NVMSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHA 127
Cdd:pfam13857 1 LLEHGPiDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
759-1074 |
4.22e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 759 LRAALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEeARGLRAELAQREEARLEQ-SRELEVLREQLATARAtge 837
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQ-LKELEEKLKKYNLEELEKkAEEYEKLKEKLIKLKG--- 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 838 QQRTAAAELGRARDAaEARVAELPAACEEARQGLAELreasealrqsvvpaseHRRLQEEAL----ELRGRAASLE---Q 910
Cdd:PRK03918 540 EIKSLKKELEKLEEL-KKKLAELEKKLDELEEELAEL----------------LKELEELGFesveELEERLKELEpfyN 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 911 EVVATGKEAARLRAELERERVCSVALSEHERIVGTLQANVAQLEGQLEELGRRHektSAEVFQVQREALFMKSERHAaea 990
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY---SEEEYEELREEYLELSRELA--- 676
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 991 qlataeqqlrGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALkeqpaalatPEVEALRDQVKDLQQQL 1070
Cdd:PRK03918 677 ----------GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL---------ERVEELREKVKKYKALL 737
|
....
gi 1988312894 1071 QEAA 1074
Cdd:PRK03918 738 KERA 741
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
87-139 |
5.01e-08 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 50.35 E-value: 5.01e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 87 GYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVL 139
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLL 53
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
689-930 |
1.01e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 689 ASEKLQvELETRIRGLEEALRQREREAaaeleaalgkcEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQARE 768
Cdd:COG4913 608 NRAKLA-ALEAELAELEEELAEAEERL-----------EALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 769 DLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGR 848
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 849 ARDAAEARVAELPAACEEARQGL-AELREASEALRQ----------------SVVPAS------EHRRLQEEAL-ELRGR 904
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALrARLNRAEEELERamrafnrewpaetadlDADLESlpeylaLLDRLEEDGLpEYEER 835
|
250 260
....*....|....*....|....*.
gi 1988312894 905 AASLEQEvvATGKEAARLRAELERER 930
Cdd:COG4913 836 FKELLNE--NSIEFVADLLSKLRRAI 859
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
155-206 |
1.16e-07 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 49.20 E-value: 1.16e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1988312894 155 TPLIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLL 206
Cdd:pfam13637 3 TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
291-1037 |
1.19e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.39 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 291 DRDAYEEIVRLRQErgrllqkIRGLEQHKERRQQESPEASSLHI----LERQVQELQQLLVERQEEKESLGRE------- 359
Cdd:pfam12128 229 DIQAIAGIMKIRPE-------FTKLQQEFNTLESAELRLSHLHFgyksDETLIASRQEERQETSAELNQLLRTlddqwke 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 360 -VESLQSRLSLLENERENTSYDVTTLQDEEGELPDLPGAEVLLSRQLSPSAQEHLASLQEQVAVLTRQNQELMEKVQILE 438
Cdd:pfam12128 302 kRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRR 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 439 NFEKDETQMEVEALaeviplalYDSLRAEFDQLRRQHAEALQALRQQETREVPREEGAACGESEVAGATATKNGPTHMEL 518
Cdd:pfam12128 382 SKIKEQNNRDIAGI--------KDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 519 NGSVA-PETKVNGAETIDEEAAGDETMEARTMEAEATGAEATGAEATGAKVTEtKPTGAEVREMETTEEEANMETKPTGA 597
Cdd:pfam12128 454 NQATAtPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASE-ALRQASRRLEERQSALDELELQLFPQ 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 598 QATDTETTGVEAMGVEATKTKAEEAEMqaygVGAGQAEPPVTGttnmeatgsratgmestgvsatgvENPGVEATVPGIS 677
Cdd:pfam12128 533 AGTLLHFLRKEAPDWEQSIGKVISPEL----LHRTDLDPEVWD------------------------GSVGGELNLYGVK 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 678 agpiLHPGAAEASEKLQveletrirgLEEALRQREREAAAELEAALGKCEAAEAEAGRLRERVREAEGSGasgggggdtT 757
Cdd:pfam12128 585 ----LDLKRIDVPEWAA---------SEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREE---------T 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 758 QLRAALEQAREDLRDRDSRLRELEAAsacLDEARASRL-LAEEEARGLRAELAQREearLEQSRELEVLREQLATARATG 836
Cdd:pfam12128 643 FARTALKNARLDLRRLFDEKQSEKDK---KNKALAERKdSANERLNSLEAQLKQLD---KKHQAWLEEQKEQKREARTEK 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 837 EQQRTAAAElgrARDAAEARVAELPAACEEARqglaelreasealrqsvvpASEHRRLQEE-ALELRGRAASlEQEVVAT 915
Cdd:pfam12128 717 QAYWQVVEG---ALDAQLALLKAAIAARRSGA-------------------KAELKALETWyKRDLASLGVD-PDVIAKL 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 916 GKEAARLRAELERERVCSVALSEHERIVGT--------LQANVAQLEGQLEELGRRHEKTSAEVfQVQREALFMksERHA 987
Cdd:pfam12128 774 KREIRTLERKIERIAVRRQEVLRYFDWYQEtwlqrrprLATQLSNIERAISELQQQLARLIADT-KLRRAKLEM--ERKA 850
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1988312894 988 AEAQLATAEQQLRGLRTEAER---------ARQAQSRAQEALDKAKEKDKKITELSKEV 1037
Cdd:pfam12128 851 SEKQQVRLSENLRGLRCEMSKlatlkedanSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
120-173 |
1.79e-07 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 48.81 E-value: 1.79e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1988312894 120 GWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLL 173
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
|
|
| PHA03100 |
PHA03100 |
ankyrin repeat protein; Provisional |
31-181 |
2.94e-07 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222984 [Multi-domain] Cd Length: 422 Bit Score: 54.29 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 31 NDAPRVAALIARKGLVPTKLDPEGKSAFHLAAMR--GAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQC------ 102
Cdd:PHA03100 83 TDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKksNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLkilkll 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 103 ------------LKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCR 170
Cdd:PHA03100 163 idkgvdinaknrVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFK 242
|
170
....*....|.
gi 1988312894 171 LLLQQGAAAND 181
Cdd:PHA03100 243 LLLNNGPSIKT 253
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
686-1080 |
4.71e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 686 AAEASEKLQVELETRIRGLE---EALRQREREAAAELEAALGKCEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLR-- 760
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKel 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 761 ----AALEQAREDLRDRDSRLRE-LEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLAtarat 835
Cdd:TIGR02168 439 qaelEELEEELEELQEELERLEEaLEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK----- 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 836 geQQRTAAAELGRARDAAEARV---AELPAACEEARQ-----GLAELREASEALRQS--------VVPASEHRRLQEEAL 899
Cdd:TIGR02168 514 --NQSGLSGILGVLSELISVDEgyeAAIEAALGGRLQavvveNLNAAKKAIAFLKQNelgrvtflPLDSIKGTEIQGNDR 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 900 ELR-------GRAASLEQE----------------VVATGKEAARLRAELERE------------RVCSVALSEHERIVG 944
Cdd:TIGR02168 592 EILkniegflGVAKDLVKFdpklrkalsyllggvlVVDDLDNALELAKKLRPGyrivtldgdlvrPGGVITGGSAKTNSS 671
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 945 TL--QANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDK 1022
Cdd:TIGR02168 672 ILerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1988312894 1023 A----KEKDKKITELSKEVFNLKEALKEQPAalatpEVEALRDQVKDLQQQLQEAARDHSSV 1080
Cdd:TIGR02168 752 LskelTELEAEIEELEERLEEAEEELAEAEA-----EIEELEAQIEQLKEELKALREALDEL 808
|
|
| PHA03095 |
PHA03095 |
ankyrin-like protein; Provisional |
29-225 |
7.49e-07 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 53.10 E-value: 7.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 29 ENNDAPRVAALIARKGLVPTKlDPEGKSAFHLAAMRGAASCLEV---MIAHGSNVMSADGAGYNALHLaakyghpqclkq 105
Cdd:PHA03095 23 SNVTVEEVRRLLAAGADVNFR-GEYGKTPLHLYLHYSSEKVKDIvrlLLEAGADVNAPERCGFTPLHL------------ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 106 LLQASCVVDVVDssgwtalhhaaaggclscseVLCSFKAHLNPQDRSGATPL-IIAAQMC-HTDLCRLLLQQGAAANDQD 183
Cdd:PHA03095 90 YLYNATTLDVIK--------------------LLIKAGADVNAKDKVGRTPLhVYLSGFNiNPKVIRLLLRKGADVNALD 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1988312894 184 LQGRTAL--MLACEGASPETVEVLLQGGAQPGITDALGQDAAHY 225
Cdd:PHA03095 150 LYGMTPLavLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHH 193
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
772-978 |
3.78e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 772 DRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARD 851
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 852 AAEARVAE-LPAACEEARQGLAEL----REASEALRQSVVPASEHRRLQEEALELRGRAASLE---QEVVATGKEAARLR 923
Cdd:COG4942 101 AQKEELAElLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalrAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1988312894 924 AELERERV-CSVALSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREA 978
Cdd:COG4942 181 AELEEERAaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
762-1075 |
3.92e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 3.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 762 ALEQAREDLRDRDSRLRELEAASA----CLDEARASRLLAEEEARGLRAELAQREEA-RLEQSRELEVLREQLATARAtg 836
Cdd:PRK04863 349 KIERYQADLEELEERLEEQNEVVEeadeQQEENEARAEAAEEEVDELKSQLADYQQAlDVQQTRAIQYQQAVQALERA-- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 837 eQQRTAAAELgrARDAAEARVAELPAACEEARQglaELREASEALRQsvvpASEHRRLQEEALELrgraasleqevvatg 916
Cdd:PRK04863 427 -KQLCGLPDL--TADNAEDWLEEFQAKEQEATE---ELLSLEQKLSV----AQAAHSQFEQAYQL--------------- 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 917 keAARLRAELERERVCSVA---LSEHERIVgTLQANVAQLEGQLEELGRRHEKtSAEVFQVQREALfMKSERH-----AA 988
Cdd:PRK04863 482 --VRKIAGEVSRSEAWDVArelLRRLREQR-HLAEQLQQLRMRLSELEQRLRQ-QQRAERLLAEFC-KRLGKNlddedEL 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 989 EAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEA---LKEQ-PAALATPEvealrdQVK 1064
Cdd:PRK04863 557 EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDAlarLREQsGEEFEDSQ------DVT 630
|
330
....*....|.
gi 1988312894 1065 DLQQQLQEAAR 1075
Cdd:PRK04863 631 EYMQQLLERER 641
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
837-1073 |
4.68e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 837 EQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASealrQSVVPASEHRRLQEEALELRGRAASLEQEVVATG 916
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKN----GLVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 917 KEAARLRAELERERVCSVALSEHERIvGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREalfmkseRHAAEAQLATAE 996
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQSPVI-QQLRAQLAELEAELAELSARYTPNHPDVIALRAQ-------IAALRAQLQQEA 311
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312894 997 QQ-LRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEalkeqpaalatpEVEALRDQVKDLQQQLQEA 1073
Cdd:COG3206 312 QRiLASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLER------------EVEVARELYESLLQRLEEA 377
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
761-1077 |
6.20e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 6.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 761 AALEQAREDLRDRDSRLRELEAASACLDEARAsRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQR 840
Cdd:COG4717 88 EEYAELQEELEELEEELEELEAELEELREELE-KLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 841 TAAAELGRAR-------------------------DAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQ 895
Cdd:COG4717 167 ELEAELAELQeeleelleqlslateeelqdlaeelEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 896 EEALELRGRAASLEQEVVATGKEAARLR--------------AELERERVCSVALSEHERIVGTLQANVAQLEGQLEELG 961
Cdd:COG4717 247 EARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLA 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 962 RRHEKTSAEVFQVqREALFMKSERHAAEAQLATAEQQLRGLRTEAERAR---QAQSRAQEALDKAKEKDKKITELSKEVF 1038
Cdd:COG4717 327 ALGLPPDLSPEEL-LELLDRIEELQELLREAEELEEELQLEELEQEIAAllaEAGVEDEEELRAALEQAEEYQELKEELE 405
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1988312894 1039 NLKEALKEQP----AALATPEVEALRDQVKDLQQQLQEAARDH 1077
Cdd:COG4717 406 ELEEQLEELLgeleELLEALDEEELEEELEELEEELEELEEEL 448
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
39-160 |
6.45e-06 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 49.96 E-value: 6.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 39 LIARKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGhpQCLKQLLQASCVVDVVDS 118
Cdd:PHA02874 175 LLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN--RSAIELLINNASINDQDI 252
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1988312894 119 SGWTALHHAAAGGC-LSCSEVLCSFKAHLNPQDRSGATPLIIA 160
Cdd:PHA02874 253 DGSTPLHHAINPPCdIDIIDILLYHKADISIKDNKGENPIDTA 295
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
56-107 |
7.91e-06 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 44.19 E-value: 7.91e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1988312894 56 SAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLL 107
Cdd:pfam13637 3 TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
292-490 |
1.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 292 RDAYEEIVRLRQERGRLLQKIRGLEQHKERRQQESPEASSLHILERQVQELQQLLVERQEEKESLGREVESLQSRLSLLE 371
Cdd:COG4913 647 REALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 372 NERENTSYDVTTLQDEEGELPDLPGAEVLLSRQLSPSAQEHLASLQEQVAVLTRQNQELMEK-VQILENF------EKDE 444
Cdd:COG4913 727 EELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEElERAMRAFnrewpaETAD 806
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1988312894 445 TQMEVEALAEVipLALYDSLRAefDQLRRQHAEALQALRQQETREV 490
Cdd:COG4913 807 LDADLESLPEY--LALLDRLEE--DGLPEYEERFKELLNENSIEFV 848
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
103-209 |
1.30e-05 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 49.19 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 103 LKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQ 182
Cdd:PHA02874 107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK 186
|
90 100
....*....|....*....|....*..
gi 1988312894 183 DLQGRTALMLACEGASPETVEVLLQGG 209
Cdd:PHA02874 187 DNNGESPLHNAAEYGDYACIKLLIDHG 213
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
759-1072 |
1.51e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 759 LRAALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQlataratgeq 838
Cdd:PRK03918 212 ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK---------- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 839 qrtaAAELGRARDAAEARVaELPAACEEARQGLAELREASEALRQSvvpASEHRRLQEEALELRGRAASLEQEVVATGKE 918
Cdd:PRK03918 282 ----VKELKELKEKAEEYI-KLSEFYEEYLDELREIEKRLSRLEEE---INGIEERIKELEEKEERLEELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 919 AARLRA---ELERERVCSVALSEHERIVGTLqaNVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERhaaeAQLATA 995
Cdd:PRK03918 354 LEELEErheLYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI----KELKKA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 996 EQQLRGLR----------TEAERARQAQSRAQEALDKAKEK---DKKITELSKEVFNLKEALKEQPAALAtpeVEALRDQ 1062
Cdd:PRK03918 428 IEELKKAKgkcpvcgrelTEEHRKELLEEYTAELKRIEKELkeiEEKERKLRKELRELEKVLKKESELIK---LKELAEQ 504
|
330
....*....|
gi 1988312894 1063 VKDLQQQLQE 1072
Cdd:PRK03918 505 LKELEEKLKK 514
|
|
| PHA03095 |
PHA03095 |
ankyrin-like protein; Provisional |
54-227 |
1.57e-05 |
|
ankyrin-like protein; Provisional
Pssm-ID: 222980 [Multi-domain] Cd Length: 471 Bit Score: 48.87 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 54 GKSAFHLAAMRGA-ASCLEVMIAHGSNVMSADGAGYNALH--LAAKYGHPQCLKQLLQASCVVDVVDSSGWTALH----- 125
Cdd:PHA03095 83 GFTPLHLYLYNATtLDVIKLLIKAGADVNAKDKVGRTPLHvyLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAvllks 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 126 HAAaggCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLC--RLLLQQGAAANDQDLQGRTALMLACEGASPETVE 203
Cdd:PHA03095 163 RNA---NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARivRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSL 239
|
170 180
....*....|....*....|....*.
gi 1988312894 204 V--LLQGGAQPGITDALGQDAAHYGA 227
Cdd:PHA03095 240 VlpLLIAGISINARNRYGQTPLHYAA 265
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
773-1105 |
2.10e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 773 RDSRLRELEAASACLdEARASRLLAEEEARGLRAelaqREEARLEQSReLEVLREQLATARATGE---QQRTAAAELGRA 849
Cdd:pfam12128 403 REARDRQLAVAEDDL-QALESELREQLEAGKLEF----NEEEYRLKSR-LGELKLRLNQATATPElllQLENFDERIERA 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 850 RDAAEARVAELPAACEEARQGLAELREASEALRQsvvpasEHRRLQeealELRGRAASLEQEVVA---TGKEAARLRAEL 926
Cdd:pfam12128 477 REEQEAANAEVERLQSELRQARKRRDQASEALRQ------ASRRLE----ERQSALDELELQLFPqagTLLHFLRKEAPD 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 927 ERERVCSVALSE-------HERIVGTLQANVAQLEGQLEELGR-RHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQ 998
Cdd:pfam12128 547 WEQSIGKVISPEllhrtdlDPEVWDGSVGGELNLYGVKLDLKRiDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQ 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 999 LRGLRTEAERARQAQSRAQEALDKAKEkdkKITELSKEVFNLKEALKEQPAALATPEVEALRD----------QVKDLQQ 1068
Cdd:pfam12128 627 LVQANGELEKASREETFARTALKNARL---DLRRLFDEKQSEKDKKNKALAERKDSANERLNSleaqlkqldkKHQAWLE 703
|
330 340 350
....*....|....*....|....*....|....*..
gi 1988312894 1069 QLQEAARDHSSVVALYRSHLLYAIQGQMDEDVQRILS 1105
Cdd:pfam12128 704 EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAA 740
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
940-1116 |
2.14e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 940 ERIVGTLQANVAQLEGQLEELGRRHEKTSAEV--FQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQ 1017
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALeeFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1018 EALDKAKEKDKKITElSKEVFNLKEALKEQPAALAT---------PEVEALRDQVKDLQQQL-QEAARDHSSVVALYRSh 1087
Cdd:COG3206 247 AQLGSGPDALPELLQ-SPVIQQLRAQLAELEAELAElsarytpnhPDVIALRAQIAALRAQLqQEAQRILASLEAELEA- 324
|
170 180
....*....|....*....|....*....
gi 1988312894 1088 lLYAIQGQMDEDVQRILSQILQMQRLQAQ 1116
Cdd:COG3206 325 -LQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
865-1076 |
2.49e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 865 EEARQGLAELREASEALRQSVvpasehRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVcsvALSEHERIVG 944
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKEL------AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA---ELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 945 TLQANVAQLEGQLEELGRRHEKT-----------SAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQ 1013
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 1014 SRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATpEVEALRDQVKDLQQQLQEAARD 1076
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAA-ELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
806-1035 |
2.60e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 806 AELAQREEARLEQ-SRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQS 884
Cdd:COG4942 19 ADAAAEAEAELEQlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 885 VVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERErvcsvALSEHERIVGTLQANVAQLEGQLEELGRRH 964
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----LAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1988312894 965 EKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSK 1035
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
727-894 |
3.07e-05 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 48.05 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 727 EAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAR---EDLRDRDSRLRELEAASAcldearasRLLAEeeARG 803
Cdd:pfam04632 167 DALRLAAAALAGAPGAEAFEAARLRLAADILALEALRSHAAfesPRGRARARALRRLLARML--------ALLPR--LRS 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 804 LRAELAQREEARLEQSRELEVLREQLATARATGEQQ---------RTAAAELGRARDAAEARVAELPAACEEARQGLAEL 874
Cdd:pfam04632 237 LARLLARLRTEGAGTVPELAALLDELAAWEAALAAEalqaalaalRARLRALRPALPLDFDTAAELLARLADLLAELAEA 316
|
170 180
....*....|....*....|
gi 1988312894 875 REASEALRQSVVPASEHRRL 894
Cdd:pfam04632 317 LASCRALRHPIAQGARPARL 336
|
|
| PHA02876 |
PHA02876 |
ankyrin repeat protein; Provisional |
22-218 |
3.11e-05 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 48.14 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 22 ERLLQavennDAPRVAALIARKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQ 101
Cdd:PHA02876 151 ERIQQ-----DELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNID 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 102 CLKQLLQASCVVDVVDSSgwtaLHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMchTDLCRL---LLQQGAA 178
Cdd:PHA02876 226 TIKAIIDNRSNINKNDLS----LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA--PSLSRLvpkLLERGAD 299
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1988312894 179 ANDQDLQGRTAL-MLACEGASPETVEVLLQGGAQPGITDAL 218
Cdd:PHA02876 300 VNAKNIKGETPLyLMAKNGYDTENIRTLIMLGADVNAADRL 340
|
|
| PHA02878 |
PHA02878 |
ankyrin repeat protein; Provisional |
54-216 |
3.37e-05 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222939 [Multi-domain] Cd Length: 477 Bit Score: 47.95 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 54 GKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHaAAGGCL 133
Cdd:PHA02878 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHI-SVGYCK 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 134 ScsevlcsfkahlnpqdrsgatpliiaaqmchTDLCRLLLQQGAAANDQD-LQGRTALMLACEgaSPETVEVLLQGGAQP 212
Cdd:PHA02878 247 D-------------------------------YDILKLLLEHGVDVNAKSyILGLTALHSSIK--SERKLKLLLEYGADI 293
|
....
gi 1988312894 213 GITD 216
Cdd:PHA02878 294 NSLN 297
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
322-460 |
4.21e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 46.88 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 322 RQQESPEASSLHILERQVQELQQLLVERQEEKESLGREVESLQSRLSLLENERENTSYDVTTLQDEEGELP---DLPGAE 398
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEgraGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1988312894 399 VLLSRQLSPSAQEHLASLQEQVAVLTRQNQELMEKVQILENFEKdETQMEVEALAEVIPLAL 460
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR-ESQAKIADLGRRLNVAL 185
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
760-1062 |
4.61e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 4.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 760 RAALEQAR--EDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAEL---AQREEARLEQSRE-LEVLREQLATAR 833
Cdd:pfam07888 28 RAELLQNRleECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELesrVAELKEELRQSREkHEELEEKYKELS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 834 ATGEQQRTAAAELGRARDAAEARV------------------AELPAACEEARQGLAELREASEALRQS----VVPASEH 891
Cdd:pfam07888 108 ASSEELSEEKDALLAQRAAHEARIreleediktltqrvlereTELERMKERAKKAGAQRKEEEAERKQLqaklQQTEEEL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 892 RRLQEEALELRGRAASLEQEVVA--------TGKEAARLRAELERERVCSVALSEHERIVGTLQAnVAQLEGQLEELGRR 963
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQlqdtittlTQKLTTAHRKEAENEALLEELRSLQERLNASERK-VEGLGEELSSMAAQ 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 964 HEKTSAEVFQVQREALFMKserhaaeAQLATAEQQLRglrteAERARQAQSRaqEALDKAKEKDK-KITELSKEVFNLKE 1042
Cdd:pfam07888 267 RDRTQAELHQARLQAAQLT-------LQLADASLALR-----EGRARWAQER--ETLQQSAEADKdRIEKLSAELQRLEE 332
|
330 340
....*....|....*....|
gi 1988312894 1043 ALKEQPAALATPEVEALRDQ 1062
Cdd:pfam07888 333 RLQEERMEREKLEVELGREK 352
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
755-898 |
6.02e-05 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 46.65 E-value: 6.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 755 DTTQLRAALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARA 834
Cdd:pfam00529 52 DPTDYQAALDSAEAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRV 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1988312894 835 TGEQ---QRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQEEA 898
Cdd:pfam00529 132 LAPIggiSRESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEA 198
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
688-1023 |
6.23e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 6.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 688 EASEKLQVELETRIRGLeealrqrereaaaeleaalgkceaAEAEAGRLRERVReaegsgasgggggdttQLRAALEQAR 767
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDL------------------------GEEEQLRVKEKIG----------------ELEAEIASLE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 768 EDLRDRDSRLRELEaasacldearasrllaeeearglrAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELG 847
Cdd:TIGR02169 308 RSIAEKERELEDAE------------------------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 848 RARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPA-SEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAEL 926
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELkRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 927 ErervcsvalseherivgTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTea 1006
Cdd:TIGR02169 444 E-----------------DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE-- 504
|
330
....*....|....*..
gi 1988312894 1007 eraRQAQSRAQEALDKA 1023
Cdd:TIGR02169 505 ---RVRGGRAVEEVLKA 518
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
757-1072 |
6.46e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 6.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 757 TQLRAALEQAREDLRDRDSRL-RELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARAT 835
Cdd:pfam15921 327 SQLRSELREAKRMYEDKIEELeKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 836 GEQQRTAAAELGRARDAAEARVAELPAACEEARqglaelreaSEALRQsvvpasehrrLQEEALELRGRAASLEQEVVAT 915
Cdd:pfam15921 407 DTGNSITIDHLRRELDDRNMEVQRLEALLKAMK---------SECQGQ----------MERQMAAIQGKNESLEKVSSLT 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 916 gkeaARLRAELERERVCSVALSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVqrealfmkseRHAAEAQLata 995
Cdd:pfam15921 468 ----AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKL----------RSRVDLKL--- 530
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1988312894 996 eQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEA--LRDQVKDLQQQLQE 1072
Cdd:pfam15921 531 -QELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKaqLEKEINDRRLELQE 608
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
708-1020 |
7.70e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 46.93 E-value: 7.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 708 LRQREREAAAEleaalgkCEAAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRDRDSRLRELEAASACL 787
Cdd:COG3903 557 LRGLLREGRRW-------LERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAAL 629
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 788 DEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEA 867
Cdd:COG3903 630 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAA 709
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 868 RQGLAELREASEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALSEHERIVGTLQ 947
Cdd:COG3903 710 ALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAA 789
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 948 ANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEAL 1020
Cdd:COG3903 790 AAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAA 862
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
292-488 |
7.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 292 RDAYEEIVRLRQERGRLLQkirgLEQHKERRQQESPEASSLHIL---------ERQVQELQQLLVERQEEKESLGREVES 362
Cdd:COG4913 238 ERAHEALEDAREQIELLEP----IRELAERYAAARERLAELEYLraalrlwfaQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 363 LQSRLSLLENERENtsydvttlqdeegelpdlpgaevlLSRQLSPSAQEHLASLQEQVAVLTRQNQELMEKVQILenfek 442
Cdd:COG4913 314 LEARLDALREELDE------------------------LEAQIRGNGGDRLEQLEREIERLERELEERERRRARL----- 364
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1988312894 443 detqmevEALAEVIPLALYDSlRAEFDQLRRQHAEALQALRQQETR 488
Cdd:COG4913 365 -------EALLAALGLPLPAS-AEEFAALRAEAAALLEALEEELEA 402
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
758-1079 |
9.34e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 9.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 758 QLRAALEQAREDLRDRDSRLRELeaaSACLDEARASRLLAEEEARGLRAELAQREEArLEQSRELEVLREQLATARATGE 837
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEM---ARELEELSARESDLEQDYQAASDHLNLVQTA-LRQQEKIERYQEDLEELTERLE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 838 QQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEAL-------RQSVVPASEHRRLQEEALELRGRAASLEQ 910
Cdd:COG3096 365 EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQqtraiqyQQAVQALEKARALCGLPDLTPENAEDYLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 911 EVVATGKEAARLRAELE-RERVCSVALSEHERIVGTLQANVAQLEgqleelgrrhektSAEVFQVQREALFMKSERHAAE 989
Cdd:COG3096 445 AFRAKEQQATEEVLELEqKLSVADAARRQFEKAYELVCKIAGEVE-------------RSQAWQTARELLRRYRSQQALA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 990 AQLATAEQQLRglrtEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATpEVEALRDQVKDLQQQ 1069
Cdd:COG3096 512 QRLQQLRAQLA----ELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEE-QAAEAVEQRSELRQQ 586
|
330
....*....|
gi 1988312894 1070 LQEAARDHSS 1079
Cdd:COG3096 587 LEQLRARIKE 596
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
758-1118 |
1.04e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 758 QLRAALEQAREDLRDRDS---RLRELEAASA--CLDEARASRLLAEEEAR--GLRAELAQREEARLEQSRELEVLREQLA 830
Cdd:PRK04863 517 QLRMRLSELEQRLRQQQRaerLLAEFCKRLGknLDDEDELEQLQEELEARleSLSESVSEARERRMALRQQLEQLQARIQ 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 831 TARATGEQQRTAAAELGRARDAAEARVAElPAACEEARQGLAE-LREASEALRQSvvpASEHRRLQEEALELRGRAASLE 909
Cdd:PRK04863 597 RLAARAPAWLAAQDALARLREQSGEEFED-SQDVTEYMQQLLErERELTVERDEL---AARKQALDEEIERLSQPGGSED 672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 910 QE---------------------------------------VVATGKEAARLRAELE----------------RERVCSV 934
Cdd:PRK04863 673 PRlnalaerfggvllseiyddvsledapyfsalygparhaiVVPDLSDAAEQLAGLEdcpedlyliegdpdsfDDSVFSV 752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 935 ALSEHERIVGTLQANV--------------------AQLEGQLEELGRRHEKTSAEVFQVQR--EALFMKSERHAA---- 988
Cdd:PRK04863 753 EELEKAVVVKIADRQWrysrfpevplfgraarekriEQLRAEREELAERYATLSFDVQKLQRlhQAFSRFIGSHLAvafe 832
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 989 ---EAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEK-------------------DKKITELSKEVFNLKEA--- 1043
Cdd:PRK04863 833 adpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGlsalnrllprlnlladetlADRVEEIREQLDEAEEAkrf 912
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1044 ----------LKEQPAALATP--EVEALRDQVKDLQQQLQEA---ARDHSSVVALyRSHLLYA----IQGQMDEDVQRIL 1104
Cdd:PRK04863 913 vqqhgnalaqLEPIVSVLQSDpeQFEQLKQDYQQAQQTQRDAkqqAFALTEVVQR-RAHFSYEdaaeMLAKNSDLNEKLR 991
|
490
....*....|....
gi 1988312894 1105 SQILQMQRLQAQGR 1118
Cdd:PRK04863 992 QRLEQAEQERTRAR 1005
|
|
| PLN03237 |
PLN03237 |
DNA topoisomerase 2; Provisional |
386-619 |
1.14e-04 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 46.39 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 386 DEEGELPDLPgaEVLLSRQLSPSAQEHLASLQeqVAVLTrqnqelMEKVQILENfEKDETQMEVEALAEVIPLALY---- 461
Cdd:PLN03237 1090 DDAAEEEEEI--DVSSSSGVRGSDYDYLLSMA--IGTLT------LEKVQELCA-DRDKLNIEVEDLKKTTPKSLWlkdl 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 462 DSLRAEFDQLRRQHAEALQALRQQetrevprEEGAACGESEvAGATATKNGPThmelngsvAPETKVNGAETIDEEAAgD 541
Cdd:PLN03237 1159 DALEKELDKLDKEDAKAEEAREKL-------QRAAARGESG-AAKKVSRQAPK--------KPAPKKTTKKASESETT-E 1221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 542 ETMEARTMEAEATGAEA-----TGAEATGAKVTETKPTGAEVREMETTEEEANMETKPTGAQATDTETTGVEAMGVEATK 616
Cdd:PLN03237 1222 ETYGSSAMETENVAEVVkpkgrAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARK 1301
|
...
gi 1988312894 617 TKA 619
Cdd:PLN03237 1302 KPL 1304
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
775-885 |
1.17e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 46.23 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 775 SRLR-ELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSR-ELEVLREQLATARATGEQQRTAAAELGRARDA 852
Cdd:COG0542 400 ARVRmEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRdELAELEEELEALKARWEAEKELIEEIQELKEE 479
|
90 100 110
....*....|....*....|....*....|...
gi 1988312894 853 AEARVAELPAACEEARQGLAELREASEALRQSV 885
Cdd:COG0542 480 LEQRYGKIPELEKELAELEEELAELAPLLREEV 512
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
691-1083 |
1.21e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 691 EKLQVELETRIRGLEEALRQREREAAAELeaalgKCEAAEAEAGRLRERVReaegsgasGGGGGDTTQLRAALEQAREDL 770
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELRELEE-----ELEELEAELAELQEELE--------ELLEQLSLATEEELQDLAEEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 771 RDRDSRLRELEAAsacLDEARASRLLAEEEARGLRAELaqREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRAR 850
Cdd:COG4717 202 EELQQRLAELEEE---LEEAQEELEELEEELEQLENEL--EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 851 DAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELEREr 930
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE- 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 931 vcsvaLSEHERivgtlQANVAQLEGQLEELGRRHEKTSAEVFqvqREALFMKSERHAAEAQLATAEQQLRGLRTEAERAR 1010
Cdd:COG4717 356 -----AEELEE-----ELQLEELEQEIAALLAEAGVEDEEEL---RAALEQAEEYQELKEELEELEEQLEELLGELEELL 422
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1988312894 1011 QA------QSRAQEALDKAKEKDKKITELSKEVFNLKEALKEqpaALATPEVEALRDQVKDLQQQLQEAARDHSSVVAL 1083
Cdd:COG4717 423 EAldeeelEEELEELEEELEELEEELEELREELAELEAELEQ---LEEDGELAELLQELEELKAELRELAEEWAALKLA 498
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
691-1011 |
1.42e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 691 EKLQVELETRIRGLEEalRQREREAAAELEAALGKCEAAEAEAGRL-----RERVREAEGSGASGGGGGDTTQLRAALEQ 765
Cdd:pfam17380 299 ERLRQEKEEKAREVER--RRKLEEAEKARQAEMDRQAAIYAEQERMamereRELERIRQEERKRELERIRQEEIAMEISR 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 766 AREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRaelaqreearlEQSRELEVLREQLATARatgeQQRTAAAE 845
Cdd:pfam17380 377 MRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQ-----------QQKVEMEQIRAEQEEAR----QREVRRLE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 846 LGRARDAAEARVAELpaaceEARQGLAELREASEALRQSVVPASEHRRLQEEALELRGRAasLEQEVvatgkeAARLRAE 925
Cdd:pfam17380 442 EERAREMERVRLEEQ-----ERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI--LEKEL------EERKQAM 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 926 LERERVCSVALSEHERivgTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQlaTAEQQLRGLRTE 1005
Cdd:pfam17380 509 IEEERKRKLLEKEMEE---RQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAM--EREREMMRQIVE 583
|
....*.
gi 1988312894 1006 AERARQ 1011
Cdd:pfam17380 584 SEKARA 589
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
691-1047 |
1.57e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 691 EKLQVELET------RIRGLEEALRQREREAAAELEAALGKCEAAEAEAGRLRERVreaegsgasGGGGGDTTQLRAALE 764
Cdd:TIGR02169 684 EGLKRELSSlqselrRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL---------EELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 765 QAREDLRDRDSRLRELEAASACLDEARAS--RLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTA 842
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLHKLEEALNDleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 843 AAELGRARDAAEARVAELPAACEEARQGLAELreasealrqsvvpASEHRRLQEEALELRGRAASLEQEVvatGKEAARL 922
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEEL-------------EEELEELEAALRDLESRLGDLKKER---DELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 923 RAELERERVCSVALSEHERIVGTLQANVAQLEGQLEELGRRH--------EKTSAEVFQVQREALfmkserhaaeaqlat 994
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKgedeeipeEELSLEDVQAELQRV--------------- 963
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 995 aEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQ 1047
Cdd:TIGR02169 964 -EEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
767-885 |
1.95e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 767 REDLRDRDSRLRELEAASACLDEARAsrlLAEEEARGLRAELAQreearleqsrelevLREQLATARATGEQQRTAAAEL 846
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLS---LERQGNQDLQDSVAN--------------LRASLSAAEAERSRLQALLAEL 107
|
90 100 110
....*....|....*....|....*....|....*....
gi 1988312894 847 GRARDAAEARVAELPAACEEARQGLAELREASEALRQSV 885
Cdd:PRK09039 108 AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQI 146
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
293-485 |
2.06e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 293 DAYEEIVRLRQERGRLLQKIRGLEQHKERRQQEspeassLHILERQVQELQQLLVERQEEK--ESLGREVESLQSRLSLL 370
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAE------LDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 371 enerENTSYDVTTLQDEEGELpdlpGAEVLLSRQLSPSAQEHLASLQEQVAVLTRQNQELMEKVQILENFEKDETQMEVE 450
Cdd:COG4913 681 ----DASSDDLAALEEQLEEL----EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE 752
|
170 180 190
....*....|....*....|....*....|....*.
gi 1988312894 451 A-LAEVIPLALYDSLRAEFDQLRRQHAEALQALRQQ 485
Cdd:COG4913 753 ErFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
296-488 |
2.82e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 296 EEIVRLRQERGRLLQKIRGLEQH-KERRQQESPEASSLHILERQVQELQQLLVERQEEKESLGREVESLQSRLSLLENER 374
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKElAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 375 ENTSYDVTTLQDEEGELPDLPGAEVLLS--------------RQLSPSAQEHLASLQEQVAVLTRQNQELMEKVQILENF 440
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSpedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1988312894 441 eKDETQMEVEALAEVIplALYDSLRAEFDQLRRQHAEALQALRQQETR 488
Cdd:COG4942 180 -LAELEEERAALEALK--AERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| PTZ00322 |
PTZ00322 |
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
124-206 |
3.01e-04 |
|
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 44.89 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 124 LHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASPETVE 203
Cdd:PTZ00322 86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ 165
|
...
gi 1988312894 204 VLL 206
Cdd:PTZ00322 166 LLS 168
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
768-1085 |
3.06e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.13 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 768 EDLRDRDSrLRELEAASACLDEARASRllAEEEA---RGLRAELAQREEARLE-QSRELEVLREQLATARatgEQQRTAA 843
Cdd:pfam07111 325 QDLEHRDS-VKQLRGQVAELQEQVTSQ--SQEQAilqRALQDKAAEVEVERMSaKGLQMELSRAQEARRR---QQQQTAS 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 844 AE--LGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQEEALELrgraASLEQEVVATGKEAAR 921
Cdd:pfam07111 399 AEeqLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAL----AQLRQESCPPPPPAPP 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 922 LRAELERErvCSVALSEHERIVGTLQANVAQLEgqlEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLrg 1001
Cdd:pfam07111 475 VDADLSLE--LEQLREERNRLDAELQLSAHLIQ---QEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQL-- 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1002 lrteaERARQAQsraQEALDKAKEKDKKITElSKEVFNlkEALKEQPAALATpeveALRDQVKDLQQQLQEAARDHSSVV 1081
Cdd:pfam07111 548 -----EVARQGQ---QESTEEAASLRQELTQ-QQEIYG--QALQEKVAEVET----RLREQLSDTKRRLNEARREQAKAV 612
|
....
gi 1988312894 1082 ALYR 1085
Cdd:pfam07111 613 VSLR 616
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
951-1044 |
3.52e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 44.94 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 951 AQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAErarQAQSRAQEALDKAKEKDKKI 1030
Cdd:PRK11448 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLE---QLQEKAAETSQERKQKRKEI 221
|
90
....*....|....
gi 1988312894 1031 TELSKEVFNLKEAL 1044
Cdd:PRK11448 222 TDQAAKRLELSEEE 235
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
936-1074 |
3.58e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 936 LSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTE---------- 1005
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeyealqkei 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1988312894 1006 ---AERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATpEVEALRDQVKDLQQQLQEAA 1074
Cdd:COG1579 99 eslKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE-ELAELEAELEELEAEREELA 169
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
893-1046 |
3.95e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 893 RLQE---EALELRGRAASLEQEVVATGKEAARLRAELErervcsvalsEHERIVGTLQANVAQLEGQLEELGRRHEKTSA 969
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLE----------AAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 970 EVFQV--QREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEK-DKKITELSKEVFNLKEALKE 1046
Cdd:COG1579 81 QLGNVrnNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAElEEKKAELDEELAELEAELEE 160
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
813-1072 |
4.31e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 813 EARLEQ-SRELEVLREQLATARA-TGEQQRT----------------------AAAELGRARDAAEARVAELPAACEEAR 868
Cdd:PRK04863 785 EKRIEQlRAEREELAERYATLSFdVQKLQRLhqafsrfigshlavafeadpeaELRQLNRRRVELERALADHESQEQQQR 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 869 QGLAELREASEALR----QSVVPASEHrrLQEEALELRGRAASLEqevvatgkEAARLRAELERervcsvALSEHERIVG 944
Cdd:PRK04863 865 SQLEQAKEGLSALNrllpRLNLLADET--LADRVEEIREQLDEAE--------EAKRFVQQHGN------ALAQLEPIVS 928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 945 TLQA---NVAQLEGQLEELGRRHEKTSAEVFQ----VQREALFMKSErhaaEAQLATAEQQLR-GLRTEAERARQAQSRA 1016
Cdd:PRK04863 929 VLQSdpeQFEQLKQDYQQAQQTQRDAKQQAFAltevVQRRAHFSYED----AAEMLAKNSDLNeKLRQRLEQAEQERTRA 1004
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1988312894 1017 QEALdkaKEKDKKITELSKEVFNLKEALkeqpaalatpevEALRDQVKDLQQQLQE 1072
Cdd:PRK04863 1005 REQL---RQAQAQLAQYNQVLASLKSSY------------DAKRQMLQELKQELQD 1045
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
813-1072 |
4.69e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 813 EARLEQ-SRELEVLREQLATARA-TGEQQRTAA----------------------AELGRARDAAEARVAELPAACEEAR 868
Cdd:COG3096 784 EKRLEElRAERDELAEQYAKASFdVQKLQRLHQafsqfvgghlavafapdpeaelAALRQRRSELERELAQHRAQEQQLR 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 869 QGLAELREASEALRQsVVPASEHrrLQEEALELRGRAAsleQEVVATGKEAARLRAElerervCSVALSEHERIVGTLQ- 947
Cdd:COG3096 864 QQLDQLKEQLQLLNK-LLPQANL--LADETLADRLEEL---REELDAAQEAQAFIQQ------HGKALAQLEPLVAVLQs 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 948 --ANVAQLEGQLEELGRRHEKTSAEVFQ----VQREALFMKSErhaAEAQLATAEQQLRGLRTEAERARQAQSRAQEALd 1021
Cdd:COG3096 932 dpEQFEQLQADYLQAKEQQRRLKQQIFAlsevVQRRPHFSYED---AVGLLGENSDLNEKLRARLEQAEEARREAREQL- 1007
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1988312894 1022 kaKEKDKKITELSKEVFNLKEALkeqpaalatpevEALRDQVKDLQQQLQE 1072
Cdd:COG3096 1008 --RQAQAQYSQYNQVLASLKSSR------------DAKQQTLQELEQELEE 1044
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
756-978 |
5.33e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 756 TTQLRAALEQAREDLrdrdSRLRELEAASACLDEARAsrllaEEEARGLRAELAQREEARL---EQSRELEVLREQLATA 832
Cdd:COG3096 859 EQQLRQQLDQLKEQL----QLLNKLLPQANLLADETL-----ADRLEELREELDAAQEAQAfiqQHGKALAQLEPLVAVL 929
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 833 RATGEQQRTAAAELGRA---RDAAEAR-------VAELPA-ACEEARQGLAELREASEALRQSVVPASEHRRLQEEALE- 900
Cdd:COG3096 930 QSDPEQFEQLQADYLQAkeqQRRLKQQifalsevVQRRPHfSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRq 1009
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 901 --------------LRGRA-------ASLEQEVVATGKEA---ARLRAELERERVCSvALSEHERIVGTLQANVAQLEGQ 956
Cdd:COG3096 1010 aqaqysqynqvlasLKSSRdakqqtlQELEQELEELGVQAdaeAEERARIRRDELHE-ELSQNRSRRSQLEKQLTRCEAE 1088
|
250 260
....*....|....*....|..
gi 1988312894 957 LEELGRRHEKTSAEVFQVQREA 978
Cdd:COG3096 1089 MDSLQKRLRKAERDYKQEREQV 1110
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
688-883 |
5.35e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 688 EASEKLQVELETRIRGLEEALRQrereaaaeleaalgkceaAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAR 767
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEE------------------AEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEAR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 768 EDLRDRDSRLRELEAASAcLDEARASRLLAEEEARGLRAELAQREEARLEQSR-------ELEVLREQLATARATGEQQ- 839
Cdd:COG3206 233 AELAEAEARLAALRAQLG-SGPDALPELLQSPVIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEa 311
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1988312894 840 RTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQ 883
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR 355
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
685-1076 |
6.54e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 685 GAAEASEKLQVELETRIRGLEEALRQREREAAAELeaalgKCEAAEAEAGRLRE-RVREAEGSGASGGGGGDTTQLRAAL 763
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-----ELKEKAEEYIKLSEfYEEYLDELREIEKRLSRLEEEINGI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 764 EQAREDLRDRDSRLREL---------------------EAASACLDEARA-SRLLAEEEARGLRAELAQREEARLEQSRE 821
Cdd:PRK03918 327 EERIKELEEKEERLEELkkklkelekrleeleerhelyEEAKAKKEELERlKKRLTGLTPEKLEKELEELEKAKEEIEEE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 822 LEVLREQLATARATGEQQRTAAAELGRA--------RDAAE-----------ARVAELPAACEEARQGLAELREASEALR 882
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgRELTEehrkelleeytAELKRIEKELKEIEEKERKLRKELRELE 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 883 QSVVPASEHRRLQEEALELRGRAASLE------------------QEVVATGKEAARLRAELERERVCSVALSEHERIVG 944
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKkynleelekkaeeyeklkEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 945 TLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQaqsRAQEALDKAK 1024
Cdd:PRK03918 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFE---ELAETEKRLE 643
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1988312894 1025 EKDKKITELSKEvFNLKE--ALKEQPAALATpEVEALRDQVKDLQQQLQEAARD 1076
Cdd:PRK03918 644 ELRKELEELEKK-YSEEEyeELREEYLELSR-ELAGLRAELEELEKRREEIKKT 695
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
757-1046 |
6.79e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 757 TQLRAALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARG---------------------LRAELAQREEAR 815
Cdd:PRK10929 140 SQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKalvdelelaqlsannrqelarLRSELAKKRSQQ 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 816 LEQsrELEVLREQLATARatgeqQRTAAAELGRARDAAEaRVAELPAACEEArqgLAELREASEALRQSV----VPASEH 891
Cdd:PRK10929 220 LDA--YLQALRNQLNSQR-----QREAERALESTELLAE-QSGDLPKSIVAQ---FKINRELSQALNQQAqrmdLIASQQ 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 892 RRLQEEALELRgraasleqEVVATGKEAARLRAElerervcSVALSEherivgTLQANVA---------QLEGQLEELgr 962
Cdd:PRK10929 289 RQAASQTLQVR--------QALNTLREQSQWLGV-------SNALGE------ALRAQVArlpempkpqQLDTEMAQL-- 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 963 rhektsaevfQVQR---EALFmksERHAAEAQLATAEQQlrGLRTEAERARQAQSRAQEALDKA--KEKDKKITELSK-E 1036
Cdd:PRK10929 346 ----------RVQRlryEDLL---NKQPQLRQIRQADGQ--PLTAEQNRILDAQLRTQRELLNSllSGGDTLILELTKlK 410
|
330
....*....|..
gi 1988312894 1037 VFN--LKEALKE 1046
Cdd:PRK10929 411 VANsqLEDALKE 422
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
296-473 |
8.22e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 296 EEIVRLRQERGRLLQKIrgLEQHKERRQQESPEASSLHILERQVQELQQL---LVERQEEKESLGREVESLQSRLSLLEN 372
Cdd:PRK03918 189 ENIEELIKEKEKELEEV--LREINEISSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 373 ERENTSYDVTTLQDEEGELPDLPGAE---VLLSRQLSPSAQE------HLASLQEQVAVLTRQNQELMEKVQILENFEK- 442
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAeeyIKLSEFYEEYLDElreiekRLSRLEEEINGIEERIKELEEKEERLEELKKk 346
|
170 180 190
....*....|....*....|....*....|..
gi 1988312894 443 -DETQMEVEALAEviPLALYDSLRAEFDQLRR 473
Cdd:PRK03918 347 lKELEKRLEELEE--RHELYEEAKAKKEELER 376
|
|
| Ank_4 |
pfam13637 |
Ankyrin repeats (many copies); |
186-238 |
8.35e-04 |
|
Ankyrin repeats (many copies);
Pssm-ID: 372654 [Multi-domain] Cd Length: 54 Bit Score: 38.41 E-value: 8.35e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 186 GRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAAHYGALAGDKLILHLL 238
Cdd:pfam13637 1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLL 53
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
761-1037 |
9.77e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 43.14 E-value: 9.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 761 AALEQAREDLRDRDSRLRELEAAsacLDEARASRLLAEEEARGLRAELAQREEARLEQS--RELEVLREQLATARATGEQ 838
Cdd:COG0497 151 AGLEELLEEYREAYRAWRALKKE---LEELRADEAERARELDLLRFQLEELEAAALQPGeeEELEEERRRLSNAEKLREA 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 839 QRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVpasehrRLQEEALELRGRAASLEQevvatgkE 918
Cdd:COG0497 228 LQEALEALSGGEGGALDLLGQALRALERLAEYDPSLAELAERLESALI------ELEEAASELRRYLDSLEF-------D 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 919 AARLrAELErervcsvalsehERIvgtlqanvaqleGQLEELGRRHEKTSAEVFQVQREAlfmkserhAAE-AQLATAEQ 997
Cdd:COG0497 295 PERL-EEVE------------ERL------------ALLRRLARKYGVTVEELLAYAEEL--------RAElAELENSDE 341
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1988312894 998 QLRGLRTEAERARQAQSRAQEALDKAKEkdKKITELSKEV 1037
Cdd:COG0497 342 RLEELEAELAEAEAELLEAAEKLSAARK--KAAKKLEKAV 379
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
729-1020 |
1.02e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 43.47 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 729 AEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRDRDSRLRELEAASACLDEARA------SRLLAEEEAR 802
Cdd:COG3903 487 RAAARRRHADYYLALAERAAAELRGPDQLAWLARLDAEHDNLRAALRWALAHGDAELALRLAAAlapfwfLRGLLREGRR 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 803 GLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALR 882
Cdd:COG3903 567 WLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAA 646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 883 QSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALSEHERIVGTLQANVAQLEGQLEELGR 962
Cdd:COG3903 647 AAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAA 726
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312894 963 RHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEAL 1020
Cdd:COG3903 727 LLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAA 784
|
|
| PHA02876 |
PHA02876 |
ankyrin repeat protein; Provisional |
77-211 |
1.08e-03 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165207 [Multi-domain] Cd Length: 682 Bit Score: 43.13 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 77 GSNVMSADGAGYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCS-EVLCSFKAHLNPQDRSGAT 155
Cdd:PHA02876 365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSvKTLIDRGANVNSKNKDLST 444
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1988312894 156 PLIIAAQM-CHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASpeTVEVLLQGGAQ 211
Cdd:PHA02876 445 PLHYACKKnCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHG--IVNILLHYGAE 499
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
39-94 |
1.13e-03 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 38.10 E-value: 1.13e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1988312894 39 LIARKGLVPTKLDPEGKSAFHLAAMRGAASCLEVMIAHGSNVMSADGAGYNALHLA 94
Cdd:pfam13857 1 LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
|
|
| PTZ00322 |
PTZ00322 |
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional |
161-266 |
1.35e-03 |
|
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Pssm-ID: 140343 [Multi-domain] Cd Length: 664 Bit Score: 42.96 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 161 AQMCHTDLC-----------RLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAAHYGALA 229
Cdd:PTZ00322 79 AHMLTVELCqlaasgdavgaRILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN 158
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1988312894 230 GDKLILHLLQEAAQRP------SPPSALTEDDSGEASSQNSMS 266
Cdd:PTZ00322 159 GFREVVQLLSRHSQCHfelganAKPDSFTGKPPSLEDSPISSH 201
|
|
| ANK |
smart00248 |
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ... |
87-115 |
1.52e-03 |
|
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Pssm-ID: 197603 [Multi-domain] Cd Length: 30 Bit Score: 37.18 E-value: 1.52e-03
10 20
....*....|....*....|....*....
gi 1988312894 87 GYNALHLAAKYGHPQCLKQLLQASCVVDV 115
Cdd:smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
|
|
| PHA02878 |
PHA02878 |
ankyrin repeat protein; Provisional |
103-242 |
1.60e-03 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 222939 [Multi-domain] Cd Length: 477 Bit Score: 42.17 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 103 LKQLLQASCVVDVVD-SSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAAND 181
Cdd:PHA02878 150 TKLLLSYGADINMKDrHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA 229
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 182 QDLQGRTALMLACEGA-SPETVEVLLQGGAQPGITDA-LGQDAAHYGALAGDKLILhLLQEAA 242
Cdd:PHA02878 230 RDKCGNTPLHISVGYCkDYDILKLLLEHGVDVNAKSYiLGLTALHSSIKSERKLKL-LLEYGA 291
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
113-160 |
2.05e-03 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 37.33 E-value: 2.05e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1988312894 113 VDVVDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNPQDRSGATPLIIA 160
Cdd:pfam13857 9 LNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
936-1076 |
2.06e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 936 LSEHERIVGTLQANVAQLEgQLEELGRRHEKTSAE------------VFQVQREALFMKSERHAAEAQLATAEQQLRGLR 1003
Cdd:COG4913 237 LERAHEALEDAREQIELLE-PIRELAERYAAARERlaeleylraalrLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1004 TEAERARQAQSRAQEALDKAkeKDKKITELSKEVFNLKEALKEQ----------------PAALATPEVEALRDQVKDLQ 1067
Cdd:COG4913 316 ARLDALREELDELEAQIRGN--GGDRLEQLEREIERLERELEERerrrarleallaalglPLPASAEEFAALRAEAAALL 393
|
....*....
gi 1988312894 1068 QQLQEAARD 1076
Cdd:COG4913 394 EALEEELEA 402
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
755-1061 |
2.29e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 755 DTTQLRAALEQAREDLrdrdSRLRELEAASACLDEARASRLLAEEEARGLRAELA----QREEARLEQ-SRELEVLR--- 826
Cdd:PRK04863 859 QEQQQRSQLEQAKEGL----SALNRLLPRLNLLADETLADRVEEIREQLDEAEEAkrfvQQHGNALAQlEPIVSVLQsdp 934
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 827 EQLATARATGEQ----QRTAAAelgRARDAAE--ARVAELpaACEEARQGLAELREASEALRQSVVPASEHRRLQEEalE 900
Cdd:PRK04863 935 EQFEQLKQDYQQaqqtQRDAKQ---QAFALTEvvQRRAHF--SYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRARE--Q 1007
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 901 LRGRAASLEQevvatgkeAARLRAELErervcsvalSEHErivgTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALF 980
Cdd:PRK04863 1008 LRQAQAQLAQ--------YNQVLASLK---------SSYD----AKRQMLQELKQELQDLGVPADSGAEERARARRDELH 1066
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 981 M-----KSERHAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPE 1055
Cdd:PRK04863 1067 ArlsanRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYLSADE 1146
|
....*.
gi 1988312894 1056 VEALRD 1061
Cdd:PRK04863 1147 LRSMSD 1152
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
684-889 |
2.36e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 684 PGAAEASEKLQVELEtRIRGLEEALRQREREAAAELEAALGKCEAAEAEAGRLRERVREAEGSGASGGGGGDTTQ----- 758
Cdd:COG4942 16 AAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkeiae 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 759 LRAALEQAREDLRD---------RDSRLRELEAASACLDEARASRLLAE---------EEARGLRAELAQREEARLEQSR 820
Cdd:COG4942 95 LRAELEAQKEELAEllralyrlgRQPPLALLLSPEDFLDAVRRLQYLKYlaparreqaEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 821 ELEVLREQLATARATGEQQR----TAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPAS 889
Cdd:COG4942 175 ELEALLAELEEERAALEALKaerqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PHA02875 |
PHA02875 |
ankyrin repeat protein; Provisional |
87-245 |
2.68e-03 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165206 [Multi-domain] Cd Length: 413 Bit Score: 41.52 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 87 GYNALHLAAKYGHPQCLKQLLQASCVVDVVDSSGWTALHHAAAGGCLSCSEVLCSFKAHLNpqD---RSGATPLIIAAQM 163
Cdd:PHA02875 35 GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD--DvfyKDGMTPLHLATIL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 164 CHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAAHYGALAGDKLILHLLQEAAQ 243
Cdd:PHA02875 113 KKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192
|
..
gi 1988312894 244 RP 245
Cdd:PHA02875 193 NI 194
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
758-1101 |
3.18e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.48 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 758 QLRAALEQAREDLRD-RDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARleqsRELEVLREQLATARATg 836
Cdd:COG5185 250 QTSDKLEKLVEQNTDlRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIK----KATESLEEQLAAAEAE- 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 837 eqqrtaaAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATG 916
Cdd:COG5185 325 -------QELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKESLDEIP 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 917 KEAARLRAELERervcsvalseherivgTLQANVAQLEGQLEELGRRHEKTSAEVFQVQREALFMKSERHAAEaQLATAE 996
Cdd:COG5185 398 QNQRGYAQEILA----------------TLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVM-READEE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 997 QQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQpaalatpeVEALRDQVKDLQQQLQEAARD 1076
Cdd:COG5185 461 SQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQ--------LEGVRSKLDQVAESLKDFMRA 532
|
330 340
....*....|....*....|....*...
gi 1988312894 1077 HSSVVALYRS---HLLYAIQGQMDEDVQ 1101
Cdd:COG5185 533 RGYAHILALEnliPASELIQASNAKTDG 560
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
763-938 |
3.24e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 763 LEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTA 842
Cdd:PRK04863 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 843 AAELGRARD---AAEARVAEL----------PAACEEARQGLAE-LREASEALRQSvvpASEHRRLQEEALELRGRAASl 908
Cdd:PRK04863 595 IQRLAARAPawlAAQDALARLreqsgeefedSQDVTEYMQQLLErERELTVERDEL---AARKQALDEEIERLSQPGGS- 670
|
170 180 190
....*....|....*....|....*....|
gi 1988312894 909 eqevvatgkEAARLRAelERERVCSVALSE 938
Cdd:PRK04863 671 ---------EDPRLNA--LAERFGGVLLSE 689
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
887-1000 |
3.27e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 887 PASEHRRLQEEALELRgraasleQEVVATGKEAARLRAELERERVCSVALsehERIVGTLQANVAQLEGQLEELGRRHEK 966
Cdd:PRK11448 140 PENLLHALQQEVLTLK-------QQLELQAREKAQSQALAEAQQQELVAL---EGLAAELEEKQQELEAQLEQLQEKAAE 209
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1988312894 967 TSAEVFQVQREAlfmkSERHAAEAQLATAE------QQLR 1000
Cdd:PRK11448 210 TSQERKQKRKEI----TDQAAKRLELSEEEtrilidQQLR 245
|
|
| Ank |
pfam00023 |
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
87-117 |
3.32e-03 |
|
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.
Pssm-ID: 459634 [Multi-domain] Cd Length: 34 Bit Score: 36.11 E-value: 3.32e-03
10 20 30
....*....|....*....|....*....|..
gi 1988312894 87 GYNALHLAA-KYGHPQCLKQLLQASCVVDVVD 117
Cdd:pfam00023 2 GNTPLHLAAgRRGNLEIVKLLLSKGADVNARD 33
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
761-1075 |
3.39e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 761 AALEQAREDLRDRDS---RLRELEAASACLDEARaSRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGE 837
Cdd:COG3096 492 QAWQTARELLRRYRSqqaLAQRLQQLRAQLAELE-QRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELE 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 838 QQ----RTAAAELGRARDAAEARVAELPA---ACEEARQGLAELREAS-EAL--RQSVVPASEH-----RRLQEEALELR 902
Cdd:COG3096 571 EQaaeaVEQRSELRQQLEQLRARIKELAArapAWLAAQDALERLREQSgEALadSQEVTAAMQQllereREATVERDELA 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 903 GRAASLEQEV----VATGKEAARLRAEleRERVCSVALSE---------------------HERIVGTLQANVAQLEG-- 955
Cdd:COG3096 651 ARKQALESQIerlsQPGGAEDPRLLAL--AERLGGVLLSEiyddvtledapyfsalygparHAIVVPDLSAVKEQLAGle 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 956 ----------------------------------------------------------------QLEELGRRHEKTSAEV 971
Cdd:COG3096 729 dcpedlyliegdpdsfddsvfdaeeledavvvklsdrqwrysrfpevplfgraarekrleelraERDELAEQYAKASFDV 808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 972 FQVQR--EAL--FMKSERHAA-----EAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKEKdkkitelskevFNLKE 1042
Cdd:COG3096 809 QKLQRlhQAFsqFVGGHLAVAfapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQ-----------LQLLN 877
|
410 420 430
....*....|....*....|....*....|...
gi 1988312894 1043 ALKEQPAALATPEVEALRDQVKDLQQQLQEAAR 1075
Cdd:COG3096 878 KLLPQANLLADETLADRLEELREELDAAQEAQA 910
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
172-225 |
3.45e-03 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 36.94 E-value: 3.45e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1988312894 172 LLQQG-AAANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDALGQDAAHY 225
Cdd:pfam13857 1 LLEHGpIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDL 55
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
986-1073 |
3.81e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 986 HAAEAQLATAEQQLRGLRTEAERARQAQSRAQEALDKAKekdKKITELSKEVfnlkEALKEQPAALATPEVEALRDQVKD 1065
Cdd:TIGR04320 257 AALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQ---AALATAQKEL----ANAQAQALQTAQNNLATAQAALAN 329
|
....*...
gi 1988312894 1066 LQQQLQEA 1073
Cdd:TIGR04320 330 AEARLAKA 337
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
291-901 |
4.19e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 291 DRDAYEEIVRLRQERGRLLQKIRGLEQHKERRQQESPEASS-----------LHILERQVQELQQLLVERQEEKESLGRE 359
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleeheerreeLETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 360 VESLQSRLSLLENERENT--SYDVTTLQDE--EGELPDLPGAEVLLSRQLS---PSAQEHLA---SLQEQVAVLTRQNQE 429
Cdd:PRK02224 281 VRDLRERLEELEEERDDLlaEAGLDDADAEavEARREELEDRDEELRDRLEecrVAAQAHNEeaeSLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 430 LMEKVQILENfEKDETQMEVEALAEVIplalyDSLRAEFDQLRRQHAEALQAL-RQQETREVPREEGAACGESEVAGATA 508
Cdd:PRK02224 361 LREEAAELES-ELEEAREAVEDRREEI-----EELEEEIEELRERFGDAPVDLgNAEDFLEELREERDELREREAELEAT 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 509 TKNGPTHMELNGSVAPETKVNGAETIDEEAAGDETMEARTMEAEATGAEATGAEATGAKVTETKPTGAEVREMETtEEEA 588
Cdd:PRK02224 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED-RIER 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 589 NMETKPTGAQATDTETTGVEAMGVEATKTKAEEAEMQAygvgagqaeppvtgttnmEATGSRATGMEstgvsatgvenpg 668
Cdd:PRK02224 514 LEERREDLEELIAERRETIEEKRERAEELRERAAELEA------------------EAEEKREAAAE------------- 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 669 veatvpgisagpiLHPGAAEASEKLQvELETRIRGLEEALRQREREAAAELEAalgkcEAAEAEAGRLRERVReaegsga 748
Cdd:PRK02224 563 -------------AEEEAEEAREEVA-ELNSKLAELKERIESLERIRTLLAAI-----ADAEDEIERLREKRE------- 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 749 sgggggdttQLRAALEQAREDLRDRDSRLRELEAAsacLDEARAsrllaeEEARGLRAELAQREEARLEQSRELEVLREQ 828
Cdd:PRK02224 617 ---------ALAELNDERRERLAEKRERKRELEAE---FDEARI------EEAREDKERAEEYLEQVEEKLDELREERDD 678
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1988312894 829 LATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEhrRLQEEALEL 901
Cdd:PRK02224 679 LQAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLE--RMLNETFDL 749
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
806-960 |
4.33e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 806 AELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAEL---REASEALR 882
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnnKEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312894 883 QSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERvcsvalSEHERIVGTLQANVAQLEGQLEEL 960
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKK------AELDEELAELEAELEELEAEREEL 168
|
|
| PHA02874 |
PHA02874 |
ankyrin repeat protein; Provisional |
62-238 |
4.79e-03 |
|
ankyrin repeat protein; Provisional
Pssm-ID: 165205 [Multi-domain] Cd Length: 434 Bit Score: 40.72 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 62 AMR-GAASCLEVMIAHGSNVMSADGAGYNALHLAAKYGHPQCLKQLLqascvVDVVDSSGWTA--LHHAAAGGCLSCSev 138
Cdd:PHA02874 42 AIRsGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLI-----DNGVDTSILPIpcIEKDMIKTILDCG-- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 139 lcsfkAHLNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALMLACEGASPETVEVLLQGGAQPGITDAL 218
Cdd:PHA02874 115 -----IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN 189
|
170 180
....*....|....*....|
gi 1988312894 219 GQDAAHYGALAGDKLILHLL 238
Cdd:PHA02874 190 GESPLHNAAEYGDYACIKLL 209
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
793-1116 |
5.03e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 793 SRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAaceearqGLA 872
Cdd:pfam01576 202 GRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEA-------QIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 873 ELREASEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEaarLRAELERErvcsvaLSEHERivgTLQANVAQ 952
Cdd:pfam01576 275 ELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQE---LRSKREQE------VTELKK---ALEEETRS 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 953 LEGQLEELGRRH----EKTSAEVFQVQREALFMKSERHAAE---AQLATAEQQLRGLRTEAERARQA--------QSRAQ 1017
Cdd:pfam01576 343 HEAQLQEMRQKHtqalEELTEQLEQAKRNKANLEKAKQALEsenAELQAELRTLQQAKQDSEHKRKKlegqlqelQARLS 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1018 EALDKAKEKDKKITELSKEVFNLKEALK--EQPAALATPEVEALRDQVKDLQQQLQEAARDHSSVVALYRS--HLLYAIQ 1093
Cdd:pfam01576 423 ESERQRAELAEKLSKLQSELESVSSLLNeaEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQleDERNSLQ 502
|
330 340
....*....|....*....|...
gi 1988312894 1094 GQMDEDVQRILSQILQMQRLQAQ 1116
Cdd:pfam01576 503 EQLEEEEEAKRNVERQLSTLQAQ 525
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
787-944 |
5.04e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 5.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 787 LDEArASRL-----LAEEEARGLRAELAQreearleqsreLEVLREQLATARATGEQQRtaAAELGRARDAAEARVAELP 861
Cdd:COG0542 395 IDEA-AARVrmeidSKPEELDELERRLEQ-----------LEIEKEALKKEQDEASFER--LAELRDELAELEEELEALK 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 862 AACEEARQGLAELREASEALRQSVVPASEHRRLQEEALELRGRAASLEQEVV-----------ATGKEAARLRAElERER 930
Cdd:COG0542 461 ARWEAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVteediaevvsrWTGIPVGKLLEG-EREK 539
|
170
....*....|....*.
gi 1988312894 931 VcsVALSE--HERIVG 944
Cdd:COG0542 540 L--LNLEEelHERVIG 553
|
|
| PRK12472 |
PRK12472 |
hypothetical protein; Provisional |
778-880 |
5.36e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 40.62 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 778 RELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQLATA-------RATGEQQRT------AAA 844
Cdd:PRK12472 197 REAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAktdeakaRAEERQQKAaqqaaeAAT 276
|
90 100 110
....*....|....*....|....*....|....*.
gi 1988312894 845 ELGRARDAAEARVAELPAACEEARQGLAELREASEA 880
Cdd:PRK12472 277 QLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKA 312
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
772-1027 |
5.45e-03 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 40.73 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 772 DRDSRLRELEAASACLDEARAsRLLAEEEARGLRAELAQREEARLEQSRELEVLREQlatARATGEQQRTAAAELGRARD 851
Cdd:PRK07735 4 EKDLEDLKKEAARRAKEEARK-RLVAKHGAEISKLEEENREKEKALPKNDDMTIEEA---KRRAAAAAKAKAAALAKQKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 852 AA------EARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAE 925
Cdd:PRK07735 80 EGteevteEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 926 LERERVCSVALSEHERIVGTLQANVAQLEGQLEELGRRHEKTSAEVfqvqREALFMKSERHAAEAQLATAEQQLRGLRTE 1005
Cdd:PRK07735 160 TDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKA----KAAAAAKAKAAALAKQKASQGNGDSGDEDA 235
|
250 260
....*....|....*....|..
gi 1988312894 1006 AERARQAQSRAQEALDKAKEKD 1027
Cdd:PRK07735 236 KAKAIAAAKAKAAAAARAKTKG 257
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
798-1071 |
5.79e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.28 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 798 EEEARGLRAELAQREEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEARVAELPAACEEARQGLAELREA 877
Cdd:COG1340 14 EEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELREE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 878 sealrqsvvpASEHRRLQEEALELRGRAASLEQEVvatgkeaarlrAELERERVCSVALSEHERivgTLQANVAQLEGQL 957
Cdd:COG1340 94 ----------LDELRKELAELNKAGGSIDKLRKEI-----------ERLEWRQQTEVLSPEEEK---ELVEKIKELEKEL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 958 EELGRRHEK--------TSAEVFQVQREALFMKSERHAAEAQLATAE-QQLRGLRTE-AERARQAQSRAQEALDKAKEKD 1027
Cdd:COG1340 150 EKAKKALEKneklkelrAELKELRKEAEEIHKKIKELAEEAQELHEEmIELYKEADElRKEADELHKEIVEAQEKADELH 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1988312894 1028 KKITELSKEVFNLKEALKE----QPAALATPEVEALRDQVKDLQQQLQ 1071
Cdd:COG1340 230 EEIIELQKELRELRKELKKlrkkQRALKREKEKEELEEKAEEIFEKLK 277
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
917-1060 |
5.89e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 40.63 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 917 KEAARLRAELERERvcSVALSEHERivgtlQANVAQLEGQLEELGRRHEKTSAEVfQVQREALFMKSERHAAEAQLATAE 996
Cdd:COG2268 199 RDARIAEAEAERET--EIAIAQANR-----EAEEAELEQEREIETARIAEAEAEL-AKKKAEERREAETARAEAEAAYEI 270
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1988312894 997 QQLRGLRtEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATPEVEALR 1060
Cdd:COG2268 271 AEANAER-EVQRQLEIAEREREIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIR 333
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
300-489 |
6.22e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 6.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 300 RLRQERGRLLQKIRGLEQHKERRQQESPEASSLHILErQVQELQQLLVERQEEKESLGREVESLQSRLSLLENERENTSY 379
Cdd:COG3206 183 QLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQ-QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 380 DvTTLQDEEGELPDLPGAEVLLSRQLSPSAQEhLASLQEQVAVLTRQNQELMEKVQILENFEKDETQMEVEALAEVIpla 459
Cdd:COG3206 262 S-PVIQQLRAQLAELEAELAELSARYTPNHPD-VIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQL--- 336
|
170 180 190
....*....|....*....|....*....|
gi 1988312894 460 lyDSLRAEFDQLRRQHAEALQALRQQETRE 489
Cdd:COG3206 337 --AQLEARLAELPELEAELRRLEREVEVAR 364
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
873-1046 |
6.27e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 873 ELREASEALRQSVVpasehrRLQEEALELRGRAASLEQEVVATGKEAARLRAELER-ERV------------CSVALSEH 939
Cdd:PHA02562 224 ELVEEAKTIKAEIE------ELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQfQKVikmyekggvcptCTQQISEG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 940 ERIVGTLQANVAQLEGQLEELGRRHEKTSA---EVFQVQREALFMKSerhaaeaQLATAEQQLRGLRTEAERARQAQSRA 1016
Cdd:PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEimdEFNEQSKKLLELKN-------KISTNKQSLITLVDKAKKVKAAIEEL 370
|
170 180 190
....*....|....*....|....*....|.
gi 1988312894 1017 QEA-LDKAKEKDKKITELSKEVFNLKEALKE 1046
Cdd:PHA02562 371 QAEfVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| Ank |
pfam00023 |
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ... |
153-183 |
6.49e-03 |
|
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.
Pssm-ID: 459634 [Multi-domain] Cd Length: 34 Bit Score: 35.34 E-value: 6.49e-03
10 20 30
....*....|....*....|....*....|..
gi 1988312894 153 GATPLIIAAQMC-HTDLCRLLLQQGAAANDQD 183
Cdd:pfam00023 2 GNTPLHLAAGRRgNLEIVKLLLSKGADVNARD 33
|
|
| PRK12472 |
PRK12472 |
hypothetical protein; Provisional |
760-868 |
6.53e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 40.24 E-value: 6.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 760 RAALEQAREDLRDRDSrLRELEAASACLDE--ARASRLLA---EEEARglraelAQREEARLEQSRELEVLREQLATARA 834
Cdd:PRK12472 211 TAAAAAAREAAPLKAS-LRKLERAKARADAelKRADKALAaakTDEAK------ARAEERQQKAAQQAAEAATQLDTAKA 283
|
90 100 110
....*....|....*....|....*....|....
gi 1988312894 835 TGEQQRTAAAELGRARDAAEARVAELPAACEEAR 868
Cdd:PRK12472 284 DAEAKRAAAAATKEAAKAAAAKKAETAKAATDAK 317
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
757-1038 |
6.66e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.49 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 757 TQLRAALEQAREDLRDRDSRLRELEAASACLDEARASRLLAEEEARGLRAELAQREEARLEQSRELEVLREQL--ATARA 834
Cdd:pfam05557 69 EALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLdlLKAKA 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 835 TGEQQRTAAAELG-RARDAAEARVAELPAACEEARQGLAELREASEALRQSVVPASEHRRLQEEALELRgraaSLEQEVV 913
Cdd:pfam05557 149 SEAEQLRQNLEKQqSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLN----ENIENKL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 914 ATGKEAARLRAELER-----ERVCSVALsEHERIVGTLQA--NVAQLEGQleELgRRHEKTSAEVFQVQREALFMKSERH 986
Cdd:pfam05557 225 LLKEEVEDLKRKLEReekyrEEAATLEL-EKEKLEQELQSwvKLAQDTGL--NL-RSPEDLSRRIEQLQQREIVLKEENS 300
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1988312894 987 AAEAQLATAEQQLRGLRTEaerARQAQSRAQEALDKAKEKDKKITELSKEVF 1038
Cdd:pfam05557 301 SLTSSARQLEKARRELEQE---LAQYLKKIEDLNKKLKRHKALVRRLQRRVL 349
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
778-1044 |
6.77e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 778 RELEAASACLDEARASRLLAEEEARGLRAELAQREE---ARLEQSRELEVLREQLATARATGEQQRTAAAELGRArdaAE 854
Cdd:pfam01576 812 RELEEARASRDEILAQSKESEKKLKNLEAELLQLQEdlaASERARRQAQQERDELADEIASGASGKSALQDEKRR---LE 888
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 855 ARVAELPAACEEArQGLAELreASEALRQSVVPASEhrrLQEEALELRGRAASLEQEVVATGKEAARLRAELERERvcSV 934
Cdd:pfam01576 889 ARIAQLEEELEEE-QSNTEL--LNDRLRKSTLQVEQ---LTTELAAERSTSQKSESARQQLERQNKELKAKLQEME--GT 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 935 ALSEHERIVGTLQANVAQLEGQLEE----------LGRRHEKTSAEVF-QVQ---REALFMKSERHAAEAQLATAEQQLR 1000
Cdd:pfam01576 961 VKSKFKSSIAALEAKIAQLEEQLEQesrerqaankLVRRTEKKLKEVLlQVEderRHADQYKDQAEKGNSRMKQLKRQLE 1040
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1988312894 1001 GLRTEAERARQAQSRAQEALDKAKEKDKKiteLSKEVFNLKEAL 1044
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESNES---MNREVSTLKSKL 1081
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
876-1113 |
7.97e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.42 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 876 EASEALrQSVVPASEHRRLQEEalelrgRAASLEQEVVATGKEAARLRAELERERVCSVALSEHERIvGTLQANVAQLEG 955
Cdd:PRK10929 45 EIVEAL-QSALNWLEERKGSLE------RAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMST-DALEQEILQVSS 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 956 QLEELGRRHEKTSAEVFQVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQAQS---RAQEALDKAKEKDKKITE 1032
Cdd:PRK10929 117 QLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLtalQAESAALKALVDELELAQ 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 1033 LS----KEVFNLKEALKEQPAALATPEVEALRDQVKDLQQQLQEAARDHSSVVALYRSHLLYAIQGQMdeDVQRILSQIL 1108
Cdd:PRK10929 197 LSannrQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQF--KINRELSQAL 274
|
....*..
gi 1988312894 1109 --QMQRL 1113
Cdd:PRK10929 275 nqQAQRM 281
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
779-1052 |
9.43e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.01 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 779 ELEAASACLDEARASRLLAEEeaRGLRAELAQRE-----EARLEQS-RELEVLREQLATARATGEQQRTAAAELGRARDA 852
Cdd:pfam05701 188 ELIATKESLESAHAAHLEAEE--HRIGAALAREQdklnwEKELKQAeEELQRLNQQLLSAKDLKSKLETASALLLDLKAE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 853 AEARVAelpAACEEARQGLAELREASEALRQSVVPAsehrrlQEEALELRGRAASLEQEVVATGKEAARLRAELERERVC 932
Cdd:pfam05701 266 LAAYME---SKLKEEADGEGNEKKTSTSIQAALASA------KKELEEVKANIEKAKDEVNCLRVAAASLRSELEKEKAE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312894 933 SVALSEHErivGTLQANVAQLEgqlEELGRrhektsaevfqVQREALFMKSERHAAEAQLATAEQQLRGLRTEAERARQA 1012
Cdd:pfam05701 337 LASLRQRE---GMASIAVSSLE---AELNR-----------TKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEEAKSL 399
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1988312894 1013 QSRAQEALDKAKEK-DKKITELSKEVFNLKEALKEQPAALA 1052
Cdd:pfam05701 400 AQAAREELRKAKEEaEQAKAAASTVESRLEAVLKEIEAAKA 440
|
|
| Ank_5 |
pfam13857 |
Ankyrin repeats (many copies); |
146-193 |
9.44e-03 |
|
Ankyrin repeats (many copies);
Pssm-ID: 433530 [Multi-domain] Cd Length: 56 Bit Score: 35.40 E-value: 9.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1988312894 146 LNPQDRSGATPLIIAAQMCHTDLCRLLLQQGAAANDQDLQGRTALMLA 193
Cdd:pfam13857 9 LNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
|
|
| |
