|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
9-598 |
5.04e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.45 E-value: 5.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 9 ALNELLLRKEEEWRALQAHRTQLQEAALQDtrsQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 88
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEA---ELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 89 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAfQEHRLELERVHSDKNGEIDHHREQYENLK----------WTLER 158
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEeeleeaeaelAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 159 KLEELDGELALQRQELLLEFESKMR--KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNA 236
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEalRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 237 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTR 316
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 317 VLELQAHCETLE---AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAwdAQIAQLSKEMVSRDLQIQTLQEEEVKLKA 393
Cdd:COG1196 525 AVAVLIGVEAAYeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 394 QVArSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 473
Cdd:COG1196 603 LVA-SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 474 EVVLKAVTLERDQAVQALRmhglprpgAQMLLRQHEEEiskdfpsseiQRLREQNTSLRNAIAQMRKEMEALshqipppi 553
Cdd:COG1196 682 EELAERLAEEELELEEALL--------AEEEEERELAE----------AEEERLEEELEEEALEEQLEAERE-------- 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 2030424379 554 QTAAESTDANQPDPEAGGDAATPDYVL-ALEAEIRTLKHKFKTLEK 598
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLeELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
155-743 |
1.22e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 155 TLERKLEELDGELALqrqelllefeskmrkrehefrlqadnmsntalsreLKVKLLHKELEALKEAGAKAAESLQRAEAT 234
Cdd:COG1196 217 ELKEELKELEAELLL-----------------------------------LKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 235 NAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAvkgahVEQLQELQ 314
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL-----EEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 315 TRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 394
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 395 VARSQQDIERYKQQLSLAVERERslERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 474
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEE--EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 475 VVLKAVTLERDQAVQALRMHGLprPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQ 554
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLL--AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 555 TAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAG 634
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 635 QAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLLN-LLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQV 713
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAeEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590
....*....|....*....|....*....|
gi 2030424379 714 AELGKHLRIAQHGGAEPSGRKQPPASDAVA 743
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDL 762
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
16-545 |
2.50e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 2.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 16 RKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEdfvynlqvLEERDLELERYDAAFAQAREWEEARRAEVSEL 95
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--------LEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 96 KIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSDKNGEIDHHREQyenlkwtlerkLEELDGELALQRQELL 175
Cdd:COG1196 378 EEELEELAEELLEALRA--------AAELAAQLEELEEAEEALLERLERLEEE-----------LEELEEALAELEEEEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 176 LEFESKMRKREHEFRLQADNMSNTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM 255
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELL-----EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 256 SRARVKDLEDKLHSVQLTRKKEEETF---------KRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAhcET 326
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAAleaalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA--AA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 327 LEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYK 406
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 407 QQLSLAVERERSLERDQVQLGLDWQRRcDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQ 486
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEA-LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2030424379 487 AVQALRMHGLPRPGAQMLLRQHEEEIS-------------------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 545
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEalgpvnllaieeyeeleerYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
82-601 |
4.12e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 4.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 82 REWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEH----RLELERVHSDKNGEIDHHREQYENlkwtLE 157
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeLEELRLELEELELELEEAQAEEYE----LL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 158 RKLEELDGELALQRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 235
Cdd:COG1196 295 AELARLEQDIARLEERRreLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 236 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQT 315
Cdd:COG1196 375 AEAEEELEELAEELLEAL----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 316 RVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKS-------------AWDAQIAQLSKEMVSRDLQIQ 382
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLlleaeadyegfleGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 383 TLQEEEVKLKAQVA--------------RSQQDIERYKQQ-------LSLAVERERSLERDQVQLG-LDWQRRCDDIERD 440
Cdd:COG1196 530 IGVEAAYEAALEAAlaaalqnivveddeVAAAAIEYLKAAkagratfLPLDKIRARAALAAALARGaIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 441 QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS------- 513
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEelaerla 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 514 KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKF 593
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
....*...
gi 2030424379 594 KTLEKHLE 601
Cdd:COG1196 770 ERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
222-549 |
1.25e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 222 AKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRK--KEEETFKRKHEELDRLAREKDAVL 299
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 300 VAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRA--EWRQADTA-KEKDAAIDQLREDASTVKSAWD---AQIAQLSKE 373
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeELKALREAlDELRAELTLLNEEAANLRERLEsleRRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 374 MVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIE--RDQIQKSEALIQG 451
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRelESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 452 LSMAKSQVAAKLQETEQALQE-QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEIS----------------- 513
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlaaieeyeelk 999
|
330 340 350
....*....|....*....|....*....|....*...
gi 2030424379 514 --KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 549
Cdd:TIGR02168 1000 erYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
75-545 |
4.50e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 4.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 75 DAAFAQAREWEEARRAEVSE-----LKIEAAK----LRQAL----AREARKVEELQ--------QQQQLAFQEHRLELER 133
Cdd:PTZ00121 1151 AKRVEIARKAEDARKAEEARkaedaKKAEAARkaeeVRKAEelrkAEDARKAEAARkaeeerkaEEARKAEDAKKAEAVK 1230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 134 VHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESK----MRK----------REHEFRLQADNMSNT 199
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkadeLKKaeekkkadeaKKAEEKKKADEAKKK 1310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 200 ALSRELKVKLLHKELEALKEAGA---KAAESLQRAEATNAELERKlqsrAGELQDLEAMSRARVKDLEDKLHSVQLTRKK 276
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAakkKAEEAKKAAEAAKAEAEAA----ADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 277 EEEtfKRKHEELDRLARE--KDAVLVAVKGAHVEQLQELQTRVLELQahcETLEAQLRRAEWRQADTAKEKdaaIDQLRE 354
Cdd:PTZ00121 1387 AEE--KKKADEAKKKAEEdkKKADELKKAAAAKKKADEAKKKAEEKK---KADEAKKKAEEAKKADEAKKK---AEEAKK 1458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 355 DASTVKSAWDAQIAQLSKEMVSRDLQIQTLQE--EEVKLKAQVARSQQDIERYKQQLSLAVERERS--LERDQVQLGLDW 430
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 431 QRRCDDIER-DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQmlLRQHE 509
Cdd:PTZ00121 1539 AKKAEEKKKaDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--AKKAE 1616
|
490 500 510
....*....|....*....|....*....|....*.
gi 2030424379 510 EEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEAL 545
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
32-545 |
5.39e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.99 E-value: 5.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 32 QEAALQDTRSQLEEAQGKlrclqeDFVYNLQVLE----ERDLELERYDAAFAQAREWEEA----------RRAEVSELKI 97
Cdd:PRK02224 185 QRGSLDQLKAQIEEKEEK------DLHERLNGLEselaELDEEIERYEEQREQARETRDEadevleeheeRREELETLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 98 EAAKLRQALAREARKveelQQQQQLAFQEHRLELERVHSDKNGEIDhhreqyenlkwtlERKLEELDGELALQRQELLLE 177
Cdd:PRK02224 259 EIEDLRETIAETERE----REELAEEVRDLRERLEELEEERDDLLA-------------EAGLDDADAEAVEARREELED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 178 FESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM-- 255
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfg 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 256 -SRARVKDLEDKLHSVQLTR---KKEEETFKRKHEELDRLAREKDAVLVA---------VKGA-HVEQLQELQTRVLELQ 321
Cdd:PRK02224 402 dAPVDLGNAEDFLEELREERdelREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGSpHVETIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 322 AHCETLEAQLRRAEWR--QADTAKEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQ 399
Cdd:PRK02224 482 AELEDLEEEVEEVEERleRAEDLVEAEDRIERLEERREDL----EELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 400 QDIERYKQQLSLAVERERSLERDQVQLgldwqrrcdDIERDQIQKSEALIQGLSMAKSQVaAKLQETEQALQEQEVVLKA 479
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAEL---------KERIESLERIRTLLAAIADAEDEI-ERLREKREALAELNDERRE 627
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2030424379 480 VTLERDQAVQALR--MHGLPRPGAQMLLRQHEEEISKdfPSSEIQRLREQNTSLRNAIAQMRKEMEAL 545
Cdd:PRK02224 628 RLAEKRERKRELEaeFDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEIGAVENELEEL 693
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
274-814 |
1.30e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 274 RKKEEETFKRKHEELDRLAREKDavLVAVKGAHVEQLQ---ELQTRVLELQAHCETLEAQLRRAEWRQAdtaKEKDAAID 350
Cdd:COG1196 171 KERKEEAERKLEATEENLERLED--ILGELERQLEPLErqaEKAERYRELKEELKELEAELLLLKLREL---EAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 351 QLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDW 430
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 431 QRRCDDIERD---------QIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGA 501
Cdd:COG1196 326 AELEEELEELeeeleeleeELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 502 QMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIpppIQTAAESTDANQPDPEAGGDAAtpdyvlA 581
Cdd:COG1196 406 EEAEEALLERLERL--EEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEEALLELLAELLEEAA------L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 582 LEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALR 661
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 662 KLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPR--------------EVDQVHLEVLELRKQVAELGKHLRIAQHGG 727
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAalargaigaavdlvASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 728 AEPSGRKQPPASDAVALGREGLTkRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMG 807
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGS-AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
....*..
gi 2030424379 808 NRLRAEL 814
Cdd:COG1196 714 EERLEEE 720
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-528 |
2.10e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 15 LRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKlrclqedfvynlqvlEERDLELERYDAAFA----QAREWEEARRA 90
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAE---------------AVKKAEEAKKDAEEAkkaeEERNNEEIRKF 1257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 91 EVSELKIEAAKLRQALAREARKVEelqqqqqlafqehrlELERVHSDKNGEidhhreqyENLKWTLERKLEELDGELALQ 170
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKAD---------------ELKKAEEKKKAD--------EAKKAEEKKKADEAKKKAEEA 1314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 171 RQelllefESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQ 250
Cdd:PTZ00121 1315 KK------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 251 DLEAMSRARVKDLEDKLHSVQLTRKKEEetfKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETL--- 327
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAA---KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAkkk 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 328 --------EAQLRRAEWRQADTAKEK----DAAIDQLREDASTVKSAWDAQIAQLSKemvsrdlQIQTLQEEEVKLKAQV 395
Cdd:PTZ00121 1466 aeeakkadEAKKKAEEAKKADEAKKKaeeaKKKADEAKKAAEAKKKADEAKKAEEAK-------KADEAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 396 ARSQQDIeRYKQQLSLAVERERSLERDQV-QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQE 474
Cdd:PTZ00121 1539 AKKAEEK-KKADELKKAEELKKAEEKKKAeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 2030424379 475 VVLKAVTLERDQAVqalrmhglpRPGAQMLLRQHEEEISKdfpSSEIQRLREQN 528
Cdd:PTZ00121 1618 AKIKAEELKKAEEE---------KKKVEQLKKKEAEEKKK---AEELKKAEEEN 1659
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
32-322 |
3.33e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 32 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREAR 111
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 112 KVEELQQQQQLAFQEHRLELERVHsdkngEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRL 191
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLE-----EAEEELAEAEAEIEELEAQIEQLKEELKALREAL-----DELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 192 QADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE---RKLQSRAGELQDLEAMSRARVKDLEDKLH 268
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEeliEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2030424379 269 SVQLTRKKEEETFKRKHEELDRLaREKdavlvavKGAHVEQLQELQTRVLELQA 322
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEEL-REK-------LAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
181-509 |
1.33e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 181 KMRKREHEFRLQAdnmSNTALSRelkVKLLHKELEalkeagaKAAESLQR-AEATNAELERKLQSRAGELqdleAMSRAR 259
Cdd:TIGR02168 171 KERRKETERKLER---TRENLDR---LEDILNELE-------RQLKSLERqAEKAERYKELKAELRELEL----ALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 260 VKDLEDKLHSVQLTRKKEEetfkRKHEELDRLAREKDAVLVAVKGAHVE---QLQELQTRVLELQAHCETLEAQLRRAEW 336
Cdd:TIGR02168 234 LEELREELEELQEELKEAE----EELEELTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 337 RQA--------------------DTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVA 396
Cdd:TIGR02168 310 RLAnlerqleeleaqleelesklDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 397 RSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 476
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
330 340 350
....*....|....*....|....*....|...
gi 2030424379 477 LKAVTLERDQAVQALRMHGLPRPGAQMLLRQHE 509
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
94-410 |
1.98e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 94 ELKIEAAKLRQALAREARKVEELQQQQQLAFQEHrlelervhsdkngeidhhrEQYENLKWTLERKLEELDGELALQRQE 173
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKEL-------------------EELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 174 lLLEFESKMRKREHEFRLQADNMSNtalsrelkvklLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 253
Cdd:TIGR02168 735 -LARLEAEVEQLEERIAQLSKELTE-----------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 254 AMS---RARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLvavkgahvEQLQELQTRVLELQAHCETLEAQ 330
Cdd:TIGR02168 803 EALdelRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--------EDIESLAAEIEELEELIEELESE 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 331 LRRAEWRQAdtakEKDAAIDQLREDASTVksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLS 410
Cdd:TIGR02168 875 LEALLNERA----SLEEALALLRSELEEL----SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
33-418 |
2.30e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 2.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 33 EAALQDTrSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAevSELKIEAAKLRQALAREARK 112
Cdd:TIGR02169 173 EKALEEL-EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL--KEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 113 veelqqqqqlafQEHRLELERVHSDKNGEIdhhrEQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHefrlq 192
Cdd:TIGR02169 250 ------------EEELEKLTEEISELEKRL----EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER----- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 193 adnmsntalsrelKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQL 272
Cdd:TIGR02169 309 -------------SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT----EEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 273 TRKKEEETFKRKHEELDRLAREKDAvLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQL 352
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEK-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2030424379 353 REDastvksawDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERS 418
Cdd:TIGR02169 451 KKQ--------EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
226-514 |
1.30e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 226 ESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDRLAREKDAVLVAVKG- 304
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEELEEDLSSLEQEIENVKSe 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 305 -AHVE-QLQELQTRVLELQAHCETLEAQLRRAEWRQadtakekdaaIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQ-- 380
Cdd:TIGR02169 760 lKELEaRIEELEEDLHKLEEALNDLEARLSHSRIPE----------IQAELSKLEEEVSRIEARLREIEQKLNRLTLEke 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 381 -----IQTLQEEEVKLKAQVARSQQDIERYKQQLSlavERERSLERDQVQLgLDWQRRCDDIERDqIQKSEALIQGLSMA 455
Cdd:TIGR02169 830 ylekeIQELQEQRIDLKEQIKSIEKEIENLNGKKE---ELEEELEELEAAL-RDLESRLGDLKKE-RDELEAQLRELERK 904
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2030424379 456 KSQVAAKLQETEQALQEQEVVLKAVtLERDQAVQALRMHGLPRPGAQMLLRQHEEEISK 514
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
9-303 |
1.41e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 9 ALNELLLRKEEEWRALQAHRTQLQ------EAALQDTRSQLEEAQGKLRCLqedfvynLQVLEERDLELERYDAAFAQAR 82
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSkeltelEAEIEELEERLEEAEEELAEA-------EAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 83 EWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngeIDHHREQYENLKWTLERKLEE 162
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 163 LDGELALQRQELllefeskmrkreHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 242
Cdd:TIGR02168 878 LLNERASLEEAL------------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2030424379 243 QSRAG-ELQDLEAMSRARVKDLEDKLHSV-QLTRKKEE---------ETFKRKHEELDRLAREKDAVLVAVK 303
Cdd:TIGR02168 946 SEEYSlTLEEAEALENKIEDDEEEARRRLkRLENKIKElgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
3-419 |
2.47e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 3 PLGSEPALNELLLRK-EEEWRALQAHRTQLQEA--ALQDTRSQLEEAQGKLRCLQED-----FVYNLQVLEERDLELERY 74
Cdd:COG4717 61 PQGRKPELNLKELKElEEELKEAEEKEEEYAELqeELEELEEELEELEAELEELREElekleKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 75 DAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW 154
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 155 TLERKLEELDgelALQRQELLLEFESKMRKREHEFRLQA-----DNMSNTALSRELKVK-----------LLHKELEALK 218
Cdd:COG4717 221 ELEELEEELE---QLENELEAAALEERLKEARLLLLIAAallalLGLGGSLLSLILTIAgvlflvlgllaLLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 219 EAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETfkRKHEELDRLAREKDAV 298
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL--EEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 299 LVAVKGAHVEQLQELQTRV---LELQAHCETLEAQLRR-AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEM 374
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAeeyQELKEELEELEEQLEElLGELEELLEALDEEELEEELEELEEELEELEEELEELREEL 455
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2030424379 375 VSRDLQIQTLQEEEvklkaQVARSQQDIERYKQQLSLAVERERSL 419
Cdd:COG4717 456 AELEAELEQLEEDG-----ELAELLQELEELKAELRELAEEWAAL 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
156-421 |
3.00e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 156 LERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNtalsrelKVKLLHKELEALKEAGAKAAESLQRAEATN 235
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSEL-----RRIENRLDELSQELSDASR-------KIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 236 AELERKLQSRAGELQDLEamsrARVKDLEDKLHSVQLTRKKEEETFKR-KHEELDRLAREKDAVLVAVKGAHVEQLQELQ 314
Cdd:TIGR02169 747 SSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 315 TRVLE---LQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSA------WDAQIAQLSKEMVSRDLQIQTLQ 385
Cdd:TIGR02169 823 RLTLEkeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdLESRLGDLKKERDELEAQLRELE 902
|
250 260 270
....*....|....*....|....*....|....*.
gi 2030424379 386 EEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER 421
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
10-717 |
5.73e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 5.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 10 LNELLLRKEEEWRALQAHRTQLQEAA------LQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQARE 83
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELaeleekLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 84 WEEARRAEVSELKIEAaklrQALAREARKVEELQQQQQLAFQEHRL-ELERVHSDKNGEIDHHREQYEnlkwTLERKLEE 162
Cdd:TIGR02168 394 QIASLNNEIERLEARL----ERLEDRRERLQQEIEELLKKLEEAELkELQAELEELEEELEELQEELE----RLEEALEE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 163 LDGELALQRQELLLEFESKMRKREHEFRLQadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKL 242
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLE--RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 243 QSRageLQDLEamsrarVKDLEDKLHSVQLTrkKEEETFKRKHEELDRLAREKdavlvaVKGAHVEQLQElQTRVLELQA 322
Cdd:TIGR02168 544 GGR---LQAVV------VENLNAAKKAIAFL--KQNELGRVTFLPLDSIKGTE------IQGNDREILKN-IEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 323 HCETLEAQLRRA-EWRQADT--AKEKDAAIDQLRE----------DASTVKSAW---------DAQIAQLSKEMVSRDLQ 380
Cdd:TIGR02168 606 DLVKFDPKLRKAlSYLLGGVlvVDDLDNALELAKKlrpgyrivtlDGDLVRPGGvitggsaktNSSILERRREIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 381 IQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQ 458
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleERIAQLSKELTELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 459 VAAKLQETEQALQEQEVVLKAVTLERDQAVQALrmhglprpgaQMLLRQHEEEiskdfpSSEIQRLREQNTSLRNAIAQM 538
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEEL----------KALREALDEL------RAELTLLNEEAANLRERLESL 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 539 RKEMEALSHQIpppiQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQP 618
Cdd:TIGR02168 830 ERRIAATERRL----EDLEEQIEELSED------------IESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 619 SVRTSTettggSAQAGQAGGSVQAGQAGGSVQAGPVSSgLALRKLGDRVQLLNLLvTRLRQKVLREPLEPAALQRELPRE 698
Cdd:TIGR02168 894 SELEEL-----SEELRELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQ-ERLSEEYSLTLEEAEALENKIEDD 966
|
730
....*....|....*....
gi 2030424379 699 VDQVHLEVLELRKQVAELG 717
Cdd:TIGR02168 967 EEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-615 |
7.64e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 7.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 14 LLRKEEEWRALQAH----RTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEARR 89
Cdd:TIGR02168 215 YKELKAELRELELAllvlRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 90 AEVSELKIEAAKLrqalarEARKVEELQQQQQLAFQEHRLELERVHSDKngeidhHREQYENLKWTLERKLEELDGELAL 169
Cdd:TIGR02168 288 KELYALANEISRL------EQQKQILRERLANLERQLEELEAQLEELES------KLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 170 QRQEL--LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQS-RA 246
Cdd:TIGR02168 356 LEAELeeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 247 GELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREkdavlVAVKGAHVEQLQELQTRVLELQAHCET 326
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE-----LAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 327 LEAQLRR---------------AEWRQADTAKEKDAAIDQLREDASTVKSAWDAQiAQLSKEMVS-------RDLQIQTL 384
Cdd:TIGR02168 511 LLKNQSGlsgilgvlselisvdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL-KQNELGRVTflpldsiKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 385 QEEEVKLKAQVARSQQDIERYKQQLSLAVER--ERSLERDQVQLGLDWQRRCDDIER------DQI----------QKSE 446
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRPGYRivtldgDLVrpggvitggsAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 447 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhGLPRPGAQMLLRQHEEEISKDFPSSEIQRLRE 526
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE--QLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 527 QNTSLRNAIAQMRKEMEALSHQI----PPPIQTAAESTDANQPDPEAGGDAATPDYVL-ALEAEIRTLKHKFKTLEKHLE 601
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLeeaeEELAEAEAEIEELEAQIEQLKEELKALREALdELRAELTLLNEEAANLRERLE 827
|
650
....*....|....
gi 2030424379 602 DVLDPLKMSSPHAE 615
Cdd:TIGR02168 828 SLERRIAATERRLE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
226-601 |
1.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 226 ESLQRAEATNAELERklqsrageLQDLeamsrarVKDLEDKLHSVQLTRKKEEEtFKRKHEELDRLARekdAVLVAVKGA 305
Cdd:TIGR02168 176 ETERKLERTRENLDR--------LEDI-------LNELERQLKSLERQAEKAER-YKELKAELRELEL---ALLVLRLEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 306 HVEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtakekdaaidqlredastvksawdAQIAQLSKEMVSRDLQIQTLQ 385
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELE-----------------------------EKLEELRLEVSELEEEIEELQ 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 386 EEEVKLKAQVARSQQDIERYKQQLSLAverERSLERDQVQLGLDWQRRcdDIERDQIQKSEALIQGLSMAKSQVAAKLQE 465
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANL---ERQLEELEAQLEELESKL--DELAEELAELEEKLEELKEELESLEAELEE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 466 TEQALQEQEVVLKAVTLERDQAvqalrmhglprpgaqmllrqheeeiskdfpSSEIQRLREQNTSLRNAIAQMRKEMEAL 545
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETL------------------------------RSKVAQLELQIASLNNEIERLEARLERL 412
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2030424379 546 SHQipppIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 601
Cdd:TIGR02168 413 EDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
12-402 |
1.96e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 12 ELLLRKEEEWRALQAHRTQLQEAALQD-TRSQLEEAQGKLRclqedfvynlqvlEERDLELERYDAAfaQAREWEEARRA 90
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADeAKKKAEEAKKKAD-------------EAKKAAEAKKKAD--EAKKAEEAKKA 1524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 91 EVSELKIEAAKlrqalAREARKVEELQQQQQLAFQEhrlELERVHSDKNGEidhhreqyenlkwtlERKLEELDGELALQ 170
Cdd:PTZ00121 1525 DEAKKAEEAKK-----ADEAKKAEEKKKADELKKAE---ELKKAEEKKKAE---------------EAKKAEEDKNMALR 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 171 RQELLLEFEskmRKREHEFrlqadnMSNTALSRELKVKLLHKELEALKEagakaAESLQRAEATNAELERKLQSRAGELQ 250
Cdd:PTZ00121 1582 KAEEAKKAE---EARIEEV------MKLYEEEKKMKAEEAKKAEEAKIK-----AEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 251 DLEAMSRArvkDLEDKLHSVQLTRKKEEEtfKRKHEELDRLAREKDAVLVAVKGAHVE--QLQELQTRVLELQAHCEtle 328
Cdd:PTZ00121 1648 KAEELKKA---EEENKIKAAEEAKKAEED--KKKAEEAKKAEEDEKKAAEALKKEAEEakKAEELKKKEAEEKKKAE--- 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 329 aQLRRAEWRQADTAKE--KDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI---------QTLQEEEVKLKAQVAR 397
Cdd:PTZ00121 1720 -ELKKAEEENKIKAEEakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrkekeavieEELDEEDEKRRMEVDK 1798
|
....*
gi 2030424379 398 SQQDI 402
Cdd:PTZ00121 1799 KIKDI 1803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
9-601 |
2.50e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 9 ALNELLLRKEEEWRALQAHRTQLQE------AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAR 82
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEeieelqKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 83 EWEEARRAEVSELKIEAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLER---K 159
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAE--------LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERleaR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 160 LEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNTALSRELKVklLHKELEALKEAGAKAAESLQRAEATNAELE 239
Cdd:TIGR02168 409 LERLEDRRERLQQEI-----EELLKKLEEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALDAAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 240 RKLQSRAGELQDLEAMsRARVKDLEDKLHSVQLTRKKEEETFKR-----KHEELDRLAREK------DAVLV-------- 300
Cdd:TIGR02168 482 RELAQLQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVlseliSVDEGYEAAIEAalggrlQAVVVenlnaakk 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 301 ------------------------AVKGAHVEQLQElQTRVLELQAHCETLEAQLRRA-EWRQADT--AKEKDAAIDQLR 353
Cdd:TIGR02168 561 aiaflkqnelgrvtflpldsikgtEIQGNDREILKN-IEGFLGVAKDLVKFDPKLRKAlSYLLGGVlvVDDLDNALELAK 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 354 E----------DASTVKSAW---------DAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVE 414
Cdd:TIGR02168 640 KlrpgyrivtlDGDLVRPGGvitggsaktNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 415 RERSLERDQVQLGLDWQRRCDDIER--DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 492
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQleERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 493 MHGLPRPGAQMLLRQHEEEISK-----DFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI------PPPIQTAAESTD 561
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANlrerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeeleelIEELESELEALL 879
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 2030424379 562 ANQPDPEAGGDAATPDYVlALEAEIRTLKHKFKTLEKHLE 601
Cdd:TIGR02168 880 NERASLEEALALLRSELE-ELSEELRELESKRSELRRELE 918
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
70-489 |
2.63e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 70 ELERYDAAFAQAREW----EEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHH 145
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAkkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 146 REQYENLKwtleRKLEEL-DGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKvkllhKELEALKEAGAKA 224
Cdd:PTZ00121 1489 KKKAEEAK----KKADEAkKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK-----KADELKKAEELKK 1559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 225 AESLQRAEATNAELERKLQS--RAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAV 302
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 303 KGAHVEQLQELQTRVLELQAHCETLE-AQLRRAEWRQADTAK----EKDAAIDQLREDASTVKSAWDA---------QIA 368
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAKkaeeDEKKAAEALKKEAEEAKKAEELkkkeaeekkKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 369 QLSKEMVSRDLQIQTL--QEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQ----VQLGLDWQRRCDDIERDQI 442
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAkkEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeavIEEELDEEDEKRRMEVDKK 1799
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 2030424379 443 QK-----SEALIQGlSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQ 489
Cdd:PTZ00121 1800 IKdifdnFANIIEG-GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
257-549 |
2.98e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 257 RARVKDLEDKLHSVQLTRKKEEETFKRKHEE-LDRLAREKDAVLVAVkgahVEQLQELQTRVLELQAHCETLEAQLRRAE 335
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQNKIELLLQQHQDrIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 336 WRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQI-------QTLQEEEVKLKAQVARSQQDIERYKQQ 408
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQKLLADLHKREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 409 LSLAVERERSL-ERDQ-VQLGLDWQRRCDDIERDQIQKSEALIQGL--------------------SMAK-SQVAAKLQE 465
Cdd:pfam15921 393 LSLEKEQNKRLwDRDTgNSITIDHLRRELDDRNMEVQRLEALLKAMksecqgqmerqmaaiqgkneSLEKvSSLTAQLES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 466 TEQALQE--QEVVLKAVTLERDQAVQALRMHGLPRpgAQMLLRQHEEEISK-----DFPSSEIQRLREQNTSLRNAiaqm 538
Cdd:pfam15921 473 TKEMLRKvvEELTAKKMTLESSERTVSDLTASLQE--KERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNV---- 546
|
330
....*....|.
gi 2030424379 539 RKEMEALSHQI 549
Cdd:pfam15921 547 QTECEALKLQM 557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
9-472 |
3.48e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 9 ALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDfvynlqvLEERDLELERYDAAFAQAREWEEAR 88
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE-------LEERERRRARLEALLAALGLPLPAS 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 89 RAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSdkngEIDHHREQYENLKWTLERKLEELDGELA 168
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA----EIASLERRKSNIPARLLALRDALAEALG 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 169 LQRQEL-----LLEfeskMRKREHEFRLQADNMSNTA----LSRELKVKLLHKELEALKEAGA----KAAESLQRAEATN 235
Cdd:COG4913 455 LDEAELpfvgeLIE----VRPEEERWRGAIERVLGGFaltlLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 236 AE---LERKLQSRAGELQD-LEA-----MSRARVKDLED-KLHSVQLTR----KKEEETF-KRKHEELDRL------ARE 294
Cdd:COG4913 531 LDpdsLAGKLDFKPHPFRAwLEAelgrrFDYVCVDSPEElRRHPRAITRagqvKGNGTRHeKDDRRRIRSRyvlgfdNRA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 295 KDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAE------WRQADTAK------EKDAAIDQLREDASTVKSA 362
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDEIDVASaereiaELEAELERLDASSDDLAAL 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 363 wDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQvqlgLDWQRRCDDIERDQI 442
Cdd:COG4913 691 -EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL----LEERFAAALGDAVER 765
|
490 500 510
....*....|....*....|....*....|
gi 2030424379 443 QKSEALIQGLSMAKSQVAAKLQETEQALQE 472
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
239-473 |
5.55e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 5.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 239 ERKLQSRAGELQ----DLEAMsRARVKDLEDKLHsvQLTRKKEE-ETFKRKHEELDRLAREKDAVLVAvkgAHVEQLQEL 313
Cdd:COG4913 220 EPDTFEAADALVehfdDLERA-HEALEDAREQIE--LLEPIRELaERYAAARERLAELEYLRAALRLW---FAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 314 QTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKA 393
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 394 QVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERdQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQ 473
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRR-ELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
14-423 |
5.83e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 14 LLRKEEEWRALQAHRTQLqEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELE------RYDAAFAQAREWEEA 87
Cdd:COG4717 83 AEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElaelpeRLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 88 RRaEVSELKIEAAKLRQALAREARKVEELQQQqqlAFQEHRLELERVHSDkngeidhhREQYENLKWTLERKLEELDGEL 167
Cdd:COG4717 162 EE-ELEELEAELAELQEELEELLEQLSLATEE---ELQDLAEELEELQQR--------LAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 168 AlqrqelllEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERK----LQ 243
Cdd:COG4717 230 E--------QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLARekasLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 244 SRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLElQAH 323
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA-EAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 324 CETLEAQLRRAEwrQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEmvsrdlqiqTLQEEEVKLKAQVARSQQDIE 403
Cdd:COG4717 381 VEDEEELRAALE--QAEEYQELKEELEELEEQLEELLGELEELLEALDEE---------ELEEELEELEEELEELEEELE 449
|
410 420
....*....|....*....|
gi 2030424379 404 RYKQQLSLAVERERSLERDQ 423
Cdd:COG4717 450 ELREELAELEAELEQLEEDG 469
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
128-541 |
5.86e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 5.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 128 RLELERVHSDKNGEIDHHREQYENLKWT--------LERKLEELDGEL----------ALQRQELLLEFESKMRKREHEF 189
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEEKdlherlngLESELAELDEEIeryeeqreqaRETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 190 RLQAD------NMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELER------KLQSRAGELQDLEAMSR 257
Cdd:PRK02224 255 TLEAEiedlreTIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAvearreELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 258 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQLRRAEWR 337
Cdd:PRK02224 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR-EEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 338 QADTAKEKDAAIDQLREDASTVKSAWD--AQIAQLSKE------------------MVSRDLQIQTLQEEEVKLKAQVAR 397
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARErvEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEE 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 398 SQQDIERYKQQLSLAVERERSLERDQvqlglDWQRRCDDiERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQE----- 472
Cdd:PRK02224 494 VEERLERAEDLVEAEDRIERLEERRE-----DLEELIAE-RRETIEEKRERAEELRERAAELEAEAEEKREAAAEaeeea 567
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2030424379 473 QEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEiskdfpssEIQRLREQntslRNAIAQMRKE 541
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAED--------EIERLREK----REALAELNDE 624
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
305-544 |
6.25e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 305 AHVEQLQELQTRVLELQAHCETLEaQLRrAEWRQADTAKEKDAAIDQLREDAStvksAWDAQ--IAQLSKEMVSRDLQIQ 382
Cdd:COG4913 232 EHFDDLERAHEALEDAREQIELLE-PIR-ELAERYAAARERLAELEYLRAALR----LWFAQrrLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 383 TLQEEEVKLKAQVARSQQDIERYKQQL-SLAVERERSLERDQVQLgldwQRRCDDIERDQiQKSEALIQGLSMAKSQVAA 461
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERL----ERELEERERRR-ARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 462 KLQETEQALQEQevvLKAVTLERDQAVQALRMHGlprpGAQMLLRQHEEEISKdfpssEIQRLREQNTSLRNAIAQMRKE 541
Cdd:COG4913 381 EFAALRAEAAAL---LEALEEELEALEEALAEAE----AALRDLRRELRELEA-----EIASLERRKSNIPARLLALRDA 448
|
...
gi 2030424379 542 MEA 544
Cdd:COG4913 449 LAE 451
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
154-371 |
6.30e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 154 WTLERKLEELDGELALQRQELL----LEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAgakaaesLQ 229
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAeaeeRLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE-------LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 230 RAEATNAELERkLQSRAGELqdleamsRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAvlvAVKGAHVEQ 309
Cdd:COG4913 679 RLDASSDDLAA-LEEQLEEL-------EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA---AEDLARLEL 747
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2030424379 310 LQELQTRVLELQAhcETLEAQLRRA-EWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLS 371
Cdd:COG4913 748 RALLEERFAAALG--DAVERELRENlEERIDALRARLNRAEEELERAMRAFNREWPAETADLD 808
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
18-329 |
8.96e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 8.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 18 EEEWRALQAHRTQLQEAaLQDTRSQLEEAQGKLRCLQEDFVYNLQVLEE-------RDLELERYDAAFAQAREWEEARRA 90
Cdd:PRK02224 404 PVDLGNAEDFLEELREE-RDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 91 EVSELKIEAAKLRQALAREARKVEELQQQQQLafQEHRLELERVHSDKNGEIDHHREQYENLKwtlERKlEELDGELALQ 170
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERL--EERREDLEELIAERRETIEEKRERAEELR---ERA-AELEAEAEEK 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 171 RqelllefeskmrKREHEFRLQADNMSNTALSRELKVKLLHKELEALkeagAKAAESLQRAEATNAELERkLQSRAGELQ 250
Cdd:PRK02224 557 R------------EAAAEAEEEAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIER-LREKREALA 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 251 DLEAMSRARVKDL------------EDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAH--VEQLQELQTR 316
Cdd:PRK02224 620 ELNDERRERLAEKrerkreleaefdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEneLEELEELRER 699
|
330
....*....|...
gi 2030424379 317 VLELQAHCETLEA 329
Cdd:PRK02224 700 REALENRVEALEA 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
9-345 |
1.06e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 9 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 88
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELS-QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 89 RAEVSELKIEAAKLRQAL----AREARKVEELQQQQQLAFQEHRLELERVHSDKNGEID--HHREQY-ENLKWTLERKLE 161
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNrlTLEKEYlEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 162 ELDGELAL--QRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELE 239
Cdd:TIGR02169 844 DLKEQIKSieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 240 RKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLtrkkeEETFKRKHEELDRLArekdavlvAVKGAHVEQLQELQTRVLE 319
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEEELSLEDV-----QAELQRVEEEIRALE--------PVNMLAIQEYEEVLKRLDE 990
|
330 340
....*....|....*....|....*.
gi 2030424379 320 LQAHCETLEAQLRRAEWRQADTAKEK 345
Cdd:TIGR02169 991 LKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
55-339 |
1.26e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 55 EDFVYNlQVLEERDLElERYDAAFAQAREWEEARRAEVSELK--------IEAAKLRQALAREARKVEELQQQQQLAFQE 126
Cdd:COG4913 210 DDFVRE-YMLEEPDTF-EAADALVEHFDDLERAHEALEDAREqiellepiRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 127 HRLELERvhsdknGEIDHHREQYEnlkwTLERKLEELDGELALQRQELLlefeskmrkrehEFRLQADNMSNTALSR-EL 205
Cdd:COG4913 288 RRLELLE------AELEELRAELA----RLEAELERLEARLDALREELD------------ELEAQIRGNGGDRLEQlER 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 206 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKH 285
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2030424379 286 EELDRLAREKDAVlvavkGAHVEQL-----QELQTRVLELQAHCETLEAQLRRAEWRQA 339
Cdd:COG4913 426 AEIASLERRKSNI-----PARLLALrdalaEALGLDEAELPFVGELIEVRPEEERWRGA 479
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
34-604 |
1.77e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 34 AALQDTRSQLEEAQGKLRCLQEDFVyNLQVLEERdlELERYDAAFAQAREWEEARRAEVSElKIEAAKLRQALAREArkv 113
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYK-SDETLIAS--RQEERQETSAELNQLLRTLDDQWKE-KRDELNGELSAADAA--- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 114 eelqqqqqlaFQEHRLELERVHSDKNGEIDHHREQY----ENLKwTLERKLEELDGELALQ---RQELLLEFESKMRKRE 186
Cdd:pfam12128 317 ----------VAKDRSELEALEDQHGAFLDADIETAaadqEQLP-SWQSELENLEERLKALtgkHQDVTAKYNRRRSKIK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 187 HEF-RLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLED 265
Cdd:pfam12128 386 EQNnRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 266 KLHSVQLTRKKEEETFKRKHEELdRLAREKdAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLrraewrqadtakek 345
Cdd:pfam12128 466 LENFDERIERAREEQEAANAEVE-RLQSEL-RQARKRRDQASEALRQASRRLEERQSALDELELQL-------------- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 346 DAAIDQLREDASTVKSAWDAQIAQL-SKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQV 424
Cdd:pfam12128 530 FPQAGTLLHFLRKEAPDWEQSIGKViSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKA 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 425 QLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQAL--------QEQEVVLKAVTLERDQAVQALR---- 492
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLrrlfdekqSEKDKKNKALAERKDSANERLNslea 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 493 -MHGLPRPGAQMLlrQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAEstdanQPDPEAGG 571
Cdd:pfam12128 690 qLKQLDKKHQAWL--EEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALET-----WYKRDLAS 762
|
570 580 590
....*....|....*....|....*....|...
gi 2030424379 572 DAATPDYVLALEAEIRTLKHKFKTLEKHLEDVL 604
Cdd:pfam12128 763 LGVDPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
18-563 |
2.12e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 18 EEEWRALQAHRTQLQEAalqdtRSQLEEAQGKLRCLQEdfvynlqvLEERDlelERYDAAFAQAREWEEARRAevseLKI 97
Cdd:COG4913 224 FEAADALVEHFDDLERA-----HEALEDAREQIELLEP--------IRELA---ERYAAARERLAELEYLRAA----LRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 98 EAAKLRQALAREARkveELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW----TLERKLEELDGELAlQRQE 173
Cdd:COG4913 284 WFAQRRLELLEAEL---EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdrleQLEREIERLERELE-ERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 174 LLLEFESKMRKREHEFRLQADNMsnTALSRELKvkllhKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLE 253
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEF--AALRAEAA-----ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 254 A--------MSRAR----------------------VKDLEDK--------LHSVQLTRKKEEETFKRKHEELDRLAREK 295
Cdd:COG4913 433 RrksniparLLALRdalaealgldeaelpfvgelieVRPEEERwrgaiervLGGFALTLLVPPEHYAAALRWVNRLHLRG 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 296 DAVLVAVKGAHVEQLQE---------------------LQTRVLELQAH--CETLEaQLRRAEW--------RQADTAKE 344
Cdd:COG4913 513 RLVYERVRTGLPDPERPrldpdslagkldfkphpfrawLEAELGRRFDYvcVDSPE-ELRRHPRaitragqvKGNGTRHE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 345 KDaaidqlreDASTVKSAWdaQIAQLSKEmvsrdlQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLER--D 422
Cdd:COG4913 592 KD--------DRRRIRSRY--VLGFDNRA------KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 423 QVQLGLDW---QRRCDDIE--RDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQAL-----R 492
Cdd:COG4913 656 YSWDEIDVasaEREIAELEaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdelqdR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 493 MHGLPRPG------------AQMLLRQHEEEISKDFpSSEIQRLREQntsLRNAIAQMRKEMEALSHQIPPPIQTAAEST 560
Cdd:COG4913 736 LEAAEDLArlelralleerfAAALGDAVERELRENL-EERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADL 811
|
...
gi 2030424379 561 DAN 563
Cdd:COG4913 812 ESL 814
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
156-361 |
2.21e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 156 LERKLEELDGELALQRQELLlEFESKMRkrehEFRLQadnmsNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATN 235
Cdd:COG3206 173 ARKALEFLEEQLPELRKELE-EAEAALE----EFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 236 AELERKLQSRAGELQDLeaMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQT 315
Cdd:COG3206 243 AALRAQLGSGPDALPEL--LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2030424379 316 RVLELQAHCETLEAQLRRAEwRQADTAKEKDAAIDQLREDASTVKS 361
Cdd:COG3206 321 ELEALQAREASLQAQLAQLE-ARLAELPELEAELRRLEREVEVARE 365
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
32-394 |
2.62e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 32 QEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVleeRDLELERYDAAFAQAREWEEARRAEVSELK--IEAAKLRQA-LAR 108
Cdd:pfam05483 416 EDEKLLDEKKQFEKIAEELKGKEQELIFLLQA---REKEIHDLEIQLTAIKTSEEHYLKEVEDLKteLEKEKLKNIeLTA 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 109 EARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKwTLERKLEELDGELALQRQELLL---EFESKMRKR 185
Cdd:pfam05483 493 HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQkgdEVKCKLDKS 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 186 EHEFRlqadNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLED 265
Cdd:pfam05483 572 EENAR----SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEI----KVNKLEL 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 266 KLHSvqlTRKKEEETFK--RKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRV-LELQAHCETLEAQLRRAEWRQADTA 342
Cdd:pfam05483 644 ELAS---AKQKFEEIIDnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIdKRCQHKIAEMVALMEKHKHQYDKII 720
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2030424379 343 KEKDAAIDQLR---EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQ 394
Cdd:pfam05483 721 EERDSELGLYKnkeQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKME 775
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
136-617 |
3.92e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 136 SDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELllefeSKMRKREHEFRLQADNMSNTALSRELKVKLLHKELE 215
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL-----TEARTERDQFSQESGNLDDQLQKLLADLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 216 ALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLhsvqltrKKEEETFKRKHEELDRlarek 295
Cdd:pfam15921 395 LEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM-------ERQMAAIQGKNESLEK----- 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 296 davlVAVKGAHVEQLQELQTRVLE-LQAHCETLEAQLRRAEWRQAdTAKEKDAAIDQLREDASTVKSAWDAQIAQLsKEM 374
Cdd:pfam15921 463 ----VSSLTAQLESTKEMLRKVVEeLTAKKMTLESSERTVSDLTA-SLQEKERAIEATNAEITKLRSRVDLKLQEL-QHL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 375 VSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQL----SLAVERERSLERDQVQLGldwqrrcdDIERdQIQKSEALIQ 450
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIenmtQLVGQHGRTAGAMQVEKA--------QLEK-EINDRRLELQ 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 451 GLSMAKSQVAAKLQETEQALQEQEvvlkavtLERDQAVQAlrmhglprpGAQMLlrqheeeiskdfpsSEIQRLREQNTS 530
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLE-------LEKVKLVNA---------GSERL--------------RAVKDIKQERDQ 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 531 LRNAIAQMRKEMEALSHqipppiqtaaestdanqpdpeaggdaatpdyvlaleaEIRTLKHKFKTLEKHLEDVLDPLKMS 610
Cdd:pfam15921 658 LLNEVKTSRNELNSLSE-------------------------------------DYEVLKRNFRNKSEEMETTTNKLKMQ 700
|
....*..
gi 2030424379 611 SPHAESQ 617
Cdd:pfam15921 701 LKSAQSE 707
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
130-549 |
7.70e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 7.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 130 ELERVHSDKNGEIDHHREQYENLKWT------LERKLEELDGELAlQRQELLLEFESKMRKREHEFRLQADNMsntalsR 203
Cdd:PRK03918 211 EISSELPELREELEKLEKEVKELEELkeeieeLEKELESLEGSKR-KLEEKIRELEERIEELKKEIEELEEKV------K 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 204 ELK-VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRaRVKDLEDKLhsVQLTRKKEE-ETF 281
Cdd:PRK03918 284 ELKeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE-RLEELKKKL--KELEKRLEElEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 282 KRKHEELDRLAREKDAVLVAVKGAHVEQ----LQELQTRVLELQAHCETLEAQLRRAEWRqadtAKEKDAAIDQLR---- 353
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLTPEKlekeLEELEKAKEEIEEEISKITARIGELKKE----IKELKKAIEELKkakg 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 354 -----------EDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYK---------------- 406
Cdd:PRK03918 437 kcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaeqlkeleeklkkyn 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 407 -QQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQ--IQKSEALIQGLSMAKSQVA------------------AKLQE 465
Cdd:PRK03918 517 lEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelKKKLAELEKKLDELEEELAellkeleelgfesveeleERLKE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 466 TEQ----------ALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLlRQHEEEISKDFPSSEIQRLREQNTSLRNAI 535
Cdd:PRK03918 597 LEPfyneylelkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL-RKELEELEKKYSEEEYEELREEYLELSREL 675
|
490
....*....|....
gi 2030424379 536 AQMRKEMEALSHQI 549
Cdd:PRK03918 676 AGLRAELEELEKRR 689
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
141-549 |
8.17e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 8.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 141 EIDHHREQYENLKwTLERKLEELDGELALQRQELLlEFESKMRKREHEFRLQADNMSNTALSRELKvkLLHKELEALKEA 220
Cdd:COG4717 79 ELKEAEEKEEEYA-ELQEELEELEEELEELEAELE-ELREELEKLEKLLQLLPLYQELEALEAELA--ELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 221 GAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAvlv 300
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ--- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 301 avkgahveqlqelqtrvLELQAHCETLEAQLRRAEWRQADTAK--EKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRD 378
Cdd:COG4717 232 -----------------LENELEAAALEERLKEARLLLLIAAAllALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 379 LQIQTLQEEEVKLKAQVARS---QQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERdqiQKSEALIQGLSMA 455
Cdd:COG4717 295 REKASLGKEAEELQALPALEeleEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE---LEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 456 KSQVAAKLQET--EQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKdfpssEIQRLREQNTSLRN 533
Cdd:COG4717 372 IAALLAEAGVEdeEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE-----ELEELEEELEELEE 446
|
410
....*....|....*.
gi 2030424379 534 AIAQMRKEMEALSHQI 549
Cdd:COG4717 447 ELEELREELAELEAEL 462
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
197-430 |
9.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 9.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 197 SNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAmsraRVKDLEDKLHSVQLTRKK 276
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----ELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 277 EEETFKRKHEELDRLAR------EKDAVLVAVKGAHVEQ----LQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKd 346
Cdd:COG4942 95 LRAELEAQKEELAELLRalyrlgRQPPLALLLSPEDFLDavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAER- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 347 AAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 426
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
....
gi 2030424379 427 GLDW 430
Cdd:COG4942 254 KLPW 257
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
18-428 |
1.16e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 18 EEEWRALQAHRTQLQEAAlqDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKI 97
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 98 EA-AKLR--QALAREARKVEELQQQQQLafqehrLELERVHSDKNGEIdhHREQYENLKWTLERKLEELDgelALQRQEL 174
Cdd:pfam15921 525 RVdLKLQelQHLKNEGDHLRNVQTECEA------LKLQMAEKDKVIEI--LRQQIENMTQLVGQHGRTAG---AMQVEKA 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 175 LLEFESKMRKRE-HEFRLQADNmsNTALSRELKVKLLHKELEALK--EAGAKAAESLQRAEATNAELERKLQSRAGELQD 251
Cdd:pfam15921 594 QLEKEINDRRLElQEFKILKDK--KDAKIRELEARVSDLELEKVKlvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNS 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 252 LEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRlAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQL 331
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ-TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKI 750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 332 RRAEWRQADTAKEKDAaidqLREDastvKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSL 411
Cdd:pfam15921 751 QFLEEAMTNANKEKHF----LKEE----KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
410
....*....|....*..
gi 2030424379 412 AVERERSLERDQVQLGL 428
Cdd:pfam15921 823 CQDIIQRQEQESVRLKL 839
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
18-425 |
1.26e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 18 EEEWRALQAHRTQLQEAALQdtRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREweearraEVSELKI 97
Cdd:COG3096 326 EQDYQAASDHLNLVQTALRQ--QEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEE-------EVDSLKS 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 98 EAAKLRQALAREARKveelqqqqQLAFQEHRLELERVHSdKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLe 177
Cdd:COG3096 397 QLADYQQALDVQQTR--------AIQYQQAVQALEKARA-LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSV- 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 178 feSKMRKREHEFRLQAdnmsntalsrelkVKLLHKELEAlKEAGAKAAESLQRAeatnaeleRKLQSRAGELQDLeamsR 257
Cdd:COG3096 467 --ADAARRQFEKAYEL-------------VCKIAGEVER-SQAWQTARELLRRY--------RSQQALAQRLQQL----R 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 258 ARVKDLEDKLHSVQLTRKKEEETFKRKHEELDrlarekdavlvavkgaHVEQLQELQtrvLELQAHCETLEAQLRRAEWR 337
Cdd:COG3096 519 AQLAELEQRLRQQQNAERLLEEFCQRIGQQLD----------------AAEELEELL---AELEAQLEELEEQAAEAVEQ 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 338 QADTAKEKDaaidqlredastvksawdaQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVAR---SQQDIERYKQQLsLAVE 414
Cdd:COG3096 580 RSELRQQLE-------------------QLRARIKELAARAPAWLAAQDALERLREQSGEalaDSQEVTAAMQQL-LERE 639
|
410
....*....|.
gi 2030424379 415 RERSLERDQVQ 425
Cdd:COG3096 640 REATVERDELA 650
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
34-601 |
1.26e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 34 AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDleleRYDAAFAQAREWEEARRAEVSELkiEAAKLRQALAREARKV 113
Cdd:TIGR00618 222 QVLEKELKHLREALQQTQQSHAYLTQKREAQEEQL----KKQQLLKQLRARIEELRAQEAVL--EETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 114 EELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELDGELALQRQELLL------------EFESK 181
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMR-SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIrdahevatsireISCQQ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 182 MRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAM------ 255
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITctaqce 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 256 ---------SRARVKDLEDKLHSVQLTRKKEEET------FKRKHEELDRLAREK------DAVLVAVKGAHVEQLQELQ 314
Cdd:TIGR00618 455 klekihlqeSAQSLKEREQQLQTKEQIHLQETRKkavvlaRLLELQEEPCPLCGScihpnpARQDIDNPGPLTRRMQRGE 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 315 TRVLELQAHCETLEAQLrRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKL--- 391
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQL-TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLace 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 392 ------KAQVARSQQDIERYKQQLSLAVERER-SLERDQVQLGLDWQR----RCDDIERDQIQKSEALIQGLSMAKSQVA 460
Cdd:TIGR00618 614 qhallrKLQPEQDLQDVRLHLQQCSQELALKLtALHALQLTLTQERVRehalSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 461 AKLQETEQ---ALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSS-EIQRLREQNTSLRNAIA 536
Cdd:TIGR00618 694 YWKEMLAQcqtLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlKARTEAHFNNNEEVTAA 773
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2030424379 537 QMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLE 601
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
206-405 |
1.26e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 206 KVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQD-LEAMsrarVKDLED------KLHSVQLTRKKEE 278
Cdd:PHA02562 196 QIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDeLLNL----VMDIEDpsaalnKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 279 ETFKRKHEELdrlarEKDAVLVAVKGA---HVEQLQELQTRVLELQAHCETL-----EAQLRRAEWRQAD-TAKEKDAAI 349
Cdd:PHA02562 272 EQFQKVIKMY-----EKGGVCPTCTQQiseGPDRITKIKDKLKELQHSLEKLdtaidELEEIMDEFNEQSkKLLELKNKI 346
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2030424379 350 DQLREDAST-VKSAWDAQ--IAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERY 405
Cdd:PHA02562 347 STNKQSLITlVDKAKKVKaaIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
193-550 |
1.41e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 193 ADNMSNTALSRELKVKLLHKElEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSrarvkdleDKLHSVQl 272
Cdd:COG3096 271 ADYMRHANERRELSERALELR-RELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAS--------DHLNLVQ- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 273 TRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHvEQLQELQTRVLELQAHCETLEAQL-----------RRA-EWRQAD 340
Cdd:COG3096 341 TALRQQEKIERYQEDLEELTERLEEQEEVVEEAA-EQLAEAEARLEAAEEEVDSLKSQLadyqqaldvqqTRAiQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 341 TAKEKdaAIDQLREDASTVKSAWDAQIAQLSKEmvsrDLQIQTLQEEEVKLK-AQVARSQQDiERYK--QQLSLAVERER 417
Cdd:COG3096 420 QALEK--ARALCGLPDLTPENAEDYLAAFRAKE----QQATEEVLELEQKLSvADAARRQFE-KAYElvCKIAGEVERSQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 418 SLERDQvQLGLDWqrrcddieRDQiqksEALIQGLSmaksQVAAKLQETEQALQEQEVVlkavtleRDQAVQALRMHGLP 497
Cdd:COG3096 493 AWQTAR-ELLRRY--------RSQ----QALAQRLQ----QLRAQLAELEQRLRQQQNA-------ERLLEEFCQRIGQQ 548
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2030424379 498 RPGAQMLLRQHEE-EISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIP 550
Cdd:COG3096 549 LDAAEELEELLAElEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAP 602
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
210-377 |
1.65e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 210 LHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLHSVQLTR-----KKEEETFKRK 284
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV----EARIKKYEEQLGNVRNNKeyealQKEIESLKRR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 285 HEELDRLAREKDavlvavkgahvEQLQELQTRVLELQAHCETLEAQLRRAEwrqadtaKEKDAAIDQLREDASTVKSAWD 364
Cdd:COG1579 105 ISDLEDEILELM-----------ERIEELEEELAELEAELAELEAELEEKK-------AELDEELAELEAELEELEAERE 166
|
170
....*....|...
gi 2030424379 365 AQIAQLSKEMVSR 377
Cdd:COG1579 167 ELAAKIPPELLAL 179
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
17-549 |
2.63e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 17 KEEEWRALQAHRTQLQE------AALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRA 90
Cdd:TIGR02169 313 KERELEDAEERLAKLEAeidkllAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 91 EVSELKIEaaklRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELdgelalq 170
Cdd:TIGR02169 393 KLEKLKRE----INELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEWKLEQL------- 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 171 rQELLLEFESKMRKREHEFRlqadnmsntALSRELKVklLHKELEALkEAGAKAAESLQRAEATNAE-LERKLQSRAGEL 249
Cdd:TIGR02169 461 -AADLSKYEQELYDLKEEYD---------RVEKELSK--LQRELAEA-EAQARASEERVRGGRAVEEvLKASIQGVHGTV 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 250 QDL-----------EAMSRAR-----VKDLEDKLHSVQL--TRKKEEETF------KRKHEELDRLArEKDAVLVAVKGA 305
Cdd:TIGR02169 528 AQLgsvgeryataiEVAAGNRlnnvvVEDDAVAKEAIELlkRRKAGRATFlplnkmRDERRDLSILS-EDGVIGFAVDLV 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 306 HVEQ---------------LQELQT-RVLELQAHCETLEAQLRraewrqadtakEKDAAI---DQLREDASTVKSAWDAQ 366
Cdd:TIGR02169 607 EFDPkyepafkyvfgdtlvVEDIEAaRRLMGKYRMVTLEGELF-----------EKSGAMtggSRAPRGGILFSRSEPAE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 367 IAQLSKEmvsrdlqIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSE 446
Cdd:TIGR02169 676 LQRLRER-------LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK-----LKERLEELE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 447 ALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMllRQHEEEIS------------- 513
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL--SKLEEEVSriearlreieqkl 821
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 2030424379 514 ------KDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQI 549
Cdd:TIGR02169 822 nrltleKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
70-602 |
3.15e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 70 ELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERV--HSDKNGEIDHHRE 147
Cdd:pfam05483 100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCarSAEKTKKYEYERE 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 148 QYENLKWTLERKLEELdgelalqrqelLLEFEskmrkrehEFRLQADNmsnTALSRELKVKLLHKELEALKEAGAKAAES 227
Cdd:pfam05483 180 ETRQVYMDLNNNIEKM-----------ILAFE--------ELRVQAEN---ARLEMHFKLKEDHEKIQHLEEEYKKEIND 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 228 LQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKlhsvqltRKKEEETFKRKHEELDRLAREKDAVLVAVK---- 303
Cdd:pfam05483 238 KEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEK-------TKLQDENLKELIEKKDHLTKELEDIKMSLQrsms 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 304 --GAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLskEMVSRDLQI 381
Cdd:pfam05483 311 tqKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL--KIITMELQK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 382 QTLQEEEV------------KLKAQVARSQQDIERYKQQLSLAVErersLERDQVQLGLDWQRRCDDIERDQIQksealI 449
Cdd:pfam05483 389 KSSELEEMtkfknnkeveleELKKILAEDEKLLDEKKQFEKIAEE----LKGKEQELIFLLQAREKEIHDLEIQ-----L 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 450 QGLSMAKSQVAAKLQETEQALQEQEvvLKAVTLERDQAVQALRMHGLPRPGAQMLL--RQHEEEISKDFPSSE-----IQ 522
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDLKTELEKEK--LKNIELTAHCDKLLLENKELTQEASDMTLelKKHQEDIINCKKQEErmlkqIE 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 523 RLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDpeaggdaatpdyVLALEAEIRTLKHKFKTLEKHLED 602
Cdd:pfam05483 538 NLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYE------------VLKKEKQMKILENKCNNLKKQIEN 605
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
329-551 |
3.61e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 329 AQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQ 408
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 409 L--------SLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKS-----EALIQGLSMAKSQVAAKLQETEQALQEQEV 475
Cdd:COG4942 99 LeaqkeelaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYlaparREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2030424379 476 VLKAVTLERDQAVQALRMHglprpgaQMLLRQHEEEISKDfpSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPP 551
Cdd:COG4942 179 LLAELEEERAALEALKAER-------QKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
238-426 |
1.38e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 238 LERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQltrkKEEETFKRKHEELDrLAREKDAVLVAVKGAhVEQLQELQTRV 317
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE----AALEEFRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 318 LELQAHCETLEAQLRRAEWRQADTAKekDAAIDQLREDASTVKsawdAQIAQLSK-------EMVSRDLQIQTLQEE--- 387
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELE----AELAELSArytpnhpDVIALRAQIAALRAQlqq 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2030424379 388 -----EVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQL 426
Cdd:COG3206 310 eaqriLASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
10-492 |
2.26e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 10 LNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVY-----NLQVLEERDLELERYDAAFAQAREW 84
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLlakeeEELKSELLKLERRKVDDEEKLKESE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 85 EEARRAEVSELKIEAAKLRQ----ALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKW------ 154
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELekelKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEeelelk 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 155 -------TLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLH---KELEALKEAGAKA 224
Cdd:pfam02463 401 seeekeaQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDElelKKSEDLLKETQLV 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 225 AESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKrkhEELDRLAREKDAVLVAVKG 304
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV---ENYKVAISTAVIVEVSATA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 305 AHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMvsrDLQIQTL 384
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG---ILKDTEL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 385 QEEEVKLKAQVARSQQDIERykqQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQ 464
Cdd:pfam02463 635 TKLKESAKAKESGLRKGVSL---EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
490 500
....*....|....*....|....*...
gi 2030424379 465 ETEQALQEQEVVLKAVTLERDQAVQALR 492
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELK 739
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
15-258 |
2.70e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 15 LRKEEEWRALQAHRTQLqEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERydaafaqarewEEARRAEVSE 94
Cdd:TIGR02169 290 LRVKEKIGELEAEIASL-ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE-----------ERKRRDKLTE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 95 LKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNgEIDHHREQYENLKWTLERKLEELDGELALQRQEl 174
Cdd:TIGR02169 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAK- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 175 LLEFESKMrkrehefrlqadnmsntaLSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEA 254
Cdd:TIGR02169 436 INELEEEK------------------EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
....
gi 2030424379 255 MSRA 258
Cdd:TIGR02169 498 QARA 501
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
12-299 |
3.34e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 12 ELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAaFAQAREWEEARRAE 91
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK-EEKLKAQEEELRAL 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 92 VSELKIEAAKLRQalaREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR 171
Cdd:pfam02463 807 EEELKEEAELLEE---EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 172 QEL---LLEFESKMRKREHEFRLQADNM----SNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQS 244
Cdd:pfam02463 884 LKDeleSKEEKEKEEKKELEEESQKLNLleekENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNK 963
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2030424379 245 RagELQDLEAMSRARVKDLEDKlhsvqltrKKEEETFKRKHEELDRLAREKDAVL 299
Cdd:pfam02463 964 R--LLLAKEELGKVNLMAIEEF--------EEKEERYNKDELEKERLEEEKKKLI 1008
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
9-512 |
3.39e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 9 ALNELLLRKEEEWRALQAHRTQLQeAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEAR 88
Cdd:pfam01576 500 SLQEQLEEEEEAKRNVERQLSTLQ-AQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRL 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 89 RAEVSELKIEAAKLRQ---ALAREARKVEELQQQQQLAFQEHRLELERVHSDKngeidhhREQyENLKWTLERKLEELDG 165
Cdd:pfam01576 579 QQELDDLLVDLDHQRQlvsNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEA-------REK-ETRALSLARALEEALE 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 166 ---ELALQRQELLLEFESKMR------KREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQraeATNA 236
Cdd:pfam01576 651 akeELERTNKQLRAEMEDLVSskddvgKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQ---ALKA 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 237 ELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAhVEQLQELQTR 316
Cdd:pfam01576 728 QFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEA-VKQLKKLQAQ 806
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 317 VLELQAHCEtlEAQLRRAEWRQADTAKEK-----DAAIDQLREDASTVKSA---WDAQIAQLSKEMVSRDLQIQTLQEEE 388
Cdd:pfam01576 807 MKDLQRELE--EARASRDEILAQSKESEKklknlEAELLQLQEDLAASERArrqAQQERDELADEIASGASGKSALQDEK 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 389 VKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRrcddiERDQIQKSEALIQGLSMAKSQVAAKLQETEQ 468
Cdd:pfam01576 885 RRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAA-----ERSTSQKSESARQQLERQNKELKAKLQEMEG 959
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 2030424379 469 ALQ-EQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEI 512
Cdd:pfam01576 960 TVKsKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKL 1004
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
42-371 |
4.24e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 42 QLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQ 121
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 122 LAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEfesKMRKREHEFRLQADNMSNTAL 201
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL---ERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 202 SRELK-----VKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEdKLHSVQLTRKK 276
Cdd:pfam02463 327 EKELKkekeeIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE-EELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 277 EEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEaqLRRAEWRQADTAKEKDAAIDQLREDA 356
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE--LKLLKDELELKKSEDLLKETQLVKLQ 483
|
330
....*....|....*
gi 2030424379 357 STVKSAWDAQIAQLS 371
Cdd:pfam02463 484 EQLELLLSRQKLEER 498
|
|
| ASY3-like |
pfam20435 |
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific ... |
55-213 |
4.27e-03 |
|
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific proteins, such as AtASY3 from Arabidopsis and PAIR3 from rice. They are coiled-coil domain proteins required for normal meiosis. PAIR3 is an axial element and part of the synaptonemal complex (SC) that forms between homologous chromosomes during meiosis. Members of this family are homologs of SCYP2 from vertebrates and fungal Red1/Rec10.
Pssm-ID: 466584 [Multi-domain] Cd Length: 793 Bit Score: 41.02 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 55 EDFVYNLQVLEERDLELERYDAAFAQA--------REWEEARRAEV-----SELKIEAAKLRQALAREARKV----EELQ 117
Cdd:pfam20435 610 DSFQHCSEMDEDEDEGLGRAVALFAMAlqnferklKSAAEKKSSEIiasvsEEIHLELENIKSHIITEAGKTsnlaKTKR 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 118 QQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQR---QELLLEFESKMRKREHEFRLQAD 194
Cdd:pfam20435 690 KHAETRLQEQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIKKQRtshQKLIAHFEGGIETKLDDATKRID 769
|
170
....*....|....*....
gi 2030424379 195 NMSNTALSRELKVKLLHKE 213
Cdd:pfam20435 770 SVNKSARGKMLQLKMIVAE 788
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
15-270 |
4.37e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 15 LRKEEEWRALQAHRTQLQEAALQD--TRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEV 92
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 93 SELKIEAAKLRQALArEARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYEN-------LKWTLERKlEELDG 165
Cdd:TIGR02169 843 IDLKEQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRElerkieeLEAQIEKK-RKRLS 920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 166 ELALQRQELLLEFESKMRKREHEFRLQADNMSNTALsrELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSR 245
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV--QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL 998
|
250 260
....*....|....*....|....*
gi 2030424379 246 AGELQDLeamsRARVKDLEDKLHSV 270
Cdd:TIGR02169 999 EEERKAI----LERIEEYEKKKREV 1019
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
41-497 |
4.79e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 41 SQLEEAQGKLRCLQEDFVYNLQVLEERD------LELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVE 114
Cdd:PRK01156 322 NKYHAIIKKLSVLQKDYNDYIKKKSRYDdlnnqiLELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 115 ELQQQQQLAFQEHRLELERVHSDK---NGEIDHHREQYENLkwtlERKLEELDGELALQRQELLLEFESKMRKREHefrl 191
Cdd:PRK01156 402 IDPDAIKKELNEINVKLQDISSKVsslNQRIRALRENLDEL----SRNMEMLNGQSVCPVCGTTLGEEKSNHIINH---- 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 192 qadnMSNTALSRELKVKLLHKELEALKEagaKAAESLQRAEATNAELERKLQSRAGELQDLeamsRARVKDLEDKLhsvq 271
Cdd:PRK01156 474 ----YNEKKSRLEEKIREIEIEVKDIDE---KIVDLKKRKEYLESEEINKSINEYNKIESA----RADLEDIKIKI---- 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 272 lTRKKEEETfkrKHEELDRlarekdavlvAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAewRQADTAKEKDAAIDQ 351
Cdd:PRK01156 539 -NELKDKHD---KYEEIKN----------RYKSLKLEDLDSKRTSWLNALAVISLIDIETNRS--RSNEIKKQLNDLESR 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 352 LREDAST---VKSAWDAQIAQLSKEMVSRDLQIQTLQEeevkLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLG- 427
Cdd:PRK01156 603 LQEIEIGfpdDKSYIDKSIREIENEANNLNNKYNEIQE----NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINd 678
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2030424379 428 ----LDWQR-RCDDIERDQIQKsEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTlERDQAVQALRMHGLP 497
Cdd:PRK01156 679 iednLKKSRkALDDAKANRARL-ESTIEILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLREAFDKSGVP 751
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
384-546 |
5.73e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 384 LQEEEVKLKAQVARSQQDIERYKQ---------QLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSM 454
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQknglvdlseEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 455 AKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRmhglprpgAQM--LLRQHEEEISKDFPS--SEIQRLREQNTS 530
Cdd:COG3206 260 LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALR--------AQIaaLRAQLQQEAQRILASleAELEALQAREAS 331
|
170
....*....|....*.
gi 2030424379 531 LRNAIAQMRKEMEALS 546
Cdd:COG3206 332 LQAQLAQLEARLAELP 347
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
811-1019 |
5.92e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 811 RAELGRPERWLLHHALPPAPEARKPGEEPRRPLDRSPPLGQVQPhfTSQDAKSAEDEAPSR-HLGKHQPRSAQVGSRLDA 889
Cdd:PHA03247 2602 VDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT--VPPPERPRDDPAPGRvSRPRRARRLGRAAQASSP 2679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 890 LQGPKTQHSIHTVTCKSPRQKEDRSPKPPQAPQHPEEHGRqshssssfasgtlqdmwrlldlgSSPSGVTSQGDSTPELP 969
Cdd:PHA03247 2680 PQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT-----------------------PLPPGPAAARQASPALP 2736
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2030424379 970 APPAADRRPvkmqAGIATPGMKTAAQAKAKTTGASRSHPAKAKGCQRPPK 1019
Cdd:PHA03247 2737 AAPAPPAVP----AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
338-576 |
6.61e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 338 QADT-AKEKDAAIDQLREDASTVKS---AWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlav 413
Cdd:COG3883 13 FADPqIQAKQKELSELQAELEAAQAeldALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 414 ERERSLERDQVQLGL-----------DWQRRCDDIER------DQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVV 476
Cdd:COG3883 90 ERARALYRSGGSVSYldvllgsesfsDFLDRLSALSKiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 477 LKAVTLERDQAVQALrmhglprpgAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTA 556
Cdd:COG3883 170 KAELEAQQAEQEALL---------AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240
|
250 260
....*....|....*....|
gi 2030424379 557 AESTDANQPDPEAGGDAATP 576
Cdd:COG3883 241 AAAASAAGAGAAGAAGAAAG 260
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
308-488 |
6.91e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 308 EQLQELQTRVLELQAHCETLEAQ---LRRAEWRQADTAKEKDAAIDQLREDASTVKSAWD---AQIAQLSKEMVSRDLQI 381
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYnknIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEeltDELLNLVMDIEDPSAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 382 QTLQEEEVKLKAQVARSQQDIERY---------KQQLSLAVERERSLERDQVQLgldwQRRCDDIE--RDQIQKSEALIQ 450
Cdd:PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYekggvcptcTQQISEGPDRITKIKDKLKEL----QHSLEKLDtaIDELEEIMDEFN 333
|
170 180 190
....*....|....*....|....*....|....*...
gi 2030424379 451 GLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAV 488
Cdd:PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
344-492 |
7.07e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2030424379 344 EKDAAIDQLREDASTVK---SAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSlAVERERSLE 420
Cdd:COG1579 14 ELDSELDRLEHRLKELPaelAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG-NVRNNKEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2030424379 421 RDQVQLgldwqrrcdDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALR 492
Cdd:COG1579 93 ALQKEI---------ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
|
| |
